Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0175740 | sp|Q5RA17|RRP7A_PONAB | 31.788 | 151 | 87 | 4 | 46 | 190 | 140 | 280 | 2.24e-12 | 67.0 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0175740 | G7I416 | 78.947 | 190 | 22 | 1 | 1 | 190 | 17 | 188 | 1.24e-101 | 300 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003890 | Msa0175740 | 0.821320 | 4.298351e-53 | -8.615850e-47 |
| Msa0014710 | Msa0175740 | 0.806152 | 9.449364e-50 | -8.615850e-47 |
| Msa0017510 | Msa0175740 | 0.835730 | 1.415751e-56 | -8.615850e-47 |
| Msa0021510 | Msa0175740 | 0.815883 | 7.357013e-52 | -8.615850e-47 |
| Msa0044260 | Msa0175740 | 0.803045 | 4.204557e-49 | -8.615850e-47 |
| Msa0044330 | Msa0175740 | 0.800856 | 1.184072e-48 | -8.615850e-47 |
| Msa0050390 | Msa0175740 | 0.807529 | 4.835870e-50 | -8.615850e-47 |
| Msa0084380 | Msa0175740 | 0.816872 | 4.419982e-52 | -8.615850e-47 |
| Msa0112810 | Msa0175740 | 0.802534 | 5.358972e-49 | -8.615850e-47 |
| Msa0114060 | Msa0175740 | 0.817590 | 3.047350e-52 | -8.615850e-47 |
| Msa0116770 | Msa0175740 | 0.804961 | 1.680037e-49 | -8.615850e-47 |
| Msa0131770 | Msa0175740 | 0.807082 | 6.012106e-50 | -8.615850e-47 |
| Msa0136070 | Msa0175740 | 0.801816 | 7.532979e-49 | -8.615850e-47 |
| Msa0136100 | Msa0175740 | 0.802429 | 5.632832e-49 | -8.615850e-47 |
| Msa0157290 | Msa0175740 | 0.835465 | 1.651490e-56 | -8.615850e-47 |
| Msa0165210 | Msa0175740 | 0.813829 | 2.099974e-51 | -8.615850e-47 |
| Msa0165220 | Msa0175740 | 0.801406 | 9.139723e-49 | -8.615850e-47 |
| Msa0166560 | Msa0175740 | 0.807624 | 4.616043e-50 | -8.615850e-47 |
| Msa0171540 | Msa0175740 | 0.808510 | 2.989394e-50 | -8.615850e-47 |
| Msa0175740 | Msa0175780 | 0.800317 | 1.525020e-48 | -8.615850e-47 |
| Msa0175740 | Msa0180500 | 0.807226 | 5.606556e-50 | -8.615850e-47 |
| Msa0175740 | Msa0197660 | 0.811227 | 7.780413e-51 | -8.615850e-47 |
| Msa0175740 | Msa0208090 | 0.821580 | 3.744344e-53 | -8.615850e-47 |
| Msa0175740 | Msa0212990 | 0.812725 | 3.669267e-51 | -8.615850e-47 |
| Msa0175740 | Msa0215320 | -0.804391 | 2.209726e-49 | -8.615850e-47 |
| Msa0175740 | Msa0218810 | 0.809999 | 1.433345e-50 | -8.615850e-47 |
| Msa0175740 | Msa0220580 | 0.808708 | 2.712708e-50 | -8.615850e-47 |
| Msa0175740 | Msa0220740 | 0.816068 | 6.691629e-52 | -8.615850e-47 |
| Msa0175740 | Msa0222890 | 0.814936 | 1.195357e-51 | -8.615850e-47 |
| Msa0175740 | Msa0239800 | 0.817819 | 2.706437e-52 | -8.615850e-47 |
| Msa0175740 | Msa0249560 | 0.807167 | 5.770629e-50 | -8.615850e-47 |
| Msa0175740 | Msa0251640 | 0.802345 | 5.862779e-49 | -8.615850e-47 |
| Msa0175740 | Msa0258760 | 0.800198 | 1.612680e-48 | -8.615850e-47 |
| Msa0175740 | Msa0273100 | 0.812468 | 4.175172e-51 | -8.615850e-47 |
| Msa0175740 | Msa0278110 | 0.812441 | 4.233858e-51 | -8.615850e-47 |
| Msa0175740 | Msa0280090 | 0.801680 | 8.030704e-49 | -8.615850e-47 |
| Msa0175740 | Msa0288100 | 0.827343 | 1.648719e-54 | -8.615850e-47 |
| Msa0175740 | Msa0305190 | 0.809591 | 1.754148e-50 | -8.615850e-47 |
| Msa0175740 | Msa0306210 | -0.804440 | 2.158380e-49 | -8.615850e-47 |
| Msa0175740 | Msa0317510 | 0.809613 | 1.735740e-50 | -8.615850e-47 |
| Msa0175740 | Msa0325830 | 0.804999 | 1.649880e-49 | -8.615850e-47 |
| Msa0175740 | Msa0326520 | 0.822467 | 2.331844e-53 | -8.615850e-47 |
| Msa0175740 | Msa0330340 | 0.807219 | 5.625711e-50 | -8.615850e-47 |
| Msa0175740 | Msa0339250 | 0.814268 | 1.679718e-51 | -8.615850e-47 |
| Msa0175740 | Msa0340450 | 0.808514 | 2.984065e-50 | -8.615850e-47 |
| Msa0175740 | Msa0342750 | 0.805236 | 1.471618e-49 | -8.615850e-47 |
| Msa0175740 | Msa0350990 | 0.811794 | 5.856601e-51 | -8.615850e-47 |
| Msa0175740 | Msa0351030 | 0.818257 | 2.154021e-52 | -8.615850e-47 |
| Msa0175740 | Msa0351100 | 0.811663 | 6.255155e-51 | -8.615850e-47 |
| Msa0175740 | Msa0355220 | 0.827210 | 1.773826e-54 | -8.615850e-47 |
| Msa0175740 | Msa0367870 | 0.801403 | 9.155211e-49 | -8.615850e-47 |
| Msa0175740 | Msa0381610 | -0.808838 | 2.543741e-50 | -8.615850e-47 |
| Msa0175740 | Msa0388950 | 0.805227 | 1.477728e-49 | -8.615850e-47 |
| Msa0175740 | Msa0390070 | 0.807972 | 3.893406e-50 | -8.615850e-47 |
| Msa0175740 | Msa0390400 | -0.806760 | 7.033994e-50 | -8.615850e-47 |
| Msa0175740 | Msa0395790 | 0.833167 | 6.230601e-56 | -8.615850e-47 |
| Msa0175740 | Msa0402290 | 0.828927 | 6.847277e-55 | -8.615850e-47 |
| Msa0175740 | Msa0408110 | 0.809637 | 1.714741e-50 | -8.615850e-47 |
| Msa0175740 | Msa0416650 | 0.810046 | 1.400528e-50 | -8.615850e-47 |
| Msa0175740 | Msa0417100 | 0.820769 | 5.758373e-53 | -8.615850e-47 |
| Msa0175740 | Msa0443260 | 0.823714 | 1.194016e-53 | -8.615850e-47 |
| Msa0175740 | Msa0453640 | 0.801452 | 8.944711e-49 | -8.615850e-47 |
| Msa0175740 | Msa0464680 | 0.808045 | 3.756289e-50 | -8.615850e-47 |
| Msa0175740 | Msa0483150 | 0.801340 | 9.428940e-49 | -8.615850e-47 |
| Msa0175740 | Msa0484780 | 0.813770 | 2.163157e-51 | -8.615850e-47 |
| Msa0175740 | Msa0502340 | 0.811233 | 7.755540e-51 | -8.615850e-47 |
| Msa0175740 | Msa0502890 | 0.810174 | 1.314399e-50 | -8.615850e-47 |
| Msa0175740 | Msa0523940 | 0.808538 | 2.948295e-50 | -8.615850e-47 |
| Msa0175740 | Msa0529890 | 0.801186 | 1.014062e-48 | -8.615850e-47 |
| Msa0175740 | Msa0545700 | 0.810724 | 9.997733e-51 | -8.615850e-47 |
| Msa0175740 | Msa0562440 | 0.802405 | 5.699587e-49 | -8.615850e-47 |
| Msa0175740 | Msa0585230 | 0.815241 | 1.022458e-51 | -8.615850e-47 |
| Msa0175740 | Msa0593650 | 0.810919 | 9.071639e-51 | -8.615850e-47 |
| Msa0175740 | Msa0598780 | 0.808268 | 3.366298e-50 | -8.615850e-47 |
