Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1069430 | XP_024626991.1 | 85.000 | 140 | 13 | 3 | 1 | 135 | 1 | 137 | 3.46e-69 | 214 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1069430 | A0A396H3D5 | 85.000 | 140 | 13 | 3 | 1 | 135 | 1 | 137 | 1.65e-69 | 214 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0017980 | Msa1069430 | 0.807002 | 6.253356e-50 | -8.615850e-47 |
| Msa0024320 | Msa1069430 | 0.826108 | 3.251238e-54 | -8.615850e-47 |
| Msa0029280 | Msa1069430 | 0.817072 | 3.985295e-52 | -8.615850e-47 |
| Msa0065400 | Msa1069430 | 0.810995 | 8.735418e-51 | -8.615850e-47 |
| Msa0065520 | Msa1069430 | 0.824868 | 6.393166e-54 | -8.615850e-47 |
| Msa0075990 | Msa1069430 | 0.800123 | 1.670824e-48 | -8.615850e-47 |
| Msa0076100 | Msa1069430 | 0.835503 | 1.616072e-56 | -8.615850e-47 |
| Msa0076990 | Msa1069430 | 0.800166 | 1.637170e-48 | -8.615850e-47 |
| Msa0095890 | Msa1069430 | 0.805536 | 1.273371e-49 | -8.615850e-47 |
| Msa0097730 | Msa1069430 | 0.817679 | 2.909330e-52 | -8.615850e-47 |
| Msa0646030 | Msa1069430 | 0.832736 | 7.972747e-56 | -8.615850e-47 |
| Msa0654560 | Msa1069430 | 0.826760 | 2.272948e-54 | -8.615850e-47 |
| Msa0660070 | Msa1069430 | 0.814912 | 1.210003e-51 | -8.615850e-47 |
| Msa0662230 | Msa1069430 | 0.820627 | 6.206443e-53 | -8.615850e-47 |
| Msa0692480 | Msa1069430 | 0.800614 | 1.327117e-48 | -8.615850e-47 |
| Msa0696600 | Msa1069430 | 0.817145 | 3.837442e-52 | -8.615850e-47 |
| Msa0707270 | Msa1069430 | 0.832148 | 1.115411e-55 | -8.615850e-47 |
| Msa0796840 | Msa1069430 | 0.830467 | 2.889717e-55 | -8.615850e-47 |
| Msa0797180 | Msa1069430 | 0.817658 | 2.941859e-52 | -8.615850e-47 |
| Msa0829970 | Msa1069430 | 0.804503 | 2.093813e-49 | -8.615850e-47 |
| Msa0832270 | Msa1069430 | 0.810762 | 9.811155e-51 | -8.615850e-47 |
| Msa0833200 | Msa1069430 | 0.801570 | 8.461523e-49 | -8.615850e-47 |
| Msa0835050 | Msa1069430 | 0.804746 | 1.863061e-49 | -8.615850e-47 |
| Msa0127060 | Msa1069430 | 0.803818 | 2.906697e-49 | -8.615850e-47 |
| Msa0133390 | Msa1069430 | 0.830144 | 3.465649e-55 | -8.615850e-47 |
| Msa0148140 | Msa1069430 | 0.802312 | 5.955251e-49 | -8.615850e-47 |
| Msa0163400 | Msa1069430 | 0.820174 | 7.883048e-53 | -8.615850e-47 |
| Msa0169320 | Msa1069430 | 0.825664 | 4.144384e-54 | -8.615850e-47 |
| Msa0181560 | Msa1069430 | 0.839355 | 1.665508e-57 | -8.615850e-47 |
| Msa0184800 | Msa1069430 | 0.833095 | 6.492165e-56 | -8.615850e-47 |
| Msa0184900 | Msa1069430 | 0.840836 | 6.838302e-58 | -8.615850e-47 |
| Msa0190400 | Msa1069430 | 0.805835 | 1.102048e-49 | -8.615850e-47 |
| Msa0225080 | Msa1069430 | 0.802515 | 5.409090e-49 | -8.615850e-47 |
| Msa0375570 | Msa1069430 | 0.801674 | 8.053548e-49 | -8.615850e-47 |
| Msa0382020 | Msa1069430 | 0.819434 | 1.163800e-52 | -8.615850e-47 |
| Msa0384140 | Msa1069430 | 0.809118 | 2.216470e-50 | -8.615850e-47 |
| Msa0428300 | Msa1069430 | 0.820180 | 7.859597e-53 | -8.615850e-47 |
| Msa0431550 | Msa1069430 | 0.802852 | 4.608997e-49 | -8.615850e-47 |
| Msa0434830 | Msa1069430 | 0.814069 | 1.859136e-51 | -8.615850e-47 |
| Msa0476560 | Msa1069430 | 0.800851 | 1.187040e-48 | -8.615850e-47 |
| Msa1028890 | Msa1069430 | 0.807936 | 3.962672e-50 | -8.615850e-47 |
| Msa1029510 | Msa1069430 | 0.820764 | 5.772359e-53 | -8.615850e-47 |
| Msa1036260 | Msa1069430 | 0.811299 | 7.503182e-51 | -8.615850e-47 |
| Msa1056590 | Msa1069430 | 0.800814 | 1.208170e-48 | -8.615850e-47 |
| Msa1069430 | Msa1076650 | 0.811403 | 7.124968e-51 | -8.615850e-47 |
