AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0973380


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0973380 MtrunA17_Chr6g0452241 85.588 340 27 3 1 335 1 323 0.0 532
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0973380 AT3G28460.1 62.006 329 99 6 8 331 7 314 4.54e-131 377
Msa0973380 AT3G28460.3 67.018 285 73 3 47 331 6 269 5.43e-131 375
Msa0973380 AT3G28460.2 58.252 309 116 7 8 309 7 309 2.18e-109 322

Find 111 sgRNAs with CRISPR-Local

Find 338 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGGACACTCTTGGCAATTTA+TGG 0.126823 6_4:-5868808 Msa0973380:CDS
ATTGCAGAATCACCCTTTCT+TGG 0.229947 6_4:-5869720 Msa0973380:CDS
CCAACGACTACATAGGTTAT+TGG 0.246833 6_4:-5871588 Msa0973380:intron
CTCGAAACTTGCCAGTTTGC+TGG 0.291298 6_4:-5868537 Msa0973380:three_prime_UTR
TGCAGCCTTTGATATATTAC+AGG 0.318111 6_4:-5871490 Msa0973380:intron
TTGCTTCTCCTTCTTCCTCT+TGG 0.323566 6_4:+5872897 None:intergenic
GGGCGTACATCCATGCTATT+TGG 0.324471 6_4:+5871534 None:intergenic
GAACGTGCTGAGCAATTTGT+AGG 0.324735 6_4:-5870632 Msa0973380:intron
GGTGAGTGAAGAAGAGGGTT+TGG 0.332965 6_4:+5873668 None:intergenic
CCTTGCTGTAGTGCAGCATT+TGG 0.339622 6_4:-5873930 Msa0973380:five_prime_UTR
TTGCCACGCACAGCCGCAAT+TGG 0.362822 6_4:+5869421 None:intergenic
AATCCGGTCACCTCTAAGTT+TGG 0.367798 6_4:+5870701 None:intergenic
TTGAAATTGTTGAAAGATGT+TGG 0.368358 6_4:+5873850 None:intergenic
TGAAGAAAGATGATTGGTTT+TGG 0.377488 6_4:+5873725 None:intergenic
AGAAGGTGAAGAAAGATGAT+TGG 0.401355 6_4:+5873719 None:intergenic
AGTTGTGTTCTGTTGAGTTA+AGG 0.403917 6_4:+5873895 None:intergenic
TACAAGTCTAACCAGCTTCC+AGG 0.407397 6_4:+5871101 None:intergenic
TACGACACATAAATTGCTTC+AGG 0.418480 6_4:-5872818 Msa0973380:intron
GCATAGTCAACTTCGGCATA+TGG 0.424658 6_4:+5869759 None:intergenic
CCTTTCACGACCTCCATCAT+GGG 0.432274 6_4:+5871513 None:intergenic
AAAAGTGTCTTCTCCAAGAA+AGG 0.432850 6_4:+5869707 None:intergenic
CTAGTCAATGGTTTCAATAC+AGG 0.433169 6_4:+5868479 None:intergenic
CAGATAACCGACAGGCGGTT+TGG 0.435800 6_4:-5868832 Msa0973380:CDS
CATAAATTGCCAAGAGTGTC+CGG 0.439452 6_4:+5868809 None:intergenic
TGTGTCGTACGAGGAGGCTT+AGG 0.446140 6_4:+5872832 None:intergenic
GATCAAACCAACCAGCAAAC+TGG 0.451982 6_4:+5868526 None:intergenic
AGAAGAGGAAGAAGAGAAGA+AGG 0.453274 6_4:+5873702 None:intergenic
TGCTGTAGTGCAGCATTTGG+CGG 0.459101 6_4:-5873927 Msa0973380:five_prime_UTR
TGTTAGTTGTTGTGAAAGTA+AGG 0.459831 6_4:+5873794 None:intergenic
AGAAGAGGGTTTGGAGGTAA+AGG 0.459927 6_4:+5873677 None:intergenic
AACTCTGATAAATTTGCTGT+TGG 0.463742 6_4:-5868728 Msa0973380:three_prime_UTR
TAACCGACAGGCGGTTTGGC+CGG 0.473328 6_4:-5868828 Msa0973380:CDS
TGCGGCTGTGCGTGGCAAAA+CGG 0.476024 6_4:-5869416 Msa0973380:CDS
ACCTTTCACGACCTCCATCA+TGG 0.477371 6_4:+5871512 None:intergenic
GACTGAATCATCAATGAATC+CGG 0.478832 6_4:+5870685 None:intergenic
TGCTTCAATTCCAACAGAAC+CGG 0.478995 6_4:+5871070 None:intergenic
TCCTTCGAAAACCGACATGC+TGG 0.483247 6_4:-5869588 Msa0973380:CDS
GAAGAGGGTGAGTGAAGAAG+AGG 0.485411 6_4:+5873662 None:intergenic
AAAATCTTGCTTGAACGGTA+TGG 0.485656 6_4:-5873328 Msa0973380:CDS
GCGGTTTGGCCGGACACTCT+TGG 0.486241 6_4:-5868818 Msa0973380:CDS
CGAGGAGGCTTAGGTTCCTC+AGG 0.487803 6_4:+5872841 None:intergenic
AAAATGTTACATGAGTTAGT+AGG 0.489474 6_4:-5868698 Msa0973380:three_prime_UTR
CGTCCAAACTTAGAGGTGAC+CGG 0.490270 6_4:-5870704 Msa0973380:CDS
GCATAGAATCAACTAGTCAA+TGG 0.494768 6_4:+5868467 None:intergenic
CTACCTAGCTTAACTCAACC+TGG 0.501335 6_4:-5873965 None:intergenic
AAGAGGGTGAGTGAAGAAGA+GGG 0.502965 6_4:+5873663 None:intergenic
ATCTGAGTTATATTGCAGCT+TGG 0.504479 6_4:-5868506 Msa0973380:three_prime_UTR
GAGTGAAGAAGAGGGTTTGG+AGG 0.508207 6_4:+5873671 None:intergenic
AGAAGTGGTGAGTGTGTTGG+AGG 0.519714 6_4:+5873756 None:intergenic
TGCAGAATCAGGAAATGGGT+TGG 0.523471 6_4:-5873365 Msa0973380:intron
CAAACTGGCAAGTTTCGAGT+TGG 0.523535 6_4:+5868541 None:intergenic
AGAAGAAGTGGTGAGTGTGT+TGG 0.525870 6_4:+5873753 None:intergenic
CATCCTTGAGACCTGGAAGC+TGG 0.527333 6_4:-5871112 Msa0973380:CDS
CTTCCAGGTCTCAAGGATGC+AGG 0.530951 6_4:+5871116 None:intergenic
AAACTTGCCAGTTTGCTGGT+TGG 0.538832 6_4:-5868533 Msa0973380:three_prime_UTR
TTAGACTTGTATAGTGGTAC+CGG 0.539201 6_4:-5871089 Msa0973380:CDS
AAAGTGTCTTCTCCAAGAAA+GGG 0.539647 6_4:+5869708 None:intergenic
GCTCCAATTGCGGCTGTGCG+TGG 0.540064 6_4:-5869424 Msa0973380:CDS
GGCAATTTATGGACCAACAT+GGG 0.542760 6_4:-5868797 Msa0973380:CDS
CCCATGATGGAGGTCGTGAA+AGG 0.545223 6_4:-5871513 Msa0973380:CDS
TATAGTGGTACCGGTTCTGT+TGG 0.546355 6_4:-5871080 Msa0973380:CDS
GAGAAGCAAAAGACAAGAGG+AGG 0.549129 6_4:-5872883 Msa0973380:CDS
AGCTGGTTAGACTTGTATAG+TGG 0.550828 6_4:-5871095 Msa0973380:CDS
