Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1029510 | XP_003624244.1 | 85.337 | 341 | 14 | 4 | 1 | 310 | 8 | 343 | 0.0 | 549 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1029510 | sp|Q56XR7|STR4A_ARATH | 43.704 | 270 | 96 | 5 | 41 | 269 | 9 | 263 | 4.25e-59 | 193 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1029510 | G7KSH3 | 85.337 | 341 | 14 | 4 | 1 | 310 | 8 | 343 | 0.0 | 549 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0647710 | Msa1029510 | 0.800452 | 1.432014e-48 | -8.615850e-47 |
| Msa0680930 | Msa1029510 | 0.829945 | 3.874433e-55 | -8.615850e-47 |
| Msa0690530 | Msa1029510 | 0.803401 | 3.548344e-49 | -8.615850e-47 |
| Msa0707270 | Msa1029510 | 0.802406 | 5.696045e-49 | -8.615850e-47 |
| Msa0829110 | Msa1029510 | 0.808411 | 3.138722e-50 | -8.615850e-47 |
| Msa0188110 | Msa1029510 | 0.853210 | 2.777023e-61 | -8.615850e-47 |
| Msa0235180 | Msa1029510 | 0.824369 | 8.376911e-54 | -8.615850e-47 |
| Msa0463140 | Msa1029510 | 0.810772 | 9.761007e-51 | -8.615850e-47 |
| Msa1029510 | Msa1035790 | 0.805796 | 1.123069e-49 | -8.615850e-47 |
| Msa1029510 | Msa1068290 | 0.800080 | 1.704245e-48 | -8.615850e-47 |
| Msa1029510 | Msa1069430 | 0.820764 | 5.772359e-53 | -8.615850e-47 |
| Msa1029510 | Msa1116850 | 0.807899 | 4.034461e-50 | -8.615850e-47 |
| Msa1029510 | Msa1117280 | 0.815946 | 7.124509e-52 | -8.615850e-47 |
| Msa1029510 | Msa1157300 | 0.840340 | 9.223709e-58 | -8.615850e-47 |
| Msa1029510 | Msa1299900 | 0.814946 | 1.189008e-51 | -8.615850e-47 |
| Msa1029510 | Msa1341790 | 0.809042 | 2.300170e-50 | -8.615850e-47 |
| Msa1029510 | Msa1356200 | 0.819583 | 1.075955e-52 | -8.615850e-47 |
| Msa1029510 | Msa1364420 | 0.825295 | 5.068541e-54 | -8.615850e-47 |
| Msa1029510 | Msa1372680 | 0.825517 | 4.490313e-54 | -8.615850e-47 |
| Msa1029510 | Msa1378840 | 0.800853 | 1.186276e-48 | -8.615850e-47 |
| Msa1029510 | Msa1426310 | 0.800561 | 1.360405e-48 | -8.615850e-47 |
| Msa0313800 | Msa1029510 | 0.812754 | 3.615719e-51 | -8.615850e-47 |
| Msa0533140 | Msa1029510 | 0.802799 | 4.725909e-49 | -8.615850e-47 |
| Msa0973380 | Msa1029510 | 0.824110 | 9.639336e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1029510 | MtrunA17_Chr7g0249921 | 85.337 | 341 | 14 | 4 | 1 | 310 | 8 | 343 | 0.0 | 549 |
| Msa1029510 | MtrunA17_Chr8g0347221 | 31.579 | 171 | 77 | 5 | 94 | 229 | 87 | 252 | 3.49e-14 | 73.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1029510 | AT3G25480.1 | 43.704 | 270 | 96 | 5 | 41 | 269 | 9 | 263 | 4.32e-60 | 193 |
| Msa1029510 | AT4G01050.1 | 28.502 | 207 | 108 | 4 | 55 | 221 | 36 | 242 | 1.23e-14 | 74.7 |
| Msa1029510 | AT4G01050.2 | 28.502 | 207 | 108 | 4 | 55 | 221 | 77 | 283 | 2.54e-14 | 73.9 |
Find 89 sgRNAs with CRISPR-Local
Find 274 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCCTCTAACTCCACCTTTAA+TGG | 0.211453 | 7_1:-62943004 | None:intergenic |
| GATGAAGAGTGGGGTGGATT+AGG | 0.226949 | 7_1:-62941950 | None:intergenic |
| AAAGAGGCCTATGCCATTAA+AGG | 0.235898 | 7_1:+62942991 | Msa1029510:CDS |
| CATCATTATTGTGGCTTTGA+TGG | 0.236184 | 7_1:-62945784 | None:intergenic |
| CTTTAGCAGAAGAGTATTTC+AGG | 0.237904 | 7_1:+62942239 | Msa1029510:CDS |
| CCATTTGTACTAAGCTCTTT+TGG | 0.255489 | 7_1:-62943653 | None:intergenic |
| TTACTCAACTAGCATCTTTC+GGG | 0.267297 | 7_1:+62945818 | Msa1029510:three_prime_UTR |
| GTCTCTTGATTTCCAACTGC+AGG | 0.319687 | 7_1:-62943737 | None:intergenic |
| ATGAAGAGTGGGGTGGATTA+GGG | 0.321855 | 7_1:-62941949 | None:intergenic |
| AGGAAGAATGTGAAGTTTCT+TGG | 0.332591 | 7_1:+62942443 | Msa1029510:CDS |
| TTATTTATGCAAAGACAATA+TGG | 0.334460 | 7_1:+62945847 | Msa1029510:three_prime_UTR |
| CTTACTCAACTAGCATCTTT+CGG | 0.340428 | 7_1:+62945817 | Msa1029510:three_prime_UTR |
| GAGCTTAGTACAAATGGAAA+TGG | 0.356545 | 7_1:+62943659 | Msa1029510:CDS |
| GGAAATCAAGAGACAGAAAA+TGG | 0.360674 | 7_1:+62943746 | Msa1029510:CDS |
| TAGTTTGAAGATGGTGAATA+AGG | 0.361256 | 7_1:+62942472 | Msa1029510:CDS |
| GATGATGGTGGCTTCAAATC+TGG | 0.362124 | 7_1:-62945754 | None:intergenic |
| CTGAAATACTCTTCTGCTAA+AGG | 0.364553 | 7_1:-62942238 | None:intergenic |
| GAGAAGAGAAAAGGGTTTAG+TGG | 0.368625 | 7_1:-62941921 | None:intergenic |
| TACAAACAATAATCTGGTTC+CGG | 0.372074 | 7_1:+62945964 | Msa1029510:three_prime_UTR |
| GCCATTAAAGGTGGAGTTAG+AGG | 0.372279 | 7_1:+62943003 | Msa1029510:CDS |
| ACCATACCATCCACCCTTGT+TGG | 0.376416 | 7_1:-62943026 | None:intergenic |
| AAACTTTACAAACAATAATC+TGG | 0.377197 | 7_1:+62945958 | Msa1029510:three_prime_UTR |