| Msa1069430 | Msa1078600 | 0.816560 | 5.193585e-52 | -8.615850e-47 |
| Msa1069430 | Msa1078770 | 0.816478 | 5.416809e-52 | -8.615850e-47 |
| Msa1069430 | Msa1118870 | 0.800083 | 1.701674e-48 | -8.615850e-47 |
| Msa1069430 | Msa1130850 | 0.809487 | 1.846671e-50 | -8.615850e-47 |
| Msa1069430 | Msa1157300 | 0.990540 | 4.016940e-183 | -8.615850e-47 |
| Msa1069430 | Msa1169600 | 0.801235 | 9.907006e-49 | -8.615850e-47 |
| Msa1069430 | Msa1223520 | 0.800413 | 1.457877e-48 | -8.615850e-47 |
| Msa1069430 | Msa1228600 | 0.814571 | 1.439671e-51 | -8.615850e-47 |
| Msa1069430 | Msa1286470 | 0.808345 | 3.241955e-50 | -8.615850e-47 |
| Msa1069430 | Msa1291070 | 0.800694 | 1.277818e-48 | -8.615850e-47 |
| Msa1069430 | Msa1301610 | 0.816751 | 4.706094e-52 | -8.615850e-47 |
| Msa1069430 | Msa1338600 | 0.820248 | 7.581571e-53 | -8.615850e-47 |
| Msa1069430 | Msa1364420 | 0.803058 | 4.178939e-49 | -8.615850e-47 |
| Msa1069430 | Msa1372680 | 0.831875 | 1.302778e-55 | -8.615850e-47 |
| Msa1069430 | Msa1393550 | 0.811033 | 8.570642e-51 | -8.615850e-47 |
| Msa1069430 | Msa1401640 | 0.812939 | 3.294083e-51 | -8.615850e-47 |
| Msa1069430 | Msa1412330 | 0.801659 | 8.111660e-49 | -8.615850e-47 |
| Msa1069430 | Msa1412810 | 0.818518 | 1.879806e-52 | -8.615850e-47 |
| Msa1069430 | Msa1420590 | 0.801653 | 8.135824e-49 | -8.615850e-47 |
| Msa1069430 | Msa1426310 | 0.812655 | 3.800453e-51 | -8.615850e-47 |
| Msa0259570 | Msa1069430 | 0.802694 | 4.967159e-49 | -8.615850e-47 |
| Msa0267130 | Msa1069430 | 0.808112 | 3.634518e-50 | -8.615850e-47 |
| Msa0304070 | Msa1069430 | 0.808408 | 3.143414e-50 | -8.615850e-47 |
| Msa0311130 | Msa1069430 | 0.806757 | 7.042776e-50 | -8.615850e-47 |
| Msa0318280 | Msa1069430 | 0.808807 | 2.582893e-50 | -8.615850e-47 |
| Msa0519070 | Msa1069430 | 0.821722 | 3.470870e-53 | -8.615850e-47 |
| Msa0531270 | Msa1069430 | 0.800965 | 1.125081e-48 | -8.615850e-47 |
| Msa0549940 | Msa1069430 | 0.809830 | 1.558238e-50 | -8.615850e-47 |
| Msa0581490 | Msa1069430 | 0.810060 | 1.390879e-50 | -8.615850e-47 |
| Msa0967890 | Msa1069430 | 0.806374 | 8.483395e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1069430 | MtrunA17_Chr7g0251441 | 85.000 | 140 | 13 | 3 | 1 | 135 | 1 | 137 | 3.18e-73 | 214 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1069430 | AT5G38060.1 | 86.076 | 79 | 11 | 0 | 57 | 135 | 55 | 133 | 7.28e-49 | 153 |
| Msa1069430 | AT5G38060.2 | 73.418 | 79 | 9 | 1 | 57 | 135 | 55 | 121 | 2.31e-37 | 124 |
Find 51 sgRNAs with CRISPR-Local
Find 187 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGATTTCATACTGCCCATTT+TGG | 0.189700 | 7_2:-65028417 | Msa1069430:CDS |
| GAAAGTGAACCACAGATTTA+TGG | 0.230709 | 7_2:+65026117 | None:intergenic |
| TGAATGGAAAACCAAGTATT+TGG | 0.234254 | 7_2:+65025957 | None:intergenic |
| TAATTATGAGACTAAAATTA+AGG | 0.268136 | 7_2:-65025889 | Msa1069430:three_prime_UTR |
| GGTTGAGTTGAGGGTCAAAT+TGG | 0.278055 | 7_2:+65028454 | None:intergenic |
| CAAGTGGGGTACCTCCAAAA+TGG | 0.326039 | 7_2:+65028403 | None:intergenic |
| GCCAGAGCCAGGAGTGTTCA+TGG | 0.356277 | 7_2:+65026238 | None:intergenic |
| TGCTCCAATTCCCACCTATT+CGG | 0.370455 | 7_2:-65028542 | Msa1069430:CDS |
| CTAAAATTAAGGAAATTATA+TGG | 0.384185 | 7_2:-65025878 | Msa1069430:three_prime_UTR |
| GTTGAGTTGAGGGTCAAATT+GGG | 0.401053 | 7_2:+65028455 | None:intergenic |
| AGTTTGAGAGTGTGCATGAA+GGG | 0.401454 | 7_2:-65026265 | Msa1069430:CDS |
| ATTTGAGATTGAAAAGCAAA+AGG | 0.417013 | 7_2:+65028591 | None:intergenic |