CATGGATGTACGCCCCATGA+TGG 0.551284 6_4:-5871526 Msa0973380:CDS
TAACCAGCTTCCAGGTCTCA+AGG 0.553774 6_4:+5871109 None:intergenic
TCAATACCTCGGAGCATCCT+CGG 0.568075 6_4:+5871042 None:intergenic
TATTTAGTCCAAGAGGAAGA+AGG 0.569457 6_4:-5872905 Msa0973380:intron
CTTACTTGAAGAAGAGAAGA+GGG 0.574091 6_4:+5873647 None:intergenic
TTGGAGGTAAAGGTAAGAAG+AGG 0.577617 6_4:+5873687 None:intergenic
TGGTACCTGTAATATATCAA+AGG 0.580946 6_4:+5871485 None:intergenic
AGAAGCAAAAGACAAGAGGA+GGG 0.584569 6_4:-5872882 Msa0973380:CDS
AAGAGGAGGGAAACAAGTGC+AGG 0.585690 6_4:-5872869 Msa0973380:CDS
TTGGACCGACTGACTCAGTC+CGG 0.587108 6_4:+5868560 None:intergenic
ACACAACTGCTTTCTCACTA+CGG 0.589485 6_4:-5873880 Msa0973380:five_prime_UTR
GAAGTGGTGAGTGTGTTGGA+GGG 0.592049 6_4:+5873757 None:intergenic
CCAAATGCTGCACTACAGCA+AGG 0.593470 6_4:+5873930 None:intergenic
TGCTTGGATTTACCTTAACA+AGG 0.595874 6_4:+5869552 None:intergenic
TTGACTATGCGGTGTTGATG+AGG 0.601118 6_4:-5869746 Msa0973380:CDS
TGGCAATTTATGGACCAACA+TGG 0.601397 6_4:-5868798 Msa0973380:CDS
ACGACTACATAGGTTATTGG+AGG 0.601598 6_4:-5871585 Msa0973380:intron
GCTACTCTCACCAAATAGCA+TGG 0.604667 6_4:-5871544 Msa0973380:CDS
AGTCCTGCATCCTTGAGACC+TGG 0.604865 6_4:-5871119 Msa0973380:CDS
CAAATGCTGCACTACAGCAA+GGG 0.608603 6_4:+5873931 None:intergenic
AAGGAGAAGCAAAAGACAAG+AGG 0.609156 6_4:-5872886 Msa0973380:CDS
TATAATGCCAAGGCGGCTGG+TGG 0.610188 6_4:-5871143 Msa0973380:intron
ACCGACATGCTGGAATCTTG+CGG 0.612335 6_4:-5869578 Msa0973380:CDS
TCTGTAGTCAATAGCAGTGG+TGG 0.616065 6_4:-5869449 Msa0973380:intron
GGATGTACGCCCCATGATGG+AGG 0.618890 6_4:-5871523 Msa0973380:CDS
TCCGCAAGATTCCAGCATGT+CGG 0.622536 6_4:+5869577 None:intergenic
CAACACCGCATAGTCAACTT+CGG 0.627785 6_4:+5869752 None:intergenic
ACTTACTTGAAGAAGAGAAG+AGG 0.628559 6_4:+5873646 None:intergenic
TTGAACTACAGATAACCGAC+AGG 0.628650 6_4:-5868840 Msa0973380:intron
AATTTATGTGTCGTACGAGG+AGG 0.630888 6_4:+5872826 None:intergenic
TGTTCACATGCAGGAAACAG+TGG 0.638456 6_4:-5869810 Msa0973380:intron
AAGTGGTGAGTGTGTTGGAG+GGG 0.640997 6_4:+5873758 None:intergenic
TGTCCGGCCAAACCGCCTGT+CGG 0.644355 6_4:+5868825 None:intergenic
GGAATTGAAGCACTTAGCCG+AGG 0.644882 6_4:-5871059 Msa0973380:CDS
TAGTCAACTTCGGCATATGG+AGG 0.648003 6_4:+5869762 None:intergenic
GGAGGCTTAGGTTCCTCAGG+TGG 0.648801 6_4:+5872844 None:intergenic
TACCTAGCTTAACTCAACCT+GGG 0.648924 6_4:-5873964 None:intergenic
AGTGGTGGTTGCTCCAATTG+CGG 0.651380 6_4:-5869434 Msa0973380:CDS
CTTTCACGACCTCCATCATG+GGG 0.656275 6_4:+5871514 None:intergenic
GGCTGTGCGTGGCAAAACGG+AGG 0.664508 6_4:-5869413 Msa0973380:intron
GTGCAACTATTTAGTCCAAG+AGG 0.672959 6_4:-5872912 Msa0973380:intron
AGCAATTTATGTGTCGTACG+AGG 0.674970 6_4:+5872823 None:intergenic
AACTACAGATAACCGACAGG+CGG 0.677005 6_4:-5868837 Msa0973380:intron
ATATCTGTAGTCAATAGCAG+TGG 0.690189 6_4:-5869452 Msa0973380:intron
AAAACATCTGATACAACCCA+TGG 0.699216 6_4:+5870728 None:intergenic
ATATGCCGAAGTTGACTATG+CGG 0.710556 6_4:-5869757 Msa0973380:CDS
ACAAGTGCAGGATCCACCTG+AGG 0.726554 6_4:-5872857 Msa0973380:CDS
GTTCGAAGAATTTCTCAACG+CGG 0.768031 6_4:+5870651 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTAAATTACAACTTTTATA+AGG - chr6_4:5869216-5869235 Msa0973380:intron 10.0%
!!! TTAAATTACAACTTTTATAA+GGG - chr6_4:5869217-5869236 Msa0973380:intron 10.0%
!! AAAAATTTAATAAAACTTGA+TGG + chr6_4:5873484-5873503 None:intergenic 10.0%
!! AAAGTATATTAAATTTGTAA+TGG + chr6_4:5873516-5873535 None:intergenic 10.0%
!!! TTATTTTATCGAATAATTAC+CGG - chr6_4:5868904-5868923 Msa0973380:intron 15.0%
!!! AGTTTTTTAATGATTTTTTG+TGG - chr6_4:5868995-5869014 Msa0973380:intron 15.0%
!!! TTTTATCCTTTTTAAGTTAT+AGG - chr6_4:5870017-5870036 Msa0973380:intron 15.0%
!!! AATCTCATATTTTATTGTAA+TGG + chr6_4:5870086-5870105 None:intergenic 15.0%
!!! ACTTTATAGAAATTTGTTTT+TGG - chr6_4:5870779-5870798 Msa0973380:intron 15.0%
!!! TTATTTAAGATTATCTATTG+AGG + chr6_4:5871149-5871168 None:intergenic 15.0%
!!! CCATAAATGTTTTTAAATTT+GGG + chr6_4:5871933-5871952 None:intergenic 15.0%
!! AACAAATGAATTATTAGAAA+AGG - chr6_4:5872188-5872207 Msa0973380:intron 15.0%
!! AATAAAAACTGTATCAAATA+TGG + chr6_4:5872392-5872411 None:intergenic 15.0%
!! ATGTAGTAATTTCTTATTAT+TGG - chr6_4:5872741-5872760 Msa0973380:intron 15.0%
!!! TTTTTTGTGGTTTAAAATGA+TGG - chr6_4:5869008-5869027 Msa0973380:intron 20.0%
!!! TTTTTGTGGTTTAAAATGAT+GGG - chr6_4:5869009-5869028 Msa0973380:intron 20.0%
!! AATCATATAAAAACAGAAAG+AGG + chr6_4:5869179-5869198 None:intergenic 20.0%
!! TCTAAACCTATAACTTAAAA+AGG + chr6_4:5870026-5870045 None:intergenic 20.0%
!! ACGAAATAAATAACTCTTAT+TGG + chr6_4:5870152-5870171 None:intergenic 20.0%