| CCAAAAGAGCTTAGTACAAA+TGG | 0.378415 | 7_1:+62943653 | Msa1029510:CDS |
| TTTGTTGTGGCAGGCTATAC+AGG | 0.378818 | 7_1:+62943577 | Msa1029510:intron |
| AGGGTTTGAGAGAAGAGAAA+AGG | 0.382445 | 7_1:-62941930 | None:intergenic |
| TAATAGCTCAGCAACTTTCA+TGG | 0.383733 | 7_1:-62942953 | None:intergenic |
| TGGGTTTGTGAAGAAAGTTT+TGG | 0.387919 | 7_1:+62942532 | Msa1029510:CDS |
| TATTGTTTGTAAAGTTTATG+AGG | 0.394566 | 7_1:-62945952 | None:intergenic |
| AGCTTAGTACAAATGGAAAT+GGG | 0.402910 | 7_1:+62943660 | Msa1029510:CDS |
| ATTATTATCACTTTGCTGAA+TGG | 0.406951 | 7_1:-62943684 | None:intergenic |
| GGGTTTGAGAGAAGAGAAAA+GGG | 0.424147 | 7_1:-62941929 | None:intergenic |
| GATTCTGCCTGCATCTGATT+CGG | 0.426819 | 7_1:-62942122 | None:intergenic |
| TATTGTGGCTTTGATGGACT+TGG | 0.435457 | 7_1:-62945778 | None:intergenic |
| GATAAGAGAGGAGTAGAGAA+AGG | 0.436917 | 7_1:-62941856 | None:intergenic |
| GGAAGAATGTGAAGTTTCTT+GGG | 0.440860 | 7_1:+62942444 | Msa1029510:CDS |
| GGGATTGAAATGGAGTTAAG+AGG | 0.444283 | 7_1:-62942075 | None:intergenic |
| TATGCAAAGACAATATGGTT+TGG | 0.445180 | 7_1:+62945852 | Msa1029510:three_prime_UTR |
| GCTGAGCTATTATTCAAGAA+TGG | 0.445604 | 7_1:+62942964 | Msa1029510:CDS |
| TGAAATACTCTTCTGCTAAA+GGG | 0.449065 | 7_1:-62942237 | None:intergenic |
| TTATTCACCATCTTCAAACT+AGG | 0.455013 | 7_1:-62942470 | None:intergenic |
| AGAATTACATACATTGGGAT+AGG | 0.455902 | 7_1:-62943834 | None:intergenic |
| TTGTTGAGGGAAATGAAGAT+GGG | 0.474755 | 7_1:+62942513 | Msa1029510:CDS |
| TGGGTCACCTAGTTTGAAGA+TGG | 0.480830 | 7_1:+62942463 | Msa1029510:CDS |
| TTTGATGGACTTGGAGATGA+TGG | 0.483199 | 7_1:-62945769 | None:intergenic |
| ATGATGGTGGCTTCAAATCT+GGG | 0.495431 | 7_1:-62945753 | None:intergenic |
| GTTGATTATAGCAAGTGAAA+AGG | 0.496143 | 7_1:-62942053 | None:intergenic |
| CGAAAGATGCTAGTTGAGTA+AGG | 0.497240 | 7_1:-62945816 | None:intergenic |
| TCAACAGCAAGGGATTGAAA+TGG | 0.497564 | 7_1:-62942085 | None:intergenic |
| TGAGGAAGGGTGGATAAGAG+AGG | 0.498193 | 7_1:-62941868 | None:intergenic |
| TTTGTTGAGGGAAATGAAGA+TGG | 0.505556 | 7_1:+62942512 | Msa1029510:CDS |
| TATTGCTAACATCATTATTG+TGG | 0.511503 | 7_1:-62945793 | None:intergenic |
| CTTCGGTTTATATGCACAGA+AGG | 0.512474 | 7_1:-62943614 | None:intergenic |
| TTCGGTTTATATGCACAGAA+GGG | 0.517398 | 7_1:-62943613 | None:intergenic |
| TCCTCAGATATCCCTGCAGT+TGG | 0.526534 | 7_1:+62943725 | Msa1029510:CDS |
| TGCATCTGATTCGGTTAAAG+TGG | 0.529141 | 7_1:-62942113 | None:intergenic |
| GGTGAATAAGGAAGCTGTGC+AGG | 0.531450 | 7_1:+62942484 | Msa1029510:CDS |
| GATGGACTTGGAGATGATGG+TGG | 0.534242 | 7_1:-62945766 | None:intergenic |
| TACGGAAATGAAAATCAGTT+CGG | 0.537626 | 7_1:+62943796 | Msa1029510:CDS |
| TTTAGTAGTTACTAAACAGC+CGG | 0.537978 | 7_1:-62945983 | None:intergenic |
| ATAAGAGAGGAGTAGAGAAA+GGG | 0.538175 | 7_1:-62941855 | None:intergenic |
| GAATTACATACATTGGGATA+GGG | 0.547832 | 7_1:-62943833 | None:intergenic |
| GATTATAGCAAGTGAAAAGG+TGG | 0.547880 | 7_1:-62942050 | None:intergenic |
| AAAGTCTGTAGAGTCCAATA+CGG | 0.562329 | 7_1:+62943778 | Msa1029510:CDS |
| GTGCAGGTTGAGTTTGTTGA+GGG | 0.563650 | 7_1:+62942500 | Msa1029510:CDS |
| TTGAGGAAAAGATGAAGAGT+GGG | 0.569638 | 7_1:-62941960 | None:intergenic |
| TAGAGGCCAACAAGGGTGGA+TGG | 0.574060 | 7_1:+62943020 | Msa1029510:CDS |
| ACTTTAACCGAATCAGATGC+AGG | 0.577187 | 7_1:+62942115 | Msa1029510:CDS |
| TGAATGTAAGGTAGTTTCGA+CGG | 0.577893 | 7_1:+62942925 | Msa1029510:intron |
| AAGTGGGTGCTTCAACAGCA+AGG | 0.586312 | 7_1:-62942096 | None:intergenic |
| AGTTGTTGGATATAAGGGAT+AGG | 0.587649 | 7_1:+62942423 | Msa1029510:intron |
| TCTCTTGATTTCCAACTGCA+GGG | 0.588072 | 7_1:-62943736 | None:intergenic |
| GGTGGAGTTAGAGGCCAACA+AGG | 0.589217 | 7_1:+62943012 | Msa1029510:CDS |
| GAGTTAGAGGCCAACAAGGG+TGG | 0.592838 | 7_1:+62943016 | Msa1029510:CDS |
| GTTGAGGAAAAGATGAAGAG+TGG | 0.603471 | 7_1:-62941961 | None:intergenic |
| CGGTTTATATGCACAGAAGG+GGG | 0.603722 | 7_1:-62943611 | None:intergenic |
| TAATAATAATAATGAGAGTG+TGG | 0.605700 | 7_1:+62943700 | Msa1029510:CDS |
| GCATCTGATTCGGTTAAAGT+GGG | 0.612589 | 7_1:-62942112 | None:intergenic |
| TACATTGGGATAGGGAGAAG+AGG | 0.613363 | 7_1:-62943825 | None:intergenic |
| TCGGTTTATATGCACAGAAG+GGG | 0.616133 | 7_1:-62943612 | None:intergenic |
| GAGGCCTATGCCATTAAAGG+TGG | 0.622499 | 7_1:+62942994 | Msa1029510:CDS |
| AGTGGGTGCTTCAACAGCAA+GGG | 0.623133 | 7_1:-62942095 | None:intergenic |
| AACTCCACCTTTAATGGCAT+AGG | 0.625494 | 7_1:-62942998 | None:intergenic |