| Msa0175740 | Msa0601750 | 0.824704 | 6.989099e-54 | -8.615850e-47 |
| Msa0175740 | Msa0625720 | 0.801638 | 8.194294e-49 | -8.615850e-47 |
| Msa0175740 | Msa0626090 | 0.811029 | 8.586826e-51 | -8.615850e-47 |
| Msa0175740 | Msa0650630 | 0.811071 | 8.411255e-51 | -8.615850e-47 |
| Msa0175740 | Msa0652940 | 0.808508 | 2.991628e-50 | -8.615850e-47 |
| Msa0175740 | Msa0657970 | 0.826683 | 2.371530e-54 | -8.615850e-47 |
| Msa0175740 | Msa0661650 | 0.817216 | 3.699279e-52 | -8.615850e-47 |
| Msa0175740 | Msa0663240 | 0.813692 | 2.250017e-51 | -8.615850e-47 |
| Msa0175740 | Msa0663380 | 0.801232 | 9.920140e-49 | -8.615850e-47 |
| Msa0175740 | Msa0672690 | 0.808445 | 3.086661e-50 | -8.615850e-47 |
| Msa0175740 | Msa0688480 | 0.818556 | 1.842714e-52 | -8.615850e-47 |
| Msa0175740 | Msa0694370 | 0.803568 | 3.275489e-49 | -8.615850e-47 |
| Msa0175740 | Msa0697030 | 0.802624 | 5.136499e-49 | -8.615850e-47 |
| Msa0175740 | Msa0701010 | 0.820936 | 5.268977e-53 | -8.615850e-47 |
| Msa0175740 | Msa0724210 | 0.802577 | 5.251774e-49 | -8.615850e-47 |
| Msa0175740 | Msa0731940 | 0.856369 | 3.371369e-62 | -8.615850e-47 |
| Msa0175740 | Msa0735170 | 0.817727 | 2.838885e-52 | -8.615850e-47 |
| Msa0175740 | Msa0743950 | 0.818724 | 1.688207e-52 | -8.615850e-47 |
| Msa0175740 | Msa0745790 | 0.811277 | 7.588205e-51 | -8.615850e-47 |
| Msa0175740 | Msa0756460 | 0.806780 | 6.965407e-50 | -8.615850e-47 |
| Msa0175740 | Msa0760130 | 0.809575 | 1.768586e-50 | -8.615850e-47 |
| Msa0175740 | Msa0766630 | 0.829472 | 5.051965e-55 | -8.615850e-47 |
| Msa0175740 | Msa0767760 | 0.811536 | 6.666856e-51 | -8.615850e-47 |
| Msa0175740 | Msa0768290 | 0.807535 | 4.820313e-50 | -8.615850e-47 |
| Msa0175740 | Msa0797170 | 0.804504 | 2.092985e-49 | -8.615850e-47 |
| Msa0175740 | Msa0810220 | 0.817218 | 3.696660e-52 | -8.615850e-47 |
| Msa0175740 | Msa0817460 | 0.803903 | 2.791220e-49 | -8.615850e-47 |
| Msa0175740 | Msa0820850 | 0.810295 | 1.237485e-50 | -8.615850e-47 |
| Msa0175740 | Msa0822870 | 0.805629 | 1.217241e-49 | -8.615850e-47 |
| Msa0175740 | Msa0824660 | 0.807823 | 4.186738e-50 | -8.615850e-47 |
| Msa0175740 | Msa0832340 | 0.806398 | 8.388722e-50 | -8.615850e-47 |
| Msa0175740 | Msa0844490 | 0.822861 | 1.888476e-53 | -8.615850e-47 |
| Msa0175740 | Msa0857640 | 0.814704 | 1.345495e-51 | -8.615850e-47 |
| Msa0175740 | Msa0857680 | 0.809234 | 2.093031e-50 | -8.615850e-47 |
| Msa0175740 | Msa0861130 | 0.809230 | 2.097229e-50 | -8.615850e-47 |
| Msa0175740 | Msa0864250 | 0.821614 | 3.676415e-53 | -8.615850e-47 |
| Msa0175740 | Msa0875290 | 0.804803 | 1.813125e-49 | -8.615850e-47 |
| Msa0175740 | Msa0877250 | 0.804581 | 2.016462e-49 | -8.615850e-47 |
| Msa0175740 | Msa0880140 | 0.833257 | 5.915462e-56 | -8.615850e-47 |
| Msa0175740 | Msa0897330 | 0.814572 | 1.438762e-51 | -8.615850e-47 |
| Msa0175740 | Msa0899430 | 0.805442 | 1.332019e-49 | -8.615850e-47 |
| Msa0175740 | Msa0907070 | 0.816547 | 5.228360e-52 | -8.615850e-47 |
| Msa0175740 | Msa0907260 | 0.807328 | 5.332421e-50 | -8.615850e-47 |
| Msa0175740 | Msa0918700 | 0.811801 | 5.838730e-51 | -8.615850e-47 |
| Msa0175740 | Msa0922410 | 0.804495 | 2.101358e-49 | -8.615850e-47 |
| Msa0175740 | Msa0927380 | 0.832279 | 1.035216e-55 | -8.615850e-47 |
| Msa0175740 | Msa0935910 | 0.803953 | 2.726019e-49 | -8.615850e-47 |
| Msa0175740 | Msa0936300 | 0.823233 | 1.546789e-53 | -8.615850e-47 |
| Msa0175740 | Msa0938220 | 0.814405 | 1.566682e-51 | -8.615850e-47 |
| Msa0175740 | Msa0947660 | 0.810669 | 1.027503e-50 | -8.615850e-47 |
| Msa0175740 | Msa0956270 | 0.804368 | 2.234290e-49 | -8.615850e-47 |
| Msa0175740 | Msa0964900 | 0.807949 | 3.936710e-50 | -8.615850e-47 |
| Msa0175740 | Msa0969450 | 0.802409 | 5.687431e-49 | -8.615850e-47 |
| Msa0175740 | Msa0969520 | 0.843239 | 1.583477e-58 | -8.615850e-47 |
| Msa0175740 | Msa0973100 | 0.824144 | 9.462452e-54 | -8.615850e-47 |
| Msa0175740 | Msa0974070 | 0.802019 | 6.841109e-49 | -8.615850e-47 |
| Msa0175740 | Msa0974080 | 0.817925 | 2.560742e-52 | -8.615850e-47 |
| Msa0175740 | Msa0976670 | 0.815646 | 8.308259e-52 | -8.615850e-47 |
| Msa0175740 | Msa0983090 | 0.826714 | 2.330862e-54 | -8.615850e-47 |
| Msa0175740 | Msa0991080 | 0.822642 | 2.124043e-53 | -8.615850e-47 |
| Msa0175740 | Msa0998690 | 0.820118 | 8.122865e-53 | -8.615850e-47 |
| Msa0175740 | Msa1000250 | 0.812318 | 4.504134e-51 | -8.615850e-47 |
| Msa0175740 | Msa1002000 | 0.800879 | 1.171642e-48 | -8.615850e-47 |
| Msa0175740 | Msa1002850 | 0.817559 | 3.097040e-52 | -8.615850e-47 |
| Msa0175740 | Msa1014540 | 0.830391 | 3.014974e-55 | -8.615850e-47 |
| Msa0175740 | Msa1030970 | 0.806043 | 9.963236e-50 | -8.615850e-47 |
| Msa0175740 | Msa1036610 | 0.804232 | 2.384283e-49 | -8.615850e-47 |
| Msa0175740 | Msa1075220 | -0.804704 | 1.901315e-49 | -8.615850e-47 |
| Msa0175740 | Msa1075540 | 0.833092 | 6.503592e-56 | -8.615850e-47 |
| Msa0175740 | Msa1075650 | 0.813216 | 2.863479e-51 | -8.615850e-47 |
| Msa0175740 | Msa1082500 | 0.813998 | 1.926738e-51 | -8.615850e-47 |
| Msa0175740 | Msa1104370 | 0.802053 | 6.733496e-49 | -8.615850e-47 |
| Msa0175740 | Msa1113170 | 0.821363 | 4.201398e-53 | -8.615850e-47 |
| Msa0175740 | Msa1119480 | 0.819488 | 1.131333e-52 | -8.615850e-47 |
| Msa0175740 | Msa1121450 | -0.804919 | 1.714502e-49 | -8.615850e-47 |
| Msa0175740 | Msa1121480 | 0.816570 | 5.165008e-52 | -8.615850e-47 |
| Msa0175740 | Msa1121490 | 0.844852 | 5.849768e-59 | -8.615850e-47 |
| Msa0175740 | Msa1137570 | 0.831505 | 1.606827e-55 | -8.615850e-47 |
