AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0707270


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0707270 MtrunA17_Chr8g0388411 95.714 140 6 0 1 140 1 140 3.93e-99 281
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0707270 AT5G42070.1 78.571 70 15 0 65 134 69 138 4.04e-36 122

Find 65 sgRNAs with CRISPR-Local

Find 288 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATCAATGTATTCGTAAAAT+AGG 0.190213 4_4:-80505943 Msa0707270:three_prime_UTR
TGTCCTGGATTTGTGGCTTC+TGG 0.277176 4_4:-80507179 Msa0707270:CDS
GGTGGTATTGCAACAGTTCC+TGG 0.294401 4_4:-80507236 Msa0707270:CDS
CATGGCCTGTATGCCTTTAT+AGG 0.312442 4_4:+80507200 None:intergenic
CGCACCCTGCCCGAGTAAAA+AGG 0.330764 4_4:-80507732 Msa0707270:five_prime_UTR
CTTTGGCTGGTGGCCTATAA+AGG 0.340571 4_4:-80507213 Msa0707270:CDS
AAAATATGCTGTAAGGATTC+TGG 0.343912 4_4:-80505980 Msa0707270:three_prime_UTR
ATTGCAACAGTTCCTGGCTT+TGG 0.355448 4_4:-80507230 Msa0707270:CDS
CAGGCCATGTCCTGGATTTG+TGG 0.362074 4_4:-80507186 Msa0707270:CDS
ATCAATGTATTCGTAAAATA+GGG 0.371971 4_4:-80505942 Msa0707270:three_prime_UTR
TGCCCCTCTTCCTTAACCCT+GGG 0.391184 4_4:+80506008 None:intergenic
TTGCCCCTCTTCCTTAACCC+TGG 0.391273 4_4:+80506007 None:intergenic
CAACAGTTCCTGGCTTTGGC+TGG 0.392114 4_4:-80507226 Msa0707270:CDS
AAAGTAATGTTGGAAGTTAA+CGG 0.425034 4_4:+80505842 None:intergenic
CAGTTCCTGGCTTTGGCTGG+TGG 0.448784 4_4:-80507223 Msa0707270:CDS
GCAGAAGAAATGAGTGAAGT+TGG 0.456714 4_4:+80507454 None:intergenic
CAATGGTGAGGGTAGGATGC+AGG 0.456901 4_4:-80507258 Msa0707270:CDS
GGAAGTTAACGGCAAGGAAC+CGG 0.465689 4_4:+80505853 None:intergenic
TGACATAAAACCCAGGGTTA+AGG 0.473157 4_4:-80506018 Msa0707270:three_prime_UTR
GAAACAGCAAGTTCATCATC+TGG 0.480522 4_4:+80507430 None:intergenic
GACGAGGTTGTCTCCGGTAG+TGG 0.489301 4_4:-80507125 Msa0707270:CDS
CCACCAGAAGCCACAAATCC+AGG 0.502695 4_4:+80507176 None:intergenic
TGGATGGTACCTCTGTTTAG+TGG 0.503777 4_4:+80507390 None:intergenic
AAGGCATACAGGCCATGTCC+TGG 0.519447 4_4:-80507194 Msa0707270:CDS
TTGTATCATAAAAGTAATGT+TGG 0.520043 4_4:+80505832 None:intergenic
TGCAATGTAATCATCTTATG+TGG 0.525133 4_4:-80505916 Msa0707270:three_prime_UTR
AAAACCCAGGGTTAAGGAAG+AGG 0.530788 4_4:-80506012 Msa0707270:three_prime_UTR
GGAACAAATATCTTAGTAGC+TGG 0.533811 4_4:+80507493 None:intergenic
TGGTGGTAGGTACAGACGAC+AGG 0.534138 4_4:-80507159 Msa0707270:CDS
GATTTGTGGCTTCTGGTGGT+AGG 0.534194 4_4:-80507172 Msa0707270:CDS
GACTTGGAGTCAGTTGCAGT+TGG 0.535101 4_4:+80507089 None:intergenic
ATAGGCCACCAGCCAAAGCC+AGG 0.536722 4_4:+80507218 None:intergenic
TGAAGAGCTAAGTGTTTGCA+AGG 0.537825 4_4:-80506068 Msa0707270:exon
AGCATGGACGAGGTTGTCTC+CGG 0.542240 4_4:-80507131 Msa0707270:CDS
GAAGTTGGAGAGCATAGTGT+GGG 0.545271 4_4:+80507469 None:intergenic
CACCTCAATGAAGCAGTGGC+TGG 0.545479 4_4:+80506039 None:intergenic
GGAAACGAAGAAATTGAGAA+AGG 0.546629 4_4:-80507284 Msa0707270:CDS
AAACCCAGGGTTAAGGAAGA+GGG 0.548593 4_4:-80506011 Msa0707270:three_prime_UTR
TGAAGTTGGAGAGCATAGTG+TGG 0.558341 4_4:+80507468 None:intergenic
CCTGGATTTGTGGCTTCTGG+TGG 0.563457 4_4:-80507176 Msa0707270:CDS
GAAATTGAGAAAGGATGCAA+TGG 0.563789 4_4:-80507275 Msa0707270:CDS
TGATGATAATGTTGAGGTGT+TGG 0.564881 4_4:+80507547 None:intergenic
AAGGATGCAATGGTGAGGGT+AGG 0.574706 4_4:-80507265 Msa0707270:CDS
AATGGTGAGGGTAGGATGCA+GGG 0.575709 4_4:-80507257 Msa0707270:CDS
CAGACGACAGGGACAAAGCA+TGG 0.576125 4_4:-80507147 Msa0707270:CDS
GGTGGCCTATAAAGGCATAC+AGG 0.580795 4_4:-80507205 Msa0707270:CDS
GAGAAAGGATGCAATGGTGA+GGG 0.581838 4_4:-80507269 Msa0707270:CDS
TATAAATTGAAGTAAAAGTG+TGG 0.587372 4_4:-80507626 Msa0707270:five_prime_UTR