!!! TCATATTGTTGGATATTTTA+CGG + chr6_4:5870295-5870314 None:intergenic 20.0%
!! CAATATTATCATCATATTGT+TGG + chr6_4:5870306-5870325 None:intergenic 20.0%
!! AATATGATGATAATATTGCT+AGG - chr6_4:5870308-5870327 Msa0973380:intron 20.0%
!! ATATGATGATAATATTGCTA+GGG - chr6_4:5870309-5870328 Msa0973380:intron 20.0%
!! AAACATATGCTAAATTAAGA+TGG + chr6_4:5870610-5870629 None:intergenic 20.0%
!! GAAAAAAATGCATTGTAAAT+GGG + chr6_4:5871603-5871622 None:intergenic 20.0%
!! AGAAAAAAATGCATTGTAAA+TGG + chr6_4:5871604-5871623 None:intergenic 20.0%
!!! CAATGCATTTTTTTCTTTTA+TGG - chr6_4:5871608-5871627 Msa0973380:intron 20.0%
!!! TTAACAAAAGCAAACATTTT+AGG - chr6_4:5871649-5871668 Msa0973380:intron 20.0%
!! ATGTGTAAAATGAAGTTAAA+AGG + chr6_4:5871830-5871849 None:intergenic 20.0%
!! CCCAAATTTAAAAACATTTA+TGG - chr6_4:5871930-5871949 Msa0973380:intron 20.0%
!!! GCCATAAATGTTTTTAAATT+TGG + chr6_4:5871934-5871953 None:intergenic 20.0%
!!! TGATTGAGATGTATTTTATA+TGG - chr6_4:5872463-5872482 Msa0973380:intron 20.0%
!!! ATTTAATAAAACTTGATGGT+TGG + chr6_4:5873480-5873499 None:intergenic 20.0%
! TTGAAATTGTTGAAAGATGT+TGG + chr6_4:5868573-5868592 None:intergenic 25.0%
! AGAAAAAAATCTTGCTTGAA+CGG - chr6_4:5869087-5869106 Msa0973380:intron 25.0%
! GGAAAAAAATGAAAAACCTT+TGG + chr6_4:5869158-5869177 None:intergenic 25.0%
! AAATATGAAGGACTACAAAA+AGG + chr6_4:5870055-5870074 None:intergenic 25.0%
!!! TATTTTATTGTAATGGAGCA+GGG + chr6_4:5870079-5870098 None:intergenic 25.0%
!!! ATATTTTATTGTAATGGAGC+AGG + chr6_4:5870080-5870099 None:intergenic 25.0%
!! CATATTGTTGGATATTTTAC+GGG + chr6_4:5870294-5870313 None:intergenic 25.0%
! TTTCTGATAGTTAATACTTG+AGG - chr6_4:5870333-5870352 Msa0973380:intron 25.0%
! TTTAATCTGAATGTCATGTT+TGG - chr6_4:5870444-5870463 Msa0973380:intron 25.0%
! TTAATCTGAATGTCATGTTT+GGG - chr6_4:5870445-5870464 Msa0973380:intron 25.0%
!! TTGTTGCTTCTACAAATTTA+TGG + chr6_4:5870678-5870697 None:intergenic 25.0%
!! TTAAGTTGTTTATCCAAACA+TGG + chr6_4:5870992-5871011 None:intergenic 25.0%
!!! GATTTTGTTTTATAATGCCA+AGG - chr6_4:5871267-5871286 Msa0973380:intron 25.0%
! CATAATTAAACTCATATGTG+TGG + chr6_4:5871509-5871528 None:intergenic 25.0%
!!! AAATGTTTTTAAATTTGGGC+TGG + chr6_4:5871929-5871948 None:intergenic 25.0%
! TGAATTATTAGAAAAGGTTC+CGG - chr6_4:5872194-5872213 Msa0973380:intron 25.0%
! GAAATGCAATAAATATTCCA+AGG - chr6_4:5872269-5872288 Msa0973380:intron 25.0%
! AATGTTTGTGGATACATTAT+AGG + chr6_4:5872340-5872359 None:intergenic 25.0%
! AGATGTCAAAAAAATGTTTG+TGG + chr6_4:5872352-5872371 None:intergenic 25.0%
!! TATCAGTTTTCTAATGTATC+TGG - chr6_4:5872520-5872539 Msa0973380:intron 25.0%
!!! TATTGGTCTAAATAGTGTTT+TGG - chr6_4:5872758-5872777 Msa0973380:intron 25.0%
!!! AATCTCGTGATTTTTTATCT+AGG - chr6_4:5872799-5872818 Msa0973380:intron 25.0%
!!! TTCACTTCAATTGTGTTTTT+TGG + chr6_4:5873674-5873693 None:intergenic 25.0%
! AAAATGTTACATGAGTTAGT+AGG - chr6_4:5873722-5873741 Msa0973380:CDS 25.0%
!!! GTAAGGTGTTTTTTTGGTTT+TGG + chr6_4:5868612-5868631 None:intergenic 30.0%
!!! GTGAAAGTAAGGTGTTTTTT+TGG + chr6_4:5868618-5868637 None:intergenic 30.0%
TGTTAGTTGTTGTGAAAGTA+AGG + chr6_4:5868629-5868648 None:intergenic 30.0%
!!! TGAAGAAAGATGATTGGTTT+TGG + chr6_4:5868698-5868717 None:intergenic 30.0%
!! ATGCTTTTAATCAGAAGTGT+CGG + chr6_4:5868824-5868843 None:intergenic 30.0%
!!! TTCATCATTGCTGATTTTGA+AGG - chr6_4:5868964-5868983 Msa0973380:intron 30.0%
! GTTGAATATTTTGCAGAATC+AGG - chr6_4:5869044-5869063 Msa0973380:intron 30.0%
! TATTTTGCAGAATCAGGAAA+TGG - chr6_4:5869050-5869069 Msa0973380:intron 30.0%
! ATTTTGCAGAATCAGGAAAT+GGG - chr6_4:5869051-5869070 Msa0973380:intron 30.0%
GTCATAAAATCACACATGAT+TGG - chr6_4:5869427-5869446 Msa0973380:CDS 30.0%
! TTTTTCTTCTTCTTTTGACG+TGG - chr6_4:5869486-5869505 Msa0973380:intron 30.0%
! CTAAGCTACTCTAAAAAGTA+AGG + chr6_4:5869770-5869789 None:intergenic 30.0%
TAGTCATTGAATCACCAAAA+CGG - chr6_4:5869787-5869806 Msa0973380:CDS 30.0%
TCTATCCGCAAATATCATTT+AGG - chr6_4:5869923-5869942 Msa0973380:intron 30.0%
TCCATCCTAAATGATATTTG+CGG + chr6_4:5869931-5869950 None:intergenic 30.0%
! TCTAAGATGAGAGACATATT+TGG - chr6_4:5869992-5870011 Msa0973380:intron 30.0%
CTAAGATGAGAGACATATTT+GGG - chr6_4:5869993-5870012 Msa0973380:intron 30.0%
TAAGATGAGAGACATATTTG+GGG - chr6_4:5869994-5870013 Msa0973380:intron 30.0%
! GATTAAAAAGCATACACTGT+CGG - chr6_4:5870102-5870121 Msa0973380:intron 30.0%
! CGGTGTAAATCAATTTTACA+TGG - chr6_4:5870122-5870141 Msa0973380:intron 30.0%
! TCAAAACGGTTGATTCTTAT+TGG - chr6_4:5870222-5870241 Msa0973380:intron 30.0%
!! GTGAAGTTGTTTTACATTGA+CGG - chr6_4:5870253-5870272 Msa0973380:intron 30.0%