| Msa0175740 | Msa1154280 | 0.805904 | 1.065613e-49 | -8.615850e-47 |
| Msa0175740 | Msa1156020 | 0.804129 | 2.504800e-49 | -8.615850e-47 |
| Msa0175740 | Msa1162550 | -0.807069 | 6.051678e-50 | -8.615850e-47 |
| Msa0175740 | Msa1162780 | 0.810757 | 9.834574e-51 | -8.615850e-47 |
| Msa0175740 | Msa1186950 | -0.811628 | 6.365981e-51 | -8.615850e-47 |
| Msa0175740 | Msa1188990 | 0.803596 | 3.233355e-49 | -8.615850e-47 |
| Msa0175740 | Msa1193290 | 0.822035 | 2.938160e-53 | -8.615850e-47 |
| Msa0175740 | Msa1228590 | 0.824523 | 7.710288e-54 | -8.615850e-47 |
| Msa0175740 | Msa1238930 | 0.817162 | 3.803592e-52 | -8.615850e-47 |
| Msa0175740 | Msa1244250 | 0.801605 | 8.320237e-49 | -8.615850e-47 |
| Msa0175740 | Msa1246510 | 0.822621 | 2.147419e-53 | -8.615850e-47 |
| Msa0175740 | Msa1249490 | 0.808517 | 2.978892e-50 | -8.615850e-47 |
| Msa0175740 | Msa1252140 | 0.819995 | 8.664243e-53 | -8.615850e-47 |
| Msa0175740 | Msa1257130 | 0.813068 | 3.086327e-51 | -8.615850e-47 |
| Msa0175740 | Msa1273920 | 0.827076 | 1.909757e-54 | -8.615850e-47 |
| Msa0175740 | Msa1277660 | 0.822187 | 2.708606e-53 | -8.615850e-47 |
| Msa0175740 | Msa1282580 | -0.823050 | 1.706344e-53 | -8.615850e-47 |
| Msa0175740 | Msa1283860 | 0.809915 | 1.494659e-50 | -8.615850e-47 |
| Msa0175740 | Msa1284680 | 0.842013 | 3.351422e-58 | -8.615850e-47 |
| Msa0175740 | Msa1286800 | 0.819512 | 1.116873e-52 | -8.615850e-47 |
| Msa0175740 | Msa1313140 | 0.807565 | 4.749979e-50 | -8.615850e-47 |
| Msa0175740 | Msa1320410 | 0.812742 | 3.638371e-51 | -8.615850e-47 |
| Msa0175740 | Msa1322890 | 0.800046 | 1.731902e-48 | -8.615850e-47 |
| Msa0175740 | Msa1327050 | 0.809029 | 2.315152e-50 | -8.615850e-47 |
| Msa0175740 | Msa1348890 | 0.809158 | 2.172961e-50 | -8.615850e-47 |
| Msa0175740 | Msa1353470 | 0.831262 | 1.844169e-55 | -8.615850e-47 |
| Msa0175740 | Msa1353980 | 0.800493 | 1.404426e-48 | -8.615850e-47 |
| Msa0175740 | Msa1366810 | 0.839620 | 1.420720e-57 | -8.615850e-47 |
| Msa0175740 | Msa1397860 | 0.820374 | 7.095551e-53 | -8.615850e-47 |
| Msa0175740 | Msa1402730 | 0.807002 | 6.251540e-50 | -8.615850e-47 |
| Msa0175740 | Msa1403480 | 0.803925 | 2.761819e-49 | -8.615850e-47 |
| Msa0175740 | Msa1411020 | 0.814030 | 1.895877e-51 | -8.615850e-47 |
| Msa0175740 | Msa1412640 | 0.822636 | 2.130196e-53 | -8.615850e-47 |
| Msa0175740 | Msa1420490 | 0.815862 | 7.438466e-52 | -8.615850e-47 |
| Msa0175740 | Msa1423390 | 0.814864 | 1.239707e-51 | -8.615850e-47 |
| Msa0175740 | Msa1423870 | 0.801934 | 7.122516e-49 | -8.615850e-47 |
| Msa0175740 | Msa1424290 | 0.810259 | 1.259905e-50 | -8.615850e-47 |
| Msa0175740 | Msa1434350 | 0.812450 | 4.214024e-51 | -8.615850e-47 |
| Msa0175740 | Msa1439320 | 0.810511 | 1.111728e-50 | -8.615850e-47 |
| Msa0175740 | Msa1440370 | 0.818194 | 2.225652e-52 | -8.615850e-47 |
| Msa0175740 | Msa1440810 | 0.818435 | 1.962972e-52 | -8.615850e-47 |
| Msa0175740 | Msa1460050 | 0.800088 | 1.698418e-48 | -8.615850e-47 |
| Msa0175740 | Msa1466540 | 0.841206 | 5.470060e-58 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0175740 | MtrunA17_Chr4g0025631 | 80.460 | 174 | 34 | 0 | 17 | 190 | 204 | 377 | 1.96e-95 | 282 |
| Msa0175740 | MtrunA17_Chr8g0378681 | 79.191 | 173 | 36 | 0 | 18 | 190 | 162 | 334 | 1.03e-93 | 276 |
| Msa0175740 | MtrunA17_Chr1g0197131 | 90.226 | 133 | 13 | 0 | 58 | 190 | 1 | 133 | 1.29e-84 | 246 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0175740 | AT5G38720.1 | 61.745 | 149 | 56 | 1 | 43 | 190 | 158 | 306 | 2.84e-62 | 195 |
| Msa0175740 | AT5G38720.3 | 61.745 | 149 | 56 | 1 | 43 | 190 | 165 | 313 | 3.78e-62 | 195 |
| Msa0175740 | AT5G38720.2 | 63.448 | 145 | 52 | 1 | 47 | 190 | 181 | 325 | 1.86e-61 | 194 |
Find 40 sgRNAs with CRISPR-Local
Find 274 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAAACTACAGAATGGATTA+TGG | 0.261065 | 1_4:+61854057 | Msa0175740:intron |
| TGCTTTGCTTGCAGAAATAA+TGG | 0.261678 | 1_4:+61857448 | Msa0175740:intron |
| GGAGACGATGACTGCTTAAT+TGG | 0.267135 | 1_4:+61853704 | Msa0175740:CDS |
| GTTGATTTACAGCACCAAAT+TGG | 0.304593 | 1_4:+61853263 | Msa0175740:CDS |
| GCTATCAACATCATTTAATA+AGG | 0.328209 | 1_4:-61857539 | None:intergenic |
| TGCAGAAATAATGGAATTGC+AGG | 0.332786 | 1_4:+61857457 | Msa0175740:intron |
| TATCCATGAACTCACCAATT+TGG | 0.333336 | 1_4:-61853277 | None:intergenic |
| CCAACCTCAGTCTACTTTGA+TGG | 0.365142 | 1_4:-61854084 | None:intergenic |
| AGCCGCTGCGGAGAATAAAT+TGG | 0.366514 | 1_4:+61856338 | Msa0175740:CDS |
| CAAACTACAGAATGGATTAT+GGG | 0.411048 | 1_4:+61854058 | Msa0175740:intron |
| GAATTTCACATCATTTCCTC+TGG | 0.416937 | 1_4:+61853683 | Msa0175740:CDS |
| TCCATCCACCTTCTGTGGCA+AGG | 0.448107 | 1_4:-61856239 | None:intergenic |
| TCTGAAAGTGGTATTGTTGT+GGG | 0.455255 | 1_4:+61856303 | Msa0175740:CDS |
| CTCTGAAAGTGGTATTGTTG+TGG | 0.473722 | 1_4:+61856302 | Msa0175740:CDS |
| GGAATTGCAGGGAAAATTTG+AGG | 0.483609 | 1_4:+61857469 | Msa0175740:CDS |
| CCATCCACCTTCTGTGGCAA+GGG | 0.488450 | 1_4:-61856238 | None:intergenic |
| TTGATAGCAGCCAAGGTTGA+CGG | 0.495997 | 1_4:+61857554 | Msa0175740:three_prime_UTR |
| CCATCAAAGTAGACTGAGGT+TGG | 0.508105 | 1_4:+61854084 | Msa0175740:CDS |
| GAAGCCCTTGCCACAGAAGG+TGG | 0.529013 | 1_4:+61856234 | Msa0175740:CDS |
| AAAAGAGAAGCTCAGAGAAA+CGG | 0.534751 | 1_4:+61856408 | Msa0175740:CDS |
| ATATAAGAAGAAAACAAGAA+AGG | 0.536232 | 1_4:+61853616 | Msa0175740:CDS |
| CTCAGTTGCTCAAGCCGCTG+CGG | 0.537973 | 1_4:+61856326 | Msa0175740:CDS |
| AAAACAACTGACTCTGAAAG+TGG | 0.539464 | 1_4:+61856291 | Msa0175740:CDS |
| AAGAAAAGAACCGTCAACCT+TGG | 0.559066 | 1_4:-61857564 | None:intergenic |