TACCAGCCACTGCTTCATTG+AGG 0.593729 4_4:-80506041 Msa0707270:three_prime_UTR
AGACAATAGATACCTTGACT+TGG 0.607021 4_4:+80507073 None:intergenic
ATGTCACCTCAATGAAGCAG+TGG 0.616278 4_4:+80506035 None:intergenic
TGAGAAAGGATGCAATGGTG+AGG 0.617666 4_4:-80507270 Msa0707270:CDS
TTGAGGTGACATAAAACCCA+GGG 0.626355 4_4:-80506024 Msa0707270:three_prime_UTR
GTTGGAGAGCATAGTGTGGG+AGG 0.638611 4_4:+80507472 None:intergenic
AATGTTGGAAGTTAACGGCA+AGG 0.641620 4_4:+80505847 None:intergenic
AACAGCGGTTGCAAAGCATG+TGG 0.642827 4_4:-80507305 Msa0707270:intron
AACCCAGGGTTAAGGAAGAG+GGG 0.643408 4_4:-80506010 Msa0707270:three_prime_UTR
ACAGGGACAAAGCATGGACG+AGG 0.654227 4_4:-80507141 Msa0707270:CDS
CTGCAACTGACTCCAAGTCA+AGG 0.664830 4_4:-80507085 Msa0707270:intron
ATTGAGGTGACATAAAACCC+AGG 0.671779 4_4:-80506025 Msa0707270:three_prime_UTR
TGAACGTGATGATAATGTTG+AGG 0.683199 4_4:+80507541 None:intergenic
GAAGCCACAAATCCAGGACA+TGG 0.686791 4_4:+80507182 None:intergenic
GGTGGTAGGTACAGACGACA+GGG 0.692150 4_4:-80507158 Msa0707270:CDS
CAGAATTCTCCACTAAACAG+AGG 0.708713 4_4:-80507399 Msa0707270:intron
GGTGAGGGTAGGATGCAGGG+TGG 0.740434 4_4:-80507254 Msa0707270:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATAAAAAAATAAAAAATA+GGG + chr4_4:80506653-80506672 None:intergenic 0.0%
!! AAAATAAAAAAATAAAAAAT+AGG + chr4_4:80506654-80506673 None:intergenic 0.0%
!!! TATTTTTTATTTTTTTATTT+TGG - chr4_4:80506653-80506672 Msa0707270:intron 0.0%
!! AAATAAAAAAATAAAAAATA+GGG + chr4_4:80506653-80506672 None:intergenic 0.0%
!! AAAATAAAAAAATAAAAAAT+AGG + chr4_4:80506654-80506673 None:intergenic 0.0%
!!! TATTTTTTATTTTTTTATTT+TGG - chr4_4:80506653-80506672 Msa0707270:intron 0.0%
!!! AAAGATTTTTATTTAATGAA+GGG + chr4_4:80506159-80506178 None:intergenic 10.0%
!!! TAAAGATTTTTATTTAATGA+AGG + chr4_4:80506160-80506179 None:intergenic 10.0%
!! AAGATTTATCTATAAATAAA+TGG + chr4_4:80506501-80506520 None:intergenic 10.0%
!!! ATGATAATAACTTTTTTTTT+TGG - chr4_4:80507211-80507230 Msa0707270:CDS 10.0%
!!! AAAGATTTTTATTTAATGAA+GGG + chr4_4:80506159-80506178 None:intergenic 10.0%
!!! TAAAGATTTTTATTTAATGA+AGG + chr4_4:80506160-80506179 None:intergenic 10.0%
!! AAGATTTATCTATAAATAAA+TGG + chr4_4:80506501-80506520 None:intergenic 10.0%
!!! ATGATAATAACTTTTTTTTT+TGG - chr4_4:80507211-80507230 Msa0707270:CDS 10.0%
!!! TATCCGTAAATATTTTTTAT+CGG - chr4_4:80505853-80505872 Msa0707270:three_prime_UTR 15.0%
!!! AAGATTTTTATTTAATGAAG+GGG + chr4_4:80506158-80506177 None:intergenic 15.0%
!! AATTACTCCTATATAATAAA+AGG + chr4_4:80506939-80506958 None:intergenic 15.0%
!!! TATCCGTAAATATTTTTTAT+CGG - chr4_4:80505853-80505872 Msa0707270:three_prime_UTR 15.0%
!!! AAGATTTTTATTTAATGAAG+GGG + chr4_4:80506158-80506177 None:intergenic 15.0%
!! AATTACTCCTATATAATAAA+AGG + chr4_4:80506939-80506958 None:intergenic 15.0%
!! ACACCGATAAAAAATATTTA+CGG + chr4_4:80505859-80505878 None:intergenic 20.0%
!! TATAAATTGAAGTAAAAGTG+TGG - chr4_4:80505892-80505911 Msa0707270:three_prime_UTR 20.0%
!!! AGATTTTTATTTAATGAAGG+GGG + chr4_4:80506157-80506176 None:intergenic 20.0%
!! TCTATAAATAAATGGTAAAC+TGG + chr4_4:80506493-80506512 None:intergenic 20.0%
!!! ATTTTGTTTATGTTGATAGA+AGG - chr4_4:80506614-80506633 Msa0707270:intron 20.0%
!!! TTTTGTTTATGTTGATAGAA+GGG - chr4_4:80506615-80506634 Msa0707270:intron 20.0%
!! AATTGTGTGAATTGTTATAT+AGG - chr4_4:80507266-80507285 Msa0707270:CDS 20.0%
!! CTAATCAGTATAATATATCA+TGG - chr4_4:80507386-80507405 Msa0707270:intron 20.0%
!! TATCAATGTATTCGTAAAAT+AGG - chr4_4:80507575-80507594 Msa0707270:exon 20.0%
!! ATCAATGTATTCGTAAAATA+GGG - chr4_4:80507576-80507595 Msa0707270:exon 20.0%
