AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0463140


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0463140 MtrunA17_Chr3g0113311 99.281 278 2 0 1 278 1 278 0.0 567
Msa0463140 MtrunA17_Chr4g0006181 70.943 265 73 1 11 275 70 330 1.43e-132 379
Msa0463140 MtrunA17_Chr6g0462031 34.545 220 96 5 60 275 49 224 9.05e-31 115
Msa0463140 MtrunA17_Chr2g0279001 32.800 250 78 7 60 271 60 257 1.23e-29 112
Msa0463140 MtrunA17_Chr8g0345631 31.206 282 107 9 20 270 21 246 4.12e-27 106
Msa0463140 MtrunA17_Chr2g0301081 29.097 299 129 9 1 270 1 245 3.64e-25 100
Msa0463140 MtrunA17_Chr3g0133901 29.435 248 106 5 42 270 46 243 1.62e-23 96.7
Msa0463140 MtrunA17_Chr3g0092091 33.610 241 78 8 52 269 48 229 2.31e-23 95.9
Msa0463140 MtrunA17_Chr6g0476641 33.486 218 91 5 67 274 91 264 5.66e-23 95.5
Msa0463140 MtrunA17_Chr2g0318521 42.177 147 70 5 139 270 92 238 2.28e-22 93.6
Msa0463140 MtrunA17_Chr6g0453151 45.752 153 62 8 139 274 162 310 4.12e-22 94.0
Msa0463140 MtrunA17_Chr6g0453141 46.309 149 59 8 139 270 95 239 5.47e-22 92.4
Msa0463140 MtrunA17_Chr4g0051941 33.992 253 93 11 45 270 35 240 8.30e-22 92.0
Msa0463140 MtrunA17_Chr6g0453181 45.638 149 60 8 139 270 95 239 1.47e-21 91.3
Msa0463140 MtrunA17_Chr6g0453161 44.872 156 65 8 136 274 94 245 3.22e-21 93.2
Msa0463140 MtrunA17_Chr6g0453161 45.098 153 63 8 139 274 362 510 8.03e-21 92.0
Msa0463140 MtrunA17_Chr5g0447531 44.371 151 63 8 137 270 93 239 3.23e-21 90.1
Msa0463140 MtrunA17_Chr5g0448411 29.811 265 115 7 33 269 31 252 2.55e-20 88.2
Msa0463140 MtrunA17_Chr5g0448421 27.946 297 143 7 1 269 1 254 1.39e-19 85.9
Msa0463140 MtrunA17_Chr1g0157481 28.517 263 103 8 44 270 95 308 2.06e-18 83.6
Msa0463140 MtrunA17_Chr6g0464511 48.810 84 32 4 194 270 107 186 1.51e-12 65.5
Msa0463140 MtrunA17_Chr6g0453171 47.368 76 30 3 201 270 1 72 9.22e-11 57.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0463140 AT2G40100.1 70.522 268 78 1 11 278 10 276 4.86e-138 390
Msa0463140 AT3G08940.2 71.260 254 67 1 22 275 23 270 1.65e-128 367
Msa0463140 AT5G01530.1 76.923 221 51 0 55 275 53 273 7.35e-126 360
Msa0463140 AT2G40100.2 62.286 175 66 0 11 185 10 184 3.18e-75 228
Msa0463140 AT3G08940.1 60.479 167 60 1 22 188 23 183 4.49e-66 206
Msa0463140 AT3G54890.1 34.583 240 105 7 40 275 32 223 4.00e-34 124
Msa0463140 AT1G15820.1 34.454 238 70 7 67 271 70 254 6.72e-31 116
Msa0463140 AT3G54890.4 33.333 213 91 6 40 249 32 196 2.48e-27 105
Msa0463140 AT3G47470.1 31.879 298 106 12 1 269 1 230 8.91e-27 105
Msa0463140 AT3G61470.1 32.780 241 84 8 54 270 49 235 7.84e-26 102
Msa0463140 AT4G10340.1 35.616 219 85 7 67 274 82 255 1.57e-24 100
Msa0463140 AT1G45474.2 30.802 237 85 6 60 270 49 232 2.98e-23 95.9
Msa0463140 AT1G45474.1 30.802 237 85 6 60 270 49 232 2.98e-23 95.9
Msa0463140 AT1G29920.1 46.309 149 64 7 137 270 94 241 5.86e-23 95.5
Msa0463140 AT1G29910.1 46.309 149 64 7 137 270 94 241 5.86e-23 95.5
Msa0463140 AT1G29930.1 46.309 149 64 7 137 270 94 241 6.50e-23 95.1
Msa0463140 AT5G54270.1 42.177 147 70 4 139 270 93 239 1.08e-22 94.7
Msa0463140 AT2G34430.1 45.638 149 65 7 137 270 93 240 1.49e-22 94.4
Msa0463140 AT2G34420.1 45.638 149 65 7 137 270 92 239 1.55e-22 94.4
Msa0463140 AT3G27690.1 32.660 297 116 14 1 270 1 240 7.69e-22 92.4
Msa0463140 AT3G27690.2 32.095 296 119 13 2 270 32 272 1.13e-21 92.4
Msa0463140 AT1G19150.1 31.873 251 92 9 45 270 52 248 1.67e-21 91.7
Msa0463140 AT2G05100.1 45.638 149 60 8 139 270 95 239 2.21e-21 91.3
Msa0463140 AT2G05070.1 45.638 149 60 8 139 270 95 239 2.85e-21 90.9
