AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0073280

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0073280 MtrunA17_Chr1g0180551 94.234 555 32 0 1 555 70 624 0.0 1064
Msa0073280 MtrunA17_Chr1g0180541 77.778 558 114 2 1 555 1 551 0.0 872
Msa0073280 MtrunA17_Chr4g0028411 56.697 545 217 6 13 552 12 542 0.0 612
Msa0073280 MtrunA17_Chr2g0327341 53.875 542 234 6 13 552 12 539 0.0 567
Msa0073280 MtrunA17_Chr1g0157401 44.693 537 287 6 13 547 27 555 3.10e-148 437
Msa0073280 MtrunA17_Chr5g0409771 39.344 549 302 8 6 544 20 547 7.32e-132 395
Msa0073280 MtrunA17_Chr4g0039791 41.712 549 295 10 4 544 22 553 3.66e-131 394
Msa0073280 MtrunA17_Chr1g0197391 41.563 563 303 13 3 555 24 570 2.50e-129 389
Msa0073280 MtrunA17_Chr5g0409791 39.497 557 306 10 4 544 19 560 1.16e-126 382
Msa0073280 MtrunA17_Chr8g0353341 44.055 513 267 11 13 515 24 526 2.23e-126 380
Msa0073280 MtrunA17_Chr5g0395431 40.926 540 281 11 21 544 62 579 1.65e-123 375
Msa0073280 MtrunA17_Chr4g0072561 42.214 533 283 11 20 544 25 540 4.97e-123 373
Msa0073280 MtrunA17_Chr3g0116271 41.199 534 272 13 24 545 48 551 1.09e-122 372
Msa0073280 MtrunA17_Chr1g0186071 43.633 534 262 12 27 549 51 556 2.80e-120 366
Msa0073280 MtrunA17_Chr3g0116251 39.734 526 275 11 32 545 54 549 2.65e-116 355
Msa0073280 MtrunA17_Chr4g0000461 41.509 530 279 12 27 544 24 534 2.38e-115 352
Msa0073280 MtrunA17_Chr3g0102411 34.353 556 337 11 6 555 8 541 3.13e-106 329
Msa0073280 MtrunA17_Chr2g0334131 50.362 276 132 4 272 544 3 276 7.11e-81 254
Msa0073280 MtrunA17_Chr1g0157431 37.500 344 208 5 13 355 27 364 6.70e-59 204
Msa0073280 MtrunA17_Chr6g0471921 29.026 503 319 13 53 542 28 505 4.67e-47 172
Msa0073280 MtrunA17_Chr4g0028451 64.486 107 29 1 410 516 10 107 3.05e-40 141
Msa0073280 MtrunA17_Chr3g0109731 25.719 556 351 16 28 544 14 546 6.82e-37 144
Msa0073280 MtrunA17_Chr2g0292471 27.306 553 327 19 44 545 21 549 1.42e-36 143
Msa0073280 MtrunA17_Chr5g0433241 26.455 567 361 14 16 551 6 547 3.18e-35 139
Msa0073280 MtrunA17_Chr2g0301671 25.475 526 347 14 57 551 47 558 5.63e-35 139
Msa0073280 MtrunA17_Chr5g0433231 27.778 558 346 19 28 551 14 548 2.41e-34 137
Msa0073280 MtrunA17_Chr5g0396331 26.531 539 340 20 28 538 14 524 4.39e-34 135
Msa0073280 MtrunA17_Chr7g0252691 23.364 535 358 15 56 551 206 727 1.13e-32 133
Msa0073280 MtrunA17_Chr8g0370701 27.432 514 315 17 60 541 86 573 3.76e-32 130
Msa0073280 MtrunA17_Chr6g0471311 26.799 556 356 17 28 551 14 550 1.02e-30 126
Msa0073280 MtrunA17_Chr5g0396311 25.737 509 328 13 57 538 41 526 1.10e-30 125
Msa0073280 MtrunA17_Chr5g0433221 26.344 558 354 19 28 551 14 548 1.77e-29 122
Msa0073280 MtrunA17_Chr1g0205711 25.142 529 311 20 9 469 57 568 9.51e-28 118
Msa0073280 MtrunA17_Chr4g0068151 23.870 553 378 15 29 551 19 558 1.60e-27 116
Msa0073280 MtrunA17_Chr1g0194371 24.311 617 351 21 23 545 36 630 1.25e-25 111
Msa0073280 MtrunA17_Chr5g0406681 23.178 535 373 18 28 541 41 558 1.31e-24 107
Msa0073280 MtrunA17_Chr8g0370731 24.587 484 321 14 83 541 20 484 2.85e-24 106
Msa0073280 MtrunA17_Chr7g0270221 23.715 603 332 22 23 545 36 590 1.38e-23 105
Msa0073280 MtrunA17_Chr4g0004841 27.092 251 166 7 305 544 88 332 1.55e-22 99.0
Msa0073280 MtrunA17_Chr5g0396711 23.339 587 339 23 47 545 68 631 4.72e-22 100
Msa0073280 MtrunA17_Chr2g0329161 28.451 355 204 15 157 478 641 978 9.98e-22 100
Msa0073280 MtrunA17_Chr4g0004101 25.911 247 170 6 305 544 83 323 1.00e-21 96.7
Msa0073280 MtrunA17_Chr5g0396691 23.422 602 320 24 47 545 68 631 4.37e-21 97.4
Msa0073280 MtrunA17_Chr4g0033141 26.119 402 236 16 195 545 675 1066 1.97e-19 92.8
Msa0073280 MtrunA17_Chr8g0388081 22.959 588 342 23 45 545 7 570 3.70e-19 91.3
Msa0073280 MtrunA17_Chr2g0334121 28.372 215 143 4 1 212 1 207 7.52e-19 85.5
Msa0073280 MtrunA17_Chr3g0120731 23.935 493 283 18 54 470 135 611 5.00e-18 87.8
Msa0073280 MtrunA17_Chr1g0162621 23.308 532 291 20 33 479 49 548 3.51e-17 85.1
Msa0073280 MtrunA17_Chr8g0377991 27.500 240 140 7 305 519 445 675 1.81e-16 82.8
Msa0073280 MtrunA17_Chr4g0034181 21.429 504 297 19 48 479 70 546 1.37e-15 80.1
Msa0073280 MtrunA17_Chr3g0121951 26.238 202 123 4 340 519 469 666 6.13e-14 74.7
Msa0073280 MtrunA17_Chr1g0160041 32.335 167 94 7 321 476 427 585 8.92e-13 71.2
Msa0073280 MtrunA17_Chr3g0121931 25.628 199 121 4 344 519 477 671 2.19e-12 70.1
Msa0073280 MtrunA17_Chr3g0124631 28.155 206 134 6 55 252 105 304 4.50e-12 68.9
Msa0073280 MtrunA17_Chr3g0124631 30.539 167 97 7 321 476 429 587 7.18e-12 68.2
Msa0073280 MtrunA17_Chr4g0028441 64.583 48 15 2 229 276 5 50 1.13e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0073280 AT4G05160.1 57.064 545 220 7 13 555 12 544 0.0 617
Msa0073280 AT1G20510.1 43.119 545 296 6 2 545 6 537 6.31e-148 437
Msa0073280 AT1G20480.1 43.066 548 298 10 3 547 24 560 7.99e-139 414
Msa0073280 AT4G19010.1 41.324 559 302 10 6 555 25 566 2.00e-137 410
Msa0073280 AT1G20500.1 42.909 550 292 10 3 547 13 545 1.24e-136 408
Msa0073280 AT5G38120.1 39.964 553 299 11 3 545 14 543 2.02e-129 389
Msa0073280 AT1G65060.1 41.308 535 284 9 20 544 42 556 1.34e-125 380
Msa0073280 AT3G21240.1 40.395 557 292 13 3 544 15 546 3.26e-120 366
Msa0073280 AT5G63380.1 38.998 559 296 15 6 544 17 550 3.73e-119 363
Msa0073280 AT1G20510.2 41.164 481 269 6 2 481 6 473 1.00e-116 354
Msa0073280 AT5G38120.3 38.550 524 289 11 3 516 14 514 1.68e-112 345
Msa0073280 AT3G21230.1 40.801 549 288 13 26 554 39 570 3.81e-111 343
Msa0073280 AT1G51680.1 40.525 533 289 12 26 544 35 553 1.59e-110 341
Msa0073280 AT1G20510.3 39.434 459 264 6 2 459 6 451 4.96e-103 318
Msa0073280 AT5G38120.4 38.650 489 267 11 3 481 14 479 7.71e-102 316
Msa0073280 AT5G38120.2 38.650 489 267 11 3 481 14 479 7.71e-102 316
Msa0073280 AT3G21230.3 39.726 511 271 13 26 516 39 532 1.31e-97 307