| CCCTTGCCACAGAAGGTGGA+TGG | 0.565775 | 1_4:+61856238 | Msa0175740:CDS |
| AATGATGTTGATAGCAGCCA+AGG | 0.565949 | 1_4:+61857547 | Msa0175740:exon |
| TCAAAGTAGACTGAGGTTGG+AGG | 0.578314 | 1_4:+61854087 | Msa0175740:CDS |
| AAAGAAGCCCTTGCCACAGA+AGG | 0.581783 | 1_4:+61856231 | Msa0175740:CDS |
| GACGGTAGTTGCACACCACA+AGG | 0.582197 | 1_4:+61856260 | Msa0175740:CDS |
| TACCGTCCATCCACCTTCTG+TGG | 0.583619 | 1_4:-61856244 | None:intergenic |
| CGACTATGTAACTGCTTACG+AGG | 0.591755 | 1_4:+61854129 | Msa0175740:CDS |
| TGCCACAGAAGGTGGATGGA+CGG | 0.606359 | 1_4:+61856242 | Msa0175740:CDS |
| GGCCAATTTATTCTCCGCAG+CGG | 0.614569 | 1_4:-61856340 | None:intergenic |
| TAGTTGCACACCACAAGGGT+AGG | 0.618932 | 1_4:+61856265 | Msa0175740:CDS |
| TAAGAAGAAAACAAGAAAGG+AGG | 0.631645 | 1_4:+61853619 | Msa0175740:CDS |
| ATTGCAGGGAAAATTTGAGG+AGG | 0.657835 | 1_4:+61857472 | Msa0175740:CDS |
| TAAGCAGTCATCGTCTCCAG+AGG | 0.666489 | 1_4:-61853699 | None:intergenic |
| GCAGAAATAATGGAATTGCA+GGG | 0.670645 | 1_4:+61857458 | Msa0175740:intron |
| ACGGTAGTTGCACACCACAA+GGG | 0.714687 | 1_4:+61856261 | Msa0175740:CDS |
| GATGCCATCAAAGTAGACTG+AGG | 0.743254 | 1_4:+61854080 | Msa0175740:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTAAATTCATATAATTTTAA+CGG | - | chr1_4:61857311-61857330 | None:intergenic | 10.0% |
| !!! | ACAACTTTTATGATAAAAAA+TGG | - | chr1_4:61856490-61856509 | None:intergenic | 15.0% |
| !!! | TTATTTTAAACAAACATCAT+TGG | - | chr1_4:61856547-61856566 | None:intergenic | 15.0% |
| !! | ACTTTGTATAAGTATAAAAC+TGG | + | chr1_4:61853304-61853323 | Msa0175740:intron | 20.0% |
| !! | TTCTGCTTATTTATTGAATA+TGG | + | chr1_4:61853336-61853355 | Msa0175740:intron | 20.0% |
| !! | ATTTCACAATAATACAACAA+TGG | - | chr1_4:61853528-61853547 | None:intergenic | 20.0% |
| !!! | TGAAGTTATCTTTGTTTTTT+AGG | + | chr1_4:61853581-61853600 | Msa0175740:intron | 20.0% |
| !! | ATATAAGAAGAAAACAAGAA+AGG | + | chr1_4:61853616-61853635 | Msa0175740:CDS | 20.0% |
| !! | TTAACATAGAAAATGTTGTA+AGG | - | chr1_4:61853840-61853859 | None:intergenic | 20.0% |
| !!! | TAATTTTCATTCATAAGAGA+GGG | + | chr1_4:61854426-61854445 | Msa0175740:intron | 20.0% |
| !!! | AATATTAGATAGAAGTTTTG+CGG | - | chr1_4:61855130-61855149 | None:intergenic | 20.0% |
| !! | AACTTCTATCTAATATTTGT+CGG | + | chr1_4:61855133-61855152 | Msa0175740:intron | 20.0% |
| !! | TTAATCATGTATCAAAGATT+GGG | - | chr1_4:61855310-61855329 | None:intergenic | 20.0% |
| !! | AGACAATTTATAGATTTCTT+TGG | - | chr1_4:61855444-61855463 | None:intergenic | 20.0% |
| !! | TGGATCAAATTATAGAAAAA+TGG | + | chr1_4:61855973-61855992 | Msa0175740:intron | 20.0% |
| !!! | AGGATATTAAGTTTTGTAAA+GGG | - | chr1_4:61856065-61856084 | None:intergenic | 20.0% |
| !!! | ACTATATAGAAATAATGGAA+AGG | - | chr1_4:61856101-61856120 | None:intergenic | 20.0% |
| !!! | AACTTCTTTAAGTTTCTTTT+TGG | - | chr1_4:61856364-61856383 | None:intergenic | 20.0% |
| !! | AAAAAGAAACTTAAAGAAGT+TGG | + | chr1_4:61856363-61856382 | Msa0175740:CDS | 20.0% |
| !! | TTACCTAGGATATAAAAATA+TGG | - | chr1_4:61856460-61856479 | None:intergenic | 20.0% |
| !!! | CGTTTCTTTTAGAAATATTA+GGG | + | chr1_4:61856658-61856677 | Msa0175740:intron | 20.0% |
| !! | ATCTATCTATACCTTTAATT+AGG | - | chr1_4:61856727-61856746 | None:intergenic | 20.0% |
| !! | TGTTTGATGAAGAAAAAAAA+GGG | - | chr1_4:61857349-61857368 | None:intergenic | 20.0% |
| !!! | TTAATAAGGTCTAAATTTTC+TGG | - | chr1_4:61857528-61857547 | None:intergenic | 20.0% |
| ! | AAAACAAAGATAACTTCATG+AGG | - | chr1_4:61853579-61853598 | None:intergenic | 25.0% |
| !!! | GTTATCTTTGTTTTTTAGGT+AGG | + | chr1_4:61853585-61853604 | Msa0175740:intron | 25.0% |
| !! | CAGCATTAATACAAATTTTG+AGG | + | chr1_4:61853765-61853784 | Msa0175740:intron | 25.0% |
| ! | GTTTATCAAATGGATATGTA+TGG | - | chr1_4:61853813-61853832 | None:intergenic | 25.0% |
| ! | ATAGAAAATGTTGTAAGGTA+AGG | - | chr1_4:61853835-61853854 | None:intergenic | 25.0% |
| ! | ATAAATCTGTACAAAGTACA+CGG | - | chr1_4:61853982-61854001 | None:intergenic | 25.0% |
| ! | TCTATATTTATCGTCATACA+TGG | + | chr1_4:61854011-61854030 | Msa0175740:intron | 25.0% |
| !!! | CAAAATTTTGAAACAATGTC+TGG | - | chr1_4:61854222-61854241 | None:intergenic | 25.0% |
| ! | TATTATCCCCACTAAAATAA+GGG | - | chr1_4:61854284-61854303 | None:intergenic | 25.0% |
| ! | TTATTATCCCCACTAAAATA+AGG | - | chr1_4:61854285-61854304 | None:intergenic | 25.0% |
| !! | GTAATTTTCATTCATAAGAG+AGG | + | chr1_4:61854425-61854444 | Msa0175740:intron | 25.0% |
| ! | ATCAAAGTTATAGTTGCATA+AGG | + | chr1_4:61854462-61854481 | Msa0175740:intron | 25.0% |
| ! | AACTTATAATTCTGTGTCTA+TGG | - | chr1_4:61854680-61854699 | None:intergenic | 25.0% |
| ! | CTCATTTATGATAAAGAACA+TGG | + | chr1_4:61854885-61854904 | Msa0175740:intron | 25.0% |
| ! | ATTTATGATAAAGAACATGG+AGG | + | chr1_4:61854888-61854907 | Msa0175740:intron | 25.0% |
| ! | TTTATGATAAAGAACATGGA+GGG | + | chr1_4:61854889-61854908 | Msa0175740:intron | 25.0% |
| !!! | TCAACTGTCCTTTTATTTTT+AGG | + | chr1_4:61855006-61855025 | Msa0175740:intron | 25.0% |
| ! | GAGTTTCTTAGTAAGTTATA+GGG | - | chr1_4:61855070-61855089 | None:intergenic | 25.0% |
| ! | AGAGTTTCTTAGTAAGTTAT+AGG | - | chr1_4:61855071-61855090 | None:intergenic | 25.0% |
| !! | ATATTAGATAGAAGTTTTGC+GGG | - | chr1_4:61855129-61855148 | None:intergenic | 25.0% |
| ! | TAATCATGTATCAAAGATTG+GGG | - | chr1_4:61855309-61855328 | None:intergenic | 25.0% |
| ! | GTTAATCATGTATCAAAGAT+TGG | - | chr1_4:61855311-61855330 | None:intergenic | 25.0% |