!!! TTTTTTTTTTCATTGATCAC+CGG - chr4_4:80507646-80507665 Msa0707270:five_prime_UTR 20.0%
!! TTGTATCATAAAAGTAATGT+TGG + chr4_4:80507689-80507708 None:intergenic 20.0%
!! ACACCGATAAAAAATATTTA+CGG + chr4_4:80505859-80505878 None:intergenic 20.0%
!! TATAAATTGAAGTAAAAGTG+TGG - chr4_4:80505892-80505911 Msa0707270:three_prime_UTR 20.0%
!!! AGATTTTTATTTAATGAAGG+GGG + chr4_4:80506157-80506176 None:intergenic 20.0%
!! TCTATAAATAAATGGTAAAC+TGG + chr4_4:80506493-80506512 None:intergenic 20.0%
!!! ATTTTGTTTATGTTGATAGA+AGG - chr4_4:80506614-80506633 Msa0707270:intron 20.0%
!!! TTTTGTTTATGTTGATAGAA+GGG - chr4_4:80506615-80506634 Msa0707270:intron 20.0%
!! AATTGTGTGAATTGTTATAT+AGG - chr4_4:80507266-80507285 Msa0707270:CDS 20.0%
!! CTAATCAGTATAATATATCA+TGG - chr4_4:80507386-80507405 Msa0707270:intron 20.0%
!! TATCAATGTATTCGTAAAAT+AGG - chr4_4:80507575-80507594 Msa0707270:exon 20.0%
!! ATCAATGTATTCGTAAAATA+GGG - chr4_4:80507576-80507595 Msa0707270:exon 20.0%
!!! TTTTTTTTTTCATTGATCAC+CGG - chr4_4:80507646-80507665 Msa0707270:five_prime_UTR 20.0%
!! TTGTATCATAAAAGTAATGT+TGG + chr4_4:80507689-80507708 None:intergenic 20.0%
!! TCTATTAACTCCTTTTTACT+CGG + chr4_4:80505799-80505818 None:intergenic 25.0%
! TGTACAAACCAAAAAAATCA+TGG - chr4_4:80506002-80506021 Msa0707270:three_prime_UTR 25.0%
!!! CAAATGAGAAGGATTTTAAT+AGG - chr4_4:80506582-80506601 Msa0707270:intron 25.0%
!! TTTGTTTATGTTGATAGAAG+GGG - chr4_4:80506616-80506635 Msa0707270:intron 25.0%
!!! TTTTTTTATTTTGGTTCGCA+AGG - chr4_4:80506662-80506681 Msa0707270:intron 25.0%
!!! TTTTTTATTTTGGTTCGCAA+GGG - chr4_4:80506663-80506682 Msa0707270:intron 25.0%
! AAAGATAAGATCAAGAGTTA+AGG + chr4_4:80506846-80506865 None:intergenic 25.0%
! TTATATAGGAGTAATTCCAT+AGG - chr4_4:80506943-80506962 Msa0707270:intron 25.0%
!!! AGGTGTTATTTAAGATAGAA+AGG + chr4_4:80507118-80507137 None:intergenic 25.0%
! ATAAAGTGAGATGTATTTCA+TGG + chr4_4:80507175-80507194 None:intergenic 25.0%
! TGAATTGTTATATAGGATGA+TGG - chr4_4:80507273-80507292 Msa0707270:CDS 25.0%
!! CTTTTTGTTACTGCAAAATT+TGG + chr4_4:80507414-80507433 None:intergenic 25.0%
!! CAAATTTTGCAGTAACAAAA+AGG - chr4_4:80507412-80507431 Msa0707270:CDS 25.0%
! CAAAAACAAAATATGCTGTA+AGG - chr4_4:80507531-80507550 Msa0707270:CDS 25.0%
! AAAGTAATGTTGGAAGTTAA+CGG + chr4_4:80507679-80507698 None:intergenic 25.0%
!! TCTATTAACTCCTTTTTACT+CGG + chr4_4:80505799-80505818 None:intergenic 25.0%
! TGTACAAACCAAAAAAATCA+TGG - chr4_4:80506002-80506021 Msa0707270:three_prime_UTR 25.0%
!!! CAAATGAGAAGGATTTTAAT+AGG - chr4_4:80506582-80506601 Msa0707270:intron 25.0%
!! TTTGTTTATGTTGATAGAAG+GGG - chr4_4:80506616-80506635 Msa0707270:intron 25.0%
!!! TTTTTTTATTTTGGTTCGCA+AGG - chr4_4:80506662-80506681 Msa0707270:intron 25.0%
!!! TTTTTTATTTTGGTTCGCAA+GGG - chr4_4:80506663-80506682 Msa0707270:intron 25.0%
! AAAGATAAGATCAAGAGTTA+AGG + chr4_4:80506846-80506865 None:intergenic 25.0%
! TTATATAGGAGTAATTCCAT+AGG - chr4_4:80506943-80506962 Msa0707270:intron 25.0%
!!! AGGTGTTATTTAAGATAGAA+AGG + chr4_4:80507118-80507137 None:intergenic 25.0%
! ATAAAGTGAGATGTATTTCA+TGG + chr4_4:80507175-80507194 None:intergenic 25.0%
! TGAATTGTTATATAGGATGA+TGG - chr4_4:80507273-80507292 Msa0707270:CDS 25.0%
!! CTTTTTGTTACTGCAAAATT+TGG + chr4_4:80507414-80507433 None:intergenic 25.0%
!! CAAATTTTGCAGTAACAAAA+AGG - chr4_4:80507412-80507431 Msa0707270:CDS 25.0%
! CAAAAACAAAATATGCTGTA+AGG - chr4_4:80507531-80507550 Msa0707270:CDS 25.0%
! AAAGTAATGTTGGAAGTTAA+CGG + chr4_4:80507679-80507698 None:intergenic 25.0%
! CTATTAACTCCTTTTTACTC+GGG + chr4_4:80505798-80505817 None:intergenic 30.0%
!!! TTTTATCGGTGTTGAACTTT+TGG - chr4_4:80505867-80505886 Msa0707270:three_prime_UTR 30.0%