! GATATTTTACGGGTTTAAAG+GGG + chr6_4:5870284-5870303 None:intergenic 30.0%
! GGATATTTTACGGGTTTAAA+GGG + chr6_4:5870285-5870304 None:intergenic 30.0%
! TGGATATTTTACGGGTTTAA+AGG + chr6_4:5870286-5870305 None:intergenic 30.0%
TGATAATAAGCTCAAAGGAT+TGG + chr6_4:5870384-5870403 None:intergenic 30.0%
!! TACGTTGATAATAAGCTCAA+AGG + chr6_4:5870389-5870408 None:intergenic 30.0%
! TCGAAGCATTATAACCTATA+AGG - chr6_4:5870579-5870598 Msa0973380:intron 30.0%
! CGAAGCATTATAACCTATAA+GGG - chr6_4:5870580-5870599 Msa0973380:intron 30.0%
TTAAGATGGTATACCCTTAT+AGG + chr6_4:5870596-5870615 None:intergenic 30.0%
TGCTTCTACAAATTTATGGT+GGG + chr6_4:5870674-5870693 None:intergenic 30.0%
TTGCTTCTACAAATTTATGG+TGG + chr6_4:5870675-5870694 None:intergenic 30.0%
AAAGCCAGTATGTATGTATT+TGG + chr6_4:5870757-5870776 None:intergenic 30.0%
TTTATTTCCAACGACTACAT+AGG - chr6_4:5870825-5870844 Msa0973380:intron 30.0%
TGGTACCTGTAATATATCAA+AGG + chr6_4:5870938-5870957 None:intergenic 30.0%
TAAGAGATAACACTTGCAAT+TGG + chr6_4:5870958-5870977 None:intergenic 30.0%
TATATTACGTAGACCATGTT+TGG - chr6_4:5870976-5870995 Msa0973380:intron 30.0%
CATAAACGCTTCTCATATAA+GGG - chr6_4:5871026-5871045 Msa0973380:intron 30.0%
AAAAAGCTGAAAACAGCTTA+TGG - chr6_4:5871070-5871089 Msa0973380:CDS 30.0%
!!! TTTGTTTTATAATGCCAAGG+CGG - chr6_4:5871270-5871289 Msa0973380:intron 30.0%
CATTGAAAACATCAATACCT+CGG + chr6_4:5871392-5871411 None:intergenic 30.0%
!! GTATTGATGTTTTCAATGAG+CGG - chr6_4:5871394-5871413 Msa0973380:intron 30.0%
!! ATTCATAAAAGTGCTTCTTC+CGG + chr6_4:5872216-5872235 None:intergenic 30.0%
GCTATTAAGAATTTCGTTCA+AGG - chr6_4:5872247-5872266 Msa0973380:intron 30.0%
AACTGTATCAAATATGGTGT+TGG + chr6_4:5872386-5872405 None:intergenic 30.0%
! ATCCTTTTCTTTTGACGATA+CGG + chr6_4:5872546-5872565 None:intergenic 30.0%
GGATGGTAAGAAAATTATGA+AGG - chr6_4:5872562-5872581 Msa0973380:intron 30.0%
AATTTGAATTGTTCACATGC+AGG - chr6_4:5872601-5872620 Msa0973380:intron 30.0%
! GCAAAACATGCAAAATTTTG+TGG - chr6_4:5872917-5872936 Msa0973380:intron 30.0%
CAGATATTACTTGACATATG+TGG + chr6_4:5872955-5872974 None:intergenic 30.0%
TCCAAAAATATAACCCTAAG+CGG + chr6_4:5873147-5873166 None:intergenic 30.0%
AAACGGTTCAAAAAGACTAA+AGG + chr6_4:5873170-5873189 None:intergenic 30.0%
!! TTAGTCTTTTTGAACCGTTT+AGG - chr6_4:5873170-5873189 Msa0973380:intron 30.0%
! TAGTCTTTTTGAACCGTTTA+GGG - chr6_4:5873171-5873190 Msa0973380:intron 30.0%
!! AACTCTGATAAATTTGCTGT+TGG - chr6_4:5873692-5873711 Msa0973380:CDS 30.0%
TGTGTCCTATGTTTAAAAAC+CGG - chr6_4:5873841-5873860 Msa0973380:five_prime_UTR 30.0%
AGTTGTGTTCTGTTGAGTTA+AGG + chr6_4:5868528-5868547 None:intergenic 35.0%
AGAAGGTGAAGAAAGATGAT+TGG + chr6_4:5868704-5868723 None:intergenic 35.0%
CTTACTTGAAGAAGAGAAGA+GGG + chr6_4:5868776-5868795 None:intergenic 35.0%
ACTTACTTGAAGAAGAGAAG+AGG + chr6_4:5868777-5868796 None:intergenic 35.0%
AAAATCTTGCTTGAACGGTA+TGG - chr6_4:5869092-5869111 Msa0973380:intron 35.0%
! CTTTTCTCAATCTTCTCCAA+AGG - chr6_4:5869139-5869158 Msa0973380:intron 35.0%
TTGAAAAAGTTGAGATGCAG+TGG - chr6_4:5869339-5869358 Msa0973380:intron 35.0%
TATTTAGTCCAAGAGGAAGA+AGG - chr6_4:5869515-5869534 Msa0973380:intron 35.0%
TACGACACATAAATTGCTTC+AGG - chr6_4:5869602-5869621 Msa0973380:CDS 35.0%
!! GGTAATCTCATTTTAACACC+TGG - chr6_4:5869623-5869642 Msa0973380:intron 35.0%
!! GATCGAATGTTCTAAAGTGT+CGG - chr6_4:5869866-5869885 Msa0973380:intron 35.0%
TCCGCAAATATCATTTAGGA+TGG - chr6_4:5869927-5869946 Msa0973380:intron 35.0%
! GTTTGGGTAGTTAGCTTATA+TGG - chr6_4:5870461-5870480 Msa0973380:intron 35.0%
TTATAATGCTTCGATGCAAC+GGG + chr6_4:5870573-5870592 None:intergenic 35.0%
GTTATAATGCTTCGATGCAA+CGG + chr6_4:5870574-5870593 None:intergenic 35.0%
TTAGCATATGTTTGAATGCG+TGG - chr6_4:5870617-5870636 Msa0973380:intron 35.0%
! AATTTATGGTGGGATAGCAT+CGG + chr6_4:5870664-5870683 None:intergenic 35.0%
AGTCGTTGGAAATAAATGTC+AGG + chr6_4:5870821-5870840 None:intergenic 35.0%
TGCAGCCTTTGATATATTAC+AGG - chr6_4:5870930-5870949 Msa0973380:intron 35.0%
GCATAAACGCTTCTCATATA+AGG - chr6_4:5871025-5871044 Msa0973380:intron 35.0%
TCTCATATAAGGGCTTATCA+TGG - chr6_4:5871036-5871055 Msa0973380:intron 35.0%
ACAAGCAAACAAGTGTACTA+AGG + chr6_4:5871178-5871197 None:intergenic 35.0%
TTAGACTTGTATAGTGGTAC+CGG - chr6_4:5871331-5871350 Msa0973380:intron 35.0%
!! CGTGACTTTAGAATCAGTTA+CGG + chr6_4:5871467-5871486 None:intergenic 35.0%
! TTAGGTGCATTTTGTTGAGA+TGG - chr6_4:5871667-5871686 Msa0973380:intron 35.0%
! ATTTTGTTGAGATGGATCCA+TGG - chr6_4:5871675-5871694 Msa0973380:intron 35.0%
! TTTTGTTGAGATGGATCCAT+GGG - chr6_4:5871676-5871695 Msa0973380:intron 35.0%
AAAACATCTGATACAACCCA+TGG + chr6_4:5871695-5871714 None:intergenic 35.0%