Msa0463140 AT1G61520.3 30.894 246 99 7 52 269 48 250 1.83e-20 89.0
Msa0463140 AT1G61520.1 30.894 246 99 7 52 269 48 250 1.83e-20 89.0
Msa0463140 AT2G05100.2 43.537 147 62 8 139 268 95 237 1.04e-17 82.0
Msa0463140 AT1G76570.1 31.140 228 89 7 67 270 123 306 4.19e-17 80.1
Msa0463140 AT1G61520.2 30.222 225 86 7 73 269 14 195 5.17e-15 72.8

Find 101 sgRNAs with CRISPR-Local

Find 199 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGATGGCTTTGTTTGGATTT+AGG 0.186120 3_3:+62480026 None:intergenic
TGACTCACTTGACCAGAATT+TGG 0.222195 3_3:-62479717 Msa0463140:CDS
GCAATTCAAGCTGCTGTTAC+AGG 0.247549 3_3:-62477283 Msa0463140:CDS
TGAAGTCTTTCTTTCTCTTC+AGG 0.258306 3_3:+62477358 None:intergenic
TCTCAATTAGCACATTGATA+TGG 0.271043 3_3:-62477495 Msa0463140:CDS
AACCTTGCAGGTGATATTAT+TGG 0.288594 3_3:-62479689 Msa0463140:CDS
AAAGCCAGCACCTAAGAAAA+AGG 0.307836 3_3:-62479891 Msa0463140:CDS
CAAGGTTCTTAGCCAAATTC+TGG 0.307978 3_3:+62479705 None:intergenic
GCTTGGTGCTCTTGGTGCTT+TGG 0.323196 3_3:-62479555 Msa0463140:CDS
TGGATTGAAGTACTAGTAAT+TGG 0.328487 3_3:-62477475 Msa0463140:CDS
GTTGCCATGATGGCTTTGTT+TGG 0.346480 3_3:+62480019 None:intergenic
GATGGGCTAGTGTGGTTTCC+TGG 0.346659 3_3:-62479839 Msa0463140:CDS
TTCTTATCTGCATGGTGTAT+TGG 0.357661 3_3:+62480150 None:intergenic
CGTGAGTGTGAGGTTATTCA+TGG 0.369098 3_3:-62479590 Msa0463140:CDS
AATTTGGCTAAGAACCTTGC+AGG 0.371981 3_3:-62479701 Msa0463140:CDS
GGAAAATTCTTTGATCCTCT+TGG 0.373277 3_3:-62477394 Msa0463140:CDS
TTCTTTCTCTTCAGGATCAC+TGG 0.375610 3_3:+62477366 None:intergenic
ATTCTTTGATCCTCTTGGTT+TGG 0.379922 3_3:-62477389 Msa0463140:CDS
ACCTCCGTGTACGGCTGAAA+CGG 0.403781 3_3:+62479632 None:intergenic
GTTACAGGTAAAGGACCTAT+TGG 0.405127 3_3:-62477268 Msa0463140:CDS
TTTAAGATGGAGTAATGAAA+AGG 0.405803 3_3:+62477205 None:intergenic
TGACATGGTGGCGGCGGTTG+CGG 0.412783 3_3:+62479994 None:intergenic
TGGGCTATGCTTGGTGCTCT+TGG 0.414754 3_3:-62479563 Msa0463140:CDS
AGAGATTAAGCATTCTCGTT+TGG 0.426448 3_3:-62477329 Msa0463140:CDS
TTGGCTGTTGAAGCTTTCAC+TGG 0.429779 3_3:-62479536 Msa0463140:CDS
TTAAGATGGAGTAATGAAAA+GGG 0.441268 3_3:+62477206 None:intergenic
CATTCCGGTGGCTGAGCACC+AGG 0.445435 3_3:+62479821 None:intergenic
TGACCGTGGTTTCGATCCAT+TGG 0.446656 3_3:-62479777 Msa0463140:CDS
GTGGAAGGATCATCCTACTT+TGG 0.447717 3_3:-62477532 Msa0463140:CDS
ACGAACTCTTCCCATGTTTG+AGG 0.451082 3_3:+62479940 None:intergenic
GGTTGCGGTGGTTGCCATGA+TGG 0.455247 3_3:+62480009 None:intergenic
GTGAGGTTATTCATGGAAGA+TGG 0.455594 3_3:-62479583 Msa0463140:CDS
CAAGCTGCTGTTACAGGTAA+AGG 0.458377 3_3:-62477277 Msa0463140:CDS
ATCGTCCCATCGAGCCATTC+CGG 0.460017 3_3:+62479806 None:intergenic
CTGCAAATACTCAACAGGTT+TGG 0.465448 3_3:+62479748 None:intergenic
TCAAACTGCAAATACTCAAC+AGG 0.466866 3_3:+62479743 None:intergenic
TGCATGGTGTATTGGATGGT+TGG 0.467324 3_3:+62480158 None:intergenic
ATCAATGTGCTAATTGAGAA+TGG 0.470549 3_3:+62477499 None:intergenic
AGCCACCGGAATGGCTCGAT+GGG 0.472591 3_3:-62479811 Msa0463140:CDS
GACCGTGGTTTCGATCCATT+GGG 0.475235 3_3:-62479776 Msa0463140:CDS
AGTGTGTGACTGTGAGGAGA+AGG 0.478642 3_3:+62480111 None:intergenic
CTGCAAACCAACCTCAAACA+TGG 0.480790 3_3:-62479951 Msa0463140:CDS
TATCTTGCTTCTTATCTGCA+TGG 0.485184 3_3:+62480142 None:intergenic
TAAGCATTCTCGTTTGGCTA+TGG 0.486266 3_3:-62477323 Msa0463140:CDS
CTTAGTACCTAGGTTGAAGA+AGG 0.490118 3_3:+62479916 None:intergenic
AAGGTGGCAATGAAACCAAT+AGG 0.493028 3_3:+62477253 None:intergenic
CTGGCTTTAACTTAGTACCT+AGG 0.494679 3_3:+62479906 None:intergenic