| ! | TGATTGAGAAGAATTAAGAT+TGG | - | chr1_4:61855756-61855775 | None:intergenic | 25.0% |
| ! | TAGTATACTATGTATTTGAG+AGG | + | chr1_4:61856016-61856035 | Msa0175740:intron | 25.0% |
| !!! | ATATTAAGTTTTGTAAAGGG+CGG | - | chr1_4:61856062-61856081 | None:intergenic | 25.0% |
| !!! | GAGGATATTAAGTTTTGTAA+AGG | - | chr1_4:61856066-61856085 | None:intergenic | 25.0% |
| ! | GAGAGACTATATAGAAATAA+TGG | - | chr1_4:61856106-61856125 | None:intergenic | 25.0% |
| ! | CCAAAATAAGTAACAAATGA+GGG | - | chr1_4:61856168-61856187 | None:intergenic | 25.0% |
| ! | ACCAAAATAAGTAACAAATG+AGG | - | chr1_4:61856169-61856188 | None:intergenic | 25.0% |
| !!! | TTGCCATATTTTTATATCCT+AGG | + | chr1_4:61856454-61856473 | Msa0175740:intron | 25.0% |
| !!! | AACATCATTGGTTTAAATTC+AGG | - | chr1_4:61856535-61856554 | None:intergenic | 25.0% |
| !! | AGAAAATCATAATGTTGCTT+AGG | + | chr1_4:61856569-61856588 | Msa0175740:intron | 25.0% |
| !! | GAAAATCATAATGTTGCTTA+GGG | + | chr1_4:61856570-61856589 | Msa0175740:intron | 25.0% |
| !! | AAAATCATAATGTTGCTTAG+GGG | + | chr1_4:61856571-61856590 | Msa0175740:intron | 25.0% |
| !!! | GCGTTTCTTTTAGAAATATT+AGG | + | chr1_4:61856657-61856676 | Msa0175740:intron | 25.0% |
| ! | CAAGTGATAAACCTAATTAA+AGG | + | chr1_4:61856713-61856732 | Msa0175740:intron | 25.0% |
| ! | ATGATTGTAATCTATCTAGA+TGG | + | chr1_4:61856923-61856942 | Msa0175740:intron | 25.0% |
| ! | TCTATTCTTAGTTTCTTCAT+AGG | + | chr1_4:61857060-61857079 | Msa0175740:intron | 25.0% |
| !!! | TCCTTTTTTGAAAAAGCATT+AGG | + | chr1_4:61857095-61857114 | Msa0175740:intron | 25.0% |
| !!! | CCTTTTTTGAAAAAGCATTA+GGG | + | chr1_4:61857096-61857115 | Msa0175740:intron | 25.0% |
| ! | AACTAAATATCTTTGTTCCT+AGG | + | chr1_4:61857181-61857200 | Msa0175740:intron | 25.0% |
| ! | ATCTAAATTTACTGGATGAT+GGG | - | chr1_4:61857215-61857234 | None:intergenic | 25.0% |
| ! | AGCAAAACATCTAAATTTAC+TGG | - | chr1_4:61857223-61857242 | None:intergenic | 25.0% |
| ! | TTCATGAAATGATTGTTATC+TGG | + | chr1_4:61857273-61857292 | Msa0175740:intron | 25.0% |
| ! | GTGTTTGATGAAGAAAAAAA+AGG | - | chr1_4:61857350-61857369 | None:intergenic | 25.0% |
| ! | GCTATCAACATCATTTAATA+AGG | - | chr1_4:61857542-61857561 | None:intergenic | 25.0% |
| AGACAGAGTAAAAACAATGA+TGG | - | chr1_4:61853374-61853393 | None:intergenic | 30.0% | |
| !!! | TCATTGTTTTTACTCTGTCT+TGG | + | chr1_4:61853374-61853393 | Msa0175740:intron | 30.0% |
| !!! | TAAGCACTTTTGAGATTGAT+TGG | + | chr1_4:61853444-61853463 | Msa0175740:intron | 30.0% |
| TAAGAAGAAAACAAGAAAGG+AGG | + | chr1_4:61853619-61853638 | Msa0175740:CDS | 30.0% | |
| GTAAGGTAAGGTTTATCAAA+TGG | - | chr1_4:61853823-61853842 | None:intergenic | 30.0% | |
| TAAATCTGTACAAAGTACAC+GGG | - | chr1_4:61853981-61854000 | None:intergenic | 30.0% | |
| !! | TCAAACTACAGAATGGATTA+TGG | + | chr1_4:61854057-61854076 | Msa0175740:intron | 30.0% |
| !! | CAAACTACAGAATGGATTAT+GGG | + | chr1_4:61854058-61854077 | Msa0175740:intron | 30.0% |
| TTACGAGGAAAAATTAGAAG+AGG | + | chr1_4:61854144-61854163 | Msa0175740:CDS | 30.0% | |
| CATCCTTTAAACAAAAACGT+AGG | + | chr1_4:61854183-61854202 | Msa0175740:intron | 30.0% | |
| !! | CAACCTACGTTTTTGTTTAA+AGG | - | chr1_4:61854189-61854208 | None:intergenic | 30.0% |
| CTTTAAACAAAAACGTAGGT+TGG | + | chr1_4:61854187-61854206 | Msa0175740:intron | 30.0% | |
| AGGGTTATCTGACTATTATT+AGG | - | chr1_4:61854265-61854284 | None:intergenic | 30.0% | |
| !!! | TCAGATAACCCTTATTTTAG+TGG | + | chr1_4:61854273-61854292 | Msa0175740:intron | 30.0% |
| !!! | CAGATAACCCTTATTTTAGT+GGG | + | chr1_4:61854274-61854293 | Msa0175740:intron | 30.0% |
| !!! | AGATAACCCTTATTTTAGTG+GGG | + | chr1_4:61854275-61854294 | Msa0175740:intron | 30.0% |
| TTTAGTGGGGATAATAATCA+TGG | + | chr1_4:61854288-61854307 | Msa0175740:intron | 30.0% | |
| TAGTGTTGTGAATTATGAAG+TGG | + | chr1_4:61854584-61854603 | Msa0175740:intron | 30.0% | |
| CGAGATATATGAATACATCT+AGG | - | chr1_4:61854646-61854665 | None:intergenic | 30.0% | |
| TTGAGTTAAGATTGCATTCT+TGG | + | chr1_4:61854759-61854778 | Msa0175740:intron | 30.0% | |
| !! | ACTCATTTTAGAAGATACAG+GGG | - | chr1_4:61854963-61854982 | None:intergenic | 30.0% |
| !! | GACTCATTTTAGAAGATACA+GGG | - | chr1_4:61854964-61854983 | None:intergenic | 30.0% |
| !! | TGACTCATTTTAGAAGATAC+AGG | - | chr1_4:61854965-61854984 | None:intergenic | 30.0% |
| AAATAAAAGGACAGTTGAGA+GGG | - | chr1_4:61855004-61855023 | None:intergenic | 30.0% | |
| AAAATAAAAGGACAGTTGAG+AGG | - | chr1_4:61855005-61855024 | None:intergenic | 30.0% | |
| GCATGTTGCCTAAAAATAAA+AGG | - | chr1_4:61855017-61855036 | None:intergenic | 30.0% | |
| TACACATGCATCTAATAATG+TGG | + | chr1_4:61855194-61855213 | Msa0175740:intron | 30.0% | |
| ! | TGGAATAATGTTTTCAGCAA+AGG | - | chr1_4:61855280-61855299 | None:intergenic | 30.0% |
| CAGATATCAAATTACTTCTC+AGG | + | chr1_4:61855547-61855566 | Msa0175740:intron | 30.0% | |
| AATCAAACAAGCTAATGGTA+GGG | - | chr1_4:61855709-61855728 | None:intergenic | 30.0% | |
| AAATCAAACAAGCTAATGGT+AGG | - | chr1_4:61855710-61855729 | None:intergenic | 30.0% | |
| AGCAAAATCAAACAAGCTAA+TGG | - | chr1_4:61855714-61855733 | None:intergenic | 30.0% | |
| AGAAGAATTAAGATTGGAGA+TGG | - | chr1_4:61855750-61855769 | None:intergenic | 30.0% | |
| ACAACAATTTGTGAATGCAA+TGG | - | chr1_4:61855788-61855807 | None:intergenic | 30.0% | |
| GAATTTCACAACCTCAAAAT+TGG | + | chr1_4:61855925-61855944 | Msa0175740:intron | 30.0% | |
| ! | ATATCAAAGCTCCAATTTTG+AGG | - | chr1_4:61855939-61855958 | None:intergenic | 30.0% |
| AGTGAGTTAATAAGTCAGTT+GGG | - | chr1_4:61856139-61856158 | None:intergenic | 30.0% | |