| GGAAAAGATGAAGAGTGGGG+TGG | 0.627427 | 7_1:-62941956 | None:intergenic |
| TGTGCAGGTTGAGTTTGTTG+AGG | 0.629428 | 7_1:+62942499 | Msa1029510:CDS |
| GCTTAGTACAAATGGAAATG+GGG | 0.652478 | 7_1:+62943661 | Msa1029510:CDS |
| TCCAACTGCAGGGATATCTG+AGG | 0.656583 | 7_1:-62943726 | None:intergenic |
| CTTCTGTGCATATAAACCGA+AGG | 0.658327 | 7_1:+62943615 | Msa1029510:CDS |
| TGAGGAAAAGATGAAGAGTG+GGG | 0.671564 | 7_1:-62941959 | None:intergenic |
| GTGGAGTTAGAGGCCAACAA+GGG | 0.709307 | 7_1:+62943013 | Msa1029510:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTTAAAGAAATTTATGTA+GGG | + | chr7_1:62942627-62942646 | Msa1029510:intron | 10.0% |
| !! | CAATTTAAAGAAATTTATGT+AGG | + | chr7_1:62942626-62942645 | Msa1029510:intron | 15.0% |
| !!! | ATCAAATATTTTTAATGATC+TGG | - | chr7_1:62943202-62943221 | None:intergenic | 15.0% |
| !!! | ATATCTTAAATGTCATTTAT+AGG | + | chr7_1:62943233-62943252 | Msa1029510:intron | 15.0% |
| !! | TAACTTATATCAAACTTAAA+TGG | - | chr7_1:62943336-62943355 | None:intergenic | 15.0% |
| !! | GTATATATAAAGATTTAAAC+TGG | + | chr7_1:62943422-62943441 | Msa1029510:intron | 15.0% |
| !! | AAGAATAAAGTTCATATATT+AGG | + | chr7_1:62943552-62943571 | Msa1029510:intron | 15.0% |
| !!! | ACTCATAAATAACAAAATTT+TGG | + | chr7_1:62944156-62944175 | Msa1029510:intron | 15.0% |
| !!! | CAATTATAAAAAAACCTTTT+TGG | + | chr7_1:62945155-62945174 | Msa1029510:intron | 15.0% |
| !!! | TGAGATTTTTTTGTTGAAAT+GGG | - | chr7_1:62941987-62942006 | None:intergenic | 20.0% |
| !!! | TTGAGATTTTTTTGTTGAAA+TGG | - | chr7_1:62941988-62942007 | None:intergenic | 20.0% |
| !! | NNNNNNNNATTCACAGTTGT+TGG | + | chr7_1:62942409-62942428 | Msa1029510:intron | 20.0% |
| !! | TATAGTTCTTATGCTTTAAT+TGG | + | chr7_1:62943120-62943139 | Msa1029510:intron | 20.0% |
| !! | TGGTGATTATAATTAATTGA+CGG | - | chr7_1:62943176-62943195 | None:intergenic | 20.0% |
| !!! | TATTTTTAATGATCTGGTTT+TGG | - | chr7_1:62943196-62943215 | None:intergenic | 20.0% |
| !! | ATATCAAACTTAAATGGTTA+AGG | - | chr7_1:62943330-62943349 | None:intergenic | 20.0% |
| !! | TAAAAGATATCTACTTTACT+TGG | + | chr7_1:62943395-62943414 | Msa1029510:intron | 20.0% |
| !! | TAATAATAATAATGAGAGTG+TGG | + | chr7_1:62943700-62943719 | Msa1029510:CDS | 20.0% |
| !! | AATTATGTAATAGAACTAAC+AGG | + | chr7_1:62944076-62944095 | Msa1029510:intron | 20.0% |
| !!! | GCAAATTCGTTTTAATTTTT+TGG | - | chr7_1:62944957-62944976 | None:intergenic | 20.0% |
| !!! | TTTTCTTTTCATTTCCAAAA+AGG | - | chr7_1:62945172-62945191 | None:intergenic | 20.0% |
| !!! | TTTTTTGTATGTCATTACTA+GGG | - | chr7_1:62945544-62945563 | None:intergenic | 20.0% |
| !!! | TATGATTCTAAAACATGAAA+TGG | + | chr7_1:62945627-62945646 | Msa1029510:intron | 20.0% |
| !! | TTTCTTACATTTAAACCATT+AGG | + | chr7_1:62945673-62945692 | Msa1029510:intron | 20.0% |
| !!! | GTTCTTATTTTAACAAAGAA+TGG | - | chr7_1:62945702-62945721 | None:intergenic | 20.0% |
| !! | TTATTTATGCAAAGACAATA+TGG | + | chr7_1:62945847-62945866 | Msa1029510:three_prime_UTR | 20.0% |
| !! | TATTGTTTGTAAAGTTTATG+AGG | - | chr7_1:62945955-62945974 | None:intergenic | 20.0% |
| !! | AAACTTTACAAACAATAATC+TGG | + | chr7_1:62945958-62945977 | Msa1029510:three_prime_UTR | 20.0% |
| !! | TTTAGTGGTGAAAAGTTTTT+GGG | - | chr7_1:62941909-62941928 | None:intergenic | 25.0% |
| !!! | GAGATTTTTTTGTTGAAATG+GGG | - | chr7_1:62941986-62942005 | None:intergenic | 25.0% |
| ! | TCTGTTGAAAAAATCATCAA+TGG | - | chr7_1:62942170-62942189 | None:intergenic | 25.0% |
| !!! | AAATACTGTTGTCTTTGTTT+TGG | + | chr7_1:62942574-62942593 | Msa1029510:intron | 25.0% |
| ! | TTATAATCTCATAGCATGTT+TGG | - | chr7_1:62942821-62942840 | None:intergenic | 25.0% |
| !! | TTGTTACTCTTTTGAATGTA+AGG | + | chr7_1:62942913-62942932 | Msa1029510:intron | 25.0% |
| !!! | ATTCAAGAATGGTTTTAAAG+AGG | + | chr7_1:62942975-62942994 | Msa1029510:CDS | 25.0% |
| !! | AATAAAATGCAGAAGTATGT+TGG | - | chr7_1:62943098-62943117 | None:intergenic | 25.0% |
| ! | GGTGTAAATGTTTACATAAT+CGG | - | chr7_1:62943274-62943293 | None:intergenic | 25.0% |
| !! | GTTTAATTTCAAAACACAGT+TGG | - | chr7_1:62943295-62943314 | None:intergenic | 25.0% |
| !!! | GATATCTTTTAAAGCTTCAT+AGG | - | chr7_1:62943386-62943405 | None:intergenic | 25.0% |
| ! | GATATTCAATTATCAGATCT+TGG | + | chr7_1:62943444-62943463 | Msa1029510:intron | 25.0% |
| ! | ATTATTATCACTTTGCTGAA+TGG | - | chr7_1:62943687-62943706 | None:intergenic | 25.0% |
| ! | AGTTGAGAATTACATACATT+GGG | - | chr7_1:62943842-62943861 | None:intergenic | 25.0% |