| CTGGCAAAGTTCTTCAGTAT+TGG | 0.418499 | 7_2:-65026220 | Msa1069430:CDS |
| CAAGAGGGTGGTTGAGTTGA+GGG | 0.421241 | 7_2:+65028445 | None:intergenic |
| TTTGAGATTGAAAAGCAAAA+GGG | 0.427124 | 7_2:+65028592 | None:intergenic |
| AGTTCTGAGGTTGATGCTAC+TGG | 0.432541 | 7_2:+65028494 | None:intergenic |
| TGTTGCTCAGTCCAAATACT+TGG | 0.444024 | 7_2:-65025968 | Msa1069430:three_prime_UTR |
| AACACCGAATAGGTGGGAAT+TGG | 0.447749 | 7_2:+65028538 | None:intergenic |
| TCTTGTTATCTCTGTTCCCA+TGG | 0.452422 | 7_2:-65028667 | Msa1069430:exon |
| CTTCAGTATTGGCACTGTTG+TGG | 0.459406 | 7_2:-65026209 | Msa1069430:CDS |
| ACCATGAACACTCCTGGCTC+TGG | 0.463937 | 7_2:-65026239 | Msa1069430:CDS |
| CAAGTGTGAGCAATTTATGT+TGG | 0.464095 | 7_2:+65028563 | None:intergenic |
| ACCGAGATCAAATGGATCTT+CGG | 0.464937 | 7_2:+65026184 | None:intergenic |
| AAGTGTGAGCAATTTATGTT+GGG | 0.472239 | 7_2:+65028564 | None:intergenic |
| GCGGTGCAACCGAGATCAAA+TGG | 0.473215 | 7_2:+65026176 | None:intergenic |
| TGAAGAACTTTGCCAGAGCC+AGG | 0.482219 | 7_2:+65026227 | None:intergenic |
| TCAATGGAGCAGGCCATGAA+TGG | 0.490113 | 7_2:+65025941 | None:intergenic |
| AAGTGGGGTACCTCCAAAAT+GGG | 0.496242 | 7_2:+65028404 | None:intergenic |
| TCTAAATCAGCCATCATATG+AGG | 0.498868 | 7_2:+65026142 | None:intergenic |
| GCTCCTCACTCCTCATATGA+TGG | 0.504286 | 7_2:-65026152 | Msa1069430:CDS |
| TGCAGTTCTTGCAAGTTCTG+AGG | 0.514501 | 7_2:+65028481 | None:intergenic |
| GAAGTTGAGGAACACCGAAT+AGG | 0.514958 | 7_2:+65028528 | None:intergenic |
| AAGTTTGAGAGTGTGCATGA+AGG | 0.529792 | 7_2:-65026266 | Msa1069430:CDS |
| TCCGAAGATCCATTTGATCT+CGG | 0.533731 | 7_2:-65026185 | Msa1069430:CDS |
| GCAAGAGGGTGGTTGAGTTG+AGG | 0.539179 | 7_2:+65028444 | None:intergenic |
| TTGAGATTGAAAAGCAAAAG+GGG | 0.541761 | 7_2:+65028593 | None:intergenic |
| GTGGTTCACTTTCGCTGTTG+AGG | 0.547059 | 7_2:-65026107 | Msa1069430:three_prime_UTR |
| GTGAGAAAACATTAGAGCCA+TGG | 0.553787 | 7_2:+65028650 | None:intergenic |
| GTTGAGGAACACCGAATAGG+TGG | 0.554232 | 7_2:+65028531 | None:intergenic |
| TGAGAAAACATTAGAGCCAT+GGG | 0.558269 | 7_2:+65028651 | None:intergenic |
| TTGTTGCAATTAAGATGAAG+AGG | 0.560786 | 7_2:+65028618 | None:intergenic |
| GTTTGAGAGTGTGCATGAAG+GGG | 0.579414 | 7_2:-65026264 | Msa1069430:CDS |
| TTGCAATTAAGATGAAGAGG+AGG | 0.605087 | 7_2:+65028621 | None:intergenic |
| ATTTAGATGCCATAAATCTG+TGG | 0.615225 | 7_2:-65026126 | Msa1069430:three_prime_UTR |
| GTATGAAATCGACAAGCAAG+AGG | 0.638478 | 7_2:+65028429 | None:intergenic |
| TTTGAGAGTGTGCATGAAGG+GGG | 0.644148 | 7_2:-65026263 | Msa1069430:CDS |
| TTGAGGAACACCGAATAGGT+GGG | 0.650195 | 7_2:+65028532 | None:intergenic |
| ATATGAGGAGTGAGGAGCAG+CGG | 0.661121 | 7_2:+65026157 | None:intergenic |
| GAAATCGACAAGCAAGAGGG+TGG | 0.667295 | 7_2:+65028433 | None:intergenic |
| CAGCCATCATATGAGGAGTG+AGG | 0.672668 | 7_2:+65026149 | None:intergenic |
| TATGAAATCGACAAGCAAGA+GGG | 0.673289 | 7_2:+65028430 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTATAAAGCTTAGTTTATA+AGG | - | chr7_2:65026252-65026271 | Msa1069430:CDS | 15.0% |
| !! | TGATTTATGATAGAATATTA+TGG | + | chr7_2:65027900-65027919 | None:intergenic | 15.0% |
| !!! | ATTATAAAAGTTTTTCACAT+TGG | + | chr7_2:65028652-65028671 | None:intergenic | 15.0% |
| !! | TAATTATGAGACTAAAATTA+AGG | - | chr7_2:65028668-65028687 | Msa1069430:exon | 15.0% |
| !! | CTAAAATTAAGGAAATTATA+TGG | - | chr7_2:65028679-65028698 | Msa1069430:five_prime_UTR | 15.0% |
| !!! | GTGATATTAATTTGAGAAAA+TGG | - | chr7_2:65026338-65026357 | Msa1069430:intron | 20.0% |