!!! TTTATCGGTGTTGAACTTTT+GGG - chr4_4:80505868-80505887 Msa0707270:three_prime_UTR 30.0%
!!! TGTTTTAATTTTGCCACTAC+CGG + chr4_4:80506409-80506428 None:intergenic 30.0%
TTGTCTCTTTCTCATGTATA+TGG - chr4_4:80506462-80506481 Msa0707270:intron 30.0%
TGTCTCTTTCTCATGTATAT+GGG - chr4_4:80506463-80506482 Msa0707270:intron 30.0%
TCTAGTTAGTTCAAATGAGA+AGG - chr4_4:80506571-80506590 Msa0707270:intron 30.0%
!!! TTTTTATTTTGGTTCGCAAG+GGG - chr4_4:80506664-80506683 Msa0707270:intron 30.0%
CTTGATTCTAAGTCTTTCTT+AGG - chr4_4:80506732-80506751 Msa0707270:intron 30.0%
GATCAAGAGTTAAGGTAATT+TGG + chr4_4:80506838-80506857 None:intergenic 30.0%
TGTTGTCTGTGTTAAATGAT+TGG + chr4_4:80506878-80506897 None:intergenic 30.0%
! TTGCAGGCCTTTTATTATAT+AGG - chr4_4:80506929-80506948 Msa0707270:intron 30.0%
!! AAGAGTGTGTTTTGCAAATA+GGG - chr4_4:80507014-80507033 Msa0707270:intron 30.0%
ATGAAATATTGGAACACTTG+AGG + chr4_4:80507138-80507157 None:intergenic 30.0%
TAGTTCGGTAGATGAAATAT+TGG + chr4_4:80507149-80507168 None:intergenic 30.0%
!! TGTATTTCATGGTTCTAGTT+CGG + chr4_4:80507164-80507183 None:intergenic 30.0%
! TACTGATTAGAAGCTAAAGA+CGG + chr4_4:80507376-80507395 None:intergenic 30.0%
! TTTTGCAGTAACAAAAAGGA+TGG - chr4_4:80507416-80507435 Msa0707270:CDS 30.0%
AAAATATGCTGTAAGGATTC+TGG - chr4_4:80507538-80507557 Msa0707270:CDS 30.0%
TGCAATGTAATCATCTTATG+TGG - chr4_4:80507602-80507621 Msa0707270:five_prime_UTR 30.0%
! CTATTAACTCCTTTTTACTC+GGG + chr4_4:80505798-80505817 None:intergenic 30.0%
!!! TTTTATCGGTGTTGAACTTT+TGG - chr4_4:80505867-80505886 Msa0707270:three_prime_UTR 30.0%
!!! TTTATCGGTGTTGAACTTTT+GGG - chr4_4:80505868-80505887 Msa0707270:three_prime_UTR 30.0%
!!! TGTTTTAATTTTGCCACTAC+CGG + chr4_4:80506409-80506428 None:intergenic 30.0%
TTGTCTCTTTCTCATGTATA+TGG - chr4_4:80506462-80506481 Msa0707270:intron 30.0%
TGTCTCTTTCTCATGTATAT+GGG - chr4_4:80506463-80506482 Msa0707270:intron 30.0%
TCTAGTTAGTTCAAATGAGA+AGG - chr4_4:80506571-80506590 Msa0707270:intron 30.0%
!!! TTTTTATTTTGGTTCGCAAG+GGG - chr4_4:80506664-80506683 Msa0707270:intron 30.0%
CTTGATTCTAAGTCTTTCTT+AGG - chr4_4:80506732-80506751 Msa0707270:intron 30.0%
GATCAAGAGTTAAGGTAATT+TGG + chr4_4:80506838-80506857 None:intergenic 30.0%
TGTTGTCTGTGTTAAATGAT+TGG + chr4_4:80506878-80506897 None:intergenic 30.0%
! TTGCAGGCCTTTTATTATAT+AGG - chr4_4:80506929-80506948 Msa0707270:intron 30.0%
!! AAGAGTGTGTTTTGCAAATA+GGG - chr4_4:80507014-80507033 Msa0707270:intron 30.0%
ATGAAATATTGGAACACTTG+AGG + chr4_4:80507138-80507157 None:intergenic 30.0%
TAGTTCGGTAGATGAAATAT+TGG + chr4_4:80507149-80507168 None:intergenic 30.0%
!! TGTATTTCATGGTTCTAGTT+CGG + chr4_4:80507164-80507183 None:intergenic 30.0%
! TACTGATTAGAAGCTAAAGA+CGG + chr4_4:80507376-80507395 None:intergenic 30.0%
! TTTTGCAGTAACAAAAAGGA+TGG - chr4_4:80507416-80507435 Msa0707270:CDS 30.0%
AAAATATGCTGTAAGGATTC+TGG - chr4_4:80507538-80507557 Msa0707270:CDS 30.0%
TGCAATGTAATCATCTTATG+TGG - chr4_4:80507602-80507621 Msa0707270:five_prime_UTR 30.0%
! TGATGATAATGTTGAGGTGT+TGG + chr4_4:80505974-80505993 None:intergenic 35.0%
! TGAACGTGATGATAATGTTG+AGG + chr4_4:80505980-80505999 None:intergenic 35.0%
GGAACAAATATCTTAGTAGC+TGG + chr4_4:80506028-80506047 None:intergenic 35.0%
TTATTTAATGAAGGGGGCAA+TGG + chr4_4:80506151-80506170 None:intergenic 35.0%
GGAAACGAAGAAATTGAGAA+AGG - chr4_4:80506234-80506253 Msa0707270:intron 35.0%
GAAATTGAGAAAGGATGCAA+TGG - chr4_4:80506243-80506262 Msa0707270:intron 35.0%
AGACAATAGATACCTTGACT+TGG + chr4_4:80506448-80506467 None:intergenic 35.0%
! AAGCTGCATCAAGACTTTTA+AGG - chr4_4:80506547-80506566 Msa0707270:intron 35.0%