GGCTTCACATGTTATGTCAC+TGG 0.497566 3_3:+62477227 None:intergenic
TTGGCTACATTGAGTTTCAA+AGG 0.497966 3_3:-62477456 Msa0463140:CDS
AGAGTACAAACATACACAAA+TGG 0.505118 3_3:+62477132 None:intergenic
TATCTGCATGGTGTATTGGA+TGG 0.505242 3_3:+62480154 None:intergenic
GTTCGTGCCTTCTTCAACCT+AGG 0.511545 3_3:-62479923 Msa0463140:CDS
GCATTCTCGTTTGGCTATGG+TGG 0.512452 3_3:-62477320 Msa0463140:CDS
CATGGTGGCGGCGGTTGCGG+TGG 0.517325 3_3:+62479997 None:intergenic
CAGCCACCGGAATGGCTCGA+TGG 0.522740 3_3:-62479812 Msa0463140:CDS
GTGTGTGACTGTGAGGAGAA+GGG 0.522971 3_3:+62480112 None:intergenic
CAGAGCTTGACCCAGAGAAA+AGG 0.527322 3_3:-62477429 Msa0463140:CDS
GTTTCCTGGTGCTCAGCCAC+CGG 0.530681 3_3:-62479825 Msa0463140:CDS
GATTTAGGAACAAGGTGTGT+CGG 0.531693 3_3:+62480041 None:intergenic
AAATCCAAACAAAGCCATCA+TGG 0.532737 3_3:-62480023 Msa0463140:exon
CTGGTGCTCAGCCACCGGAA+TGG 0.535531 3_3:-62479820 Msa0463140:CDS
ACTCTTCCCATGTTTGAGGT+TGG 0.539963 3_3:+62479944 None:intergenic
TAAGAAAACAAGAAAGTGAT+GGG 0.544667 3_3:-62479856 Msa0463140:CDS
GGTGTCGCATGGCAAGATGC+TGG 0.547425 3_3:-62479515 Msa0463140:CDS
TGGCTCGATGGGACGATGAT+CGG 0.554790 3_3:-62479800 Msa0463140:CDS
GTGTACGGCTGAAACGGTGT+AGG 0.555155 3_3:+62479638 None:intergenic
TGCAAACCAACCTCAAACAT+GGG 0.555282 3_3:-62479950 Msa0463140:CDS
TGGAAGAGAAAATCCAAAGT+AGG 0.556136 3_3:+62477519 None:intergenic
TGAGGTTATTCATGGAAGAT+GGG 0.560063 3_3:-62479582 Msa0463140:CDS
AAGCTTTCACTGGTGTCGCA+TGG 0.563145 3_3:-62479526 Msa0463140:CDS
CATGGAAGATGGGCTATGCT+TGG 0.567622 3_3:-62479572 Msa0463140:CDS
GTAAGAAAACAAGAAAGTGA+TGG 0.567972 3_3:-62479857 Msa0463140:CDS
CATGTTATGTCACTGGTTGA+AGG 0.575668 3_3:+62477234 None:intergenic
TTTCAGGTAGAGTTGGTGGA+AGG 0.577856 3_3:-62477547 Msa0463140:intron
ACAGGTTTGGCTAATCCCAA+TGG 0.582632 3_3:+62479761 None:intergenic
CGCATGGCAAGATGCTGGAA+AGG 0.585268 3_3:-62479510 Msa0463140:intron
AAGAAAGTGATGGGCTAGTG+TGG 0.588770 3_3:-62479847 Msa0463140:CDS
TGATATTATTGGCACTAGAG+TGG 0.597745 3_3:-62479678 Msa0463140:CDS
TCAGAGGTTTCGTGAGTGTG+AGG 0.598879 3_3:-62479600 Msa0463140:CDS
CAGCTTGAATTGCAAAGATG+AGG 0.604000 3_3:+62477293 None:intergenic
TGCCAATAATATCACCTGCA+AGG 0.604262 3_3:+62479687 None:intergenic
ATGCTGCTTATAGCAACTCA+TGG 0.609996 3_3:-62477095 Msa0463140:three_prime_UTR
GGTGTGTCGGAGGGACAAAG+TGG 0.627622 3_3:+62480054 None:intergenic
TGTACGGCTGAAACGGTGTA+GGG 0.629672 3_3:+62479639 None:intergenic
TTAGGAACAAGGTGTGTCGG+AGG 0.634868 3_3:+62480044 None:intergenic
TAGGAACAAGGTGTGTCGGA+GGG 0.644266 3_3:+62480045 None:intergenic
ATCCCAATGGATCGAAACCA+CGG 0.649765 3_3:+62479774 None:intergenic
GGGACGATGATCGGTGACCG+TGG 0.653588 3_3:-62479791 Msa0463140:CDS
TACACCGTTTCAGCCGTACA+CGG 0.655431 3_3:-62479636 Msa0463140:CDS
AAAATGTGACATGGTGGCGG+CGG 0.656643 3_3:+62479988 None:intergenic
GTCCCATCGAGCCATTCCGG+TGG 0.656729 3_3:+62479809 None:intergenic
TTTGTTTGGATTTAGGAACA+AGG 0.661674 3_3:+62480033 None:intergenic
TGACTGTGAGGAGAAGGGAG+TGG 0.671188 3_3:+62480117 None:intergenic
GTGTGTCGGAGGGACAAAGT+GGG 0.677501 3_3:+62480055 None:intergenic
GGATCACTGGCCAAACCAAG+AGG 0.688433 3_3:+62477379 None:intergenic
GAGAAAAGGTTATACCCAGG+TGG 0.695158 3_3:-62477415 Msa0463140:CDS
TCATAGAGTGTGTGACTGTG+AGG 0.695412 3_3:+62480105 None:intergenic
ACCGTTTCAGCCGTACACGG+AGG 0.695892 3_3:-62479633 Msa0463140:CDS
CCAGAGAAAAGGTTATACCC+AGG 0.700487 3_3:-62477418 Msa0463140:CDS
GTTATGTCACTGGTTGAAGG+TGG 0.717219 3_3:+62477237 None:intergenic