Msa0073280 AT1G62940.1 35.150 532 319 10 21 544 19 532 1.68e-97 306
Msa0073280 AT1G51680.3 39.010 505 280 11 26 516 35 525 1.65e-96 304
Msa0073280 AT3G21240.2 37.931 493 266 13 3 480 15 482 1.58e-91 290
Msa0073280 AT3G21240.3 37.931 493 266 13 3 480 15 482 1.58e-91 290
Msa0073280 AT3G21230.2 38.737 475 254 13 26 480 39 496 2.00e-84 271
Msa0073280 AT1G65060.2 36.504 452 257 9 20 461 42 473 4.06e-84 270
Msa0073280 AT1G51680.2 37.953 469 263 11 26 480 35 489 2.59e-82 266
Msa0073280 AT1G20490.2 36.977 430 251 11 3 427 13 427 2.98e-76 248
Msa0073280 AT1G20490.1 36.977 430 251 11 3 427 13 427 2.98e-76 248
Msa0073280 AT3G48990.1 31.677 483 302 10 67 542 43 504 4.19e-52 186
Msa0073280 AT3G21230.4 34.568 405 228 13 26 410 39 426 6.92e-48 173
Msa0073280 AT1G77240.1 27.455 550 358 11 28 555 14 544 1.76e-42 160
Msa0073280 AT1G21540.1 28.376 511 315 14 74 555 61 549 5.91e-42 159
Msa0073280 AT1G30520.2 27.747 537 333 17 57 555 34 553 6.06e-42 159
Msa0073280 AT1G30520.1 27.747 537 333 17 57 555 34 553 6.06e-42 159
Msa0073280 AT1G21530.1 27.539 512 315 17 74 555 61 546 4.93e-41 156
Msa0073280 AT1G21530.2 27.043 514 317 16 74 555 61 548 5.70e-41 156
Msa0073280 AT1G65880.1 25.528 568 350 18 21 544 11 549 5.50e-37 145
Msa0073280 AT3G16170.1 26.401 553 340 21 35 544 72 600 5.67e-37 145
Msa0073280 AT1G20560.1 25.847 561 363 16 28 555 16 556 5.38e-36 142
Msa0073280 AT1G65890.1 24.653 576 364 18 21 554 11 558 1.50e-35 140
Msa0073280 AT1G76290.1 26.769 523 329 15 57 551 41 537 2.29e-35 140
Msa0073280 AT1G66120.1 24.648 568 367 15 21 554 11 551 2.82e-34 137
Msa0073280 AT1G30520.3 27.703 444 280 14 57 476 34 460 9.32e-34 134
Msa0073280 AT1G30520.4 27.703 444 280 14 57 476 34 460 9.32e-34 134
Msa0073280 AT5G16370.1 26.799 556 354 20 26 551 12 544 1.60e-33 134
Msa0073280 AT5G16340.1 26.126 555 365 17 26 554 12 547 3.14e-33 134
Msa0073280 AT1G68270.1 24.694 571 340 17 21 554 11 528 1.11e-32 132
Msa0073280 AT5G36880.6 23.585 530 363 15 56 551 148 669 4.01e-31 128
Msa0073280 AT5G36880.3 23.585 530 363 15 56 551 148 669 4.01e-31 128
Msa0073280 AT5G36880.5 23.585 530 363 15 56 551 148 669 4.01e-31 128
Msa0073280 AT5G36880.1 23.585 530 363 15 56 551 148 669 4.01e-31 128
Msa0073280 AT1G75960.1 25.275 546 371 16 28 551 14 544 4.41e-31 127
Msa0073280 AT5G36880.2 23.585 530 363 15 56 551 198 719 4.86e-31 128
Msa0073280 AT1G20560.2 25.255 491 316 15 98 555 6 478 8.15e-29 120
Msa0073280 AT3G16910.1 25.765 392 270 10 174 551 177 561 2.49e-27 116
Msa0073280 AT5G27600.1 23.640 533 310 19 9 467 60 569 3.00e-26 114
Msa0073280 AT5G36880.4 23.348 454 312 12 56 480 148 594 5.05e-26 112
Msa0073280 AT2G17650.1 25.719 556 360 17 17 539 53 588 1.84e-25 111
Msa0073280 AT1G64400.1 26.626 492 268 24 47 467 69 538 1.23e-24 108
Msa0073280 AT2G47240.4 24.403 586 334 24 47 545 7 570 2.75e-24 107
Msa0073280 AT2G47240.1 24.403 586 334 24 47 545 66 629 2.93e-24 107
Msa0073280 AT2G47240.2 24.403 586 334 24 47 545 66 629 2.93e-24 107
Msa0073280 AT2G47240.3 24.403 586 334 24 47 545 66 629 2.93e-24 107
Msa0073280 AT4G23850.1 25.971 489 275 23 47 467 69 538 7.11e-23 103
Msa0073280 AT1G49430.1 25.141 533 307 24 20 479 38 551 2.49e-22 101
Msa0073280 AT3G05970.1 27.900 319 173 13 195 467 262 569 3.76e-21 98.2
Msa0073280 AT4G11030.1 24.600 500 268 23 47 467 69 538 8.74e-21 96.7
Msa0073280 AT2G04350.2 24.908 542 303 24 25 483 97 617 3.76e-19 91.7
Msa0073280 AT2G04350.1 24.908 542 303 24 25 483 97 617 3.76e-19 91.7
Msa0073280 AT3G23790.1 27.036 307 178 10 286 555 423 720 1.69e-17 86.7
Msa0073280 AT3G23790.1 29.921 254 153 12 14 248 68 315 7.42e-13 72.0
Msa0073280 AT4G14070.1 28.372 215 131 7 319 519 473 678 6.53e-14 75.1
Msa0073280 AT4G14070.1 29.064 203 122 7 37 220 106 305 6.30e-12 68.9
Msa0073280 AT1G77590.2 30.455 220 115 9 268 476 243 435 5.60e-13 72.0
Msa0073280 AT1G77590.1 30.455 220 115 9 268 476 389 581 8.21e-13 71.6

Find 180 sgRNAs with CRISPR-Local

Find 419 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACCTGAATGATTTCAATTT+TGG 0.042770 1_2:-46754550 None:intergenic
CGAATCAATTAGGGGAAATT+TGG 0.173843 1_2:+46756183 Msa0073280:CDS
TGAGAGCTCCGGCGAGTTTC+CGG 0.212749 1_2:+46754083 Msa0073280:CDS
CCCCTTCCACCGAATCAATT+AGG 0.246857 1_2:+46756173 Msa0073280:CDS
TGTCGGAGGTGGAGAAGTTT+AGG 0.260977 1_2:+46754373 Msa0073280:CDS
GGAGCCTTCCTTTCGAATTC+AGG 0.261357 1_2:+46756089 Msa0073280:CDS
GGGATCAGTGGGAAGGTTGA+TGG 0.289930 1_2:-46753593 None:intergenic
CGTCCAACCCTGATCATTAA+TGG 0.305183 1_2:-46756434 None:intergenic
CCCTTCCACCGAATCAATTA+GGG 0.305642 1_2:+46756174 Msa0073280:CDS
GATCAGGGTTGGACGCTTAC+TGG 0.310527 1_2:+46756442 Msa0073280:CDS
GCCCAAAATTGAAATCATTC+AGG 0.312101 1_2:+46754548 Msa0073280:CDS
CTTTCGAATTCAGGTTCAAC+TGG 0.317770 1_2:+46756098 Msa0073280:CDS
GAAAGGAAGGCTCCTTCCTT+TGG 0.318775 1_2:-46756080 None:intergenic
ATCTTTCCCGTGGGTGACTT+TGG 0.320822 1_2:-46758952 None:intergenic
CATCCTGAAATTTCTGATGC+TGG 0.321468 1_2:+46756747 Msa0073280:CDS
GCGGTTATTCTGTATTCTTC+AGG 0.324135 1_2:+46754126 Msa0073280:CDS
GCTGGTGGTGCTGCTCCTCT+TGG 0.326714 1_2:+46754492 Msa0073280:CDS
GTCGGAGGTGGAGAAGTTTA+GGG 0.334634 1_2:+46754374 Msa0073280:CDS
CATGGCTGGTAGATTTGATT+TGG 0.346754 1_2:+46754341 Msa0073280:CDS
ATGTTTGCAAACTAACAATC+TGG 0.348145 1_2:-46756145 None:intergenic
CAAGCTTAGGCTTGGAGTCT+TGG 0.350652 1_2:-46753906 None:intergenic
CGCAATGGTGTCGGCGGCGG+AGG 0.352268 1_2:-46753653 None:intergenic
GAAGGAGGTTAGGGAGAGGT+TGG 0.355494 1_2:-46753614 None:intergenic
ACGGGTATGTTTCAAATGTT+TGG 0.372054 1_2:+46754031 Msa0073280:CDS
AACTGGAACCTCGCCAGCTT+TGG 0.373517 1_2:-46756869 None:intergenic
ATTCAAACAGGAAGGAGGTT+AGG 0.373674 1_2:-46753624 None:intergenic
AGTTCGGAGACGGTGTATAA+TGG 0.378827 1_2:-46753871 None:intergenic