GACTGAATCATCAATGAATC+CGG + chr6_4:5871738-5871757 None:intergenic 35.0%
!! TTAAATTTGGGCTGGTAAAG+AGG + chr6_4:5871921-5871940 None:intergenic 35.0%
!! ATAGTGGTTTGTTCGAATTG+CGG - chr6_4:5871989-5872008 Msa0973380:intron 35.0%
! TCAAATATGGTGTTGGATGA+TGG + chr6_4:5872379-5872398 None:intergenic 35.0%
!!! GTAAGTGTCAGTTTTATTCG+AGG + chr6_4:5872442-5872461 None:intergenic 35.0%
GTATCGTCAAAAGAAAAGGA+TGG - chr6_4:5872545-5872564 Msa0973380:intron 35.0%
! AAAGTGTCTTCTCCAAGAAA+GGG + chr6_4:5872715-5872734 None:intergenic 35.0%
!! AAAAGTGTCTTCTCCAAGAA+AGG + chr6_4:5872716-5872735 None:intergenic 35.0%
TGCTTGGATTTACCTTAACA+AGG + chr6_4:5872871-5872890 None:intergenic 35.0%
! ACACAGTACTATTGATTGCT+TGG + chr6_4:5872887-5872906 None:intergenic 35.0%
ATATCTGTAGTCAATAGCAG+TGG - chr6_4:5872968-5872987 Msa0973380:intron 35.0%
!!! TCCATTGATTTTATCCGCTT+AGG - chr6_4:5873130-5873149 Msa0973380:intron 35.0%
!!! CCATTGATTTTATCCGCTTA+GGG - chr6_4:5873131-5873150 Msa0973380:intron 35.0%
! TCCGCTTAGGGTTATATTTT+TGG - chr6_4:5873143-5873162 Msa0973380:intron 35.0%
TGGAAGTCAAAAACCCTAAA+CGG + chr6_4:5873187-5873206 None:intergenic 35.0%
CAGATGAGAAAAAGTAACGT+CGG + chr6_4:5873307-5873326 None:intergenic 35.0%
AGCGAGATTCAGAAGAAATT+AGG + chr6_4:5873342-5873361 None:intergenic 35.0%
! TTAGTTTGATGATATGTCCC+AGG - chr6_4:5873534-5873553 Msa0973380:intron 35.0%
CACTTACAGAATTCAAACCT+GGG + chr6_4:5873554-5873573 None:intergenic 35.0%
ACACTTACAGAATTCAAACC+TGG + chr6_4:5873555-5873574 None:intergenic 35.0%
! TCAGTCCGGTTTTTAAACAT+AGG + chr6_4:5873849-5873868 None:intergenic 35.0%
ATCTGAGTTATATTGCAGCT+TGG - chr6_4:5873914-5873933 Msa0973380:five_prime_UTR 35.0%
CTAGTCAATGGTTTCAATAC+AGG + chr6_4:5873944-5873963 None:intergenic 35.0%
GCATAGAATCAACTAGTCAA+TGG + chr6_4:5873956-5873975 None:intergenic 35.0%
CACTACAGCAAGGGAAAAAA+AGG + chr6_4:5868483-5868502 None:intergenic 40.0%
ACACAACTGCTTTCTCACTA+CGG - chr6_4:5868540-5868559 Msa0973380:three_prime_UTR 40.0%
!!! GTTTTGGTGTTGAGAAGAAG+TGG + chr6_4:5868682-5868701 None:intergenic 40.0%
AGAAGAGGAAGAAGAGAAGA+AGG + chr6_4:5868721-5868740 None:intergenic 40.0%
TTGGAGGTAAAGGTAAGAAG+AGG + chr6_4:5868736-5868755 None:intergenic 40.0%
TACAACTAACAAGTCGACAC+CGG + chr6_4:5868926-5868945 None:intergenic 40.0%
GTGCAACTATTTAGTCCAAG+AGG - chr6_4:5869508-5869527 Msa0973380:intron 40.0%
AAGGAGAAGCAAAAGACAAG+AGG - chr6_4:5869534-5869553 Msa0973380:intron 40.0%
AGAAGCAAAAGACAAGAGGA+GGG - chr6_4:5869538-5869557 Msa0973380:intron 40.0%
AATTTATGTGTCGTACGAGG+AGG + chr6_4:5869597-5869616 None:intergenic 40.0%
AGCAATTTATGTGTCGTACG+AGG + chr6_4:5869600-5869619 None:intergenic 40.0%
TGGATAGATTGCTGTGAAGT+TGG - chr6_4:5869696-5869715 Msa0973380:intron 40.0%
! AAAAAGTAAGGCGCTTCACT+CGG + chr6_4:5869758-5869777 None:intergenic 40.0%
! TCAGTGTATTGTGTCCGTTT+TGG + chr6_4:5869804-5869823 None:intergenic 40.0%
AACGTAACTAAGCTCAGTGT+AGG + chr6_4:5869900-5869919 None:intergenic 40.0%
ATGGAGCAGGGAAAATATGA+AGG + chr6_4:5870067-5870086 None:intergenic 40.0%
! ACTGAGTTGACGTGTCAAAA+CGG - chr6_4:5870208-5870227 Msa0973380:intron 40.0%
AGGGCCAAATACATACATAC+TGG - chr6_4:5870750-5870769 Msa0973380:CDS 40.0%
CCAATAACCTATGTAGTCGT+TGG + chr6_4:5870835-5870854 None:intergenic 40.0%
CCAACGACTACATAGGTTAT+TGG - chr6_4:5870832-5870851 Msa0973380:intron 40.0%
ACGACTACATAGGTTATTGG+AGG - chr6_4:5870835-5870854 Msa0973380:intron 40.0%
GGCTTATCATGGAGAGTTTA+TGG - chr6_4:5871047-5871066 Msa0973380:intron 40.0%
AGCTGGTTAGACTTGTATAG+TGG - chr6_4:5871325-5871344 Msa0973380:intron 40.0%
TGCTTCAATTCCAACAGAAC+CGG + chr6_4:5871353-5871372 None:intergenic 40.0%
! TGTTTTGCGTCCAAACTTAG+AGG - chr6_4:5871709-5871728 Msa0973380:intron 40.0%
GTTCGAAGAATTTCTCAACG+CGG + chr6_4:5871772-5871791 None:intergenic 40.0%
ACCCTTACTACTGGAACAAA+AGG - chr6_4:5871867-5871886 Msa0973380:intron 40.0%
! CCCTTTTGTTCCAGTAGTAA+GGG + chr6_4:5871871-5871890 None:intergenic 40.0%
CCCTTACTACTGGAACAAAA+GGG - chr6_4:5871868-5871887 Msa0973380:intron 40.0%
! ACCCTTTTGTTCCAGTAGTA+AGG + chr6_4:5871872-5871891 None:intergenic 40.0%
GTGTTGTAATCGCGATATCA+TGG - chr6_4:5871963-5871982 Msa0973380:intron 40.0%
CGCGATATCATGGAAAATAG+TGG - chr6_4:5871973-5871992 Msa0973380:intron 40.0%
!! TAGTGGTTTGTTCGAATTGC+GGG - chr6_4:5871990-5872009 Msa0973380:intron 40.0%
TTATAGGCTATAGCGTAGCA+GGG + chr6_4:5872104-5872123 None:intergenic 40.0%
CAGTGCTATAACGCTGTTAT+AGG + chr6_4:5872120-5872139 None:intergenic 40.0%
ATAACAGCGTTATAGCACTG+TGG - chr6_4:5872120-5872139 Msa0973380:intron 40.0%
CAAGCAGTGTTGTCAAATAG+AGG + chr6_4:5872153-5872172 None:intergenic 40.0%