| !!! | TTGTTATTTATGAGTGATAC+AGG | - | chr7_1:62944151-62944170 | None:intergenic | 25.0% |
| !!! | AAAATTTTGGTATGTCATGT+TGG | + | chr7_1:62944169-62944188 | Msa1029510:intron | 25.0% |
| ! | TAATTAGTTGGATCGAAATA+TGG | - | chr7_1:62944844-62944863 | None:intergenic | 25.0% |
| ! | AGATCTAGAGATTAATTAGT+TGG | - | chr7_1:62944856-62944875 | None:intergenic | 25.0% |
| ! | AGTGAAATCATTTACAAAGT+TGG | + | chr7_1:62945417-62945436 | Msa1029510:intron | 25.0% |
| ! | GTGAAATCATTTACAAAGTT+GGG | + | chr7_1:62945418-62945437 | Msa1029510:intron | 25.0% |
| !!! | ATGAATGTTTTGACAAAGTA+AGG | - | chr7_1:62945520-62945539 | None:intergenic | 25.0% |
| !!! | CTTTTTTGTATGTCATTACT+AGG | - | chr7_1:62945545-62945564 | None:intergenic | 25.0% |
| ! | AGTAATGACATACAAAAAAG+TGG | + | chr7_1:62945545-62945564 | Msa1029510:intron | 25.0% |
| ! | AAGAGAGATAAAAATGATGA+AGG | - | chr7_1:62945726-62945745 | None:intergenic | 25.0% |
| ! | TATTGCTAACATCATTATTG+TGG | - | chr7_1:62945796-62945815 | None:intergenic | 25.0% |
| !!! | TGAAAAGTTTTTGGGTTTTG+GGG | - | chr7_1:62941901-62941920 | None:intergenic | 30.0% |
| !!! | GTGAAAAGTTTTTGGGTTTT+GGG | - | chr7_1:62941902-62941921 | None:intergenic | 30.0% |
| ! | GTTTAGTGGTGAAAAGTTTT+TGG | - | chr7_1:62941910-62941929 | None:intergenic | 30.0% |
| !!! | TTTTGAAGAGGTTTTGAAGT+GGG | - | chr7_1:62942027-62942046 | None:intergenic | 30.0% |
| !!! | TTTTTGAAGAGGTTTTGAAG+TGG | - | chr7_1:62942028-62942047 | None:intergenic | 30.0% |
| !!! | AAAAGGTGGATTTTTTGAAG+AGG | - | chr7_1:62942039-62942058 | None:intergenic | 30.0% |
| GTTGATTATAGCAAGTGAAA+AGG | - | chr7_1:62942056-62942075 | None:intergenic | 30.0% | |
| TGAAATACTCTTCTGCTAAA+GGG | - | chr7_1:62942240-62942259 | None:intergenic | 30.0% | |
| ATTCACAGTTGTTGGATATA+AGG | + | chr7_1:62942417-62942436 | Msa1029510:intron | 30.0% | |
| TTCACAGTTGTTGGATATAA+GGG | + | chr7_1:62942418-62942437 | Msa1029510:intron | 30.0% | |
| TTATTCACCATCTTCAAACT+AGG | - | chr7_1:62942473-62942492 | None:intergenic | 30.0% | |
| TAGTTTGAAGATGGTGAATA+AGG | + | chr7_1:62942472-62942491 | Msa1029510:CDS | 30.0% | |
| AGTTACATTCATTCCTAAGT+TGG | - | chr7_1:62943499-62943518 | None:intergenic | 30.0% | |
| TGTAACTATGTATCTGATTG+TGG | + | chr7_1:62943512-62943531 | Msa1029510:intron | 30.0% | |
| CATATATTAGGTCTTTGTTG+TGG | + | chr7_1:62943564-62943583 | Msa1029510:intron | 30.0% | |
| AGCTTAGTACAAATGGAAAT+GGG | + | chr7_1:62943660-62943679 | Msa1029510:CDS | 30.0% | |
| !! | ACTGATTTTCATTTCCGTAT+TGG | - | chr7_1:62943795-62943814 | None:intergenic | 30.0% |
| TACGGAAATGAAAATCAGTT+CGG | + | chr7_1:62943796-62943815 | Msa1029510:CDS | 30.0% | |
| GAATTACATACATTGGGATA+GGG | - | chr7_1:62943836-62943855 | None:intergenic | 30.0% | |
| AGAATTACATACATTGGGAT+AGG | - | chr7_1:62943837-62943856 | None:intergenic | 30.0% | |
| GAGTTGAGAATTACATACAT+TGG | - | chr7_1:62943843-62943862 | None:intergenic | 30.0% | |
| CATGCATTATTAGACATGAA+GGG | - | chr7_1:62944009-62944028 | None:intergenic | 30.0% | |
| ACATGCATTATTAGACATGA+AGG | - | chr7_1:62944010-62944029 | None:intergenic | 30.0% | |
| GTCTAATAATGCATGTTCAA+TGG | + | chr7_1:62944014-62944033 | Msa1029510:intron | 30.0% | |
| TCTCAAATTATTAGCGATGT+CGG | - | chr7_1:62944435-62944454 | None:intergenic | 30.0% | |
| ATTCTATTCAGTTAACCTCT+AGG | - | chr7_1:62944606-62944625 | None:intergenic | 30.0% | |
| TAACTGAATAGAATCCTTTC+AGG | + | chr7_1:62944612-62944631 | Msa1029510:intron | 30.0% | |
| AGATCTTCATAATTCCTGAA+AGG | - | chr7_1:62944629-62944648 | None:intergenic | 30.0% | |
| TCAGGAATTATGAAGATCTT+AGG | + | chr7_1:62944630-62944649 | Msa1029510:intron | 30.0% | |
| GTTTCTCTTATAGTGTTTCT+AGG | + | chr7_1:62944885-62944904 | Msa1029510:intron | 30.0% | |
| !!! | ATTTTTTGGTTGCTCTCAAA+TGG | - | chr7_1:62944943-62944962 | None:intergenic | 30.0% |
| AGTTATAGCACAAATGATGA+AGG | - | chr7_1:62944981-62945000 | None:intergenic | 30.0% | |
| TCATTTGTGCTATAACTCAT+CGG | + | chr7_1:62944984-62945003 | Msa1029510:intron | 30.0% | |
| CTAGCACAATAATTTCACTA+TGG | + | chr7_1:62945022-62945041 | Msa1029510:intron | 30.0% | |
| ATTCATTTGTGAGCACTAAA+TGG | + | chr7_1:62945097-62945116 | Msa1029510:intron | 30.0% | |
| AACAAAGAATGGAATCCTAA+TGG | - | chr7_1:62945691-62945710 | None:intergenic | 30.0% | |
| TATGCAAAGACAATATGGTT+TGG | + | chr7_1:62945852-62945871 | Msa1029510:three_prime_UTR | 30.0% | |
| ! | TACAAACAATAATCTGGTTC+CGG | + | chr7_1:62945964-62945983 | Msa1029510:three_prime_UTR | 30.0% |