TGCGCTCGCTGATGCGCAAA+CGG 0.381833 1_2:+46753672 Msa0073280:CDS
GAAGAATGTGTTCCTTTGTT+TGG 0.382457 1_2:+46754245 Msa0073280:CDS
ATCCTGAAATTTCTGATGCT+GGG 0.385883 1_2:+46756748 Msa0073280:CDS
GGATCAGTGGGAAGGTTGAT+GGG 0.391325 1_2:-46753592 None:intergenic
ACCTCGCCAGCTTTGGCATC+AGG 0.394057 1_2:-46756862 None:intergenic
TGGACGCTTACTGGCGATCT+TGG 0.400624 1_2:+46756451 Msa0073280:CDS
TTGGCGAGATTCATTACATT+GGG 0.406007 1_2:-46759179 None:intergenic
CAAATTTCCCCTAATTGATT+CGG 0.406286 1_2:-46756182 None:intergenic
TTGGATTTGCTTAGTGAGTT+CGG 0.411994 1_2:-46753887 None:intergenic
AAAACAGACCATTAATGATC+AGG 0.419353 1_2:+46756426 Msa0073280:CDS
GTTATAATAAATTAGTGCCT+TGG 0.423596 1_2:+46759020 Msa0073280:exon
GGTTGTTAAGAATTAAGATA+TGG 0.425519 1_2:+46759115 Msa0073280:three_prime_UTR
ACGGGGAAACGTATGGAGTT+AGG 0.429974 1_2:-46753799 None:intergenic
GGGTAATTGTGGCAGGGGTA+TGG 0.436534 1_2:+46756020 Msa0073280:intron
CAAGAAATTTGTAGCAAAAG+AGG 0.438801 1_2:+46756939 Msa0073280:CDS
TAGGGAGAGGTTGGGATCAG+TGG 0.439155 1_2:-46753605 None:intergenic
GATAGCAGGAGTGGCGGATC+AGG 0.441226 1_2:+46754206 Msa0073280:CDS
GAGCGCAATGGTGTCGGCGG+CGG 0.443942 1_2:-46753656 None:intergenic
GGAGAAGACTTTGTCGGAGG+TGG 0.446387 1_2:+46754362 Msa0073280:CDS
AGGCACCACGGGGAAAAGTA+AGG 0.446955 1_2:+46754146 Msa0073280:CDS
CGGAGGAAGTTGATTCAAAC+AGG 0.447453 1_2:-46753636 None:intergenic
CTGTATTCTTCAGGCACCAC+GGG 0.450731 1_2:+46754135 Msa0073280:CDS
AAGAGTTGATCAAGTGCAAC+GGG 0.452222 1_2:+46756518 Msa0073280:CDS
ATCTTACCTTGCATCATAAC+GGG 0.452405 1_2:-46756215 None:intergenic
AACCTCCTCACTGTCACGGC+AGG 0.452817 1_2:-46759072 None:intergenic
TTCAAACAGGAAGGAGGTTA+GGG 0.453577 1_2:-46753623 None:intergenic
CCCTAATTGATTCGGTGGAA+GGG 0.455832 1_2:-46756174 None:intergenic
GAGCGAACAACAAAAGCAAC+TGG 0.456215 1_2:-46756886 None:intergenic
CTGGTGGTGCTGCTCCTCTT+GGG 0.458317 1_2:+46754493 Msa0073280:CDS
TTCATAGCGACGGCGATAGC+AGG 0.458927 1_2:+46754192 Msa0073280:CDS
ACCCCAGCATCAGAAATTTC+AGG 0.460523 1_2:-46756750 None:intergenic
CTCTGCAGATGTCAAAGTTA+TGG 0.460906 1_2:+46759047 Msa0073280:three_prime_UTR
GCGCTCGCTGATGCGCAAAC+GGG 0.461203 1_2:+46753673 Msa0073280:CDS
GCGACGGCGAGGAAGCAGAC+GGG 0.461447 1_2:-46753817 None:intergenic
ATCAGCGAGCGCAATGGTGT+CGG 0.463310 1_2:-46753662 None:intergenic
AACATCGAAGGATTTGGCTT+AGG 0.466436 1_2:+46753955 Msa0073280:CDS
CCCCTAATTGATTCGGTGGA+AGG 0.472230 1_2:-46756175 None:intergenic
AGCGGGAGAATGCGGAGACT+TGG 0.473138 1_2:-46753726 None:intergenic
GTTTGTTGCTCCGCCGGTGA+TGG 0.473291 1_2:+46754407 Msa0073280:CDS
AGGGAGAGGTTGGGATCAGT+GGG 0.473735 1_2:-46753604 None:intergenic
GATACGGTTACAACAAGCTT+AGG 0.480476 1_2:-46753919 None:intergenic
CCTAATTGATTCGGTGGAAG+GGG 0.482338 1_2:-46756173 None:intergenic
TTCCTCGCCGTCGCCGCCAT+AGG 0.482403 1_2:+46753826 Msa0073280:CDS
TCCGCCGGTGATGGTGGAGC+TGG 0.483210 1_2:+46754416 Msa0073280:CDS
GGTGGTGGCAATAGCACCTA+TGG 0.483726 1_2:-46753842 None:intergenic
AGGGAACACGGTGGTGTCCA+TGG 0.486518 1_2:+46754323 Msa0073280:CDS
TGATTTGGAGAAGACTTTGT+CGG 0.488200 1_2:+46754356 Msa0073280:CDS
GGAAGGTTGATGGGTTGCCT+TGG 0.492526 1_2:-46753583 None:intergenic
ACGTCGGATTGTGAAACAAC+CGG 0.492650 1_2:-46754102 None:intergenic
TTTGGCGAGATTCATTACAT+TGG 0.495508 1_2:-46759180 None:intergenic
TCGTCGCTGAAGCAGCTCGC+TGG 0.496351 1_2:+46754474 Msa0073280:CDS
GCATTTGTTTGTTGCTCCGC+CGG 0.499523 1_2:+46754401 Msa0073280:CDS
AATCTTACCTTGCATCATAA+CGG 0.499576 1_2:-46756216 None:intergenic
AACACGGTGGTGTCCATGGC+TGG 0.507282 1_2:+46754327 Msa0073280:CDS
TCGCTGAAGCAGCTCGCTGG+TGG 0.508603 1_2:+46754477 Msa0073280:CDS
CGGAGACTTGGATATTGAGT+TGG 0.508615 1_2:-46753714 None:intergenic
AGTAAGTCTTCGAGTTCAGC+AGG 0.510884 1_2:-46756717 None:intergenic
TGCAGGTTGCACCATACAAA+AGG 0.511744 1_2:+46758899 Msa0073280:intron
AGGTCTCCTGATGCCAAAGC+TGG 0.516200 1_2:+46756856 Msa0073280:intron
ACAATCTGGGATTCTACACT+TGG 0.519700 1_2:-46756131 None:intergenic
GGTTACAACAAGCTTAGGCT+TGG 0.520372 1_2:-46753914 None:intergenic
TCCCGCTCATTGATCAGTCT+CGG 0.520385 1_2:+46753742 Msa0073280:CDS
AGACTTGGATATTGAGTTGG+CGG 0.522319 1_2:-46753711 None:intergenic
TATTGCTTGACGATGAACCT+TGG 0.523876 1_2:+46753989 Msa0073280:CDS
GGAGAGTTGTGTGAGAGCTC+CGG 0.526470 1_2:+46754072 Msa0073280:CDS
CTTTCTTAAAATCTTTCCCG+TGG 0.531023 1_2:-46758962 None:intergenic
AAGGAGGTTAGGGAGAGGTT+GGG 0.532899 1_2:-46753613 None:intergenic
TGTTGCTCCGCCGGTGATGG+TGG 0.535849 1_2:+46754410 Msa0073280:CDS
TCCGAGACTGATCAATGAGC+GGG 0.536005 1_2:-46753743 None:intergenic
AATAGCACCTATGGCGGCGA+CGG 0.536011 1_2:-46753833 None:intergenic
CGACGGCGAGGAAGCAGACG+GGG 0.540564 1_2:-46753816 None:intergenic
GATGCATCACGTGATGGGAT+TGG 0.541122 1_2:+46754272 Msa0073280:CDS
AGAGGTTGGGATCAGTGGGA+AGG 0.542678 1_2:-46753600 None:intergenic
GCTGGTCAAGCGGCGTGAGG+TGG 0.543332 1_2:+46754434 Msa0073280:CDS
TCCTGATGCCAAAGCTGGCG+AGG 0.543786 1_2:+46756861 Msa0073280:CDS
GGTGCCGATGCATCACGTGA+TGG 0.544878 1_2:+46754266 Msa0073280:CDS
AATCCCATCACGTGATGCAT+CGG 0.546519 1_2:-46754270 None:intergenic
GTGCCGATGCATCACGTGAT+GGG 0.546854 1_2:+46754267 Msa0073280:CDS
GACATCTGCAGAGCCTTCCA+AGG 0.548064 1_2:-46759037 None:intergenic
GGCGACGGCGAGGAAGCAGA+CGG 0.550149 1_2:-46753818 None:intergenic
TTGCTTAGTGAGTTCGGAGA+CGG 0.551250 1_2:-46753881 None:intergenic
GAAGCAGACGGGGAAACGTA+TGG 0.553923 1_2:-46753806 None:intergenic
ATTTCCCCTAATTGATTCGG+TGG 0.554045 1_2:-46756179 None:intergenic
TGTTTGCAAACTAACAATCT+GGG 0.557056 1_2:-46756144 None:intergenic
CAGTTGAACCTGAATTCGAA+AGG 0.558487 1_2:-46756097 None:intergenic
CAAATCAAATCTACCAGCCA+TGG 0.559839 1_2:-46754340 None:intergenic
CACCTATGGCGGCGACGGCG+AGG 0.560140 1_2:-46753828 None:intergenic
TTGACCAGCTCCACCATCAC+CGG 0.560201 1_2:-46754420 None:intergenic