ATATGCCGAAGTTGACTATG+CGG - chr6_4:5872663-5872682 Msa0973380:intron 40.0%
ATTGCAGAATCACCCTTTCT+TGG - chr6_4:5872700-5872719 Msa0973380:intron 40.0%
CCCTAAGCGGATAAAATCAA+TGG + chr6_4:5873134-5873153 None:intergenic 40.0%
AACTCCTACGTCAAAGTCTA+GGG + chr6_4:5873375-5873394 None:intergenic 40.0%
AAACTCCTACGTCAAAGTCT+AGG + chr6_4:5873376-5873395 None:intergenic 40.0%
TTGAACTACAGATAACCGAC+AGG - chr6_4:5873580-5873599 Msa0973380:intron 40.0%
!! CATAAATTGCCAAGAGTGTC+CGG + chr6_4:5873614-5873633 None:intergenic 40.0%
TGGCAATTTATGGACCAACA+TGG - chr6_4:5873622-5873641 Msa0973380:intron 40.0%
GGCAATTTATGGACCAACAT+GGG - chr6_4:5873623-5873642 Msa0973380:intron 40.0%
CAAATGCTGCACTACAGCAA+GGG + chr6_4:5868492-5868511 None:intergenic 45.0%
AGAAGAAGTGGTGAGTGTGT+TGG + chr6_4:5868670-5868689 None:intergenic 45.0%
AGAAGAGGGTTTGGAGGTAA+AGG + chr6_4:5868746-5868765 None:intergenic 45.0%
AAGAGGGTGAGTGAAGAAGA+GGG + chr6_4:5868760-5868779 None:intergenic 45.0%
TGCAGAATCAGGAAATGGGT+TGG - chr6_4:5869055-5869074 Msa0973380:intron 45.0%
TTGCTTCTCCTTCTTCCTCT+TGG + chr6_4:5869526-5869545 None:intergenic 45.0%
GAGAAGCAAAAGACAAGAGG+AGG - chr6_4:5869537-5869556 Msa0973380:intron 45.0%
! AAAAGTAAGGCGCTTCACTC+GGG + chr6_4:5869757-5869776 None:intergenic 45.0%
CTAAGCTCAGTGTAGGAACT+AGG + chr6_4:5869893-5869912 None:intergenic 45.0%
TCGATGCAACGGGTGTTAAA+AGG + chr6_4:5870563-5870582 None:intergenic 45.0%
ACCAAGCTTCCATGTCAACA+TGG - chr6_4:5870699-5870718 Msa0973380:CDS 45.0%
ACCATGTTGACATGGAAGCT+TGG + chr6_4:5870703-5870722 None:intergenic 45.0%
CGGTCAAAACCATGTTGACA+TGG + chr6_4:5870711-5870730 None:intergenic 45.0%
TGCAGCGCGTACATAAATCA+CGG + chr6_4:5870731-5870750 None:intergenic 45.0%
TGATTTATGTACGCGCTGCA+GGG - chr6_4:5870731-5870750 Msa0973380:CDS 45.0%
GCTACTCTCACCAAATAGCA+TGG - chr6_4:5870876-5870895 Msa0973380:intron 45.0%
! TTTTATAATGCCAAGGCGGC+TGG - chr6_4:5871274-5871293 Msa0973380:intron 45.0%
TACAAGTCTAACCAGCTTCC+AGG + chr6_4:5871322-5871341 None:intergenic 45.0%
!! TATAGTGGTACCGGTTCTGT+TGG - chr6_4:5871340-5871359 Msa0973380:intron 45.0%
AATCCGGTCACCTCTAAGTT+TGG + chr6_4:5871722-5871741 None:intergenic 45.0%
GAACGTGCTGAGCAATTTGT+AGG - chr6_4:5871788-5871807 Msa0973380:intron 45.0%
TGTTCCAGTAGTAAGGGTTC+TGG + chr6_4:5871865-5871884 None:intergenic 45.0%
CTACTGGAACAAAAGGGTTG+TGG - chr6_4:5871874-5871893 Msa0973380:intron 45.0%
GTTATAGGCTATAGCGTAGC+AGG + chr6_4:5872105-5872124 None:intergenic 45.0%
TGCATATTTGCAAGAGACGC+AGG + chr6_4:5872300-5872319 None:intergenic 45.0%
GGCCGTATCGTCAAAAGAAA+AGG - chr6_4:5872541-5872560 Msa0973380:intron 45.0%
TGTTCACATGCAGGAAACAG+TGG - chr6_4:5872610-5872629 Msa0973380:intron 45.0%
TAGTCAACTTCGGCATATGG+AGG + chr6_4:5872661-5872680 None:intergenic 45.0%
GCATAGTCAACTTCGGCATA+TGG + chr6_4:5872664-5872683 None:intergenic 45.0%
CAACACCGCATAGTCAACTT+CGG + chr6_4:5872671-5872690 None:intergenic 45.0%
!! TTGACTATGCGGTGTTGATG+AGG - chr6_4:5872674-5872693 Msa0973380:intron 45.0%
TCTGTAGTCAATAGCAGTGG+TGG - chr6_4:5872971-5872990 Msa0973380:intron 45.0%
CTCATGGTGGCAAAATCTCA+GGG - chr6_4:5873087-5873106 Msa0973380:intron 45.0%
TCATGGTGGCAAAATCTCAG+GGG - chr6_4:5873088-5873107 Msa0973380:intron 45.0%
GTGGAAACAGAACTAAGGAG+AGG + chr6_4:5873213-5873232 None:intergenic 45.0%
AGGTCGTGGAAACAGAACTA+AGG + chr6_4:5873218-5873237 None:intergenic 45.0%
CACGAAACAGAACTAAGGAG+AGG + chr6_4:5873238-5873257 None:intergenic 45.0%
GAGGTCACGAAACAGAACTA+AGG + chr6_4:5873243-5873262 None:intergenic 45.0%
!! TTGGTGCTATAGAGGTGTAG+CGG + chr6_4:5873403-5873422 None:intergenic 45.0%
ACACCTCTATAGCACCAACA+TGG - chr6_4:5873405-5873424 Msa0973380:intron 45.0%
AACTACAGATAACCGACAGG+CGG - chr6_4:5873583-5873602 Msa0973380:intron 45.0%
CGGACACTCTTGGCAATTTA+TGG - chr6_4:5873612-5873631 Msa0973380:intron 45.0%
! CTCTTCTTTTGAGCCCATGT+TGG + chr6_4:5873639-5873658 None:intergenic 45.0%
AAAAACCGGACTGAGTCAGT+CGG - chr6_4:5873855-5873874 Msa0973380:five_prime_UTR 45.0%
! CAAACTGGCAAGTTTCGAGT+TGG + chr6_4:5873882-5873901 None:intergenic 45.0%
!! AAACTTGCCAGTTTGCTGGT+TGG - chr6_4:5873887-5873906 Msa0973380:five_prime_UTR 45.0%
GATCAAACCAACCAGCAAAC+TGG + chr6_4:5873897-5873916 None:intergenic 45.0%
GCAAGGGAAAAAAAGGACCC+AGG + chr6_4:5868476-5868495 None:intergenic 50.0%
CCAAATGCTGCACTACAGCA+AGG + chr6_4:5868493-5868512 None:intergenic 50.0%
! CCTTGCTGTAGTGCAGCATT+TGG - chr6_4:5868490-5868509 Msa0973380:three_prime_UTR 50.0%
TGCTGTAGTGCAGCATTTGG+CGG - chr6_4:5868493-5868512 Msa0973380:three_prime_UTR 50.0%
AAGTGGTGAGTGTGTTGGAG+GGG + chr6_4:5868665-5868684 None:intergenic 50.0%
GAAGTGGTGAGTGTGTTGGA+GGG + chr6_4:5868666-5868685 None:intergenic 50.0%