! AGCTGCATCAAGACTTTTAA+GGG - chr4_4:80506548-80506567 Msa0707270:intron 35.0%
TCACCTCTACGTTCAATTAA+AGG - chr4_4:80506755-80506774 Msa0707270:intron 35.0%
CACCTCTACGTTCAATTAAA+GGG - chr4_4:80506756-80506775 Msa0707270:intron 35.0%
ATTAAAGGGCTATGACTATG+AGG - chr4_4:80506770-80506789 Msa0707270:intron 35.0%
!! CATAAAGCACTGTGAATTAG+TGG - chr4_4:80506966-80506985 Msa0707270:intron 35.0%
!! GAAGAGTGTGTTTTGCAAAT+AGG - chr4_4:80507013-80507032 Msa0707270:intron 35.0%
AGGTGTTTCTTAAGCTAGAA+AGG + chr4_4:80507098-80507117 None:intergenic 35.0%
!! TTGGTTTGGAGGAGAAAAAT+TGG + chr4_4:80507299-80507318 None:intergenic 35.0%
ATCAAGATTTGAGCTAGCAT+TGG + chr4_4:80507318-80507337 None:intergenic 35.0%
! TGATGATAATGTTGAGGTGT+TGG + chr4_4:80505974-80505993 None:intergenic 35.0%
! TGAACGTGATGATAATGTTG+AGG + chr4_4:80505980-80505999 None:intergenic 35.0%
GGAACAAATATCTTAGTAGC+TGG + chr4_4:80506028-80506047 None:intergenic 35.0%
TTATTTAATGAAGGGGGCAA+TGG + chr4_4:80506151-80506170 None:intergenic 35.0%
GGAAACGAAGAAATTGAGAA+AGG - chr4_4:80506234-80506253 Msa0707270:intron 35.0%
GAAATTGAGAAAGGATGCAA+TGG - chr4_4:80506243-80506262 Msa0707270:intron 35.0%
AGACAATAGATACCTTGACT+TGG + chr4_4:80506448-80506467 None:intergenic 35.0%
! AAGCTGCATCAAGACTTTTA+AGG - chr4_4:80506547-80506566 Msa0707270:intron 35.0%
! AGCTGCATCAAGACTTTTAA+GGG - chr4_4:80506548-80506567 Msa0707270:intron 35.0%
TCACCTCTACGTTCAATTAA+AGG - chr4_4:80506755-80506774 Msa0707270:intron 35.0%
CACCTCTACGTTCAATTAAA+GGG - chr4_4:80506756-80506775 Msa0707270:intron 35.0%
ATTAAAGGGCTATGACTATG+AGG - chr4_4:80506770-80506789 Msa0707270:intron 35.0%
!! CATAAAGCACTGTGAATTAG+TGG - chr4_4:80506966-80506985 Msa0707270:intron 35.0%
!! GAAGAGTGTGTTTTGCAAAT+AGG - chr4_4:80507013-80507032 Msa0707270:intron 35.0%
AGGTGTTTCTTAAGCTAGAA+AGG + chr4_4:80507098-80507117 None:intergenic 35.0%
!! TTGGTTTGGAGGAGAAAAAT+TGG + chr4_4:80507299-80507318 None:intergenic 35.0%
ATCAAGATTTGAGCTAGCAT+TGG + chr4_4:80507318-80507337 None:intergenic 35.0%
TTGTCATTCTCTCTCTCTCT+CGG + chr4_4:80505934-80505953 None:intergenic 40.0%
!!! GTAGCTGGCCATGATTTTTT+TGG + chr4_4:80506013-80506032 None:intergenic 40.0%
GCAGAAGAAATGAGTGAAGT+TGG + chr4_4:80506067-80506086 None:intergenic 40.0%
GAAACAGCAAGTTCATCATC+TGG + chr4_4:80506091-80506110 None:intergenic 40.0%
CAGAATTCTCCACTAAACAG+AGG - chr4_4:80506119-80506138 Msa0707270:intron 40.0%
TTTGAGTAGTTGCTGAACAG+CGG - chr4_4:80506198-80506217 Msa0707270:intron 40.0%
AGCCCTTTAATTGAACGTAG+AGG + chr4_4:80506761-80506780 None:intergenic 40.0%
TTCACAGTGCTTTATGCCTA+TGG + chr4_4:80506962-80506981 None:intergenic 40.0%
!! GATTTGAGCTAGCATTGGTT+TGG + chr4_4:80507313-80507332 None:intergenic 40.0%
TGAAGAGCTAAGTGTTTGCA+AGG - chr4_4:80507450-80507469 Msa0707270:CDS 40.0%
ATTGAGGTGACATAAAACCC+AGG - chr4_4:80507493-80507512 Msa0707270:CDS 40.0%
TTGAGGTGACATAAAACCCA+GGG - chr4_4:80507494-80507513 Msa0707270:CDS 40.0%
TGACATAAAACCCAGGGTTA+AGG - chr4_4:80507500-80507519 Msa0707270:CDS 40.0%
AATGTTGGAAGTTAACGGCA+AGG + chr4_4:80507674-80507693 None:intergenic 40.0%
TTGTCATTCTCTCTCTCTCT+CGG + chr4_4:80505934-80505953 None:intergenic 40.0%
!!! GTAGCTGGCCATGATTTTTT+TGG + chr4_4:80506013-80506032 None:intergenic 40.0%
GCAGAAGAAATGAGTGAAGT+TGG + chr4_4:80506067-80506086 None:intergenic 40.0%
GAAACAGCAAGTTCATCATC+TGG + chr4_4:80506091-80506110 None:intergenic 40.0%
CAGAATTCTCCACTAAACAG+AGG - chr4_4:80506119-80506138 Msa0707270:intron 40.0%
TTTGAGTAGTTGCTGAACAG+CGG - chr4_4:80506198-80506217 Msa0707270:intron 40.0%
AGCCCTTTAATTGAACGTAG+AGG + chr4_4:80506761-80506780 None:intergenic 40.0%