GATGTATATGCGCTAGTCCA+AGG 0.561168 1_2:-46754006 None:intergenic
TAATAAATTAGTGCCTTGGA+AGG 0.562627 1_2:+46759024 Msa0073280:exon
AAACAGACCATTAATGATCA+GGG 0.568415 1_2:+46756427 Msa0073280:CDS
TTGCGCATCAGCGAGCGCAA+TGG 0.568556 1_2:-46753668 None:intergenic
GACGGTGTATAATGGACTGC+AGG 0.574429 1_2:-46753863 None:intergenic
TCCTGAAATTTCTGATGCTG+GGG 0.576358 1_2:+46756749 Msa0073280:CDS
TTGGATATTGAGTTGGCGGA+AGG 0.584253 1_2:-46753707 None:intergenic
GGAGCTGGTCAAGCGGCGTG+AGG 0.585465 1_2:+46754431 Msa0073280:CDS
TTGCACCATACAAAAGGTTG+CGG 0.587147 1_2:+46758905 Msa0073280:CDS
AGCGAGCGCAATGGTGTCGG+CGG 0.587907 1_2:-46753659 None:intergenic
AGGGAGTGATGTTGACTCAC+GGG 0.587908 1_2:+46754166 Msa0073280:CDS
TGAACCTGAATTCGAAAGGA+AGG 0.588263 1_2:-46756093 None:intergenic
AGCGACGGCGATAGCAGGAG+TGG 0.594532 1_2:+46754197 Msa0073280:CDS
ACCTCCTCACTGTCACGGCA+GGG 0.594799 1_2:-46759071 None:intergenic
TCTGTATTCTTCAGGCACCA+CGG 0.595773 1_2:+46754134 Msa0073280:CDS
AAAGAGTTGATCAAGTGCAA+CGG 0.595964 1_2:+46756517 Msa0073280:CDS
GATCAATGAGCGGGAGAATG+CGG 0.596525 1_2:-46753734 None:intergenic
GCAGCTGAGGAGAGGGAACA+CGG 0.604601 1_2:+46754311 Msa0073280:CDS
AGACCATTAATGATCAGGGT+TGG 0.605610 1_2:+46756431 Msa0073280:CDS
ACCAGCTCCACCATCACCGG+CGG 0.605994 1_2:-46754417 None:intergenic
TGCATCAAATCTTTCCCAAG+AGG 0.606362 1_2:-46754507 None:intergenic
TAAGCTTGTTGTAACCGTAT+CGG 0.606942 1_2:+46753921 Msa0073280:CDS
TGAAACAACCGGAAACTCGC+CGG 0.607279 1_2:-46754091 None:intergenic
TATACACGCAGCTGAGGAGA+GGG 0.608385 1_2:+46754304 Msa0073280:CDS
GGCACCACGGGGAAAAGTAA+GGG 0.608988 1_2:+46754147 Msa0073280:CDS
GTTGATGGGTTGCCTTGGTG+AGG 0.610223 1_2:-46753578 None:intergenic
CGAGGACCCGTTATGATGCA+AGG 0.615447 1_2:+46756209 Msa0073280:CDS
AAAAGGACAACTATTTGTCG+TGG 0.616636 1_2:+46756486 Msa0073280:CDS
TTTCTTAAAATCTTTCCCGT+GGG 0.617584 1_2:-46758961 None:intergenic
GGAAGTTGATTCAAACAGGA+AGG 0.618512 1_2:-46753632 None:intergenic
AAGGGAGTGATGTTGACTCA+CGG 0.619938 1_2:+46754165 Msa0073280:CDS
TGATATTATACACGCAGCTG+AGG 0.621129 1_2:+46754298 Msa0073280:CDS
TTATACACGCAGCTGAGGAG+AGG 0.622735 1_2:+46754303 Msa0073280:CDS
GATGCATCGGCACCAAACAA+AGG 0.622737 1_2:-46754257 None:intergenic
AGTTGATTCAAACAGGAAGG+AGG 0.623392 1_2:-46753629 None:intergenic
ACAGGAAGGAGGTTAGGGAG+AGG 0.624175 1_2:-46753618 None:intergenic
AAGATTCCAAAGTCACCCAC+GGG 0.626293 1_2:+46758946 Msa0073280:CDS
AAGCGGCGTGAGGTGGTGAG+CGG 0.631498 1_2:+46754441 Msa0073280:CDS
TGATGGTGGAGCTGGTCAAG+CGG 0.634922 1_2:+46754424 Msa0073280:CDS
GAAGATTCCAAAGTCACCCA+CGG 0.635112 1_2:+46758945 Msa0073280:CDS
GTATAATGGACTGCAGGTGG+TGG 0.636257 1_2:-46753857 None:intergenic
GCATCACGTGATGGGATTGG+CGG 0.641987 1_2:+46754275 Msa0073280:CDS
GGTGGCAATAGCACCTATGG+CGG 0.644263 1_2:-46753839 None:intergenic
ATTAAGATATGGTGTTACCC+AGG 0.646176 1_2:+46759126 Msa0073280:three_prime_UTR
TTTGGAGAAGACTTTGTCGG+AGG 0.654309 1_2:+46754359 Msa0073280:CDS
ATCAGTCTCGGAATCAAACG+AGG 0.655839 1_2:+46753754 Msa0073280:CDS
TTCCGAGACTGATCAATGAG+CGG 0.656023 1_2:-46753744 None:intergenic
GACGGCGATAGCAGGAGTGG+CGG 0.658797 1_2:+46754200 Msa0073280:CDS
TCACGGGAACTTCATAGCGA+CGG 0.662847 1_2:+46754182 Msa0073280:CDS
GGTTGTTTCACAATCCGACG+TGG 0.666099 1_2:+46754104 Msa0073280:CDS
ACACAACCTCCTCACTGTCA+CGG 0.673670 1_2:-46759076 None:intergenic
TCCCTGCCGTGACAGTGAGG+AGG 0.679216 1_2:+46759070 Msa0073280:three_prime_UTR
ACTAGCGCATATACATCACA+CGG 0.680527 1_2:+46754012 Msa0073280:CDS
TGGTCCCTGCCGTGACAGTG+AGG 0.684445 1_2:+46759067 Msa0073280:three_prime_UTR
TTAGGGGAAATTTGGCTACG+AGG 0.686700 1_2:+46756191 Msa0073280:CDS
TGTTTCACAATCCGACGTGG+CGG 0.688159 1_2:+46754107 Msa0073280:CDS
ATACAGAATAACCGCCACGT+CGG 0.702977 1_2:-46754118 None:intergenic
TGTATTCTTCAGGCACCACG+GGG 0.712806 1_2:+46754136 Msa0073280:CDS
CGATGACGTATTCCTCACCA+AGG 0.714446 1_2:+46753566 Msa0073280:CDS
TATGGCATGACTGAAGCATG+CGG 0.715652 1_2:+46756038 Msa0073280:CDS
CCTTCCACCGAATCAATTAG+GGG 0.722238 1_2:+46756175 Msa0073280:CDS
TGTGTGACTACAGTTAACAA+TGG 0.722319 1_2:+46759094 Msa0073280:three_prime_UTR
GGTGTATAATGGACTGCAGG+TGG 0.750758 1_2:-46753860 None:intergenic
CTAGCGCATATACATCACAC+GGG 0.755505 1_2:+46754013 Msa0073280:CDS
GCTGAGGAGAGGGAACACGG+TGG 0.809300 1_2:+46754314 Msa0073280:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAAAATATAATTTTTTAT+AGG - chr1_2:46757949-46757968 None:intergenic 0.0%
!!! TAAAAAATTATATTTTTTTT+AGG + chr1_2:46757950-46757969 Msa0073280:intron 0.0%
!!! AAAAAATTATATTTTTTTTA+GGG + chr1_2:46757951-46757970 Msa0073280:intron 0.0%
!!! TTGTATAAAATAATTACTTT+TGG + chr1_2:46756984-46757003 Msa0073280:intron 10.0%
!! TATAAACAAGAATTAAAATA+TGG + chr1_2:46757237-46757256 Msa0073280:intron 10.0%
!!! AAATCTAATATTAAAGTTTT+GGG + chr1_2:46758032-46758051 Msa0073280:intron 10.0%
!! TATGATTGAATGTATTATAT+TGG + chr1_2:46755347-46755366 Msa0073280:intron 15.0%
!!! ATTTTTAAATTGTTGATTAC+TGG + chr1_2:46755467-46755486 Msa0073280:intron 15.0%
!! TATGATTGAATGTATTATAT+TGG + chr1_2:46755347-46755366 Msa0073280:intron 15.0%
!! ATTTCATATCTTAATGATAT+TGG + chr1_2:46755943-46755962 Msa0073280:intron 15.0%
!!! AAAAAATGTGAATTTAGTTT+TGG + chr1_2:46757136-46757155 Msa0073280:intron 15.0%
!!! ATATCATTCACTTTTTAATT+AGG - chr1_2:46757339-46757358 None:intergenic 15.0%
!! ATTATATATCTTCATAGAAT+TGG - chr1_2:46757621-46757640 None:intergenic 15.0%
!!! AATTATATTTTTTTTAGGGT+TGG + chr1_2:46757955-46757974 Msa0073280:intron 15.0%
!!! ATTATATTTTTTTTAGGGTT+GGG + chr1_2:46757956-46757975 Msa0073280:intron 15.0%
!!! CAAATCTAATATTAAAGTTT+TGG + chr1_2:46758031-46758050 Msa0073280:intron 15.0%
!!! TCAAATGTGATTTTTAATTT+GGG - chr1_2:46758164-46758183 None:intergenic 15.0%
!!! ATCAAATGTGATTTTTAATT+TGG - chr1_2:46758165-46758184 None:intergenic 15.0%
!!! AAAAAAATATGTGATTAGTT+TGG - chr1_2:46758714-46758733 None:intergenic 15.0%