| TTTAGTAGTTACTAAACAGC+CGG | - | chr7_1:62945986-62946005 | None:intergenic | 30.0% | |
| ATAAGAGAGGAGTAGAGAAA+GGG | - | chr7_1:62941858-62941877 | None:intergenic | 35.0% | |
| !!! | GGTGAAAAGTTTTTGGGTTT+TGG | - | chr7_1:62941903-62941922 | None:intergenic | 35.0% |
| TTGAGGAAAAGATGAAGAGT+GGG | - | chr7_1:62941963-62941982 | None:intergenic | 35.0% | |
| ! | TTTTTGTTGAAATGGGGTTG+AGG | - | chr7_1:62941980-62941999 | None:intergenic | 35.0% |
| GATTATAGCAAGTGAAAAGG+TGG | - | chr7_1:62942053-62942072 | None:intergenic | 35.0% | |
| !! | AGATATCCATTTTTCGTTGC+TGG | + | chr7_1:62942187-62942206 | Msa1029510:CDS | 35.0% |
| !! | GATATCCATTTTTCGTTGCT+GGG | + | chr7_1:62942188-62942207 | Msa1029510:CDS | 35.0% |
| CTGAAATACTCTTCTGCTAA+AGG | - | chr7_1:62942241-62942260 | None:intergenic | 35.0% | |
| !! | CTTTAGCAGAAGAGTATTTC+AGG | + | chr7_1:62942239-62942258 | Msa1029510:CDS | 35.0% |
| AGTTGTTGGATATAAGGGAT+AGG | + | chr7_1:62942423-62942442 | Msa1029510:intron | 35.0% | |
| AGGAAGAATGTGAAGTTTCT+TGG | + | chr7_1:62942443-62942462 | Msa1029510:CDS | 35.0% | |
| GGAAGAATGTGAAGTTTCTT+GGG | + | chr7_1:62942444-62942463 | Msa1029510:CDS | 35.0% | |
| TTTGTTGAGGGAAATGAAGA+TGG | + | chr7_1:62942512-62942531 | Msa1029510:CDS | 35.0% | |
| TTGTTGAGGGAAATGAAGAT+GGG | + | chr7_1:62942513-62942532 | Msa1029510:CDS | 35.0% | |
| ! | TGGGTTTGTGAAGAAAGTTT+TGG | + | chr7_1:62942532-62942551 | Msa1029510:CDS | 35.0% |
| !!! | TTGTGAAGAAAGTTTTGGAG+AGG | + | chr7_1:62942537-62942556 | Msa1029510:CDS | 35.0% |
| !!! | CTGTTGTCTTTGTTTTGGAT+AGG | + | chr7_1:62942579-62942598 | Msa1029510:intron | 35.0% |
| !! | GCTGTTTTCATTAGCTATCA+TGG | + | chr7_1:62942677-62942696 | Msa1029510:intron | 35.0% |
| TGAATGTAAGGTAGTTTCGA+CGG | + | chr7_1:62942925-62942944 | Msa1029510:intron | 35.0% | |
| TAATAGCTCAGCAACTTTCA+TGG | - | chr7_1:62942956-62942975 | None:intergenic | 35.0% | |
| GCTGAGCTATTATTCAAGAA+TGG | + | chr7_1:62942964-62942983 | Msa1029510:CDS | 35.0% | |
| TATCAACTAGATGCCAACTT+AGG | + | chr7_1:62943483-62943502 | Msa1029510:intron | 35.0% | |
| TTCGGTTTATATGCACAGAA+GGG | - | chr7_1:62943616-62943635 | None:intergenic | 35.0% | |
| !! | GCACTTTAGTCTTTTTCCTT+CGG | - | chr7_1:62943634-62943653 | None:intergenic | 35.0% |
| ! | CCATTTGTACTAAGCTCTTT+TGG | - | chr7_1:62943656-62943675 | None:intergenic | 35.0% |
| CCAAAAGAGCTTAGTACAAA+TGG | + | chr7_1:62943653-62943672 | Msa1029510:CDS | 35.0% | |
| GAGCTTAGTACAAATGGAAA+TGG | + | chr7_1:62943659-62943678 | Msa1029510:CDS | 35.0% | |
| GCTTAGTACAAATGGAAATG+GGG | + | chr7_1:62943661-62943680 | Msa1029510:CDS | 35.0% | |
| GGAAATCAAGAGACAGAAAA+TGG | + | chr7_1:62943746-62943765 | Msa1029510:CDS | 35.0% | |
| AAAGTCTGTAGAGTCCAATA+CGG | + | chr7_1:62943778-62943797 | Msa1029510:CDS | 35.0% | |
| CATGCATTGTTAGACATGAA+GGG | - | chr7_1:62943907-62943926 | None:intergenic | 35.0% | |
| ACATGCATTGTTAGACATGA+AGG | - | chr7_1:62943908-62943927 | None:intergenic | 35.0% | |
| TGTAATAGAACTAACAGGCA+AGG | + | chr7_1:62944081-62944100 | Msa1029510:intron | 35.0% | |
| CTTCAACAAAACATGAGCTA+AGG | - | chr7_1:62944279-62944298 | None:intergenic | 35.0% | |
| TTTGGTTAGGTGATTGGAAT+GGG | + | chr7_1:62944348-62944367 | Msa1029510:intron | 35.0% | |
| !! | TTGTTTCTAGCTATGAAGCA+CGG | - | chr7_1:62944529-62944548 | None:intergenic | 35.0% |
| ! | TAGGGTAATGTGTGTTTTGT+AGG | - | chr7_1:62944570-62944589 | None:intergenic | 35.0% |
| GGAATTATGAAGATCTTAGG+CGG | + | chr7_1:62944633-62944652 | Msa1029510:intron | 35.0% | |
| TGGAAGAGTTCAAAGTCAAA+TGG | + | chr7_1:62945042-62945061 | Msa1029510:intron | 35.0% | |
| GCTCACAAATGAATAACAGT+GGG | - | chr7_1:62945091-62945110 | None:intergenic | 35.0% | |
| TGCTCACAAATGAATAACAG+TGG | - | chr7_1:62945092-62945111 | None:intergenic | 35.0% | |
| !! | TTTCAGGTTGTGAAGTAACT+TGG | - | chr7_1:62945254-62945273 | None:intergenic | 35.0% |
| !! | CATCATTATTGTGGCTTTGA+TGG | - | chr7_1:62945787-62945806 | None:intergenic | 35.0% |
| CTTACTCAACTAGCATCTTT+CGG | + | chr7_1:62945817-62945836 | Msa1029510:three_prime_UTR | 35.0% | |
| TTACTCAACTAGCATCTTTC+GGG | + | chr7_1:62945818-62945837 | Msa1029510:three_prime_UTR | 35.0% | |
| GATAAGAGAGGAGTAGAGAA+AGG | - | chr7_1:62941859-62941878 | None:intergenic | 40.0% | |
| !!! | AAGTTTTTGGGTTTTGGGGT+GGG | - | chr7_1:62941897-62941916 | None:intergenic | 40.0% |
| !!! | AAAGTTTTTGGGTTTTGGGG+TGG | - | chr7_1:62941898-62941917 | None:intergenic | 40.0% |
| GAGAAGAGAAAAGGGTTTAG+TGG | - | chr7_1:62941924-62941943 | None:intergenic | 40.0% | |