| !! | ATGAAGAAAGTTAACAAAAA+TGG | + | chr7_2:65026769-65026788 | None:intergenic | 20.0% |
| !!! | ATTTGAAATTTATTGTGCAT+CGG | - | chr7_2:65026820-65026839 | Msa1069430:intron | 20.0% |
| !! | AATAGCTTTCATCATTATAT+AGG | - | chr7_2:65027205-65027224 | Msa1069430:intron | 20.0% |
| !! | TTTAAGAATACTCGATTAAT+TGG | - | chr7_2:65027249-65027268 | Msa1069430:intron | 20.0% |
| !! | CTTTATAGAAATCAATGTTA+TGG | + | chr7_2:65027679-65027698 | None:intergenic | 20.0% |
| !! | AAATTGAAACTATTACCAAA+AGG | + | chr7_2:65028135-65028154 | None:intergenic | 20.0% |
| !!! | TTTTCAGAAACTATTGAATA+AGG | + | chr7_2:65028519-65028538 | None:intergenic | 20.0% |
| !! | TTTGAGATTGAAAAGCAAAA+GGG | + | chr7_2:65025968-65025987 | None:intergenic | 25.0% |
| !! | ATTTGAGATTGAAAAGCAAA+AGG | + | chr7_2:65025969-65025988 | None:intergenic | 25.0% |
| ! | GTACATTAGACTTAGTATAA+CGG | + | chr7_2:65026650-65026669 | None:intergenic | 25.0% |
| ! | TGGTGTGAAAATGATAAAAA+AGG | - | chr7_2:65026683-65026702 | Msa1069430:intron | 25.0% |
| ! | GGTGTGAAAATGATAAAAAA+GGG | - | chr7_2:65026684-65026703 | Msa1069430:intron | 25.0% |
| ! | GTGTGAAAATGATAAAAAAG+GGG | - | chr7_2:65026685-65026704 | Msa1069430:intron | 25.0% |
| ! | TGTGAAAATGATAAAAAAGG+GGG | - | chr7_2:65026686-65026705 | Msa1069430:intron | 25.0% |
| ! | TTTCAAATATCAAATACTGC+AGG | + | chr7_2:65026808-65026827 | None:intergenic | 25.0% |
| !!! | ATTTGTGGTAGTTTTGAAAA+GGG | + | chr7_2:65027122-65027141 | None:intergenic | 25.0% |
| ! | TATAAAGCTGAAGTTAACAA+AGG | - | chr7_2:65027692-65027711 | Msa1069430:intron | 25.0% |
| ! | TATGATAGAATATTATGGTC+TGG | + | chr7_2:65027895-65027914 | None:intergenic | 25.0% |
| ! | AATAAAAACATAGAGGTCAA+TGG | + | chr7_2:65027937-65027956 | None:intergenic | 25.0% |
| !!! | GACCTCTATGTTTTTATTAA+CGG | - | chr7_2:65027939-65027958 | Msa1069430:intron | 25.0% |
| !! | AATTTTCACGAAACAGATTT+TGG | - | chr7_2:65027994-65028013 | Msa1069430:intron | 25.0% |
| !! | ATTTTCACGAAACAGATTTT+GGG | - | chr7_2:65027995-65028014 | Msa1069430:intron | 25.0% |
| ! | AACTTTCATCAATGCAATAT+TGG | + | chr7_2:65028161-65028180 | None:intergenic | 25.0% |
| TTGTTGCAATTAAGATGAAG+AGG | + | chr7_2:65025942-65025961 | None:intergenic | 30.0% | |
| TTGAGATTGAAAAGCAAAAG+GGG | + | chr7_2:65025967-65025986 | None:intergenic | 30.0% | |
| AAGTGTGAGCAATTTATGTT+GGG | + | chr7_2:65025996-65026015 | None:intergenic | 30.0% | |
| ATGCATAAGAAAAAGCAAGT+GGG | + | chr7_2:65026172-65026191 | None:intergenic | 30.0% | |
| AATGCATAAGAAAAAGCAAG+TGG | + | chr7_2:65026173-65026192 | None:intergenic | 30.0% | |
| GTGAAAATGATAAAAAAGGG+GGG | - | chr7_2:65026687-65026706 | Msa1069430:intron | 30.0% | |
| TGAAAATGATAAAAAAGGGG+GGG | - | chr7_2:65026688-65026707 | Msa1069430:intron | 30.0% | |
| AGTTAACAAAAATGGCATAC+AGG | + | chr7_2:65026761-65026780 | None:intergenic | 30.0% | |
| TTACAAAGCAAGCGTAAATA+TGG | - | chr7_2:65026873-65026892 | Msa1069430:intron | 30.0% | |
| TACAAAGCAAGCGTAAATAT+GGG | - | chr7_2:65026874-65026893 | Msa1069430:intron | 30.0% | |
| !!! | GATTTGTGGTAGTTTTGAAA+AGG | + | chr7_2:65027123-65027142 | None:intergenic | 30.0% |
| TAACTTTCTTCTTGGAGATT+GGG | - | chr7_2:65027160-65027179 | Msa1069430:intron | 30.0% | |
| !!! | ATATGATGCCTTTTTTACTC+AGG | - | chr7_2:65027309-65027328 | Msa1069430:intron | 30.0% |
| TACACACTACTTTAATTCTG+CGG | - | chr7_2:65027426-65027445 | Msa1069430:intron | 30.0% | |
| !! | AATCTTATATAGAGCGTTGT+AGG | - | chr7_2:65027464-65027483 | Msa1069430:intron | 30.0% |