!!! ATCACATATTTTTTTATCTT+AGG + chr1_2:46758719-46758738 Msa0073280:intron 15.0%
!! ATCAAAAATATTCAAACACA+AGG + chr1_2:46754657-46754676 Msa0073280:intron 20.0%
!!! CATTTTGAATATGTTCAAAA+TGG + chr1_2:46755013-46755032 Msa0073280:intron 20.0%
!! ATCTTAGACTTTCATATAAA+TGG - chr1_2:46755258-46755277 None:intergenic 20.0%
!! TTTATTAAATTATCCAACCT+AGG + chr1_2:46755311-46755330 Msa0073280:intron 20.0%
!!! ATTATATTGGAAGCATAATA+TGG + chr1_2:46755360-46755379 Msa0073280:intron 20.0%
!! TAATATGGAAGTAAAAGATA+AGG + chr1_2:46755375-46755394 Msa0073280:intron 20.0%
!! AATATGGAAGTAAAAGATAA+GGG + chr1_2:46755376-46755395 Msa0073280:intron 20.0%
!!! TTATCTTTTGGAAAATTCTA+TGG - chr1_2:46755803-46755822 None:intergenic 20.0%
!!! ATCATATCACTATTATCTTT+TGG - chr1_2:46755815-46755834 None:intergenic 20.0%
!!! ATTATATTGGAAGCATAATA+TGG + chr1_2:46755360-46755379 Msa0073280:intron 20.0%
!!! CTTACATAACATATTTTTTC+AGG + chr1_2:46756379-46756398 Msa0073280:intron 20.0%
!! CTAGATAAAAATATGACTTA+CGG - chr1_2:46756780-46756799 None:intergenic 20.0%
!! AAATGATAAACTAATCAAGA+TGG + chr1_2:46757029-46757048 Msa0073280:intron 20.0%
!! GTTGTAACAATAAAGTAAAA+GGG - chr1_2:46757201-46757220 None:intergenic 20.0%
!! AGTTGTAACAATAAAGTAAA+AGG - chr1_2:46757202-46757221 None:intergenic 20.0%
!!! TTTTGAGATCAAAATTTTGA+TGG - chr1_2:46757269-46757288 None:intergenic 20.0%
!!! TTATATTTTTTTTAGGGTTG+GGG + chr1_2:46757957-46757976 Msa0073280:intron 20.0%
!!! TGATTGATTTTTCCTTAATA+TGG + chr1_2:46758081-46758100 Msa0073280:intron 20.0%
!!! TTCTTTTCATGATGTTAATT+TGG + chr1_2:46758469-46758488 Msa0073280:intron 20.0%
!! ACCTGAATGATTTCAATTTT+GGG - chr1_2:46754552-46754571 None:intergenic 25.0%
!! TACCTGAATGATTTCAATTT+TGG - chr1_2:46754553-46754572 None:intergenic 25.0%
! TGAATATGTTCAAAATGGAT+TGG + chr1_2:46755018-46755037 Msa0073280:intron 25.0%
! AAAGCTAAATTGACAAATCA+TGG + chr1_2:46755283-46755302 Msa0073280:intron 25.0%
!! TACAAGTACTATTTTATCGT+TGG + chr1_2:46755539-46755558 Msa0073280:intron 25.0%
!!! AGTCATAAGAATGACTTTTT+TGG - chr1_2:46755777-46755796 None:intergenic 25.0%
! GTAATGAATTGTTTGTGATA+TGG + chr1_2:46755993-46756012 Msa0073280:intron 25.0%
! AATTGTTTGTGATATGGTAT+GGG + chr1_2:46755999-46756018 Msa0073280:intron 25.0%
!!! TGTTTCTTTTGAAAATCCAA+AGG + chr1_2:46756064-46756083 Msa0073280:CDS 25.0%
! GCAAATTTATAACGATTCAT+CGG + chr1_2:46756250-46756269 Msa0073280:intron 25.0%
! TAAGTTTCATGCAAACTAAT+AGG - chr1_2:46756339-46756358 None:intergenic 25.0%
! ACCTAACACAAAATCATATA+GGG - chr1_2:46756580-46756599 None:intergenic 25.0%
! AACCTAACACAAAATCATAT+AGG - chr1_2:46756581-46756600 None:intergenic 25.0%
!! AAACAAAGAGTCATATTTTG+TGG + chr1_2:46756634-46756653 Msa0073280:intron 25.0%
!!! ACTATTTTATTTACCATCTC+AGG + chr1_2:46756836-46756855 Msa0073280:intron 25.0%
!!! TACTTTTGGAATGTTTGTTA+CGG + chr1_2:46756998-46757017 Msa0073280:intron 25.0%
!! TGGTCTAAAAAATGTTTTCA+AGG + chr1_2:46757049-46757068 Msa0073280:intron 25.0%
!! CTCAAACTTTTCTTTTTGAA+GGG + chr1_2:46757369-46757388 Msa0073280:intron 25.0%
! AGTGAAAAACGATAATTAGA+TGG - chr1_2:46757445-46757464 None:intergenic 25.0%
! TACGAATACTGAATTACAAA+AGG + chr1_2:46757786-46757805 Msa0073280:intron 25.0%
!!! TTAAAGTTTTGGGTAAAGAT+AGG + chr1_2:46758042-46758061 Msa0073280:intron 25.0%
!!! TAAAGTTTTGGGTAAAGATA+GGG + chr1_2:46758043-46758062 Msa0073280:intron 25.0%
! ATATGAGATCATCCATATTA+AGG - chr1_2:46758096-46758115 None:intergenic 25.0%
! TAATATGGATGATCTCATAT+AGG + chr1_2:46758096-46758115 Msa0073280:intron 25.0%
! AATATGGATGATCTCATATA+GGG + chr1_2:46758097-46758116 Msa0073280:intron 25.0%
!!! ATGTGATTTTTAATTTGGGT+TGG - chr1_2:46758160-46758179 None:intergenic 25.0%
!!! CAATTGAATTTTTGAGTACT+AGG - chr1_2:46758273-46758292 None:intergenic 25.0%
! CTAGTACTCAAAAATTCAAT+TGG + chr1_2:46758271-46758290 Msa0073280:intron 25.0%
! AATTTAATGACTTACTGAAG+AGG + chr1_2:46758439-46758458 Msa0073280:intron 25.0%
! ATTTAATGACTTACTGAAGA+GGG + chr1_2:46758440-46758459 Msa0073280:intron 25.0%
! GATTAAGAATGTTTGTAGTA+CGG - chr1_2:46758781-46758800 None:intergenic 25.0%
! GACAATATTGTTTGATTATG+AGG - chr1_2:46758815-46758834 None:intergenic 25.0%
! TAGAAAATGAAAGAGTTTGA+AGG + chr1_2:46758836-46758855 Msa0073280:intron 25.0%
! GAGGAAATAAACTAATCAAT+AGG - chr1_2:46758878-46758897 None:intergenic 25.0%
! GTTATAATAAATTAGTGCCT+TGG + chr1_2:46759020-46759039 Msa0073280:exon 25.0%
! GGTTGTTAAGAATTAAGATA+TGG + chr1_2:46759115-46759134 Msa0073280:three_prime_UTR 25.0%
TTCAAAAACATCGAAGGATT+TGG + chr1_2:46753949-46753968 Msa0073280:CDS 30.0%
GAAATCATTCAGGTAAAGAA+AGG + chr1_2:46754558-46754577 Msa0073280:intron 30.0%
TTTCAACTTGAGACTTCAAT+TGG + chr1_2:46754925-46754944 Msa0073280:intron 30.0%
CTCTTGCATAAGAAAAAATC+TGG + chr1_2:46755102-46755121 Msa0073280:intron 30.0%
AGAAAAAATCTGGTTGAAAG+AGG + chr1_2:46755112-46755131 Msa0073280:intron 30.0%
! ATTGACTCATTGCTATACAA+CGG + chr1_2:46755185-46755204 Msa0073280:intron 30.0%
CTAAATTGACAAATCATGGA+GGG + chr1_2:46755287-46755306 Msa0073280:intron 30.0%
! CATATCACTATTTTCATCCT+AGG - chr1_2:46755331-46755350 None:intergenic 30.0%
TCTTAAGTGTTACACTTTGT+GGG + chr1_2:46755596-46755615 Msa0073280:intron 30.0%
! GATGAATTGATGATACTATG+AGG + chr1_2:46755676-46755695 Msa0073280:intron 30.0%
GAATTGTTTGTGATATGGTA+TGG + chr1_2:46755998-46756017 Msa0073280:intron 30.0%
ATTGTTTGTGATATGGTATG+GGG + chr1_2:46756000-46756019 Msa0073280:intron 30.0%
!! TCTTTTGAAAATCCAAAGGA+AGG + chr1_2:46756068-46756087 Msa0073280:CDS 30.0%
TGTTTGCAAACTAACAATCT+GGG - chr1_2:46756147-46756166 None:intergenic 30.0%
ATGTTTGCAAACTAACAATC+TGG - chr1_2:46756148-46756167 None:intergenic 30.0%
CAAATTTCCCCTAATTGATT+CGG - chr1_2:46756185-46756204 None:intergenic 30.0%