| AAGTGAGTTAATAAGTCAGT+TGG | - | chr1_4:61856140-61856159 | None:intergenic | 30.0% | |
| !! | CCCTCATTTGTTACTTATTT+TGG | + | chr1_4:61856165-61856184 | Msa0175740:intron | 30.0% |
| !!! | GTTTCCATGCAATTGTTTTT+TGG | + | chr1_4:61856187-61856206 | Msa0175740:intron | 30.0% |
| TTGACCAAAAAACAATTGCA+TGG | - | chr1_4:61856194-61856213 | None:intergenic | 30.0% | |
| !!! | AATTGTTTTTTGGTCAATGC+AGG | + | chr1_4:61856197-61856216 | Msa0175740:intron | 30.0% |
| AAAATGGTTAAGCATTACCT+AGG | - | chr1_4:61856474-61856493 | None:intergenic | 30.0% | |
| ! | CTATAAGATCTTTTCCATGT+TGG | - | chr1_4:61856625-61856644 | None:intergenic | 30.0% |
| ATTACTTAGCAACTGATTGA+CGG | + | chr1_4:61856831-61856850 | Msa0175740:intron | 30.0% | |
| GTGTAGTTATTTATACTGCT+CGG | + | chr1_4:61856858-61856877 | Msa0175740:intron | 30.0% | |
| AGATTACAATCATTATGAGC+TGG | - | chr1_4:61856916-61856935 | None:intergenic | 30.0% | |
| !! | TGGAAAATGAACTTGTTAAG+TGG | - | chr1_4:61856998-61857017 | None:intergenic | 30.0% |
| !!! | CCCTAATGCTTTTTCAAAAA+AGG | - | chr1_4:61857099-61857118 | None:intergenic | 30.0% |
| CATCTAAATTTACTGGATGA+TGG | - | chr1_4:61857216-61857235 | None:intergenic | 30.0% | |
| TGAAATGATTGTTATCTGGT+TGG | + | chr1_4:61857277-61857296 | Msa0175740:intron | 30.0% | |
| ! | GTTGATTTACAGCACCAAAT+TGG | + | chr1_4:61853263-61853282 | Msa0175740:CDS | 35.0% |
| TATCCATGAACTCACCAATT+TGG | - | chr1_4:61853280-61853299 | None:intergenic | 35.0% | |
| GAATTTCACATCATTTCCTC+TGG | + | chr1_4:61853683-61853702 | Msa0175740:CDS | 35.0% | |
| TCTTTCAACCTGTTGAGAAT+TGG | + | chr1_4:61853944-61853963 | Msa0175740:intron | 35.0% | |
| TACATGGTATATTGTCTGAC+TGG | + | chr1_4:61854027-61854046 | Msa0175740:intron | 35.0% | |
| ACATGGTATATTGTCTGACT+GGG | + | chr1_4:61854028-61854047 | Msa0175740:intron | 35.0% | |
| GGAATACTCAAACTACAGAA+TGG | + | chr1_4:61854050-61854069 | Msa0175740:intron | 35.0% | |
| TTGCATACCTACTTGTTCAA+TGG | + | chr1_4:61854380-61854399 | Msa0175740:intron | 35.0% | |
| TTCATAGCCATTGAACAAGT+AGG | - | chr1_4:61854390-61854409 | None:intergenic | 35.0% | |
| ! | ATTCTGTGTCTATGGCTTTA+CGG | - | chr1_4:61854672-61854691 | None:intergenic | 35.0% |
| TGATGTTCCTGCATATCATT+TGG | + | chr1_4:61854711-61854730 | Msa0175740:intron | 35.0% | |
| GTCATATCCAAATGATATGC+AGG | - | chr1_4:61854721-61854740 | None:intergenic | 35.0% | |
| CTGAGATAGTAGAAGAAAGA+AGG | - | chr1_4:61855039-61855058 | None:intergenic | 35.0% | |
| !! | ATTGGCTCTCATCTGTATTT+TGG | - | chr1_4:61855333-61855352 | None:intergenic | 35.0% |
| ATACAGATGAGAGCCAATTA+TGG | + | chr1_4:61855335-61855354 | Msa0175740:intron | 35.0% | |
| ! | AGTGGTATATTTTCAGCAAC+AGG | + | chr1_4:61855495-61855514 | Msa0175740:intron | 35.0% |
| GTGTGAAAAGGAAGAACAAA+AGG | - | chr1_4:61855659-61855678 | None:intergenic | 35.0% | |
| ! | GAGCTTTGATATCAGTTGAT+AGG | + | chr1_4:61855947-61855966 | Msa0175740:intron | 35.0% |
| !! | TGATATCAGTTGATAGGAAC+TGG | + | chr1_4:61855953-61855972 | Msa0175740:intron | 35.0% |
| AATGGAAAGGAGAGACTAAA+GGG | - | chr1_4:61856088-61856107 | None:intergenic | 35.0% | |
| TAATGGAAAGGAGAGACTAA+AGG | - | chr1_4:61856089-61856108 | None:intergenic | 35.0% | |
| ! | AAAACAACTGACTCTGAAAG+TGG | + | chr1_4:61856291-61856310 | Msa0175740:CDS | 35.0% |
| TCTGAAAGTGGTATTGTTGT+GGG | + | chr1_4:61856303-61856322 | Msa0175740:CDS | 35.0% | |
| !!! | GAGCTTCTCTTTTTTGAAAG+TGG | - | chr1_4:61856401-61856420 | None:intergenic | 35.0% |
| AAAAGAGAAGCTCAGAGAAA+CGG | + | chr1_4:61856408-61856427 | Msa0175740:CDS | 35.0% | |
| ! | CATGTTGGTGCAAATTTTGA+TGG | - | chr1_4:61856610-61856629 | None:intergenic | 35.0% |
| CATCAAAATTTGCACCAACA+TGG | + | chr1_4:61856608-61856627 | Msa0175740:intron | 35.0% | |
| GAATGAACAAGCAAAGAATG+TGG | - | chr1_4:61857018-61857037 | None:intergenic | 35.0% | |
| GCTTGTTCATTCTCTATTCT+CGG | + | chr1_4:61857026-61857045 | Msa0175740:intron | 35.0% | |
| AGTTTCTTCATAGGTGCATT+AGG | + | chr1_4:61857069-61857088 | Msa0175740:intron | 35.0% | |
| GTTTCTTCATAGGTGCATTA+GGG | + | chr1_4:61857070-61857089 | Msa0175740:intron | 35.0% | |
| ATGATTGTTATCTGGTTGGT+TGG | + | chr1_4:61857281-61857300 | Msa0175740:intron | 35.0% | |
| TGCTTTGCTTGCAGAAATAA+TGG | + | chr1_4:61857448-61857467 | Msa0175740:intron | 35.0% | |
| ! | TGCAGAAATAATGGAATTGC+AGG | + | chr1_4:61857457-61857476 | Msa0175740:intron | 35.0% |
| ! | GCAGAAATAATGGAATTGCA+GGG | + | chr1_4:61857458-61857477 | Msa0175740:intron | 35.0% |
| TTTACTCTGTCTTGGCAACT+AGG | + | chr1_4:61853382-61853401 | Msa0175740:intron | 40.0% | |
| TTACTCTGTCTTGGCAACTA+GGG | + | chr1_4:61853383-61853402 | Msa0175740:intron | 40.0% | |
| !!! | GCACTTTTGAGATTGATTGG+TGG | + | chr1_4:61853447-61853466 | Msa0175740:intron | 40.0% |
| GAGAATGAATGCATGACTTC+AGG | - | chr1_4:61853557-61853576 | None:intergenic | 40.0% | |
| ATGTCTACATACTCACGCTT+AGG | - | chr1_4:61853909-61853928 | None:intergenic | 40.0% | |
| ACCTGTTGAGAATTGGATTG+TGG | + | chr1_4:61853951-61853970 | Msa0175740:intron | 40.0% | |
| ACCACAATCCAATTCTCAAC+AGG | - | chr1_4:61853955-61853974 | None:intergenic | 40.0% | |
| CATGGTATATTGTCTGACTG+GGG | + | chr1_4:61854029-61854048 | Msa0175740:intron | 40.0% | |
| ACAGAGCTTTCCTATTTGTG+CGG | + | chr1_4:61854537-61854556 | Msa0175740:intron | 40.0% | |
| AACTACCATACCGCACAAAT+AGG | - | chr1_4:61854550-61854569 | None:intergenic | 40.0% | |
| TATTTGTGCGGTATGGTAGT+TGG | + | chr1_4:61854549-61854568 | Msa0175740:intron | 40.0% | |
| GCAGGAACATCAAAACAGAA+AGG | - | chr1_4:61854703-61854722 | None:intergenic | 40.0% | |