CACTAGAGTGGAGAGTACAG+AGG 0.719429 3_3:-62479666 Msa0463140:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTAAATATGATTTTTTTTG+AGG + chr3_3:62478101-62478120 None:intergenic 10.0%
!! AAAAATCATATTTAATATCA+TGG - chr3_3:62478105-62478124 Msa0463140:intron 10.0%
!!! AGTTTTGATAAAAATTTATA+TGG + chr3_3:62478285-62478304 None:intergenic 10.0%
!!! AAATTAACTAAATTTTAAGA+TGG + chr3_3:62479947-62479966 None:intergenic 10.0%
!! AAAAAAAAAATTAGATGAGT+TGG - chr3_3:62477736-62477755 Msa0463140:intron 15.0%
!! AAAAAACATACCAATTTATA+TGG - chr3_3:62477947-62477966 Msa0463140:intron 15.0%
!! AACAATGTATAACATATAAA+AGG + chr3_3:62478452-62478471 None:intergenic 15.0%
!! TTGTATTAGTATAGTTTATA+TGG - chr3_3:62478772-62478791 Msa0463140:intron 15.0%
!! ATTGAATAACAACAATGAAA+AGG + chr3_3:62477667-62477686 None:intergenic 20.0%
!! ATTGCATTATCCATATAAAT+TGG + chr3_3:62477960-62477979 None:intergenic 20.0%
!! ATTCAAATATTGGATCAATT+TGG - chr3_3:62477978-62477997 Msa0463140:intron 20.0%
!!! TTTTTTTTTGTCAAGTAACA+TGG - chr3_3:62478366-62478385 Msa0463140:intron 20.0%
!!! CACATTATTATTTGATTTGT+AGG - chr3_3:62478837-62478856 Msa0463140:intron 20.0%
!!! ACATGTCTTTTTTAATCATA+CGG + chr3_3:62479096-62479115 None:intergenic 20.0%
!! ATGATTAAAAAAGACATGTT+TGG - chr3_3:62479097-62479116 Msa0463140:intron 20.0%
!!! TTTTTCAATTAAAACTGCAA+GGG + chr3_3:62479245-62479264 None:intergenic 20.0%
!!! ATTTTTCAATTAAAACTGCA+AGG + chr3_3:62479246-62479265 None:intergenic 20.0%
!! TAATTAAAGGGAAATGTTAA+CGG - chr3_3:62479273-62479292 Msa0463140:intron 20.0%
!! TTTTTCACTTCCTTTTTCTT+AGG + chr3_3:62477258-62477277 None:intergenic 25.0%
! TAAGAAAACAAGAAAGTGAT+GGG - chr3_3:62477280-62477299 Msa0463140:CDS 25.0%
!!! AAATTAGATGAGTTGGATTT+TGG - chr3_3:62477743-62477762 Msa0463140:intron 25.0%
! GGATAATGCAATTCAAATAT+TGG - chr3_3:62477968-62477987 Msa0463140:intron 25.0%
! GATTTGAAAATCTTCGTTAA+CGG + chr3_3:62478062-62478081 None:intergenic 25.0%
!! AAATACCATTTAAGACGAAT+AGG - chr3_3:62478396-62478415 Msa0463140:intron 25.0%
!! TTGAACAAATGAAAGTGTAA+AGG + chr3_3:62478575-62478594 None:intergenic 25.0%
! TTGTTCAATTGATCTTTCAT+TGG - chr3_3:62478587-62478606 Msa0463140:intron 25.0%
! TGTTCAATTGATCTTTCATT+GGG - chr3_3:62478588-62478607 Msa0463140:intron 25.0%
!! GATTTTATGTGTATTAGCTA+CGG - chr3_3:62478685-62478704 Msa0463140:intron 25.0%
!! ATTTTTGTCTTCATTGTTCT+TGG + chr3_3:62478816-62478835 None:intergenic 25.0%
!!! CATGTCTTTTTTAATCATAC+GGG + chr3_3:62479095-62479114 None:intergenic 25.0%
! TATAGCATATGTGTTTAAAG+CGG + chr3_3:62479466-62479485 None:intergenic 25.0%
!! ACTACTATCTAACTATTTTC+AGG - chr3_3:62479573-62479592 Msa0463140:CDS 25.0%
! TTAAGATGGAGTAATGAAAA+GGG + chr3_3:62479933-62479952 None:intergenic 25.0%
!! TTTAAGATGGAGTAATGAAA+AGG + chr3_3:62479934-62479953 None:intergenic 25.0%
TTTGTTTGGATTTAGGAACA+AGG + chr3_3:62477106-62477125 None:intergenic 30.0%
GTAAGAAAACAAGAAAGTGA+TGG - chr3_3:62477279-62477298 Msa0463140:CDS 30.0%
! GTTGGATTTTGGATTCATTA+AGG - chr3_3:62477754-62477773 Msa0463140:intron 30.0%
! TGCTACTTCAATCTTAATGT+TGG + chr3_3:62477786-62477805 None:intergenic 30.0%
TGGTTTGATGTTCAAAACTA+TGG - chr3_3:62478125-62478144 Msa0463140:intron 30.0%
!!! TTTTTTGTCAAGTAACATGG+TGG - chr3_3:62478369-62478388 Msa0463140:intron 30.0%
AAAAGCTTAACCAGGAATAT+TGG + chr3_3:62478753-62478772 None:intergenic 30.0%
CTAATACAAAAAGCTTAACC+AGG + chr3_3:62478761-62478780 None:intergenic 30.0%
!! AGCTTATTTTCATGAGCTTA+CGG - chr3_3:62479146-62479165 Msa0463140:intron 30.0%
TGACTAATAAGCTAGCTAAT+AGG + chr3_3:62479442-62479461 None:intergenic 30.0%