AATCTTACCTTGCATCATAA+CGG - chr1_2:46756219-46756238 None:intergenic 30.0%
AAAACAGACCATTAATGATC+AGG + chr1_2:46756426-46756445 Msa0073280:CDS 30.0%
AAACAGACCATTAATGATCA+GGG + chr1_2:46756427-46756446 Msa0073280:CDS 30.0%
!!! CTTGGATATTTTGACGAAAA+AGG + chr1_2:46756469-46756488 Msa0073280:CDS 30.0%
! GGGAAACAGTTTTCTTATAA+AGG - chr1_2:46756560-46756579 None:intergenic 30.0%
! TCCCTATATGATTTTGTGTT+AGG + chr1_2:46756576-46756595 Msa0073280:intron 30.0%
TTAGGTTCAAATACTTTCTC+TGG + chr1_2:46756594-46756613 Msa0073280:intron 30.0%
CCTAATAACGAAAATGTGTA+TGG - chr1_2:46756692-46756711 None:intergenic 30.0%
! CCATACACATTTTCGTTATT+AGG + chr1_2:46756689-46756708 Msa0073280:intron 30.0%
! TACACATTTTCGTTATTAGG+TGG + chr1_2:46756692-46756711 Msa0073280:intron 30.0%
ATAGTGTAAACATGCATAAG+AGG - chr1_2:46756821-46756840 None:intergenic 30.0%
CAAGAAATTTGTAGCAAAAG+AGG + chr1_2:46756939-46756958 Msa0073280:CDS 30.0%
AAGAGAGAAGTTATATCCAA+AGG - chr1_2:46757083-46757102 None:intergenic 30.0%
CCTTCAAAAAGAAAAGTTTG+AGG - chr1_2:46757371-46757390 None:intergenic 30.0%
! CCTCAAACTTTTCTTTTTGA+AGG + chr1_2:46757368-46757387 Msa0073280:intron 30.0%
AAGTTAGAAGATTGTTACCA+TGG + chr1_2:46757659-46757678 Msa0073280:intron 30.0%
ATATGGATGATCTCATATAG+GGG + chr1_2:46758098-46758117 Msa0073280:intron 30.0%
!!! TAGTTTTTGTTGGTTTGGTT+TGG - chr1_2:46758128-46758147 None:intergenic 30.0%
!! GTTTGTAGTTTTTGTTGGTT+TGG - chr1_2:46758133-46758152 None:intergenic 30.0%
! GTTCAGTTTGTAGTTTTTGT+TGG - chr1_2:46758138-46758157 None:intergenic 30.0%
!!! GAATTTTTGAGTACTAGGTT+AGG - chr1_2:46758268-46758287 None:intergenic 30.0%
! GTTAATTTGGTCTATGTTGA+TGG + chr1_2:46758482-46758501 Msa0073280:intron 30.0%
AAATCAAACCAATGTGGTTT+GGG - chr1_2:46758660-46758679 None:intergenic 30.0%
!!! ACGGTTTAGTTTGGTTTTTA+AGG - chr1_2:46758762-46758781 None:intergenic 30.0%
AAATGAAAGAGTTTGAAGGT+TGG + chr1_2:46758840-46758859 Msa0073280:intron 30.0%
! ATTAGTTTATTTCCTCATGC+AGG + chr1_2:46758882-46758901 Msa0073280:intron 30.0%
TTTCTTAAAATCTTTCCCGT+GGG - chr1_2:46758964-46758983 None:intergenic 30.0%
TAATAAATTAGTGCCTTGGA+AGG + chr1_2:46759024-46759043 Msa0073280:exon 30.0%
!! TAGAAAAAGAAAGTACTCCT+GGG - chr1_2:46759146-46759165 None:intergenic 30.0%
!!! TGAATCGCTTCACTTTTTTT+TGG - chr1_2:46759201-46759220 None:intergenic 30.0%
! TTGGATTTGCTTAGTGAGTT+CGG - chr1_2:46753890-46753909 None:intergenic 35.0%
!! TAAGCTTGTTGTAACCGTAT+CGG + chr1_2:46753921-46753940 Msa0073280:CDS 35.0%
!! GTTTTTGAAGAGTTCCGATA+CGG - chr1_2:46753938-46753957 None:intergenic 35.0%
GAACTCTTCAAAAACATCGA+AGG + chr1_2:46753943-46753962 Msa0073280:CDS 35.0%
ACGGGTATGTTTCAAATGTT+TGG + chr1_2:46754031-46754050 Msa0073280:CDS 35.0%
GAAGAATGTGTTCCTTTGTT+TGG + chr1_2:46754245-46754264 Msa0073280:CDS 35.0%
! TGATTTGGAGAAGACTTTGT+CGG + chr1_2:46754356-46754375 Msa0073280:CDS 35.0%
GCCCAAAATTGAAATCATTC+AGG + chr1_2:46754548-46754567 Msa0073280:CDS 35.0%
!! TCAAAATGGATTGGTCCAAA+TGG + chr1_2:46755027-46755046 Msa0073280:intron 35.0%
! AACCATTGACTACATGCTTA+AGG - chr1_2:46755072-46755091 None:intergenic 35.0%
GCTAAATTGACAAATCATGG+AGG + chr1_2:46755286-46755305 Msa0073280:intron 35.0%
! TCACTATTTTCATCCTAGGT+TGG - chr1_2:46755327-46755346 None:intergenic 35.0%
AAAAGATAAGGGAGCTTCTA+CGG + chr1_2:46755387-46755406 Msa0073280:intron 35.0%
TAGTAATGCTTGCAACATCT+TGG + chr1_2:46755513-46755532 Msa0073280:intron 35.0%
GTCTTAAGTGTTACACTTTG+TGG + chr1_2:46755595-46755614 Msa0073280:intron 35.0%
CTTAAGTGTTACACTTTGTG+GGG + chr1_2:46755597-46755616 Msa0073280:intron 35.0%
TGCTACGCTTATAAAAAGGT+AGG + chr1_2:46755620-46755639 Msa0073280:intron 35.0%
TGATGTCATTGTACAAACAG+TGG + chr1_2:46755709-46755728 Msa0073280:intron 35.0%
GATGTCATTGTACAAACAGT+GGG + chr1_2:46755710-46755729 Msa0073280:intron 35.0%
ATGTCATTGTACAAACAGTG+GGG + chr1_2:46755711-46755730 Msa0073280:intron 35.0%
CGAATCAATTAGGGGAAATT+TGG + chr1_2:46756183-46756202 Msa0073280:CDS 35.0%
ATCTTACCTTGCATCATAAC+GGG - chr1_2:46756218-46756237 None:intergenic 35.0%
AAAAGGACAACTATTTGTCG+TGG + chr1_2:46756486-46756505 Msa0073280:CDS 35.0%
! AAAGAGTTGATCAAGTGCAA+CGG + chr1_2:46756517-46756536 Msa0073280:CDS 35.0%
AAATACTTTCTCTGGTCTCT+CGG + chr1_2:46756602-46756621 Msa0073280:intron 35.0%
ATCCTGAAATTTCTGATGCT+GGG + chr1_2:46756748-46756767 Msa0073280:CDS 35.0%
AGATAAGATGACTATGTGTG+AGG - chr1_2:46757402-46757421 None:intergenic 35.0%
AGAGATTGTTGTGACATATG+AGG + chr1_2:46757500-46757519 Msa0073280:intron 35.0%
GAGATTGTTGTGACATATGA+GGG + chr1_2:46757501-46757520 Msa0073280:intron 35.0%
AGATTGTTGTGACATATGAG+GGG + chr1_2:46757502-46757521 Msa0073280:intron 35.0%
AGTAGAAGTTCCATATTCGA+TGG + chr1_2:46757525-46757544 Msa0073280:intron 35.0%
!! GATCACTTTTCCATCGAATA+TGG - chr1_2:46757538-46757557 None:intergenic 35.0%
TTAGAAGATTGTTACCATGG+TGG + chr1_2:46757662-46757681 Msa0073280:intron 35.0%
! TCTTTTAGTCAACCAAGCAT+GGG + chr1_2:46757693-46757712 Msa0073280:intron 35.0%
AAACAAAACCCACATCTATC+AGG - chr1_2:46757745-46757764 None:intergenic 35.0%
AATTGTATAGTGTGCTCTAG+TGG - chr1_2:46757864-46757883 None:intergenic 35.0%
!!! TATTTTTTTTAGGGTTGGGG+TGG + chr1_2:46757960-46757979 Msa0073280:intron 35.0%
!!! ATTTTTTTTAGGGTTGGGGT+GGG + chr1_2:46757961-46757980 Msa0073280:intron 35.0%
! TATGTTGATGGATACATCGT+TGG + chr1_2:46758494-46758513 Msa0073280:intron 35.0%
CAAATCAAACCAATGTGGTT+TGG - chr1_2:46758661-46758680 None:intergenic 35.0%
!! CAAACCACATTGGTTTGATT+TGG + chr1_2:46758659-46758678 Msa0073280:intron 35.0%
GTTTGTAGTACGGTTTAGTT+TGG - chr1_2:46758771-46758790 None:intergenic 35.0%
CTTTCTTAAAATCTTTCCCG+TGG - chr1_2:46758965-46758984 None:intergenic 35.0%
!! CACGGGAAAGATTTTAAGAA+AGG + chr1_2:46758963-46758982 Msa0073280:CDS 35.0%
TGTGTGACTACAGTTAACAA+TGG + chr1_2:46759094-46759113 Msa0073280:three_prime_UTR 35.0%