| TAAGATTGCATTCTTGGCCT+AGG | + | chr1_4:61854765-61854784 | Msa0175740:intron | 40.0% | |
| CTCAAAGGTTCCTGATATAG+GGG | - | chr1_4:61854915-61854934 | None:intergenic | 40.0% | |
| CCTCAAAGGTTCCTGATATA+GGG | - | chr1_4:61854916-61854935 | None:intergenic | 40.0% | |
| CCTATATCAGGAACCTTTGA+GGG | + | chr1_4:61854914-61854933 | Msa0175740:intron | 40.0% | |
| AGTATTGTTAGGTGTCCATC+AGG | - | chr1_4:61855106-61855125 | None:intergenic | 40.0% | |
| !!! | AGTTTTGCGGGAGTATTGTT+AGG | - | chr1_4:61855117-61855136 | None:intergenic | 40.0% |
| !! | GCTATTGTTGTGAGCATTGA+AGG | - | chr1_4:61855378-61855397 | None:intergenic | 40.0% |
| ! | TGTTCTTCCTTTTCACACTC+CGG | + | chr1_4:61855661-61855680 | Msa0175740:intron | 40.0% |
| GAACGAAAAAGATGCAAGAC+AGG | - | chr1_4:61855687-61855706 | None:intergenic | 40.0% | |
| TGTGAATGCAATGGTGCTTA+CGG | - | chr1_4:61855779-61855798 | None:intergenic | 40.0% | |
| TGAACAGAGAAAGATAGCTG+AGG | - | chr1_4:61855817-61855836 | None:intergenic | 40.0% | |
| CTTTCTCTGTTCACTTTGCT+TGG | + | chr1_4:61855824-61855843 | Msa0175740:intron | 40.0% | |
| AAGAAAGTAGCAGAGCAACT+GGG | - | chr1_4:61855877-61855896 | None:intergenic | 40.0% | |
| AAAGAAAGTAGCAGAGCAAC+TGG | - | chr1_4:61855878-61855897 | None:intergenic | 40.0% | |
| TACTATGTATTTGAGAGGCC+CGG | + | chr1_4:61856021-61856040 | Msa0175740:intron | 40.0% | |
| ! | TTGTTTTCTTCCTACCCTTG+TGG | - | chr1_4:61856278-61856297 | None:intergenic | 40.0% |
| ! | CTCTGAAAGTGGTATTGTTG+TGG | + | chr1_4:61856302-61856321 | Msa0175740:CDS | 40.0% |
| ! | ATCATAATGTTGCTTAGGGG+AGG | + | chr1_4:61856574-61856593 | Msa0175740:intron | 40.0% |
| ! | TCATAATGTTGCTTAGGGGA+GGG | + | chr1_4:61856575-61856594 | Msa0175740:intron | 40.0% |
| !! | TAGGGTTATTAGTCTTGTGC+TGG | + | chr1_4:61856676-61856695 | Msa0175740:intron | 40.0% |
| !! | GCATTAGGGTATCGTATTTG+TGG | + | chr1_4:61857110-61857129 | Msa0175740:intron | 40.0% |
| TGTGTAAAGACGAGATAGAG+AGG | - | chr1_4:61857145-61857164 | None:intergenic | 40.0% | |
| GCTAAAAAACGCTGCAAGTA+AGG | + | chr1_4:61857240-61857259 | Msa0175740:intron | 40.0% | |
| TTCTGCAAGCAAAGCATGAA+TGG | - | chr1_4:61857444-61857463 | None:intergenic | 40.0% | |
| GGAATTGCAGGGAAAATTTG+AGG | + | chr1_4:61857469-61857488 | Msa0175740:CDS | 40.0% | |
| ATTGCAGGGAAAATTTGAGG+AGG | + | chr1_4:61857472-61857491 | Msa0175740:CDS | 40.0% | |
| !! | AATGATGTTGATAGCAGCCA+AGG | + | chr1_4:61857547-61857566 | Msa0175740:exon | 40.0% |
| AAGAAAAGAACCGTCAACCT+TGG | - | chr1_4:61857567-61857586 | None:intergenic | 40.0% | |
| ! | AGGTTGACGGTTCTTTTCTT+TGG | + | chr1_4:61857567-61857586 | Msa0175740:three_prime_UTR | 40.0% |
| ! | TTGACGGTTCTTTTCTTTGG+AGG | + | chr1_4:61857570-61857589 | Msa0175740:three_prime_UTR | 40.0% |
| !! | GGTTCTTTTCTTTGGAGGAA+GGG | + | chr1_4:61857575-61857594 | Msa0175740:three_prime_UTR | 40.0% |
| GCACCAAATTGGTGAGTTCA+TGG | + | chr1_4:61853274-61853293 | Msa0175740:intron | 45.0% | |
| TGAATGCATGACTTCAGGCA+TGG | - | chr1_4:61853552-61853571 | None:intergenic | 45.0% | |
| GGAGACGATGACTGCTTAAT+TGG | + | chr1_4:61853704-61853723 | Msa0175740:CDS | 45.0% | |
| ATACTCACGCTTAGGAGGTA+AGG | - | chr1_4:61853901-61853920 | None:intergenic | 45.0% | |
| TCTACATACTCACGCTTAGG+AGG | - | chr1_4:61853906-61853925 | None:intergenic | 45.0% | |
| GATGCCATCAAAGTAGACTG+AGG | + | chr1_4:61854080-61854099 | Msa0175740:CDS | 45.0% | |
| CCAACCTCAGTCTACTTTGA+TGG | - | chr1_4:61854087-61854106 | None:intergenic | 45.0% | |
| CCATCAAAGTAGACTGAGGT+TGG | + | chr1_4:61854084-61854103 | Msa0175740:CDS | 45.0% | |
| TCAAAGTAGACTGAGGTTGG+AGG | + | chr1_4:61854087-61854106 | Msa0175740:CDS | 45.0% | |
| CGACTATGTAACTGCTTACG+AGG | + | chr1_4:61854129-61854148 | Msa0175740:CDS | 45.0% | |
| GCTTTCCTATTTGTGCGGTA+TGG | + | chr1_4:61854542-61854561 | Msa0175740:intron | 45.0% | |
| !!! | AGTCACTTTTCATGCTGCCT+AGG | - | chr1_4:61854785-61854804 | None:intergenic | 45.0% |
| GCACTATACAACTCCTCATC+AGG | + | chr1_4:61854833-61854852 | Msa0175740:intron | 45.0% | |
| TCTCTCTTTCGTTCCTGATG+AGG | - | chr1_4:61854849-61854868 | None:intergenic | 45.0% | |
| CCCTATATCAGGAACCTTTG+AGG | + | chr1_4:61854913-61854932 | Msa0175740:intron | 45.0% | |
| CCCTCAAAGGTTCCTGATAT+AGG | - | chr1_4:61854917-61854936 | None:intergenic | 45.0% | |
| TTAGAAGATACAGGGGCCAA+TGG | - | chr1_4:61854956-61854975 | None:intergenic | 45.0% | |
| !! | TTGTGAGCATTGAAGGTCCA+TGG | - | chr1_4:61855371-61855390 | None:intergenic | 45.0% |
| TACCACTGTTGCTGTAGCTA+TGG | - | chr1_4:61855482-61855501 | None:intergenic | 45.0% | |
| TAACTCGCCATAATGAGCCA+TGG | + | chr1_4:61855586-61855605 | Msa0175740:intron | 45.0% | |
| GAAAAAGATGCAAGACAGGC+CGG | - | chr1_4:61855683-61855702 | None:intergenic | 45.0% | |
| !! | TTTGTAAAGGGCGGTGTTGT+GGG | - | chr1_4:61856053-61856072 | None:intergenic | 45.0% |
| !! | TTTTGTAAAGGGCGGTGTTG+TGG | - | chr1_4:61856054-61856073 | None:intergenic | 45.0% |
| AGAAGCTCAGAGAAACGGTA+TGG | + | chr1_4:61856413-61856432 | Msa0175740:intron | 45.0% | |
| !! | GATGATGGGTTGTGAATCCT+AGG | - | chr1_4:61857201-61857220 | None:intergenic | 45.0% |
| AACGCTGCAAGTAAGGTTTC+TGG | + | chr1_4:61857247-61857266 | Msa0175740:intron | 45.0% | |
| ! | TTGATAGCAGCCAAGGTTGA+CGG | + | chr1_4:61857554-61857573 | Msa0175740:three_prime_UTR | 45.0% |
| !! | CGGTTCTTTTCTTTGGAGGA+AGG | + | chr1_4:61857574-61857593 | Msa0175740:three_prime_UTR | 45.0% |
| TAAGCAGTCATCGTCTCCAG+AGG | - | chr1_4:61853702-61853721 | None:intergenic | 50.0% | |
| ACCAAGTGCTTAGCACATGG+AGG | - | chr1_4:61854503-61854522 | None:intergenic | 50.0% | |