| GGGTTTGAGAGAAGAGAAAA+GGG | - | chr7_1:62941932-62941951 | None:intergenic | 40.0% | |
| AGGGTTTGAGAGAAGAGAAA+AGG | - | chr7_1:62941933-62941952 | None:intergenic | 40.0% | |
| TGAGGAAAAGATGAAGAGTG+GGG | - | chr7_1:62941962-62941981 | None:intergenic | 40.0% | |
| GTTGAGGAAAAGATGAAGAG+TGG | - | chr7_1:62941964-62941983 | None:intergenic | 40.0% | |
| !!! | AAGAGGTTTTGAAGTGGGAT+AGG | - | chr7_1:62942022-62942041 | None:intergenic | 40.0% |
| GGGATTGAAATGGAGTTAAG+AGG | - | chr7_1:62942078-62942097 | None:intergenic | 40.0% | |
| TCAACAGCAAGGGATTGAAA+TGG | - | chr7_1:62942088-62942107 | None:intergenic | 40.0% | |
| !! | GCATCTGATTCGGTTAAAGT+GGG | - | chr7_1:62942115-62942134 | None:intergenic | 40.0% |
| !! | TGCATCTGATTCGGTTAAAG+TGG | - | chr7_1:62942116-62942135 | None:intergenic | 40.0% |
| ACTTTAACCGAATCAGATGC+AGG | + | chr7_1:62942115-62942134 | Msa1029510:CDS | 40.0% | |
| TTTCAGCCATTGATGCTTTC+AGG | + | chr7_1:62942275-62942294 | Msa1029510:intron | 40.0% | |
| !! | AAGCTTCCTGAAAGCATCAA+TGG | - | chr7_1:62942284-62942303 | None:intergenic | 40.0% |
| TAGCTATCATGGAGAGCTTA+TGG | + | chr7_1:62942688-62942707 | Msa1029510:intron | 40.0% | |
| AAAGAGGCCTATGCCATTAA+AGG | + | chr7_1:62942991-62943010 | Msa1029510:CDS | 40.0% | |
| AACTCCACCTTTAATGGCAT+AGG | - | chr7_1:62943001-62943020 | None:intergenic | 40.0% | |
| ! | TATTAGGTCTTTGTTGTGGC+AGG | + | chr7_1:62943568-62943587 | Msa1029510:intron | 40.0% |
| TCGGTTTATATGCACAGAAG+GGG | - | chr7_1:62943615-62943634 | None:intergenic | 40.0% | |
| CTTCGGTTTATATGCACAGA+AGG | - | chr7_1:62943617-62943636 | None:intergenic | 40.0% | |
| CTTCTGTGCATATAAACCGA+AGG | + | chr7_1:62943615-62943634 | Msa1029510:CDS | 40.0% | |
| TCTCTTGATTTCCAACTGCA+GGG | - | chr7_1:62943739-62943758 | None:intergenic | 40.0% | |
| GAAGGGTCACAACAGAAAAA+AGG | - | chr7_1:62943890-62943909 | None:intergenic | 40.0% | |
| AATAGAACTAACAGGCAAGG+AGG | + | chr7_1:62944084-62944103 | Msa1029510:intron | 40.0% | |
| GTGTTCTGTAATGAACTGAG+TGG | + | chr7_1:62944123-62944142 | Msa1029510:intron | 40.0% | |
| TATGCCAATCTCATGTATGC+AGG | - | chr7_1:62944196-62944215 | None:intergenic | 40.0% | |
| !! | ATGTTTTGTTGAAGCCTGGA+GGG | + | chr7_1:62944285-62944304 | Msa1029510:intron | 40.0% |
| ACCAATTCCCATTCCTTGTT+TGG | + | chr7_1:62944330-62944349 | Msa1029510:intron | 40.0% | |
| ACCAAACAAGGAATGGGAAT+TGG | - | chr7_1:62944334-62944353 | None:intergenic | 40.0% | |
| ! | TTCCCATTCCTTGTTTGGTT+AGG | + | chr7_1:62944335-62944354 | Msa1029510:intron | 40.0% |
| CACCTAACCAAACAAGGAAT+GGG | - | chr7_1:62944340-62944359 | None:intergenic | 40.0% | |
| TCACCTAACCAAACAAGGAA+TGG | - | chr7_1:62944341-62944360 | None:intergenic | 40.0% | |
| ! | TCCTTGTTTGGTTAGGTGAT+TGG | + | chr7_1:62944342-62944361 | Msa1029510:intron | 40.0% |
| TCCAATCACCTAACCAAACA+AGG | - | chr7_1:62944346-62944365 | None:intergenic | 40.0% | |
| GTTTGGTTAGGTGATTGGAA+TGG | + | chr7_1:62944347-62944366 | Msa1029510:intron | 40.0% | |
| ACTAGAAACCTATGAAGCAC+AGG | + | chr7_1:62944399-62944418 | Msa1029510:intron | 40.0% | |
| !! | TTTTGGTTGCTCTCAAATGG+AGG | - | chr7_1:62944940-62944959 | None:intergenic | 40.0% |
| !! | CCTGAACTTCTAAAGCTTTC+AGG | - | chr7_1:62945270-62945289 | None:intergenic | 40.0% |
| !! | CCTGAAAGCTTTAGAAGTTC+AGG | + | chr7_1:62945267-62945286 | Msa1029510:intron | 40.0% |
| GAGATGCACATCTTCATTCA+CGG | - | chr7_1:62945492-62945511 | None:intergenic | 40.0% | |
| !! | ATGATGGTGGCTTCAAATCT+GGG | - | chr7_1:62945756-62945775 | None:intergenic | 40.0% |
| !! | TTTGATGGACTTGGAGATGA+TGG | - | chr7_1:62945772-62945791 | None:intergenic | 40.0% |
| !! | TATTGTGGCTTTGATGGACT+TGG | - | chr7_1:62945781-62945800 | None:intergenic | 40.0% |
| CGAAAGATGCTAGTTGAGTA+AGG | - | chr7_1:62945819-62945838 | None:intergenic | 40.0% | |
| !! | ATGAAGAGTGGGGTGGATTA+GGG | - | chr7_1:62941952-62941971 | None:intergenic | 45.0% |
| GATTCTGCCTGCATCTGATT+CGG | - | chr7_1:62942125-62942144 | None:intergenic | 45.0% | |
| CTACACCCAGCAACGAAAAA+TGG | - | chr7_1:62942196-62942215 | None:intergenic | 45.0% | |
| TGGGTCACCTAGTTTGAAGA+TGG | + | chr7_1:62942463-62942482 | Msa1029510:CDS | 45.0% | |
| !! | TGTGCAGGTTGAGTTTGTTG+AGG | + | chr7_1:62942499-62942518 | Msa1029510:CDS | 45.0% |
| !! | GTGCAGGTTGAGTTTGTTGA+GGG | + | chr7_1:62942500-62942519 | Msa1029510:CDS | 45.0% |
| GCCATTAAAGGTGGAGTTAG+AGG | + | chr7_1:62943003-62943022 | Msa1029510:CDS | 45.0% | |
| GCCTCTAACTCCACCTTTAA+TGG | - | chr7_1:62943007-62943026 | None:intergenic | 45.0% | |