!! ATTAAGATATGGTGTTACCC+AGG + chr1_2:46759126-46759145 Msa0073280:three_prime_UTR 35.0%
!! CTAGAAAAAGAAAGTACTCC+TGG - chr1_2:46759147-46759166 None:intergenic 35.0%
TTGGCGAGATTCATTACATT+GGG - chr1_2:46759182-46759201 None:intergenic 35.0%
TTTGGCGAGATTCATTACAT+TGG - chr1_2:46759183-46759202 None:intergenic 35.0%
! AGGAATACGTCATCGTTTTG+AGG - chr1_2:46753561-46753580 None:intergenic 40.0%
TTCAAACAGGAAGGAGGTTA+GGG - chr1_2:46753626-46753645 None:intergenic 40.0%
ATTCAAACAGGAAGGAGGTT+AGG - chr1_2:46753627-46753646 None:intergenic 40.0%
! AGTTGATTCAAACAGGAAGG+AGG - chr1_2:46753632-46753651 None:intergenic 40.0%
! GGAAGTTGATTCAAACAGGA+AGG - chr1_2:46753635-46753654 None:intergenic 40.0%
!! AGACTTGGATATTGAGTTGG+CGG - chr1_2:46753714-46753733 None:intergenic 40.0%
GATACGGTTACAACAAGCTT+AGG - chr1_2:46753922-46753941 None:intergenic 40.0%
! AACATCGAAGGATTTGGCTT+AGG + chr1_2:46753955-46753974 Msa0073280:CDS 40.0%
TATTGCTTGACGATGAACCT+TGG + chr1_2:46753989-46754008 Msa0073280:CDS 40.0%
ACTAGCGCATATACATCACA+CGG + chr1_2:46754012-46754031 Msa0073280:CDS 40.0%
!!! TGGTGCTACGAAGATCTTTT+CGG + chr1_2:46754051-46754070 Msa0073280:CDS 40.0%
GCGGTTATTCTGTATTCTTC+AGG + chr1_2:46754126-46754145 Msa0073280:CDS 40.0%
TGATATTATACACGCAGCTG+AGG + chr1_2:46754298-46754317 Msa0073280:CDS 40.0%
CAAATCAAATCTACCAGCCA+TGG - chr1_2:46754343-46754362 None:intergenic 40.0%
CATGGCTGGTAGATTTGATT+TGG + chr1_2:46754341-46754360 Msa0073280:CDS 40.0%
TGCATCAAATCTTTCCCAAG+AGG - chr1_2:46754510-46754529 None:intergenic 40.0%
AGACTTCAATTGGACGATCA+CGG + chr1_2:46754935-46754954 Msa0073280:intron 40.0%
!! ATGGATTGGTCCAAATGGTA+AGG + chr1_2:46755032-46755051 Msa0073280:intron 40.0%
!! TGGATTGGTCCAAATGGTAA+GGG + chr1_2:46755033-46755052 Msa0073280:intron 40.0%
ATTGACTACATGCTTAAGGC+CGG - chr1_2:46755068-46755087 None:intergenic 40.0%
AGGATGTTGTGGGATACTTA+AGG - chr1_2:46755146-46755165 None:intergenic 40.0%
GATATGGTATGGGGTAATTG+TGG + chr1_2:46756009-46756028 Msa0073280:intron 40.0%
TGAACCTGAATTCGAAAGGA+AGG - chr1_2:46756096-46756115 None:intergenic 40.0%
CAGTTGAACCTGAATTCGAA+AGG - chr1_2:46756100-46756119 None:intergenic 40.0%
! CTTTCGAATTCAGGTTCAAC+TGG + chr1_2:46756098-46756117 Msa0073280:CDS 40.0%
! ACAATCTGGGATTCTACACT+TGG - chr1_2:46756134-46756153 None:intergenic 40.0%
!! ATTTCCCCTAATTGATTCGG+TGG - chr1_2:46756182-46756201 None:intergenic 40.0%
!! ATGGTCTGTTTTGTTGCTTC+TGG - chr1_2:46756418-46756437 None:intergenic 40.0%
AGACCATTAATGATCAGGGT+TGG + chr1_2:46756431-46756450 Msa0073280:CDS 40.0%
! AAGAGTTGATCAAGTGCAAC+GGG + chr1_2:46756518-46756537 Msa0073280:CDS 40.0%
CATCCTGAAATTTCTGATGC+TGG + chr1_2:46756747-46756766 Msa0073280:CDS 40.0%
TCCTGAAATTTCTGATGCTG+GGG + chr1_2:46756749-46756768 Msa0073280:CDS 40.0%
TTTCAAGGAGAAGCTACCTT+TGG + chr1_2:46757064-46757083 Msa0073280:intron 40.0%
ATAAGTGAGATGACCAGTGA+CGG + chr1_2:46757570-46757589 Msa0073280:intron 40.0%
!! ATTATTTCTAGCTCCGTCAC+TGG - chr1_2:46757586-46757605 None:intergenic 40.0%
GGAGCTAGAAATAATTCCCA+GGG + chr1_2:46757591-46757610 Msa0073280:intron 40.0%
CTAGAAATAATTCCCAGGGT+GGG + chr1_2:46757595-46757614 Msa0073280:intron 40.0%
! GTCTTTTAGTCAACCAAGCA+TGG + chr1_2:46757692-46757711 Msa0073280:intron 40.0%
ACATCTATCAGGATTCGAAC+CGG - chr1_2:46757734-46757753 None:intergenic 40.0%
GTTCGAATCCTGATAGATGT+GGG + chr1_2:46757734-46757753 Msa0073280:intron 40.0%
CTAACAGAAGGCTTACTTAC+TGG + chr1_2:46757826-46757845 Msa0073280:intron 40.0%
TAGATTTGAGTCATCTCCAG+TGG - chr1_2:46758019-46758038 None:intergenic 40.0%
TTTGACTCAATCGCACGATT+TGG + chr1_2:46758205-46758224 Msa0073280:intron 40.0%
CGAACCAAATCAAACCAATG+TGG - chr1_2:46758666-46758685 None:intergenic 40.0%
TTGCACCATACAAAAGGTTG+CGG + chr1_2:46758905-46758924 Msa0073280:CDS 40.0%
CTCTGCAGATGTCAAAGTTA+TGG + chr1_2:46759047-46759066 Msa0073280:three_prime_UTR 40.0%
! CGGAGGAAGTTGATTCAAAC+AGG - chr1_2:46753639-46753658 None:intergenic 45.0%
!! TTGGATATTGAGTTGGCGGA+AGG - chr1_2:46753710-46753729 None:intergenic 45.0%
CGGAGACTTGGATATTGAGT+TGG - chr1_2:46753717-46753736 None:intergenic 45.0%
TTCCGAGACTGATCAATGAG+CGG - chr1_2:46753747-46753766 None:intergenic 45.0%
ATCAGTCTCGGAATCAAACG+AGG + chr1_2:46753754-46753773 Msa0073280:CDS 45.0%
AGTTCGGAGACGGTGTATAA+TGG - chr1_2:46753874-46753893 None:intergenic 45.0%
TTGCTTAGTGAGTTCGGAGA+CGG - chr1_2:46753884-46753903 None:intergenic 45.0%
GGTTACAACAAGCTTAGGCT+TGG - chr1_2:46753917-46753936 None:intergenic 45.0%
GATGTATATGCGCTAGTCCA+AGG - chr1_2:46754009-46754028 None:intergenic 45.0%
CTAGCGCATATACATCACAC+GGG + chr1_2:46754013-46754032 Msa0073280:CDS 45.0%
ACGTCGGATTGTGAAACAAC+CGG - chr1_2:46754105-46754124 None:intergenic 45.0%
ATACAGAATAACCGCCACGT+CGG - chr1_2:46754121-46754140 None:intergenic 45.0%
TCTGTATTCTTCAGGCACCA+CGG + chr1_2:46754134-46754153 Msa0073280:CDS 45.0%
!! AAGGGAGTGATGTTGACTCA+CGG + chr1_2:46754165-46754184 Msa0073280:CDS 45.0%
AATCCCATCACGTGATGCAT+CGG - chr1_2:46754273-46754292 None:intergenic 45.0%
TTTGGAGAAGACTTTGTCGG+AGG + chr1_2:46754359-46754378 Msa0073280:CDS 45.0%
CTTGTGACGGTAGAGAATTC+GGG - chr1_2:46754826-46754845 None:intergenic 45.0%
GCTTGTGACGGTAGAGAATT+CGG - chr1_2:46754827-46754846 None:intergenic 45.0%
CACGGATTCTTGACTTTGTG+CGG + chr1_2:46754953-46754972 Msa0073280:intron 45.0%
!! GGATTGGTCCAAATGGTAAG+GGG + chr1_2:46755034-46755053 Msa0073280:intron 45.0%
GTCCAAATGGTAAGGGGTTT+GGG + chr1_2:46755040-46755059 Msa0073280:intron 45.0%
GGCCTTAAGCATGTAGTCAA+TGG + chr1_2:46755067-46755086 Msa0073280:intron 45.0%
TGACTAATCTCCATCGAGTG+AGG - chr1_2:46755166-46755185 None:intergenic 45.0%
GACTCATTGCTATACAACGG+TGG + chr1_2:46755188-46755207 Msa0073280:intron 45.0%
! GGGGTGCTACGCTTATAAAA+AGG + chr1_2:46755616-46755635 Msa0073280:intron 45.0%