| !! | ATCTTATATAGAGCGTTGTA+GGG | - | chr7_2:65027465-65027484 | Msa1069430:intron | 30.0% |
| GACTTGTGAACATTTATATG+AGG | - | chr7_2:65027536-65027555 | Msa1069430:intron | 30.0% | |
| AACTTAAGTGTGTAATCACA+AGG | + | chr7_2:65027597-65027616 | None:intergenic | 30.0% | |
| TGTGAAATGATGCAATTAGA+AGG | - | chr7_2:65027743-65027762 | Msa1069430:intron | 30.0% | |
| GTAGAGAAACTAAATCTTGT+TGG | - | chr7_2:65027779-65027798 | Msa1069430:intron | 30.0% | |
| AAATCTTGTTGGATCCATAT+TGG | - | chr7_2:65027790-65027809 | Msa1069430:intron | 30.0% | |
| ! | GTCTACATTTTGTACCAATA+TGG | + | chr7_2:65027807-65027826 | None:intergenic | 30.0% |
| TGGTTGCAAAATTCATATGA+TGG | + | chr7_2:65027829-65027848 | None:intergenic | 30.0% | |
| TGCCGTTAATAAAAACATAG+AGG | + | chr7_2:65027944-65027963 | None:intergenic | 30.0% | |
| CGTGAAAATTCACAAACAAA+AGG | + | chr7_2:65027984-65028003 | None:intergenic | 30.0% | |
| ! | TGCTTCTGATGTATTTGTTA+TGG | - | chr7_2:65028086-65028105 | Msa1069430:intron | 30.0% |
| ATTTAGATGCCATAAATCTG+TGG | - | chr7_2:65028431-65028450 | Msa1069430:CDS | 30.0% | |
| TGAATGGAAAACCAAGTATT+TGG | + | chr7_2:65028603-65028622 | None:intergenic | 30.0% | |
| !! | AATACTTGGTTTTCCATTCA+TGG | - | chr7_2:65028603-65028622 | Msa1069430:CDS | 30.0% |
| TGAGAAAACATTAGAGCCAT+GGG | + | chr7_2:65025909-65025928 | None:intergenic | 35.0% | |
| TTGCAATTAAGATGAAGAGG+AGG | + | chr7_2:65025939-65025958 | None:intergenic | 35.0% | |
| CAAGTGTGAGCAATTTATGT+TGG | + | chr7_2:65025997-65026016 | None:intergenic | 35.0% | |
| TATGAAATCGACAAGCAAGA+GGG | + | chr7_2:65026130-65026149 | None:intergenic | 35.0% | |
| TGCATAAGAAAAAGCAAGTG+GGG | + | chr7_2:65026171-65026190 | None:intergenic | 35.0% | |
| ACACCGATACTTCAAATTGA+AGG | + | chr7_2:65026451-65026470 | None:intergenic | 35.0% | |
| CCTTTGACTACTCAAATGTA+AGG | + | chr7_2:65026537-65026556 | None:intergenic | 35.0% | |
| CCTTACATTTGAGTAGTCAA+AGG | - | chr7_2:65026534-65026553 | Msa1069430:intron | 35.0% | |
| AATGTACGTCGTTGAACTTA+TGG | - | chr7_2:65026663-65026682 | Msa1069430:intron | 35.0% | |
| GAAAATGATAAAAAAGGGGG+GGG | - | chr7_2:65026689-65026708 | Msa1069430:intron | 35.0% | |
| AAAATGATAAAAAAGGGGGG+GGG | - | chr7_2:65026690-65026709 | Msa1069430:intron | 35.0% | |
| ACTGCTGAATTACCAAGAAA+CGG | - | chr7_2:65026726-65026745 | Msa1069430:intron | 35.0% | |
| TACTTTCAAACCTGACATGA+AGG | - | chr7_2:65026904-65026923 | Msa1069430:intron | 35.0% | |
| ! | GCAGCTTTAATGTTCTATCT+AGG | - | chr7_2:65026955-65026974 | Msa1069430:intron | 35.0% |
| TCTTGAAGTAGTGATAGTTG+AGG | - | chr7_2:65027019-65027038 | Msa1069430:intron | 35.0% | |
| CTAACTTTCTTCTTGGAGAT+TGG | - | chr7_2:65027159-65027178 | Msa1069430:intron | 35.0% | |
| TAATGCCTCCTGAGTAAAAA+AGG | + | chr7_2:65027320-65027339 | None:intergenic | 35.0% | |
| AATACATGAGTAACATCCAG+AGG | + | chr7_2:65027349-65027368 | None:intergenic | 35.0% | |
| CTGGATGTTACTCATGTATT+TGG | - | chr7_2:65027349-65027368 | Msa1069430:intron | 35.0% | |
| ACACACTACTTTAATTCTGC+GGG | - | chr7_2:65027427-65027446 | Msa1069430:intron | 35.0% | |
| GTGTAATCACAAGGTCTATT+AGG | + | chr7_2:65027588-65027607 | None:intergenic | 35.0% | |
| AACAAAGGATCTACTATGAC+AGG | - | chr7_2:65027707-65027726 | Msa1069430:intron | 35.0% | |
| CAACCAAACATAAACCAACT+AGG | - | chr7_2:65027843-65027862 | Msa1069430:intron | 35.0% | |
| CAAACATAAACCAACTAGGT+GGG | - | chr7_2:65027847-65027866 | Msa1069430:intron | 35.0% | |