AGAAGTGGTGAGTGTGTTGG+AGG + chr6_4:5868667-5868686 None:intergenic 50.0%
GAGTGAAGAAGAGGGTTTGG+AGG + chr6_4:5868752-5868771 None:intergenic 50.0%
GGTGAGTGAAGAAGAGGGTT+TGG + chr6_4:5868755-5868774 None:intergenic 50.0%
GAAGAGGGTGAGTGAAGAAG+AGG + chr6_4:5868761-5868780 None:intergenic 50.0%
AAGAGGAGGGAAACAAGTGC+AGG - chr6_4:5869551-5869570 Msa0973380:intron 50.0%
CCTCGTAAATTAGCACTGCC+AGG + chr6_4:5869644-5869663 None:intergenic 50.0%
CCTGGCAGTGCTAATTTACG+AGG - chr6_4:5869641-5869660 Msa0973380:intron 50.0%
TGCGCGTGTGTATGCGTTAA+TGG - chr6_4:5869676-5869695 Msa0973380:intron 50.0%
CGGACACAATACACTGACAC+TGG - chr6_4:5869807-5869826 Msa0973380:intron 50.0%
GTGATTTATGTACGCGCTGC+AGG - chr6_4:5870730-5870749 Msa0973380:CDS 50.0%
GGGCGTACATCCATGCTATT+TGG + chr6_4:5870889-5870908 None:intergenic 50.0%
CTTTCACGACCTCCATCATG+GGG + chr6_4:5870909-5870928 None:intergenic 50.0%
CCTTTCACGACCTCCATCAT+GGG + chr6_4:5870910-5870929 None:intergenic 50.0%
ACCTTTCACGACCTCCATCA+TGG + chr6_4:5870911-5870930 None:intergenic 50.0%
AGACTGCTTAGGAGAGCTTG+TGG + chr6_4:5871114-5871133 None:intergenic 50.0%
CTCTCCTAAGCAGTCTCACA+AGG - chr6_4:5871118-5871137 Msa0973380:CDS 50.0%
GAGTCCTTGTGAGACTGCTT+AGG + chr6_4:5871125-5871144 None:intergenic 50.0%
TAACCAGCTTCCAGGTCTCA+AGG + chr6_4:5871314-5871333 None:intergenic 50.0%
! GGAATTGAAGCACTTAGCCG+AGG - chr6_4:5871361-5871380 Msa0973380:intron 50.0%
! TCAATACCTCGGAGCATCCT+CGG + chr6_4:5871381-5871400 None:intergenic 50.0%
CGTCCAAACTTAGAGGTGAC+CGG - chr6_4:5871716-5871735 Msa0973380:intron 50.0%
CAGTCCAGAACCCTTACTAC+TGG - chr6_4:5871858-5871877 Msa0973380:intron 50.0%
!! CTATAGAAGCACCACAGCAC+TGG + chr6_4:5872019-5872038 None:intergenic 50.0%
ACAGCGTTATAGCACTGTGG+CGG - chr6_4:5872123-5872142 Msa0973380:intron 50.0%
TCCTTCGAAAACCGACATGC+TGG - chr6_4:5872832-5872851 Msa0973380:CDS 50.0%
!!! TCCAGCATGTCGGTTTTCGA+AGG + chr6_4:5872836-5872855 None:intergenic 50.0%
ACCGACATGCTGGAATCTTG+CGG - chr6_4:5872842-5872861 Msa0973380:CDS 50.0%
TCCGCAAGATTCCAGCATGT+CGG + chr6_4:5872846-5872865 None:intergenic 50.0%
! ATCTTGCGGACGCCTTGTTA+AGG - chr6_4:5872856-5872875 Msa0973380:CDS 50.0%
AGTGGTGGTTGCTCCAATTG+CGG - chr6_4:5872986-5873005 Msa0973380:intron 50.0%
AACACAGATCTGCTCTGCCA+CGG + chr6_4:5873052-5873071 None:intergenic 50.0%
AGATCTGTGTTGCGGTCGTA+GGG - chr6_4:5873061-5873080 Msa0973380:intron 50.0%
GCTCATGGTGGCAAAATCTC+AGG - chr6_4:5873086-5873105 Msa0973380:intron 50.0%
ACAGAACTAAGGAGAGGTCG+TGG + chr6_4:5873207-5873226 None:intergenic 50.0%
ACAGAACTAAGGAGAGGTCG+TGG + chr6_4:5873207-5873226 None:intergenic 50.0%
GCAAAGTCACAGTCTAGCAG+TGG + chr6_4:5873272-5873291 None:intergenic 50.0%
CTCTCCCTAGACTTTGACGT+AGG - chr6_4:5873368-5873387 Msa0973380:intron 50.0%
!! CGACCATGTTGGTGCTATAG+AGG + chr6_4:5873411-5873430 None:intergenic 50.0%
AGTGTAGCTGACGACCATGT+TGG + chr6_4:5873422-5873441 None:intergenic 50.0%
CTCGAAACTTGCCAGTTTGC+TGG - chr6_4:5873883-5873902 Msa0973380:five_prime_UTR 50.0%
TGTCGCACACTGACAGGTGT+GGG + chr6_4:5868856-5868875 None:intergenic 55.0%
TGTTCGTGTCGCACACTGAC+AGG + chr6_4:5868862-5868881 None:intergenic 55.0%
ACAAGTGCAGGATCCACCTG+AGG - chr6_4:5869563-5869582 Msa0973380:intron 55.0%
TGTGTCGTACGAGGAGGCTT+AGG + chr6_4:5869591-5869610 None:intergenic 55.0%
CATGGATGTACGCCCCATGA+TGG - chr6_4:5870894-5870913 Msa0973380:intron 55.0%
! CCCATGATGGAGGTCGTGAA+AGG - chr6_4:5870907-5870926 Msa0973380:intron 55.0%
TATAATGCCAAGGCGGCTGG+TGG - chr6_4:5871277-5871296 Msa0973380:intron 55.0%
AGTCCTGCATCCTTGAGACC+TGG - chr6_4:5871301-5871320 Msa0973380:intron 55.0%
CTTCCAGGTCTCAAGGATGC+AGG + chr6_4:5871307-5871326 None:intergenic 55.0%
CATCCTTGAGACCTGGAAGC+TGG - chr6_4:5871308-5871327 Msa0973380:intron 55.0%
AAGAGACGCAGGCAGAACCT+TGG + chr6_4:5872289-5872308 None:intergenic 55.0%
GGCAGAGCAGATCTGTGTTG+CGG - chr6_4:5873053-5873072 Msa0973380:intron 55.0%
CAGATCTGTGTTGCGGTCGT+AGG - chr6_4:5873060-5873079 Msa0973380:intron 55.0%
AGTCTAGCAGTGGAGAGCAG+AGG + chr6_4:5873262-5873281 None:intergenic 55.0%
CAGATAACCGACAGGCGGTT+TGG - chr6_4:5873588-5873607 Msa0973380:intron 55.0%
! TTGGACCGACTGACTCAGTC+CGG + chr6_4:5873863-5873882 None:intergenic 55.0%
CACTGACAGGTGTGGGACAC+TGG + chr6_4:5868849-5868868 None:intergenic 60.0%
GTGTCGCACACTGACAGGTG+TGG + chr6_4:5868857-5868876 None:intergenic 60.0%
GGAGGCTTAGGTTCCTCAGG+TGG + chr6_4:5869579-5869598 None:intergenic 60.0%
CGAGGAGGCTTAGGTTCCTC+AGG + chr6_4:5869582-5869601 None:intergenic 60.0%
GGATGTACGCCCCATGATGG+AGG - chr6_4:5870897-5870916 Msa0973380:intron 60.0%
ACTTAGCCGAGGATGCTCCG+AGG - chr6_4:5871372-5871391 Msa0973380:intron 60.0%