! GCTTTAAACACATATGCTAT+AGG - chr3_3:62479465-62479484 Msa0463140:intron 30.0%
TGTCTTTGTTCGGTAAAAAA+TGG + chr3_3:62479510-62479529 None:intergenic 30.0%
GAACTAACTTTGTCTTTGTT+CGG + chr3_3:62479520-62479539 None:intergenic 30.0%
!!! TAACTATTTTCAGGTAGAGT+TGG - chr3_3:62479582-62479601 Msa0463140:CDS 30.0%
ATCAATGTGCTAATTGAGAA+TGG + chr3_3:62479640-62479659 None:intergenic 30.0%
TCTCAATTAGCACATTGATA+TGG - chr3_3:62479641-62479660 Msa0463140:CDS 30.0%
! TGGATTGAAGTACTAGTAAT+TGG - chr3_3:62479661-62479680 Msa0463140:CDS 30.0%
AGAGTACAAACATACACAAA+TGG + chr3_3:62480007-62480026 None:intergenic 30.0%
TTCTTATCTGCATGGTGTAT+TGG + chr3_3:62476989-62477008 None:intergenic 35.0%
TATCTTGCTTCTTATCTGCA+TGG + chr3_3:62476997-62477016 None:intergenic 35.0%
!! TGATGGCTTTGTTTGGATTT+AGG + chr3_3:62477113-62477132 None:intergenic 35.0%
AAATCCAAACAAAGCCATCA+TGG - chr3_3:62477113-62477132 Msa0463140:three_prime_UTR 35.0%
TCAAACTGCAAATACTCAAC+AGG + chr3_3:62477396-62477415 None:intergenic 35.0%
AACCTTGCAGGTGATATTAT+TGG - chr3_3:62477447-62477466 Msa0463140:CDS 35.0%
TGATATTATTGGCACTAGAG+TGG - chr3_3:62477458-62477477 Msa0463140:CDS 35.0%
TGAGGTTATTCATGGAAGAT+GGG - chr3_3:62477554-62477573 Msa0463140:intron 35.0%
GAGTTGAACTCATGTTATTG+TGG - chr3_3:62477843-62477862 Msa0463140:intron 35.0%
TATAACTCTGCCAAGTATGT+TGG + chr3_3:62477897-62477916 None:intergenic 35.0%
CAAAATTGTGGTTCGTGTTT+AGG + chr3_3:62478035-62478054 None:intergenic 35.0%
GTTAACGGTGTTCAAAATTG+TGG + chr3_3:62478047-62478066 None:intergenic 35.0%
CTCTACCTATTCGTCTTAAA+TGG + chr3_3:62478404-62478423 None:intergenic 35.0%
! TGTTTCTACCAAATGAGCTA+TGG - chr3_3:62478468-62478487 Msa0463140:intron 35.0%
TAGAGTGTGTGGAAATTAGA+AGG - chr3_3:62478620-62478639 Msa0463140:intron 35.0%
AGAGTGTGTGGAAATTAGAA+GGG - chr3_3:62478621-62478640 Msa0463140:intron 35.0%
TAGCTACGGACAATGTAATA+TGG - chr3_3:62478699-62478718 Msa0463140:intron 35.0%
! CATACACTTTGTCACTTGTT+TGG + chr3_3:62479027-62479046 None:intergenic 35.0%
CAAGTGACAAAGTGTATGTT+TGG - chr3_3:62479029-62479048 Msa0463140:intron 35.0%
! CACTGGTTAAGGACTTTAAA+TGG - chr3_3:62479296-62479315 Msa0463140:intron 35.0%
AGTTTGTGTAATCAGTGCAT+TGG - chr3_3:62479332-62479351 Msa0463140:intron 35.0%
AGCTAGCTAATAGGTCATAA+CGG + chr3_3:62479433-62479452 None:intergenic 35.0%
CTTTGTTCGGTAAAAAATGG+CGG + chr3_3:62479507-62479526 None:intergenic 35.0%
TGGAAGAGAAAATCCAAAGT+AGG + chr3_3:62479620-62479639 None:intergenic 35.0%
TTGGCTACATTGAGTTTCAA+AGG - chr3_3:62479680-62479699 Msa0463140:CDS 35.0%
! GATCAAAGAATTTTCCACCT+GGG + chr3_3:62479738-62479757 None:intergenic 35.0%
GGAAAATTCTTTGATCCTCT+TGG - chr3_3:62479742-62479761 Msa0463140:CDS 35.0%
ATTCTTTGATCCTCTTGGTT+TGG - chr3_3:62479747-62479766 Msa0463140:CDS 35.0%
TGAAGTCTTTCTTTCTCTTC+AGG + chr3_3:62479781-62479800 None:intergenic 35.0%
AGAGATTAAGCATTCTCGTT+TGG - chr3_3:62479807-62479826 Msa0463140:CDS 35.0%
TATCTGCATGGTGTATTGGA+TGG + chr3_3:62476985-62477004 None:intergenic 40.0%
GATTTAGGAACAAGGTGTGT+CGG + chr3_3:62477098-62477117 None:intergenic 40.0%
GAAAAAATGTGACATGGTGG+CGG + chr3_3:62477154-62477173 None:intergenic 40.0%
!!! GCCACCATGTCACATTTTTT+CGG - chr3_3:62477153-62477172 Msa0463140:three_prime_UTR 40.0%
! AGTGCCGAAAAAATGTGACA+TGG + chr3_3:62477160-62477179 None:intergenic 40.0%
TGCAAACCAACCTCAAACAT+GGG - chr3_3:62477186-62477205 Msa0463140:three_prime_UTR 40.0%
! CTTAGTACCTAGGTTGAAGA+AGG + chr3_3:62477223-62477242 None:intergenic 40.0%