| ! | TTGGCATCTAGTTGATACGC+TGG | - | chr7_1:62943480-62943499 | None:intergenic | 45.0% |
| ! | TTTGTTGTGGCAGGCTATAC+AGG | + | chr7_1:62943577-62943596 | Msa1029510:intron | 45.0% |
| ATGCACAGAAGGGGGTAAAA+GGG | - | chr7_1:62943606-62943625 | None:intergenic | 45.0% | |
| TATGCACAGAAGGGGGTAAA+AGG | - | chr7_1:62943607-62943626 | None:intergenic | 45.0% | |
| CGGTTTATATGCACAGAAGG+GGG | - | chr7_1:62943614-62943633 | None:intergenic | 45.0% | |
| GTCTCTTGATTTCCAACTGC+AGG | - | chr7_1:62943740-62943759 | None:intergenic | 45.0% | |
| TACATTGGGATAGGGAGAAG+AGG | - | chr7_1:62943828-62943847 | None:intergenic | 45.0% | |
| TGGTCCTGCATACATGAGAT+TGG | + | chr7_1:62944189-62944208 | Msa1029510:intron | 45.0% | |
| GCATAATATGCCACTGATGC+AGG | + | chr7_1:62944211-62944230 | Msa1029510:intron | 45.0% | |
| AGAAATCACTCCTGCATCAG+TGG | - | chr7_1:62944224-62944243 | None:intergenic | 45.0% | |
| !! | GCTCATGTTTTGTTGAAGCC+TGG | + | chr7_1:62944281-62944300 | Msa1029510:intron | 45.0% |
| !! | CATGTTTTGTTGAAGCCTGG+AGG | + | chr7_1:62944284-62944303 | Msa1029510:intron | 45.0% |
| TGGGATGAGCACTTTACGAT+AGG | + | chr7_1:62944367-62944386 | Msa1029510:intron | 45.0% | |
| AAACCTATGAAGCACAGGCA+CGG | + | chr7_1:62944404-62944423 | Msa1029510:intron | 45.0% | |
| ! | TCAGTTAACCTCTAGGAGTC+AGG | - | chr7_1:62944599-62944618 | None:intergenic | 45.0% |
| AGTACTACCAGTCAGTCACA+GGG | - | chr7_1:62944713-62944732 | None:intergenic | 45.0% | |
| TTGTGGTGGTTGCTCTCAAA+TGG | - | chr7_1:62944750-62944769 | None:intergenic | 45.0% | |
| GAGGATAGTCAGATCACTAG+AGG | - | chr7_1:62944921-62944940 | None:intergenic | 45.0% | |
| !! | GATGATGGTGGCTTCAAATC+TGG | - | chr7_1:62945757-62945776 | None:intergenic | 45.0% |
| !! | AATTTATTTAAATCTTATAT+GGG | - | chr7_1:62945462-62945481 | None:intergenic | 5.0% |
| !! | AAATTTATTTAAATCTTATA+TGG | - | chr7_1:62945463-62945482 | None:intergenic | 5.0% |
| !! | TAAATAATTTAATAACAAAA+TGG | - | chr7_1:62945603-62945622 | None:intergenic | 5.0% |
| TGAGGAAGGGTGGATAAGAG+AGG | - | chr7_1:62941871-62941890 | None:intergenic | 50.0% | |
| !!! | TTGGGGTGGGTTTTGAGGAA+GGG | - | chr7_1:62941884-62941903 | None:intergenic | 50.0% |
| !!! | TTTGGGGTGGGTTTTGAGGA+AGG | - | chr7_1:62941885-62941904 | None:intergenic | 50.0% |
| ! | GATGAAGAGTGGGGTGGATT+AGG | - | chr7_1:62941953-62941972 | None:intergenic | 50.0% |
| GGAAAAGATGAAGAGTGGGG+TGG | - | chr7_1:62941959-62941978 | None:intergenic | 50.0% | |
| AGTGGGTGCTTCAACAGCAA+GGG | - | chr7_1:62942098-62942117 | None:intergenic | 50.0% | |
| AAGTGGGTGCTTCAACAGCA+AGG | - | chr7_1:62942099-62942118 | None:intergenic | 50.0% | |
| GGTGAATAAGGAAGCTGTGC+AGG | + | chr7_1:62942484-62942503 | Msa1029510:CDS | 50.0% | |
| GAGGCCTATGCCATTAAAGG+TGG | + | chr7_1:62942994-62943013 | Msa1029510:CDS | 50.0% | |
| GTGGAGTTAGAGGCCAACAA+GGG | + | chr7_1:62943013-62943032 | Msa1029510:CDS | 50.0% | |
| ACCATACCATCCACCCTTGT+TGG | - | chr7_1:62943029-62943048 | None:intergenic | 50.0% | |
| TCCTCAGATATCCCTGCAGT+TGG | + | chr7_1:62943725-62943744 | Msa1029510:CDS | 50.0% | |
| TCCAACTGCAGGGATATCTG+AGG | - | chr7_1:62943729-62943748 | None:intergenic | 50.0% | |
| ! | AGCACTCTTGTTGTGCCTAC+TGG | + | chr7_1:62944246-62944265 | Msa1029510:intron | 50.0% |
| ! | TCCTTGGATTAGGCATGTCC+CGG | - | chr7_1:62944502-62944521 | None:intergenic | 50.0% |
| TATGAAGCACGGACACTCCT+TGG | - | chr7_1:62944518-62944537 | None:intergenic | 50.0% | |
| CTAGGAGTCAGGAGCAACTA+GGG | - | chr7_1:62944588-62944607 | None:intergenic | 50.0% | |
| TCTAGGAGTCAGGAGCAACT+AGG | - | chr7_1:62944589-62944608 | None:intergenic | 50.0% | |
| TAGTTGCTCCTGACTCCTAG+AGG | + | chr7_1:62944588-62944607 | Msa1029510:intron | 50.0% | |
| TGCACCTTTGCTTGCTCCTT+TGG | + | chr7_1:62944668-62944687 | Msa1029510:intron | 50.0% | |
| GCACCTTTGCTTGCTCCTTT+GGG | + | chr7_1:62944669-62944688 | Msa1029510:intron | 50.0% | |
| GATCCCAAAGGAGCAAGCAA+AGG | - | chr7_1:62944675-62944694 | None:intergenic | 50.0% | |
| !! | TGCTCCTTTGGGATCCAAGT+AGG | + | chr7_1:62944680-62944699 | Msa1029510:intron | 50.0% |
| ATGGCCTACTTGGATCCCAA+AGG | - | chr7_1:62944687-62944706 | None:intergenic | 50.0% | |
| TTGGGATCCAAGTAGGCCAT+AGG | + | chr7_1:62944687-62944706 | Msa1029510:intron | 50.0% | |
| CAGTACTACCAGTCAGTCAC+AGG | - | chr7_1:62944714-62944733 | None:intergenic | 50.0% | |
| CTGTGACTGACTGGTAGTAC+TGG | + | chr7_1:62944712-62944731 | Msa1029510:intron | 50.0% | |
| ! | AAGAGGCTTGGTTGTTGTGG+TGG | - | chr7_1:62944764-62944783 | None:intergenic | 50.0% |