ATTGCGGGATGCCAGTGCTG+TGG - chr6_4:5872005-5872024 Msa0973380:intron 60.0%
TTGCCACGCACAGCCGCAAT+TGG + chr6_4:5873002-5873021 None:intergenic 60.0%
TGCGGCTGTGCGTGGCAAAA+CGG - chr6_4:5873004-5873023 Msa0973380:intron 60.0%
AGACGCTACACATAGCGCCG+TGG - chr6_4:5873032-5873051 Msa0973380:intron 60.0%
! TAACCGACAGGCGGTTTGGC+CGG - chr6_4:5873592-5873611 Msa0973380:intron 60.0%
GCTCCAATTGCGGCTGTGCG+TGG - chr6_4:5872996-5873015 Msa0973380:intron 65.0%
GGCTGTGCGTGGCAAAACGG+AGG - chr6_4:5873007-5873026 Msa0973380:intron 65.0%
TGCGGTCGTAGGGCTGCTCA+TGG - chr6_4:5873071-5873090 Msa0973380:intron 65.0%
GGTCGTAGGGCTGCTCATGG+TGG - chr6_4:5873074-5873093 Msa0973380:intron 65.0%
TGTCCGGCCAAACCGCCTGT+CGG + chr6_4:5873598-5873617 None:intergenic 65.0%
! GCGGTTTGGCCGGACACTCT+TGG - chr6_4:5873602-5873621 Msa0973380:intron 65.0%
AGGACTGCCACCAGCCGCCT+TGG + chr6_4:5871287-5871306 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 5868462 5873980 5868462 ID=Msa0973380;Name=Msa0973380
chr6_4 mRNA 5868462 5873980 5868462 ID=Msa0973380-mRNA-1;Parent=Msa0973380;Name=Msa0973380-mRNA-1;_AED=0.10;_eAED=0.10;_QI=187|0.77|0.9|0.9|1|1|10|288|339
chr6_4 exon 5868462 5868851 5868462 ID=Msa0973380-mRNA-1:exon:2462;Parent=Msa0973380-mRNA-1
chr6_4 exon 5869414 5869464 5869414 ID=Msa0973380-mRNA-1:exon:2461;Parent=Msa0973380-mRNA-1
chr6_4 exon 5869565 5869621 5869565 ID=Msa0973380-mRNA-1:exon:2460;Parent=Msa0973380-mRNA-1
chr6_4 exon 5869704 5869819 5869704 ID=Msa0973380-mRNA-1:exon:2459;Parent=Msa0973380-mRNA-1
chr6_4 exon 5870633 5870771 5870633 ID=Msa0973380-mRNA-1:exon:2458;Parent=Msa0973380-mRNA-1
chr6_4 exon 5871049 5871153 5871049 ID=Msa0973380-mRNA-1:exon:2457;Parent=Msa0973380-mRNA-1
chr6_4 exon 5871491 5871595 5871491 ID=Msa0973380-mRNA-1:exon:2456;Parent=Msa0973380-mRNA-1
chr6_4 exon 5872819 5872920 5872819 ID=Msa0973380-mRNA-1:exon:2455;Parent=Msa0973380-mRNA-1
chr6_4 exon 5873282 5873382 5873282 ID=Msa0973380-mRNA-1:exon:2454;Parent=Msa0973380-mRNA-1
chr6_4 exon 5873652 5873980 5873652 ID=Msa0973380-mRNA-1:exon:2453;Parent=Msa0973380-mRNA-1
chr6_4 five_prime_UTR 5873794 5873980 5873794 ID=Msa0973380-mRNA-1:five_prime_utr;Parent=Msa0973380-mRNA-1
chr6_4 CDS 5873652 5873793 5873652 ID=Msa0973380-mRNA-1:cds;Parent=Msa0973380-mRNA-1
chr6_4 CDS 5873282 5873382 5873282 ID=Msa0973380-mRNA-1:cds;Parent=Msa0973380-mRNA-1
chr6_4 CDS 5872819 5872920 5872819 ID=Msa0973380-mRNA-1:cds;Parent=Msa0973380-mRNA-1
chr6_4 CDS 5871491 5871595 5871491 ID=Msa0973380-mRNA-1:cds;Parent=Msa0973380-mRNA-1
chr6_4 CDS 5871049 5871153 5871049 ID=Msa0973380-mRNA-1:cds;Parent=Msa0973380-mRNA-1
chr6_4 CDS 5870633 5870771 5870633 ID=Msa0973380-mRNA-1:cds;Parent=Msa0973380-mRNA-1
chr6_4 CDS 5869704 5869819 5869704 ID=Msa0973380-mRNA-1:cds;Parent=Msa0973380-mRNA-1
chr6_4 CDS 5869565 5869621 5869565 ID=Msa0973380-mRNA-1:cds;Parent=Msa0973380-mRNA-1
chr6_4 CDS 5869414 5869464 5869414 ID=Msa0973380-mRNA-1:cds;Parent=Msa0973380-mRNA-1
chr6_4 CDS 5868750 5868851 5868750 ID=Msa0973380-mRNA-1:cds;Parent=Msa0973380-mRNA-1
chr6_4 three_prime_UTR 5868462 5868749 5868462 ID=Msa0973380-mRNA-1:three_prime_utr;Parent=Msa0973380-mRNA-1
Gene Sequence

>Msa0973380

ATGTCTGTTTTGTCCCCTCCAACACACTCACCACTTCTTCTCAACACCAAAACCAATCATCTTTCTTCACCTTCTTCTCTTCTTCCTCTTCTTACCTTTACCTCCAAACCCTCTTCTTCACTCACCCTCTTCTCTTCTTCAAAATCAGGAAATGGGTTGGCGAGTGAAGAGAAAAAAATCTTGCTTGAACGGTATGGTTATGATGTTGATGCTGATGACTACTTTTCTCAATCTTCTCCAAAGTCCAAGAGGAAGAAGGAGAAGCAAAAGACAAGAGGAGGGAAACAAGTGCAGGATCCACCTGAGGAACCTAAGCCTCCTCGTACGACACATAAATTGCTTCAGGTTATTGGAGGAACAGCTCGAAGAACGAAGCTACTCTCACCAAATAGCATGGATGTACGCCCCATGATGGAGGTCGTGAAAGGTGCAGCCTTTGATATATTACAGGCGGCTGGTGGCAGTCCTGCATCCTTGAGACCTGGAAGCTGGTTAGACTTGTATAGTGGTACCGGTTCTGTTGGAATTGAAGCACTTAGCCGAGGATGCTCCGAGGTGCATTTTGTTGAGATGGATCCATGGGTTGTATCAGATGTTTTGCGTCCAAACTTAGAGGTGACCGGATTCATTGATGATTCAGTCATACACACTGTCCGCGTTGAGAAATTCTTCGAACGTGCTGAGCAATTTGTAGGAAACAGTGGCACATTTGATTACATTAGTGTCACTCCTCCATATGCCGAAGTTGACTATGCGGTGTTGATGAGGCTGATTGCAGAATCACCCTTTCTTGGAGAAGACACTTTTATTGTAGTTGAGTATCCTTCGAAAACCGACATGCTGGAATCTTGCGGACGCCTTGTTAAGTCAATAGCAGTGGTGGTTGCTCCAATTGCGGCTGTGCGTGGCAAAACGGAGATAACCGACAGGCGGTTTGGCCGGACACTCTTGGCAATTTATGGACCAACATGGGCTCAAAAGAAGAGAAAATCAAACATCCAAAAAACACAATTGAAGTGA

Protein sequence

>Msa0973380

MSVLSPPTHSPLLLNTKTNHLSSPSSLLPLLTFTSKPSSSLTLFSSSKSGNGLASEEKKILLERYGYDVDADDYFSQSSPKSKRKKEKQKTRGGKQVQDPPEEPKPPRTTHKLLQVIGGTARRTKLLSPNSMDVRPMMEVVKGAAFDILQAAGGSPASLRPGSWLDLYSGTGSVGIEALSRGCSEVHFVEMDPWVVSDVLRPNLEVTGFIDDSVIHTVRVEKFFERAEQFVGNSGTFDYISVTPPYAEVDYAVLMRLIAESPFLGEDTFIVVEYPSKTDMLESCGRLVKSIAVVVAPIAAVRGKTEITDRRFGRTLLAIYGPTWAQKKRKSNIQKTQLK*