!! CTGGCTTTAACTTAGTACCT+AGG + chr3_3:62477233-62477252 None:intergenic 40.0%
AAAGCCAGCACCTAAGAAAA+AGG - chr3_3:62477245-62477264 Msa0463140:CDS 40.0%
! ACTTCCTTTTTCTTAGGTGC+TGG + chr3_3:62477252-62477271 None:intergenic 40.0%
CTGCAAATACTCAACAGGTT+TGG + chr3_3:62477391-62477410 None:intergenic 40.0%
TGACTCACTTGACCAGAATT+TGG - chr3_3:62477419-62477438 Msa0463140:CDS 40.0%
CAAGGTTCTTAGCCAAATTC+TGG + chr3_3:62477434-62477453 None:intergenic 40.0%
AATTTGGCTAAGAACCTTGC+AGG - chr3_3:62477435-62477454 Msa0463140:CDS 40.0%
TGCCAATAATATCACCTGCA+AGG + chr3_3:62477452-62477471 None:intergenic 40.0%
ATTCCAAAAACCTCCGTGTA+CGG + chr3_3:62477516-62477535 None:intergenic 40.0%
GTGAGGTTATTCATGGAAGA+TGG - chr3_3:62477553-62477572 Msa0463140:intron 40.0%
AGCATTTACAAACACTGTCG+AGG - chr3_3:62477802-62477821 Msa0463140:intron 40.0%
ACCAACTAGACCAACATACT+TGG - chr3_3:62477884-62477903 Msa0463140:intron 40.0%
TACCAAATGAGCTATGGTCA+TGG - chr3_3:62478474-62478493 Msa0463140:intron 40.0%
ACCAAATGAGCTATGGTCAT+GGG - chr3_3:62478475-62478494 Msa0463140:intron 40.0%
GAGTGTGTGGAAATTAGAAG+GGG - chr3_3:62478622-62478641 Msa0463140:intron 40.0%
GACAATGTAATATGGTCCCT+AGG - chr3_3:62478707-62478726 Msa0463140:intron 40.0%
AGAATCACATCCATGACCTA+GGG + chr3_3:62478726-62478745 None:intergenic 40.0%
!! GTTGTGTAGCTTGTTGGAAA+GGG + chr3_3:62478891-62478910 None:intergenic 40.0%
!! AGTTGTGTAGCTTGTTGGAA+AGG + chr3_3:62478892-62478911 None:intergenic 40.0%
! GAACAAGTTGTGTAGCTTGT+TGG + chr3_3:62478897-62478916 None:intergenic 40.0%
!! AATGTTAACGGCACTGGTTA+AGG - chr3_3:62479285-62479304 Msa0463140:intron 40.0%
!!! CTATTTTCAGGTAGAGTTGG+TGG - chr3_3:62479585-62479604 Msa0463140:CDS 40.0%
! CTGGGTATAACCTTTTCTCT+GGG + chr3_3:62479720-62479739 None:intergenic 40.0%
! GGATCAAAGAATTTTCCACC+TGG + chr3_3:62479739-62479758 None:intergenic 40.0%
TTCTTTCTCTTCAGGATCAC+TGG + chr3_3:62479773-62479792 None:intergenic 40.0%
TAAGCATTCTCGTTTGGCTA+TGG - chr3_3:62479813-62479832 Msa0463140:CDS 40.0%
CAGCTTGAATTGCAAAGATG+AGG + chr3_3:62479846-62479865 None:intergenic 40.0%
GTTACAGGTAAAGGACCTAT+TGG - chr3_3:62479868-62479887 Msa0463140:CDS 40.0%
AAGGTGGCAATGAAACCAAT+AGG + chr3_3:62479886-62479905 None:intergenic 40.0%
! CATGTTATGTCACTGGTTGA+AGG + chr3_3:62479905-62479924 None:intergenic 40.0%
! ATGCTGCTTATAGCAACTCA+TGG - chr3_3:62480041-62480060 Msa0463140:five_prime_UTR 40.0%
TGCATGGTGTATTGGATGGT+TGG + chr3_3:62476981-62477000 None:intergenic 45.0%
TCATAGAGTGTGTGACTGTG+AGG + chr3_3:62477034-62477053 None:intergenic 45.0%
!! GTTGCCATGATGGCTTTGTT+TGG + chr3_3:62477120-62477139 None:intergenic 45.0%
GCCGAAAAAATGTGACATGG+TGG + chr3_3:62477157-62477176 None:intergenic 45.0%
CTGCAAACCAACCTCAAACA+TGG - chr3_3:62477185-62477204 Msa0463140:three_prime_UTR 45.0%
! ACTCTTCCCATGTTTGAGGT+TGG + chr3_3:62477195-62477214 None:intergenic 45.0%
ACGAACTCTTCCCATGTTTG+AGG + chr3_3:62477199-62477218 None:intergenic 45.0%
!! AAGAAAGTGATGGGCTAGTG+TGG - chr3_3:62477289-62477308 Msa0463140:CDS 45.0%
ATCCCAATGGATCGAAACCA+CGG + chr3_3:62477365-62477384 None:intergenic 45.0%
ACAGGTTTGGCTAATCCCAA+TGG + chr3_3:62477378-62477397 None:intergenic 45.0%
!!! CGGAGGTTTTTGGAATTCAG+AGG - chr3_3:62477520-62477539 Msa0463140:CDS 45.0%
CGTGAGTGTGAGGTTATTCA+TGG - chr3_3:62477546-62477565 Msa0463140:intron 45.0%
TTGGCTGTTGAAGCTTTCAC+TGG - chr3_3:62477600-62477619 Msa0463140:intron 45.0%
! GCCAAGTATGTTGGTCTAGT+TGG + chr3_3:62477888-62477907 None:intergenic 45.0%