| CAAGCCTCTTCCCACTAAGT+GGG | + | chr7_1:62944774-62944793 | Msa1029510:intron | 50.0% | |
| AAGCCTCTTCCCACTAAGTG+GGG | + | chr7_1:62944775-62944794 | Msa1029510:intron | 50.0% | |
| AGTCAGATCACTAGAGGCAG+AGG | - | chr7_1:62944915-62944934 | None:intergenic | 50.0% | |
| ! | GATGGACTTGGAGATGATGG+TGG | - | chr7_1:62945769-62945788 | None:intergenic | 50.0% |
| !!! | GGGTTTTGGGGTGGGTTTTG+AGG | - | chr7_1:62941889-62941908 | None:intergenic | 55.0% |
| CAGGAAGCTTCGTGACGATG+CGG | + | chr7_1:62942294-62942313 | Msa1029510:intron | 55.0% | |
| GGTGGAGTTAGAGGCCAACA+AGG | + | chr7_1:62943012-62943031 | Msa1029510:CDS | 55.0% | |
| GAGTTAGAGGCCAACAAGGG+TGG | + | chr7_1:62943016-62943035 | Msa1029510:CDS | 55.0% | |
| TAGAGGCCAACAAGGGTGGA+TGG | + | chr7_1:62943020-62943039 | Msa1029510:CDS | 55.0% | |
| GCCAACAAGGGTGGATGGTA+TGG | + | chr7_1:62943025-62943044 | Msa1029510:intron | 55.0% | |
| AGCTAAGGTCACGCTCCAGT+AGG | - | chr7_1:62944264-62944283 | None:intergenic | 55.0% | |
| AAGCCTGGAGGGAAAGCGAA+TGG | + | chr7_1:62944296-62944315 | Msa1029510:intron | 55.0% | |
| AGCCTGGAGGGAAAGCGAAT+GGG | + | chr7_1:62944297-62944316 | Msa1029510:intron | 55.0% | |
| TGTCCGTGCCTGTGCTTCAT+AGG | - | chr7_1:62944410-62944429 | None:intergenic | 55.0% | |
| ! | AAGTGTTGCGTGTCCGACAC+CGG | + | chr7_1:62944480-62944499 | Msa1029510:intron | 55.0% |
| GATTAGGCATGTCCCGGTGT+CGG | - | chr7_1:62944496-62944515 | None:intergenic | 55.0% | |
| ACCGGGACATGCCTAATCCA+AGG | + | chr7_1:62944498-62944517 | Msa1029510:intron | 55.0% | |
| GCACGGACACTCCTTGGATT+AGG | - | chr7_1:62944512-62944531 | None:intergenic | 55.0% | |
| ! | GGGAAGAGGCTTGGTTGTTG+TGG | - | chr7_1:62944767-62944786 | None:intergenic | 55.0% |
| CCACTTAGTGGGAAGAGGCT+TGG | - | chr7_1:62944776-62944795 | None:intergenic | 55.0% | |
| CCAAGCCTCTTCCCACTAAG+TGG | + | chr7_1:62944773-62944792 | Msa1029510:intron | 55.0% | |
| CTCTTCCCACTAAGTGGGGT+CGG | + | chr7_1:62944779-62944798 | Msa1029510:intron | 55.0% | |
| TGTAGCCGACCCCACTTAGT+GGG | - | chr7_1:62944787-62944806 | None:intergenic | 55.0% | |
| ATGTAGCCGACCCCACTTAG+TGG | - | chr7_1:62944788-62944807 | None:intergenic | 55.0% | |
| ACTAAGTGGGGTCGGCTACA+TGG | + | chr7_1:62944787-62944806 | Msa1029510:intron | 55.0% | |
| !!! | GGGTGGGTTTTGAGGAAGGG+TGG | - | chr7_1:62941881-62941900 | None:intergenic | 60.0% |
| CTCCCATTCGCTTTCCCTCC+AGG | - | chr7_1:62944302-62944321 | None:intergenic | 60.0% | |
| GGAGGGAAAGCGAATGGGAG+TGG | + | chr7_1:62944302-62944321 | Msa1029510:intron | 60.0% | |
| AGTGTTGCGTGTCCGACACC+GGG | + | chr7_1:62944481-62944500 | Msa1029510:intron | 60.0% | |
| CACAGGGCCTATGGCCTACT+TGG | - | chr7_1:62944697-62944716 | None:intergenic | 60.0% | |
| CCAGTCAGTCACAGGGCCTA+TGG | - | chr7_1:62944706-62944725 | None:intergenic | 60.0% | |
| CCATAGGCCCTGTGACTGAC+TGG | + | chr7_1:62944703-62944722 | Msa1029510:intron | 60.0% | |
| CGACCCCACTTAGTGGGAAG+AGG | - | chr7_1:62944781-62944800 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 62941848 | 62946028 | 62941848 | ID=Msa1029510;Name=Msa1029510 |
| chr7_1 | mRNA | 62941848 | 62946028 | 62941848 | ID=Msa1029510-mRNA-1;Parent=Msa1029510;Name=Msa1029510-mRNA-1;_AED=0.05;_eAED=0.06;_QI=0|0.5|0.6|1|1|1|5|227|322 |
| chr7_1 | exon | 62941848 | 62942273 | 62941848 | ID=Msa1029510-mRNA-1:exon:13567;Parent=Msa1029510-mRNA-1 |
| chr7_1 | exon | 62942425 | 62942558 | 62942425 | ID=Msa1029510-mRNA-1:exon:13568;Parent=Msa1029510-mRNA-1 |
| chr7_1 | exon | 62942939 | 62943041 | 62942939 | ID=Msa1029510-mRNA-1:exon:13569;Parent=Msa1029510-mRNA-1 |
| chr7_1 | exon | 62943590 | 62943844 | 62943590 | ID=Msa1029510-mRNA-1:exon:13570;Parent=Msa1029510-mRNA-1 |
| chr7_1 | exon | 62945751 | 62946028 | 62945751 | ID=Msa1029510-mRNA-1:exon:13571;Parent=Msa1029510-mRNA-1 |
| chr7_1 | CDS | 62941848 | 62942273 | 62941848 | ID=Msa1029510-mRNA-1:cds;Parent=Msa1029510-mRNA-1 |
| chr7_1 | CDS | 62942425 | 62942558 | 62942425 | ID=Msa1029510-mRNA-1:cds;Parent=Msa1029510-mRNA-1 |
| chr7_1 | CDS | 62942939 | 62943041 | 62942939 | ID=Msa1029510-mRNA-1:cds;Parent=Msa1029510-mRNA-1 |
| chr7_1 | CDS | 62943590 | 62943844 | 62943590 | ID=Msa1029510-mRNA-1:cds;Parent=Msa1029510-mRNA-1 |
| chr7_1 | CDS | 62945751 | 62945801 | 62945751 | ID=Msa1029510-mRNA-1:cds;Parent=Msa1029510-mRNA-1 |
| chr7_1 | three_prime_UTR | 62945802 | 62946028 | 62945802 | ID=Msa1029510-mRNA-1:three_prime_utr;Parent=Msa1029510-mRNA-1 |
| Gene Sequence |
| Protein sequence |