| ! | CAAAAGTTTAGTTCCGAGTT+TGG | - | chr7_2:65028020-65028039 | Msa1069430:intron | 35.0% |
| TGGTTATTGTCGTGACATTT+AGG | - | chr7_2:65028106-65028125 | Msa1069430:intron | 35.0% | |
| !! | GTGACATTTAGGATTCCTTT+TGG | - | chr7_2:65028117-65028136 | Msa1069430:intron | 35.0% |
| ! | TTTCTATTTTCCTCAACCAC+AGG | - | chr7_2:65028255-65028274 | Msa1069430:intron | 35.0% |
| TCTAAATCAGCCATCATATG+AGG | + | chr7_2:65028418-65028437 | None:intergenic | 35.0% | |
| GAAAGTGAACCACAGATTTA+TGG | + | chr7_2:65028443-65028462 | None:intergenic | 35.0% | |
| ! | TCTTGTTATCTCTGTTCCCA+TGG | - | chr7_2:65025890-65025909 | Msa1069430:three_prime_UTR | 40.0% |
| GTGAGAAAACATTAGAGCCA+TGG | + | chr7_2:65025910-65025929 | None:intergenic | 40.0% | |
| !!! | GGTTTTGTTGTTGGAAGTTG+AGG | + | chr7_2:65026045-65026064 | None:intergenic | 40.0% |
| !!! | GATGCTACTGGTTTTGTTGT+TGG | + | chr7_2:65026054-65026073 | None:intergenic | 40.0% |
| !! | GTTGAGTTGAGGGTCAAATT+GGG | + | chr7_2:65026105-65026124 | None:intergenic | 40.0% |
| GTATGAAATCGACAAGCAAG+AGG | + | chr7_2:65026131-65026150 | None:intergenic | 40.0% | |
| ! | CGATTTCATACTGCCCATTT+TGG | - | chr7_2:65026140-65026159 | Msa1069430:exon | 40.0% |
| ! | TTTCATACTGCCCATTTTGG+AGG | - | chr7_2:65026143-65026162 | Msa1069430:exon | 40.0% |
| GCATTAAGCAGTACACATGT+TGG | - | chr7_2:65026377-65026396 | Msa1069430:intron | 40.0% | |
| ! | GCGCCTTCAATTTGAAGTAT+CGG | - | chr7_2:65026445-65026464 | Msa1069430:intron | 40.0% |
| TGAAAGTCAAGTGTGCTGAA+TGG | - | chr7_2:65026501-65026520 | Msa1069430:intron | 40.0% | |
| AAATGATAAAAAAGGGGGGG+GGG | - | chr7_2:65026691-65026710 | Msa1069430:intron | 40.0% | |
| GTTCAGTTTACTTTCAGACC+TGG | - | chr7_2:65026849-65026868 | Msa1069430:intron | 40.0% | |
| TTCAAACCTGACATGAAGGA+AGG | - | chr7_2:65026908-65026927 | Msa1069430:intron | 40.0% | |
| TGTACGAGGTTCACAATGTA+CGG | - | chr7_2:65026933-65026952 | Msa1069430:intron | 40.0% | |
| TAAACAATGCACTGAGTGGA+AGG | + | chr7_2:65027067-65027086 | None:intergenic | 40.0% | |
| GAGATAAACAATGCACTGAG+TGG | + | chr7_2:65027071-65027090 | None:intergenic | 40.0% | |
| TATCTCAACCATGTTAGCCA+TGG | - | chr7_2:65027085-65027104 | Msa1069430:intron | 40.0% | |
| AAAGGGTTAGAAGAAAGCCA+TGG | + | chr7_2:65027105-65027124 | None:intergenic | 40.0% | |
| AGAAGAAAGTTAGCGAGGAA+GGG | + | chr7_2:65027152-65027171 | None:intergenic | 40.0% | |
| AAGAAGAAAGTTAGCGAGGA+AGG | + | chr7_2:65027153-65027172 | None:intergenic | 40.0% | |
| TTCCTCGCTAACTTTCTTCT+TGG | - | chr7_2:65027152-65027171 | Msa1069430:intron | 40.0% | |
| GGTTCTTGAGTCTTGATTAG+TGG | - | chr7_2:65027181-65027200 | Msa1069430:intron | 40.0% | |
| !!! | TGATGCCTTTTTTACTCAGG+AGG | - | chr7_2:65027312-65027331 | Msa1069430:intron | 40.0% |
| CACACTACTTTAATTCTGCG+GGG | - | chr7_2:65027428-65027447 | Msa1069430:intron | 40.0% | |
| ! | ATTAGAAGGCACGTAGGTTT+AGG | - | chr7_2:65027757-65027776 | Msa1069430:intron | 40.0% |
| ! | CCACCTAGTTGGTTTATGTT+TGG | + | chr7_2:65027849-65027868 | None:intergenic | 40.0% |
| CCAAACATAAACCAACTAGG+TGG | - | chr7_2:65027846-65027865 | Msa1069430:intron | 40.0% | |
| ! | AAGTTTAGTTCCGAGTTTGG+AGG | - | chr7_2:65028023-65028042 | Msa1069430:intron | 40.0% |
| TTGGAGGAAAACTTGGGTAA+TGG | - | chr7_2:65028039-65028058 | Msa1069430:intron | 40.0% | |
| CTAGCTATCTAGACACAAGT+TGG | - | chr7_2:65028217-65028236 | Msa1069430:intron | 40.0% | |
| CTTTCTCTTAGTTTCTCCTG+TGG | + | chr7_2:65028274-65028293 | None:intergenic | 40.0% | |
| ! | AAGTTTGAGAGTGTGCATGA+AGG | - | chr7_2:65028291-65028310 | Msa1069430:intron | 40.0% |