TCCCATGACCATAGCTCATT+TGG + chr3_3:62478479-62478498 None:intergenic 45.0%
TGATGTCTATGTTCCCGTGA+TGG - chr3_3:62478529-62478548 Msa0463140:intron 45.0%
GGGGAAACTATGTGACAAGA+CGG - chr3_3:62478641-62478660 Msa0463140:intron 45.0%
GGGAAACTATGTGACAAGAC+GGG - chr3_3:62478642-62478661 Msa0463140:intron 45.0%
GTAATATGGTCCCTAGGTCA+TGG - chr3_3:62478713-62478732 Msa0463140:intron 45.0%
CAGAATCACATCCATGACCT+AGG + chr3_3:62478727-62478746 None:intergenic 45.0%
GATTCTGTCGCCAATATTCC+TGG - chr3_3:62478740-62478759 Msa0463140:intron 45.0%
AAGGGAAATGTTAACGGCAC+TGG - chr3_3:62479279-62479298 Msa0463140:intron 45.0%
!! TTTCAGGTAGAGTTGGTGGA+AGG - chr3_3:62479589-62479608 Msa0463140:CDS 45.0%
GTGGAAGGATCATCCTACTT+TGG - chr3_3:62479604-62479623 Msa0463140:CDS 45.0%
! CCTGGGTATAACCTTTTCTC+TGG + chr3_3:62479721-62479740 None:intergenic 45.0%
CCAGAGAAAAGGTTATACCC+AGG - chr3_3:62479718-62479737 Msa0463140:CDS 45.0%
GAGAAAAGGTTATACCCAGG+TGG - chr3_3:62479721-62479740 Msa0463140:CDS 45.0%
GCAATTCAAGCTGCTGTTAC+AGG - chr3_3:62479853-62479872 Msa0463140:CDS 45.0%
CAAGCTGCTGTTACAGGTAA+AGG - chr3_3:62479859-62479878 Msa0463140:CDS 45.0%
! GTTATGTCACTGGTTGAAGG+TGG + chr3_3:62479902-62479921 None:intergenic 45.0%
GGCTTCACATGTTATGTCAC+TGG + chr3_3:62479912-62479931 None:intergenic 45.0%
!! AAAAATTAACTATTAATTAA+AGG - chr3_3:62479260-62479279 Msa0463140:intron 5.0%
!! AAAATTAACTATTAATTAAA+GGG - chr3_3:62479261-62479280 Msa0463140:intron 5.0%
GTGTGTGACTGTGAGGAGAA+GGG + chr3_3:62477027-62477046 None:intergenic 50.0%
AGTGTGTGACTGTGAGGAGA+AGG + chr3_3:62477028-62477047 None:intergenic 50.0%
TAGGAACAAGGTGTGTCGGA+GGG + chr3_3:62477094-62477113 None:intergenic 50.0%
TTAGGAACAAGGTGTGTCGG+AGG + chr3_3:62477095-62477114 None:intergenic 50.0%
!! AAAATGTGACATGGTGGCGG+CGG + chr3_3:62477151-62477170 None:intergenic 50.0%
GTTCGTGCCTTCTTCAACCT+AGG - chr3_3:62477213-62477232 Msa0463140:three_prime_UTR 50.0%
TGACCGTGGTTTCGATCCAT+TGG - chr3_3:62477359-62477378 Msa0463140:CDS 50.0%
GACCGTGGTTTCGATCCATT+GGG - chr3_3:62477360-62477379 Msa0463140:CDS 50.0%
! CACTAGAGTGGAGAGTACAG+AGG - chr3_3:62477470-62477489 Msa0463140:CDS 50.0%
TGTACGGCTGAAACGGTGTA+GGG + chr3_3:62477500-62477519 None:intergenic 50.0%
TACACCGTTTCAGCCGTACA+CGG - chr3_3:62477500-62477519 Msa0463140:CDS 50.0%
TCAGAGGTTTCGTGAGTGTG+AGG - chr3_3:62477536-62477555 Msa0463140:CDS 50.0%
!! CATGGAAGATGGGCTATGCT+TGG - chr3_3:62477564-62477583 Msa0463140:intron 50.0%
!! AAGCTTTCACTGGTGTCGCA+TGG - chr3_3:62477610-62477629 Msa0463140:intron 50.0%
AAACCGACACAGCACCATCA+CGG + chr3_3:62478546-62478565 None:intergenic 50.0%
!! TGGTGCTGTGTCGGTTTCAT+AGG - chr3_3:62478549-62478568 Msa0463140:intron 50.0%
GGATCAGATGCTAGAGTGTG+TGG - chr3_3:62478609-62478628 Msa0463140:intron 50.0%
CAGAGCTTGACCCAGAGAAA+AGG - chr3_3:62479707-62479726 Msa0463140:CDS 50.0%
GCATTCTCGTTTGGCTATGG+TGG - chr3_3:62479816-62479835 Msa0463140:CDS 50.0%
TGACTGTGAGGAGAAGGGAG+TGG + chr3_3:62477022-62477041 None:intergenic 55.0%
GTGTGTCGGAGGGACAAAGT+GGG + chr3_3:62477084-62477103 None:intergenic 55.0%
!! GATGGGCTAGTGTGGTTTCC+TGG - chr3_3:62477297-62477316 Msa0463140:CDS 55.0%
ATCGTCCCATCGAGCCATTC+CGG + chr3_3:62477333-62477352 None:intergenic 55.0%
TGGCTCGATGGGACGATGAT+CGG - chr3_3:62477336-62477355 Msa0463140:CDS 55.0%
GTGTACGGCTGAAACGGTGT+AGG + chr3_3:62477501-62477520 None:intergenic 55.0%
ACCTCCGTGTACGGCTGAAA+CGG + chr3_3:62477507-62477526 None:intergenic 55.0%
! CAGCCGTACACGGAGGTTTT+TGG - chr3_3:62477510-62477529 Msa0463140:CDS 55.0%