TTCACAGTGCTTTATGCCTA+TGG + chr4_4:80506962-80506981 None:intergenic 40.0%
!! GATTTGAGCTAGCATTGGTT+TGG + chr4_4:80507313-80507332 None:intergenic 40.0%
TGAAGAGCTAAGTGTTTGCA+AGG - chr4_4:80507450-80507469 Msa0707270:CDS 40.0%
ATTGAGGTGACATAAAACCC+AGG - chr4_4:80507493-80507512 Msa0707270:CDS 40.0%
TTGAGGTGACATAAAACCCA+GGG - chr4_4:80507494-80507513 Msa0707270:CDS 40.0%
TGACATAAAACCCAGGGTTA+AGG - chr4_4:80507500-80507519 Msa0707270:CDS 40.0%
AATGTTGGAAGTTAACGGCA+AGG + chr4_4:80507674-80507693 None:intergenic 40.0%
! AACTCCTTTTTACTCGGGCA+GGG + chr4_4:80505793-80505812 None:intergenic 45.0%
! TAACTCCTTTTTACTCGGGC+AGG + chr4_4:80505794-80505813 None:intergenic 45.0%
TGTCATTCTCTCTCTCTCTC+GGG + chr4_4:80505933-80505952 None:intergenic 45.0%
! GAAGTTGGAGAGCATAGTGT+GGG + chr4_4:80506052-80506071 None:intergenic 45.0%
! TGAAGTTGGAGAGCATAGTG+TGG + chr4_4:80506053-80506072 None:intergenic 45.0%
TGGATGGTACCTCTGTTTAG+TGG + chr4_4:80506131-80506150 None:intergenic 45.0%
TTAATGAAGGGGGCAATGGA+TGG + chr4_4:80506147-80506166 None:intergenic 45.0%
TGAGAAAGGATGCAATGGTG+AGG - chr4_4:80506248-80506267 Msa0707270:intron 45.0%
GAGAAAGGATGCAATGGTGA+GGG - chr4_4:80506249-80506268 Msa0707270:intron 45.0%
ATTGCAACAGTTCCTGGCTT+TGG - chr4_4:80506288-80506307 Msa0707270:intron 45.0%
CATGGCCTGTATGCCTTTAT+AGG + chr4_4:80506321-80506340 None:intergenic 45.0%
TAAAAGGCCTGCAAGTGTGT+AGG + chr4_4:80506923-80506942 None:intergenic 45.0%
! GGTGTTAGAGAGTGTGTTGT+CGG - chr4_4:80507035-80507054 Msa0707270:intron 45.0%
!! TTGAGCTAGCATTGGTTTGG+AGG + chr4_4:80507310-80507329 None:intergenic 45.0%
ATGTCACCTCAATGAAGCAG+TGG + chr4_4:80507486-80507505 None:intergenic 45.0%
AAAACCCAGGGTTAAGGAAG+AGG - chr4_4:80507506-80507525 Msa0707270:CDS 45.0%
AAACCCAGGGTTAAGGAAGA+GGG - chr4_4:80507507-80507526 Msa0707270:CDS 45.0%
! AACTCCTTTTTACTCGGGCA+GGG + chr4_4:80505793-80505812 None:intergenic 45.0%
! TAACTCCTTTTTACTCGGGC+AGG + chr4_4:80505794-80505813 None:intergenic 45.0%
TGTCATTCTCTCTCTCTCTC+GGG + chr4_4:80505933-80505952 None:intergenic 45.0%
! GAAGTTGGAGAGCATAGTGT+GGG + chr4_4:80506052-80506071 None:intergenic 45.0%
! TGAAGTTGGAGAGCATAGTG+TGG + chr4_4:80506053-80506072 None:intergenic 45.0%
TGGATGGTACCTCTGTTTAG+TGG + chr4_4:80506131-80506150 None:intergenic 45.0%
TTAATGAAGGGGGCAATGGA+TGG + chr4_4:80506147-80506166 None:intergenic 45.0%
TGAGAAAGGATGCAATGGTG+AGG - chr4_4:80506248-80506267 Msa0707270:intron 45.0%
GAGAAAGGATGCAATGGTGA+GGG - chr4_4:80506249-80506268 Msa0707270:intron 45.0%
ATTGCAACAGTTCCTGGCTT+TGG - chr4_4:80506288-80506307 Msa0707270:intron 45.0%
CATGGCCTGTATGCCTTTAT+AGG + chr4_4:80506321-80506340 None:intergenic 45.0%
TAAAAGGCCTGCAAGTGTGT+AGG + chr4_4:80506923-80506942 None:intergenic 45.0%
! GGTGTTAGAGAGTGTGTTGT+CGG - chr4_4:80507035-80507054 Msa0707270:intron 45.0%
!! TTGAGCTAGCATTGGTTTGG+AGG + chr4_4:80507310-80507329 None:intergenic 45.0%
ATGTCACCTCAATGAAGCAG+TGG + chr4_4:80507486-80507505 None:intergenic 45.0%
AAAACCCAGGGTTAAGGAAG+AGG - chr4_4:80507506-80507525 Msa0707270:CDS 45.0%
AAACCCAGGGTTAAGGAAGA+GGG - chr4_4:80507507-80507526 Msa0707270:CDS 45.0%
GTCATTCTCTCTCTCTCTCG+GGG + chr4_4:80505932-80505951 None:intergenic 50.0%
AACAGCGGTTGCAAAGCATG+TGG - chr4_4:80506213-80506232 Msa0707270:intron 50.0%
AAGGATGCAATGGTGAGGGT+AGG - chr4_4:80506253-80506272 Msa0707270:intron 50.0%
AATGGTGAGGGTAGGATGCA+GGG - chr4_4:80506261-80506280 Msa0707270:intron 50.0%
GGTGGTATTGCAACAGTTCC+TGG - chr4_4:80506282-80506301 Msa0707270:intron 50.0%
CTTTGGCTGGTGGCCTATAA+AGG - chr4_4:80506305-80506324 Msa0707270:intron 50.0%
! GGTGGCCTATAAAGGCATAC+AGG - chr4_4:80506313-80506332 Msa0707270:intron 50.0%