| ! | AGTTTGAGAGTGTGCATGAA+GGG | - | chr7_2:65028292-65028311 | Msa1069430:intron | 40.0% |
| CTGGCAAAGTTCTTCAGTAT+TGG | - | chr7_2:65028337-65028356 | Msa1069430:intron | 40.0% | |
| TCCGAAGATCCATTTGATCT+CGG | - | chr7_2:65028372-65028391 | Msa1069430:intron | 40.0% | |
| ACCGAGATCAAATGGATCTT+CGG | + | chr7_2:65028376-65028395 | None:intergenic | 40.0% | |
| TGTTGCTCAGTCCAAATACT+TGG | - | chr7_2:65028589-65028608 | Msa1069430:CDS | 40.0% | |
| ! | CATTGGCATGCTTTTGTCAA+TGG | + | chr7_2:65028635-65028654 | None:intergenic | 40.0% |
| TGCTCCAATTCCCACCTATT+CGG | - | chr7_2:65026015-65026034 | Msa1069430:three_prime_UTR | 45.0% | |
| AACACCGAATAGGTGGGAAT+TGG | + | chr7_2:65026022-65026041 | None:intergenic | 45.0% | |
| TTGAGGAACACCGAATAGGT+GGG | + | chr7_2:65026028-65026047 | None:intergenic | 45.0% | |
| GAAGTTGAGGAACACCGAAT+AGG | + | chr7_2:65026032-65026051 | None:intergenic | 45.0% | |
| !! | AGTTCTGAGGTTGATGCTAC+TGG | + | chr7_2:65026066-65026085 | None:intergenic | 45.0% |
| TGCAGTTCTTGCAAGTTCTG+AGG | + | chr7_2:65026079-65026098 | None:intergenic | 45.0% | |
| !! | GGTTGAGTTGAGGGTCAAAT+TGG | + | chr7_2:65026106-65026125 | None:intergenic | 45.0% |
| ! | AAGTGGGGTACCTCCAAAAT+GGG | + | chr7_2:65026156-65026175 | None:intergenic | 45.0% |
| !! | CACATGTTGGTGTCAAGTGT+CGG | - | chr7_2:65026390-65026409 | Msa1069430:intron | 45.0% |
| ! | CTTCAAATTGAAGGCGCGTT+CGG | + | chr7_2:65026442-65026461 | None:intergenic | 45.0% |
| GTCAAGTGTGCTGAATGGTT+TGG | - | chr7_2:65026506-65026525 | Msa1069430:intron | 45.0% | |
| AATGATAAAAAAGGGGGGGG+GGG | - | chr7_2:65026692-65026711 | Msa1069430:intron | 45.0% | |
| TTACGCTTGCTTTGTAAGCC+AGG | + | chr7_2:65026870-65026889 | None:intergenic | 45.0% | |
| TACAGTCCTTCCTTCATGTC+AGG | + | chr7_2:65026917-65026936 | None:intergenic | 45.0% | |
| AGTGATAGTTGAGGCTTGAG+AGG | - | chr7_2:65027028-65027047 | Msa1069430:intron | 45.0% | |
| GAAGAAAGCCATGGCTAACA+TGG | + | chr7_2:65027096-65027115 | None:intergenic | 45.0% | |
| !! | AGGAAGGGCATTGTGATTTG+TGG | + | chr7_2:65027137-65027156 | None:intergenic | 45.0% |
| CTCCAAGAAGAAAGTTAGCG+AGG | + | chr7_2:65027157-65027176 | None:intergenic | 45.0% | |
| !! | GGAGGCATTAACATAACCTC+TGG | - | chr7_2:65027330-65027349 | Msa1069430:intron | 45.0% |
| CTACTTTAATTCTGCGGGGA+AGG | - | chr7_2:65027432-65027451 | Msa1069430:intron | 45.0% | |
| TTTAATTCTGCGGGGAAGGA+GGG | - | chr7_2:65027436-65027455 | Msa1069430:intron | 45.0% | |
| !! | ATATAGAGCGTTGTAGGGCA+AGG | - | chr7_2:65027470-65027489 | Msa1069430:intron | 45.0% |
| ! | GATGCAATTAGAAGGCACGT+AGG | - | chr7_2:65027751-65027770 | Msa1069430:intron | 45.0% |
| TCCGAGTTTGGAGGAAAACT+TGG | - | chr7_2:65028032-65028051 | Msa1069430:intron | 45.0% | |
| ! | CCCAAGTTTTCCTCCAAACT+CGG | + | chr7_2:65028036-65028055 | None:intergenic | 45.0% |
| CCGAGTTTGGAGGAAAACTT+GGG | - | chr7_2:65028033-65028052 | Msa1069430:intron | 45.0% | |
| ! | GCTATCTAGACACAAGTTGG+CGG | - | chr7_2:65028220-65028239 | Msa1069430:intron | 45.0% |
| CTTAGTTTCTCCTGTGGTTG+AGG | + | chr7_2:65028268-65028287 | None:intergenic | 45.0% | |
| ! | GTTTGAGAGTGTGCATGAAG+GGG | - | chr7_2:65028293-65028312 | Msa1069430:intron | 45.0% |
| ! | TTTGAGAGTGTGCATGAAGG+GGG | - | chr7_2:65028294-65028313 | Msa1069430:intron | 45.0% |
| !! | CTTCAGTATTGGCACTGTTG+TGG | - | chr7_2:65028348-65028367 | Msa1069430:intron | 45.0% |
| ! | CATGCTTTTGTCAATGGAGC+AGG | + | chr7_2:65028629-65028648 | None:intergenic | 45.0% |