| AGCACCAAGTGCTTAGCACA+TGG | - | chr1_4:61854506-61854525 | None:intergenic | 50.0% | |
| CCAATGGTTAAGGAGGTTGC+AGG | - | chr1_4:61854940-61854959 | None:intergenic | 50.0% | |
| CCTGCAACCTCCTTAACCAT+TGG | + | chr1_4:61854937-61854956 | Msa0175740:intron | 50.0% | |
| GATACAGGGGCCAATGGTTA+AGG | - | chr1_4:61854950-61854969 | None:intergenic | 50.0% | |
| TCTCTGACCAACAGTCCTGA+TGG | + | chr1_4:61855088-61855107 | Msa0175740:intron | 50.0% | |
| TAGGTGTCCATCAGGACTGT+TGG | - | chr1_4:61855098-61855117 | None:intergenic | 50.0% | |
| ATCAAAGATTGGGGCTCTGC+TGG | - | chr1_4:61855300-61855319 | None:intergenic | 50.0% | |
| TGAGAGCCAATTATGGCCTC+TGG | + | chr1_4:61855342-61855361 | Msa0175740:intron | 50.0% | |
| TGGACTCCAGAGGCCATAAT+TGG | - | chr1_4:61855351-61855370 | None:intergenic | 50.0% | |
| !! | ATTATGGCCTCTGGAGTCCA+TGG | + | chr1_4:61855351-61855370 | Msa0175740:intron | 50.0% |
| AGCCATAGCTACAGCAACAG+TGG | + | chr1_4:61855477-61855496 | Msa0175740:intron | 50.0% | |
| TCGCCATAATGAGCCATGGA+GGG | + | chr1_4:61855590-61855609 | Msa0175740:intron | 50.0% | |
| AGTCCCTCCATGGCTCATTA+TGG | - | chr1_4:61855596-61855615 | None:intergenic | 50.0% | |
| AGCCATGGAGGGACTAACAT+AGG | + | chr1_4:61855601-61855620 | Msa0175740:intron | 50.0% | |
| GCCATGGAGGGACTAACATA+GGG | + | chr1_4:61855602-61855621 | Msa0175740:intron | 50.0% | |
| ACCCTATGTTAGTCCCTCCA+TGG | - | chr1_4:61855606-61855625 | None:intergenic | 50.0% | |
| GGAAAGGAGAGACTAAAGGG+AGG | - | chr1_4:61856085-61856104 | None:intergenic | 50.0% | |
| AAAGAAGCCCTTGCCACAGA+AGG | + | chr1_4:61856231-61856250 | Msa0175740:CDS | 50.0% | |
| ACGGTAGTTGCACACCACAA+GGG | + | chr1_4:61856261-61856280 | Msa0175740:CDS | 50.0% | |
| TAGTTGCACACCACAAGGGT+AGG | + | chr1_4:61856265-61856284 | Msa0175740:CDS | 50.0% | |
| AGCCGCTGCGGAGAATAAAT+TGG | + | chr1_4:61856338-61856357 | Msa0175740:CDS | 50.0% | |
| GGCCAATTTATTCTCCGCAG+CGG | - | chr1_4:61856343-61856362 | None:intergenic | 50.0% | |
| ! | TAATGTTGCTTAGGGGAGGG+CGG | + | chr1_4:61856578-61856597 | Msa0175740:intron | 50.0% |
| CTCACGCTTAGGAGGTAAGG+TGG | - | chr1_4:61853898-61853917 | None:intergenic | 55.0% | |
| GCCTCCATGTGCTAAGCACT+TGG | + | chr1_4:61854499-61854518 | Msa0175740:intron | 55.0% | |
| ACATGGAGGGCCCCTATATC+AGG | + | chr1_4:61854902-61854921 | Msa0175740:intron | 55.0% | |
| ACAGGGGCCAATGGTTAAGG+AGG | - | chr1_4:61854947-61854966 | None:intergenic | 55.0% | |
| TGAAGGTCCATGGACTCCAG+AGG | - | chr1_4:61855361-61855380 | None:intergenic | 55.0% | |
| CTCGCCATAATGAGCCATGG+AGG | + | chr1_4:61855589-61855608 | Msa0175740:intron | 55.0% | |
| AGACAGGCCGGAGTGTGAAA+AGG | - | chr1_4:61855671-61855690 | None:intergenic | 55.0% | |
| CCATCCACCTTCTGTGGCAA+GGG | - | chr1_4:61856241-61856260 | None:intergenic | 55.0% | |
| TCCATCCACCTTCTGTGGCA+AGG | - | chr1_4:61856242-61856261 | None:intergenic | 55.0% | |
| TGCCACAGAAGGTGGATGGA+CGG | + | chr1_4:61856242-61856261 | Msa0175740:CDS | 55.0% | |
| TACCGTCCATCCACCTTCTG+TGG | - | chr1_4:61856247-61856266 | None:intergenic | 55.0% | |
| GACGGTAGTTGCACACCACA+AGG | + | chr1_4:61856260-61856279 | Msa0175740:CDS | 55.0% | |
| ! | AATGTTGCTTAGGGGAGGGC+GGG | + | chr1_4:61856579-61856598 | Msa0175740:intron | 55.0% |
| AGGAGGTTGCAGGCCCTCAA+AGG | - | chr1_4:61854930-61854949 | None:intergenic | 60.0% | |
| !! | CGGTGTTGTGGGAGAGTACC+GGG | - | chr1_4:61856042-61856061 | None:intergenic | 60.0% |
| !! | GCGGTGTTGTGGGAGAGTAC+CGG | - | chr1_4:61856043-61856062 | None:intergenic | 60.0% |
| GAAGCCCTTGCCACAGAAGG+TGG | + | chr1_4:61856234-61856253 | Msa0175740:CDS | 60.0% | |
| CCCTTGCCACAGAAGGTGGA+TGG | + | chr1_4:61856238-61856257 | Msa0175740:CDS | 60.0% | |
| CTCAGTTGCTCAAGCCGCTG+CGG | + | chr1_4:61856326-61856345 | Msa0175740:CDS | 60.0% | |
| ! | ATGTTGCTTAGGGGAGGGCG+GGG | + | chr1_4:61856580-61856599 | Msa0175740:intron | 60.0% |
| ! | TGTTGCTTAGGGGAGGGCGG+GGG | + | chr1_4:61856581-61856600 | Msa0175740:intron | 65.0% |
| GTTGCTTAGGGGAGGGCGGG+GGG | + | chr1_4:61856582-61856601 | Msa0175740:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 61853239 | 61857610 | 61853239 | ID=Msa0175740;Name=Msa0175740 |
| chr1_4 | mRNA | 61853239 | 61857610 | 61853239 | ID=Msa0175740-mRNA-1;Parent=Msa0175740;Name=Msa0175740-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|1|0.8|1|1|1|5|63|190 |
| chr1_4 | exon | 61853239 | 61853284 | 61853239 | ID=Msa0175740-mRNA-1:exon:19764;Parent=Msa0175740-mRNA-1 |
| chr1_4 | exon | 61853603 | 61853734 | 61853603 | ID=Msa0175740-mRNA-1:exon:19765;Parent=Msa0175740-mRNA-1 |
| chr1_4 | exon | 61854068 | 61854165 | 61854068 | ID=Msa0175740-mRNA-1:exon:19766;Parent=Msa0175740-mRNA-1 |
| chr1_4 | exon | 61856219 | 61856429 | 61856219 | ID=Msa0175740-mRNA-1:exon:19767;Parent=Msa0175740-mRNA-1 |
| chr1_4 | exon | 61857462 | 61857610 | 61857462 | ID=Msa0175740-mRNA-1:exon:19768;Parent=Msa0175740-mRNA-1 |
| chr1_4 | CDS | 61853239 | 61853284 | 61853239 | ID=Msa0175740-mRNA-1:cds;Parent=Msa0175740-mRNA-1 |
| chr1_4 | CDS | 61853603 | 61853734 | 61853603 | ID=Msa0175740-mRNA-1:cds;Parent=Msa0175740-mRNA-1 |
| chr1_4 | CDS | 61854068 | 61854165 | 61854068 | ID=Msa0175740-mRNA-1:cds;Parent=Msa0175740-mRNA-1 |
| chr1_4 | CDS | 61856219 | 61856429 | 61856219 | ID=Msa0175740-mRNA-1:cds;Parent=Msa0175740-mRNA-1 |
| chr1_4 | CDS | 61857462 | 61857547 | 61857462 | ID=Msa0175740-mRNA-1:cds;Parent=Msa0175740-mRNA-1 |
| chr1_4 | three_prime_UTR | 61857548 | 61857610 | 61857548 | ID=Msa0175740-mRNA-1:three_prime_utr;Parent=Msa0175740-mRNA-1 |
| Gene Sequence |
| Protein sequence |