GAAGCCACAAATCCAGGACA+TGG + chr4_4:80506339-80506358 None:intergenic 50.0%
TGTCCTGGATTTGTGGCTTC+TGG - chr4_4:80506339-80506358 Msa0707270:intron 50.0%
GATTTGTGGCTTCTGGTGGT+AGG - chr4_4:80506346-80506365 Msa0707270:intron 50.0%
GACTTGGAGTCAGTTGCAGT+TGG + chr4_4:80506432-80506451 None:intergenic 50.0%
! CTGCAACTGACTCCAAGTCA+AGG - chr4_4:80506433-80506452 Msa0707270:intron 50.0%
CCTGCAAGTGTGTAGGCTAA+GGG + chr4_4:80506916-80506935 None:intergenic 50.0%
TGTCGGCACTCAAGCACTAT+TGG - chr4_4:80507052-80507071 Msa0707270:intron 50.0%
TACCAGCCACTGCTTCATTG+AGG - chr4_4:80507477-80507496 Msa0707270:CDS 50.0%
AACCCAGGGTTAAGGAAGAG+GGG - chr4_4:80507508-80507527 Msa0707270:CDS 50.0%
GGAAGTTAACGGCAAGGAAC+CGG + chr4_4:80507668-80507687 None:intergenic 50.0%
GTCATTCTCTCTCTCTCTCG+GGG + chr4_4:80505932-80505951 None:intergenic 50.0%
AACAGCGGTTGCAAAGCATG+TGG - chr4_4:80506213-80506232 Msa0707270:intron 50.0%
AAGGATGCAATGGTGAGGGT+AGG - chr4_4:80506253-80506272 Msa0707270:intron 50.0%
AATGGTGAGGGTAGGATGCA+GGG - chr4_4:80506261-80506280 Msa0707270:intron 50.0%
GGTGGTATTGCAACAGTTCC+TGG - chr4_4:80506282-80506301 Msa0707270:intron 50.0%
CTTTGGCTGGTGGCCTATAA+AGG - chr4_4:80506305-80506324 Msa0707270:intron 50.0%
! GGTGGCCTATAAAGGCATAC+AGG - chr4_4:80506313-80506332 Msa0707270:intron 50.0%
GAAGCCACAAATCCAGGACA+TGG + chr4_4:80506339-80506358 None:intergenic 50.0%
TGTCCTGGATTTGTGGCTTC+TGG - chr4_4:80506339-80506358 Msa0707270:intron 50.0%
GATTTGTGGCTTCTGGTGGT+AGG - chr4_4:80506346-80506365 Msa0707270:intron 50.0%
GACTTGGAGTCAGTTGCAGT+TGG + chr4_4:80506432-80506451 None:intergenic 50.0%
! CTGCAACTGACTCCAAGTCA+AGG - chr4_4:80506433-80506452 Msa0707270:intron 50.0%
CCTGCAAGTGTGTAGGCTAA+GGG + chr4_4:80506916-80506935 None:intergenic 50.0%
TGTCGGCACTCAAGCACTAT+TGG - chr4_4:80507052-80507071 Msa0707270:intron 50.0%
TACCAGCCACTGCTTCATTG+AGG - chr4_4:80507477-80507496 Msa0707270:CDS 50.0%
AACCCAGGGTTAAGGAAGAG+GGG - chr4_4:80507508-80507527 Msa0707270:CDS 50.0%
GGAAGTTAACGGCAAGGAAC+CGG + chr4_4:80507668-80507687 None:intergenic 50.0%
! GTTGGAGAGCATAGTGTGGG+AGG + chr4_4:80506049-80506068 None:intergenic 55.0%
CAATGGTGAGGGTAGGATGC+AGG - chr4_4:80506260-80506279 Msa0707270:intron 55.0%
!! CAACAGTTCCTGGCTTTGGC+TGG - chr4_4:80506292-80506311 Msa0707270:intron 55.0%
AAGGCATACAGGCCATGTCC+TGG - chr4_4:80506324-80506343 Msa0707270:intron 55.0%
CAGGCCATGTCCTGGATTTG+TGG - chr4_4:80506332-80506351 Msa0707270:intron 55.0%
CCACCAGAAGCCACAAATCC+AGG + chr4_4:80506345-80506364 None:intergenic 55.0%
CCTGGATTTGTGGCTTCTGG+TGG - chr4_4:80506342-80506361 Msa0707270:intron 55.0%
TGGTGGTAGGTACAGACGAC+AGG - chr4_4:80506359-80506378 Msa0707270:intron 55.0%
GGTGGTAGGTACAGACGACA+GGG - chr4_4:80506360-80506379 Msa0707270:intron 55.0%
CAGACGACAGGGACAAAGCA+TGG - chr4_4:80506371-80506390 Msa0707270:intron 55.0%
ACAGGGACAAAGCATGGACG+AGG - chr4_4:80506377-80506396 Msa0707270:intron 55.0%
AGCATGGACGAGGTTGTCTC+CGG - chr4_4:80506387-80506406 Msa0707270:intron 55.0%
CCCTTAGCCTACACACTTGC+AGG - chr4_4:80506913-80506932 Msa0707270:intron 55.0%
GCCTGCAAGTGTGTAGGCTA+AGG + chr4_4:80506917-80506936 None:intergenic 55.0%
CACCTCAATGAAGCAGTGGC+TGG + chr4_4:80507482-80507501 None:intergenic 55.0%
TGCCCCTCTTCCTTAACCCT+GGG + chr4_4:80507513-80507532 None:intergenic 55.0%
TTGCCCCTCTTCCTTAACCC+TGG + chr4_4:80507514-80507533 None:intergenic 55.0%
! GTTGGAGAGCATAGTGTGGG+AGG + chr4_4:80506049-80506068 None:intergenic 55.0%
CAATGGTGAGGGTAGGATGC+AGG - chr4_4:80506260-80506279 Msa0707270:intron 55.0%
!! CAACAGTTCCTGGCTTTGGC+TGG - chr4_4:80506292-80506311 Msa0707270:intron 55.0%