| GTTGAGGAACACCGAATAGG+TGG | + | chr7_2:65026029-65026048 | None:intergenic | 50.0% | |
| !! | CAAGAGGGTGGTTGAGTTGA+GGG | + | chr7_2:65026115-65026134 | None:intergenic | 50.0% |
| GAAATCGACAAGCAAGAGGG+TGG | + | chr7_2:65026127-65026146 | None:intergenic | 50.0% | |
| ! | CAAGTGGGGTACCTCCAAAA+TGG | + | chr7_2:65026157-65026176 | None:intergenic | 50.0% |
| ATGATAAAAAAGGGGGGGGG+GGG | - | chr7_2:65026693-65026712 | Msa1069430:intron | 50.0% | |
| TTACCAAGAAACGGCTGTCG+TGG | - | chr7_2:65026735-65026754 | Msa1069430:intron | 50.0% | |
| CATGAAGGAAGGACTGTACG+AGG | - | chr7_2:65026919-65026938 | Msa1069430:intron | 50.0% | |
| CTTTAATTCTGCGGGGAAGG+AGG | - | chr7_2:65027435-65027454 | Msa1069430:intron | 50.0% | |
| AGTTGACTGACCCACCTAGT+TGG | + | chr7_2:65027860-65027879 | None:intergenic | 50.0% | |
| AGGTGGGTCAGTCAACTACA+TGG | - | chr7_2:65027863-65027882 | Msa1069430:intron | 50.0% | |
| TGAAGAACTTTGCCAGAGCC+AGG | + | chr7_2:65028333-65028352 | None:intergenic | 50.0% | |
| ATATGAGGAGTGAGGAGCAG+CGG | + | chr7_2:65028403-65028422 | None:intergenic | 50.0% | |
| GCTCCTCACTCCTCATATGA+TGG | - | chr7_2:65028405-65028424 | Msa1069430:intron | 50.0% | |
| CAGCCATCATATGAGGAGTG+AGG | + | chr7_2:65028411-65028430 | None:intergenic | 50.0% | |
| GTGGTTCACTTTCGCTGTTG+AGG | - | chr7_2:65028450-65028469 | Msa1069430:CDS | 50.0% | |
| TCAATGGAGCAGGCCATGAA+TGG | + | chr7_2:65028619-65028638 | None:intergenic | 50.0% | |
| ! | GCAAGAGGGTGGTTGAGTTG+AGG | + | chr7_2:65026116-65026135 | None:intergenic | 55.0% |
| TGATAAAAAAGGGGGGGGGG+GGG | - | chr7_2:65026694-65026713 | Msa1069430:intron | 55.0% | |
| ACCATGAACACTCCTGGCTC+TGG | - | chr7_2:65028318-65028337 | Msa1069430:intron | 55.0% | |
| GCGGTGCAACCGAGATCAAA+TGG | + | chr7_2:65028384-65028403 | None:intergenic | 55.0% | |
| GATAAAAAAGGGGGGGGGGG+GGG | - | chr7_2:65026695-65026714 | Msa1069430:intron | 60.0% | |
| ATAAAAAAGGGGGGGGGGGG+GGG | - | chr7_2:65026696-65026715 | Msa1069430:intron | 60.0% | |
| AGGCCACGACAGCCGTTTCT+TGG | + | chr7_2:65026741-65026760 | None:intergenic | 60.0% | |
| GGGGGAACCATGAACACTCC+TGG | - | chr7_2:65028312-65028331 | Msa1069430:intron | 60.0% | |
| !! | GCCAGAGCCAGGAGTGTTCA+TGG | + | chr7_2:65028322-65028341 | None:intergenic | 60.0% |
| TAAAAAAGGGGGGGGGGGGG+GGG | - | chr7_2:65026697-65026716 | Msa1069430:intron | 65.0% | |
| AAAAAAGGGGGGGGGGGGGG+GGG | - | chr7_2:65026698-65026717 | Msa1069430:intron | 70.0% | |
| AAAAAGGGGGGGGGGGGGGG+GGG | - | chr7_2:65026699-65026718 | Msa1069430:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 65025852 | 65028727 | 65025852 | ID=Msa1069430;Name=Msa1069430 |
| chr7_2 | mRNA | 65025852 | 65028727 | 65025852 | ID=Msa1069430-mRNA-1;Parent=Msa1069430;Name=Msa1069430-mRNA-1;_AED=0.02;_eAED=0.02;_QI=57|1|1|1|1|1|2|296|136 |
| chr7_2 | exon | 65025852 | 65026302 | 65025852 | ID=Msa1069430-mRNA-1:exon:13642;Parent=Msa1069430-mRNA-1 |
| chr7_2 | exon | 65028415 | 65028727 | 65028415 | ID=Msa1069430-mRNA-1:exon:13641;Parent=Msa1069430-mRNA-1 |
| chr7_2 | five_prime_UTR | 65028671 | 65028727 | 65028671 | ID=Msa1069430-mRNA-1:five_prime_utr;Parent=Msa1069430-mRNA-1 |
| chr7_2 | CDS | 65028415 | 65028670 | 65028415 | ID=Msa1069430-mRNA-1:cds;Parent=Msa1069430-mRNA-1 |
| chr7_2 | CDS | 65026148 | 65026302 | 65026148 | ID=Msa1069430-mRNA-1:cds;Parent=Msa1069430-mRNA-1 |
| chr7_2 | three_prime_UTR | 65025852 | 65026147 | 65025852 | ID=Msa1069430-mRNA-1:three_prime_utr;Parent=Msa1069430-mRNA-1 |
| Gene Sequence |
| Protein sequence |