!! TGGGCTATGCTTGGTGCTCT+TGG - chr3_3:62477573-62477592 Msa0463140:intron 55.0%
!! GCTTGGTGCTCTTGGTGCTT+TGG - chr3_3:62477581-62477600 Msa0463140:intron 55.0%
CGCATGGCAAGATGCTGGAA+AGG - chr3_3:62477626-62477645 Msa0463140:intron 55.0%
!! TTCCCGTGATGGTGCTGTGT+CGG - chr3_3:62478540-62478559 Msa0463140:intron 55.0%
AACCGACACAGCACCATCAC+GGG + chr3_3:62478545-62478564 None:intergenic 55.0%
GGATCACTGGCCAAACCAAG+AGG + chr3_3:62479760-62479779 None:intergenic 55.0%
GGTGTGTCGGAGGGACAAAG+TGG + chr3_3:62477085-62477104 None:intergenic 60.0%
GGTTGCGGTGGTTGCCATGA+TGG + chr3_3:62477130-62477149 None:intergenic 60.0%
GTTTCCTGGTGCTCAGCCAC+CGG - chr3_3:62477311-62477330 Msa0463140:CDS 60.0%
AGCCACCGGAATGGCTCGAT+GGG - chr3_3:62477325-62477344 Msa0463140:CDS 60.0%
ACCGTTTCAGCCGTACACGG+AGG - chr3_3:62477503-62477522 Msa0463140:CDS 60.0%
! GGTGTCGCATGGCAAGATGC+TGG - chr3_3:62477621-62477640 Msa0463140:intron 60.0%
!! TGACATGGTGGCGGCGGTTG+CGG + chr3_3:62477145-62477164 None:intergenic 65.0%
CATTCCGGTGGCTGAGCACC+AGG + chr3_3:62477318-62477337 None:intergenic 65.0%
CTGGTGCTCAGCCACCGGAA+TGG - chr3_3:62477316-62477335 Msa0463140:CDS 65.0%
CAGCCACCGGAATGGCTCGA+TGG - chr3_3:62477324-62477343 Msa0463140:CDS 65.0%
GTCCCATCGAGCCATTCCGG+TGG + chr3_3:62477330-62477349 None:intergenic 65.0%
GGGACGATGATCGGTGACCG+TGG - chr3_3:62477345-62477364 Msa0463140:CDS 65.0%
!! CATGGTGGCGGCGGTTGCGG+TGG + chr3_3:62477142-62477161 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 62476972 62480186 62476972 ID=Msa0463140;Name=Msa0463140
chr3_3 mRNA 62476972 62480186 62476972 ID=Msa0463140-mRNA-1;Parent=Msa0463140;Name=Msa0463140-mRNA-1;_AED=0.01;_eAED=0.01;_QI=160|1|1|1|1|1|2|271|278
chr3_3 exon 62476972 62477563 62476972 ID=Msa0463140-mRNA-1:exon:13361;Parent=Msa0463140-mRNA-1
chr3_3 exon 62479511 62480186 62479511 ID=Msa0463140-mRNA-1:exon:13360;Parent=Msa0463140-mRNA-1
chr3_3 five_prime_UTR 62480027 62480186 62480027 ID=Msa0463140-mRNA-1:five_prime_utr;Parent=Msa0463140-mRNA-1
chr3_3 CDS 62479511 62480026 62479511 ID=Msa0463140-mRNA-1:cds;Parent=Msa0463140-mRNA-1
chr3_3 CDS 62477243 62477563 62477243 ID=Msa0463140-mRNA-1:cds;Parent=Msa0463140-mRNA-1
chr3_3 three_prime_UTR 62476972 62477242 62476972 ID=Msa0463140-mRNA-1:three_prime_utr;Parent=Msa0463140-mRNA-1
Gene Sequence

>Msa0463140

ATGGCAACCACCGCAACCGCCGCCACCATGTCACATTTTTTCGGCACTAGTCTCTGCAAACCAACCTCAAACATGGGAAGAGTTCGTGCCTTCTTCAACCTAGGTACTAAGTTAAAGCCAGCACCTAAGAAAAAGGAAGTGAAAAAAGTAAGAAAACAAGAAAGTGATGGGCTAGTGTGGTTTCCTGGTGCTCAGCCACCGGAATGGCTCGATGGGACGATGATCGGTGACCGTGGTTTCGATCCATTGGGATTAGCCAAACCTGTTGAGTATTTGCAGTTTGATCTTGACTCACTTGACCAGAATTTGGCTAAGAACCTTGCAGGTGATATTATTGGCACTAGAGTGGAGAGTACAGAGGTTAACCCTACACCGTTTCAGCCGTACACGGAGGTTTTTGGAATTCAGAGGTTTCGTGAGTGTGAGGTTATTCATGGAAGATGGGCTATGCTTGGTGCTCTTGGTGCTTTGGCTGTTGAAGCTTTCACTGGTGTCGCATGGCAAGATGCTGGAAAGGTAGAGTTGGTGGAAGGATCATCCTACTTTGGATTTTCTCTTCCATTCTCAATTAGCACATTGATATGGATTGAAGTACTAGTAATTGGCTACATTGAGTTTCAAAGGAATGCAGAGCTTGACCCAGAGAAAAGGTTATACCCAGGTGGAAAATTCTTTGATCCTCTTGGTTTGGCCAGTGATCCTGAAGAGAAAGAAAGACTTCAACTTGCAGAGATTAAGCATTCTCGTTTGGCTATGGTGGTTTTCCTCATCTTTGCAATTCAAGCTGCTGTTACAGGTAAAGGACCTATTGGTTTCATTGCCACCTTCAACCAGTGA

Protein sequence

>Msa0463140

MATTATAATMSHFFGTSLCKPTSNMGRVRAFFNLGTKLKPAPKKKEVKKVRKQESDGLVWFPGAQPPEWLDGTMIGDRGFDPLGLAKPVEYLQFDLDSLDQNLAKNLAGDIIGTRVESTEVNPTPFQPYTEVFGIQRFRECEVIHGRWAMLGALGALAVEAFTGVAWQDAGKVELVEGSSYFGFSLPFSISTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLASDPEEKERLQLAEIKHSRLAMVVFLIFAIQAAVTGKGPIGFIATFNQ*