AAGGCATACAGGCCATGTCC+TGG - chr4_4:80506324-80506343 Msa0707270:intron 55.0%
CAGGCCATGTCCTGGATTTG+TGG - chr4_4:80506332-80506351 Msa0707270:intron 55.0%
CCACCAGAAGCCACAAATCC+AGG + chr4_4:80506345-80506364 None:intergenic 55.0%
CCTGGATTTGTGGCTTCTGG+TGG - chr4_4:80506342-80506361 Msa0707270:intron 55.0%
TGGTGGTAGGTACAGACGAC+AGG - chr4_4:80506359-80506378 Msa0707270:intron 55.0%
GGTGGTAGGTACAGACGACA+GGG - chr4_4:80506360-80506379 Msa0707270:intron 55.0%
CAGACGACAGGGACAAAGCA+TGG - chr4_4:80506371-80506390 Msa0707270:intron 55.0%
ACAGGGACAAAGCATGGACG+AGG - chr4_4:80506377-80506396 Msa0707270:intron 55.0%
AGCATGGACGAGGTTGTCTC+CGG - chr4_4:80506387-80506406 Msa0707270:intron 55.0%
CCCTTAGCCTACACACTTGC+AGG - chr4_4:80506913-80506932 Msa0707270:intron 55.0%
GCCTGCAAGTGTGTAGGCTA+AGG + chr4_4:80506917-80506936 None:intergenic 55.0%
CACCTCAATGAAGCAGTGGC+TGG + chr4_4:80507482-80507501 None:intergenic 55.0%
TGCCCCTCTTCCTTAACCCT+GGG + chr4_4:80507513-80507532 None:intergenic 55.0%
TTGCCCCTCTTCCTTAACCC+TGG + chr4_4:80507514-80507533 None:intergenic 55.0%
CGCACCCTGCCCGAGTAAAA+AGG - chr4_4:80505786-80505805 Msa0707270:three_prime_UTR 60.0%
!! CAGTTCCTGGCTTTGGCTGG+TGG - chr4_4:80506295-80506314 Msa0707270:intron 60.0%
ATAGGCCACCAGCCAAAGCC+AGG + chr4_4:80506303-80506322 None:intergenic 60.0%
GACGAGGTTGTCTCCGGTAG+TGG - chr4_4:80506393-80506412 Msa0707270:intron 60.0%
CGCACCCTGCCCGAGTAAAA+AGG - chr4_4:80505786-80505805 Msa0707270:three_prime_UTR 60.0%
!! CAGTTCCTGGCTTTGGCTGG+TGG - chr4_4:80506295-80506314 Msa0707270:intron 60.0%
ATAGGCCACCAGCCAAAGCC+AGG + chr4_4:80506303-80506322 None:intergenic 60.0%
GACGAGGTTGTCTCCGGTAG+TGG - chr4_4:80506393-80506412 Msa0707270:intron 60.0%
GGTGAGGGTAGGATGCAGGG+TGG - chr4_4:80506264-80506283 Msa0707270:intron 65.0%
GGTGAGGGTAGGATGCAGGG+TGG - chr4_4:80506264-80506283 Msa0707270:intron 65.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 80505786 80507754 80505786 ID=Msa0707270;Name=Msa0707270
chr4_4 mRNA 80505786 80507754 80505786 ID=Msa0707270-mRNA-1;Parent=Msa0707270;Name=Msa0707270-mRNA-1;_AED=0.35;_eAED=0.35;_QI=161|1|1|1|0.5|0.66|3|294|155
chr4_4 exon 80505786 80506116 80505786 ID=Msa0707270-mRNA-1:exon:26257;Parent=Msa0707270-mRNA-1
chr4_4 exon 80507086 80507322 80507086 ID=Msa0707270-mRNA-1:exon:26256;Parent=Msa0707270-mRNA-1
chr4_4 exon 80507400 80507754 80507400 ID=Msa0707270-mRNA-1:exon:26255;Parent=Msa0707270-mRNA-1
chr4_4 five_prime_UTR 80507594 80507754 80507594 ID=Msa0707270-mRNA-1:five_prime_utr;Parent=Msa0707270-mRNA-1
chr4_4 CDS 80507400 80507593 80507400 ID=Msa0707270-mRNA-1:cds;Parent=Msa0707270-mRNA-1
chr4_4 CDS 80507086 80507322 80507086 ID=Msa0707270-mRNA-1:cds;Parent=Msa0707270-mRNA-1
chr4_4 CDS 80506080 80506116 80506080 ID=Msa0707270-mRNA-1:cds;Parent=Msa0707270-mRNA-1
chr4_4 three_prime_UTR 80505786 80506079 80505786 ID=Msa0707270-mRNA-1:three_prime_utr;Parent=Msa0707270-mRNA-1
Gene Sequence

>Msa0707270

ATGACAACAGCTTTCTTCACAGTTCCAACACCTCAACATTATCATCACGTTCAATTGTACAAACCAAAAAAATCATGGCCAGCTACTAAGATATTTGTTCCTCCCACACTATGCTCTCCAACTTCACTCATTTCTTCTGCACCAGATGATGAACTTGCTGTTTCTGATCAATCAGAATTCTCCACTAAACAGAGCGGTTGCAAAGCATGTGGAAACGAAGAAATTGAGAAAGGATGCAATGGTGAGGGTAGGATGCAGGGTGGTATTGCAACAGTTCCTGGCTTTGGCTGGTGGCCTATAAAGGCATACAGGCCATGTCCTGGATTTGTGGCTTCTGGTGGTAGGTACAGACGACAGGGACAAAGCATGGACGAGGTTGTCTCCGGTAGTGGCAAAATTAAAACACCAACTGCAACTGACTCCAAGTCAAGTAACAAAAAGGATGGATCGAACAAATTGAAGAGCTAA

Protein sequence

>Msa0707270

MTTAFFTVPTPQHYHHVQLYKPKKSWPATKIFVPPTLCSPTSLISSAPDDELAVSDQSEFSTKQSGCKACGNEEIEKGCNGEGRMQGGIATVPGFGWWPIKAYRPCPGFVASGGRYRRQGQSMDEVVSGSGKIKTPTATDSKSSNKKDGSNKLKS*