TATGGCATGACTGAAGCATG+CGG + chr1_2:46756038-46756057 Msa0073280:CDS 45.0%
!! CCTAATTGATTCGGTGGAAG+GGG - chr1_2:46756176-46756195 None:intergenic 45.0%
!! CCCTAATTGATTCGGTGGAA+GGG - chr1_2:46756177-46756196 None:intergenic 45.0%
CCCTTCCACCGAATCAATTA+GGG + chr1_2:46756174-46756193 Msa0073280:CDS 45.0%
CCTTCCACCGAATCAATTAG+GGG + chr1_2:46756175-46756194 Msa0073280:CDS 45.0%
TTAGGGGAAATTTGGCTACG+AGG + chr1_2:46756191-46756210 Msa0073280:CDS 45.0%
CGTCCAACCCTGATCATTAA+TGG - chr1_2:46756437-46756456 None:intergenic 45.0%
! AGTAAGTCTTCGAGTTCAGC+AGG - chr1_2:46756720-46756739 None:intergenic 45.0%
ACCCCAGCATCAGAAATTTC+AGG - chr1_2:46756753-46756772 None:intergenic 45.0%
GAGCGAACAACAAAAGCAAC+TGG - chr1_2:46756889-46756908 None:intergenic 45.0%
CGGAGCTAGAAATAATTCCC+AGG + chr1_2:46757590-46757609 Msa0073280:intron 45.0%
GCTAGAAATAATTCCCAGGG+TGG + chr1_2:46757594-46757613 Msa0073280:intron 45.0%
AGATTGTTACCATGGTGGCA+AGG + chr1_2:46757667-46757686 Msa0073280:intron 45.0%
AAAAGACTTCCTTGCCACCA+TGG - chr1_2:46757679-46757698 None:intergenic 45.0%
GGTTCGAATCCTGATAGATG+TGG + chr1_2:46757733-46757752 Msa0073280:intron 45.0%
GAATTACAAAAGGTCCACGC+AGG + chr1_2:46757796-46757815 Msa0073280:intron 45.0%
TATAGTGTGCTCTAGTGGCA+AGG - chr1_2:46757859-46757878 None:intergenic 45.0%
! GGTTGGATTGTTGCGGTTTT+TGG - chr1_2:46758635-46758654 None:intergenic 45.0%
!! TTGGGTTGGTTGGATTGTTG+CGG - chr1_2:46758642-46758661 None:intergenic 45.0%
! CAAACCAATGTGGTTTGGGT+TGG - chr1_2:46758656-46758675 None:intergenic 45.0%
TGCAGGTTGCACCATACAAA+AGG + chr1_2:46758899-46758918 Msa0073280:intron 45.0%
GAAGATTCCAAAGTCACCCA+CGG + chr1_2:46758945-46758964 Msa0073280:CDS 45.0%
AAGATTCCAAAGTCACCCAC+GGG + chr1_2:46758946-46758965 Msa0073280:CDS 45.0%
CGATGACGTATTCCTCACCA+AGG + chr1_2:46753566-46753585 Msa0073280:CDS 50.0%
! GGATCAGTGGGAAGGTTGAT+GGG - chr1_2:46753595-46753614 None:intergenic 50.0%
AAGGAGGTTAGGGAGAGGTT+GGG - chr1_2:46753616-46753635 None:intergenic 50.0%
GATCAATGAGCGGGAGAATG+CGG - chr1_2:46753737-46753756 None:intergenic 50.0%
TCCCGCTCATTGATCAGTCT+CGG + chr1_2:46753742-46753761 Msa0073280:CDS 50.0%
TCCGAGACTGATCAATGAGC+GGG - chr1_2:46753746-46753765 None:intergenic 50.0%
ACGGGGAAACGTATGGAGTT+AGG - chr1_2:46753802-46753821 None:intergenic 50.0%
!! GTATAATGGACTGCAGGTGG+TGG - chr1_2:46753860-46753879 None:intergenic 50.0%
!! GGTGTATAATGGACTGCAGG+TGG - chr1_2:46753863-46753882 None:intergenic 50.0%
!! GACGGTGTATAATGGACTGC+AGG - chr1_2:46753866-46753885 None:intergenic 50.0%
CAAGCTTAGGCTTGGAGTCT+TGG - chr1_2:46753909-46753928 None:intergenic 50.0%
TGAAACAACCGGAAACTCGC+CGG - chr1_2:46754094-46754113 None:intergenic 50.0%
! GGTTGTTTCACAATCCGACG+TGG + chr1_2:46754104-46754123 Msa0073280:CDS 50.0%
TGTTTCACAATCCGACGTGG+CGG + chr1_2:46754107-46754126 Msa0073280:CDS 50.0%
CTGTATTCTTCAGGCACCAC+GGG + chr1_2:46754135-46754154 Msa0073280:CDS 50.0%
TGTATTCTTCAGGCACCACG+GGG + chr1_2:46754136-46754155 Msa0073280:CDS 50.0%
!! AGGGAGTGATGTTGACTCAC+GGG + chr1_2:46754166-46754185 Msa0073280:CDS 50.0%
TCACGGGAACTTCATAGCGA+CGG + chr1_2:46754182-46754201 Msa0073280:CDS 50.0%
!!! GTGGCGGATCAGGACTTTTA+CGG + chr1_2:46754216-46754235 Msa0073280:CDS 50.0%
! GATCAGGACTTTTACGGCGA+GGG + chr1_2:46754222-46754241 Msa0073280:CDS 50.0%
! ATCAGGACTTTTACGGCGAG+GGG + chr1_2:46754223-46754242 Msa0073280:CDS 50.0%
! GATGCATCGGCACCAAACAA+AGG - chr1_2:46754260-46754279 None:intergenic 50.0%
! GATGCATCACGTGATGGGAT+TGG + chr1_2:46754272-46754291 Msa0073280:CDS 50.0%
TTATACACGCAGCTGAGGAG+AGG + chr1_2:46754303-46754322 Msa0073280:CDS 50.0%
TATACACGCAGCTGAGGAGA+GGG + chr1_2:46754304-46754323 Msa0073280:CDS 50.0%
TGTCGGAGGTGGAGAAGTTT+AGG + chr1_2:46754373-46754392 Msa0073280:CDS 50.0%
GTCGGAGGTGGAGAAGTTTA+GGG + chr1_2:46754374-46754393 Msa0073280:CDS 50.0%
! GCATTTGTTTGTTGCTCCGC+CGG + chr1_2:46754401-46754420 Msa0073280:CDS 50.0%
GCGAATAAGACCCGACACAA+AGG + chr1_2:46754775-46754794 Msa0073280:intron 50.0%
TCCAAATTATCCCGTGGGCA+GGG - chr1_2:46754802-46754821 None:intergenic 50.0%
TTCCAAATTATCCCGTGGGC+AGG - chr1_2:46754803-46754822 None:intergenic 50.0%
CGGGTTCCAAATTATCCCGT+GGG - chr1_2:46754807-46754826 None:intergenic 50.0%
TCGGGTTCCAAATTATCCCG+TGG - chr1_2:46754808-46754827 None:intergenic 50.0%
TCTCTACCGTCACAAGCACA+TGG + chr1_2:46754830-46754849 Msa0073280:intron 50.0%
CTCTACCGTCACAAGCACAT+GGG + chr1_2:46754831-46754850 Msa0073280:intron 50.0%
TCTTGCCCATGTGCTTGTGA+CGG - chr1_2:46754839-46754858 None:intergenic 50.0%
TGACTTTGTGCGGCAAGTGA+CGG + chr1_2:46754963-46754982 Msa0073280:intron 50.0%
GGTCCAAATGGTAAGGGGTT+TGG + chr1_2:46755039-46755058 Msa0073280:intron 50.0%
AGCCCAAACCCCTTACCATT+TGG - chr1_2:46755045-46755064 None:intergenic 50.0%
CCATCGAGTGAGGATGTTGT+GGG - chr1_2:46755156-46755175 None:intergenic 50.0%
TCCATCGAGTGAGGATGTTG+TGG - chr1_2:46755157-46755176 None:intergenic 50.0%
TGGTATGGGGTAATTGTGGC+AGG + chr1_2:46756013-46756032 Msa0073280:intron 50.0%
GGTATGGGGTAATTGTGGCA+GGG + chr1_2:46756014-46756033 Msa0073280:intron 50.0%
GTATGGGGTAATTGTGGCAG+GGG + chr1_2:46756015-46756034 Msa0073280:intron 50.0%
GAAAGGAAGGCTCCTTCCTT+TGG - chr1_2:46756083-46756102 None:intergenic 50.0%
GGAGCCTTCCTTTCGAATTC+AGG + chr1_2:46756089-46756108 Msa0073280:CDS 50.0%
CCCCTTCCACCGAATCAATT+AGG + chr1_2:46756173-46756192 Msa0073280:CDS 50.0%
!! CCCCTAATTGATTCGGTGGA+AGG - chr1_2:46756178-46756197 None:intergenic 50.0%
TCATAGAATTGGCCCACCCT+GGG - chr1_2:46757610-46757629 None:intergenic 50.0%
TTCATAGAATTGGCCCACCC+TGG - chr1_2:46757611-46757630 None:intergenic 50.0%
GCAGGAGTCGAACTAACAGA+AGG + chr1_2:46757814-46757833 Msa0073280:intron 50.0%
!! CCAATGTGGTTTGGGTTGGT+TGG - chr1_2:46758652-46758671 None:intergenic 50.0%
CCAACCAACCCAAACCACAT+TGG + chr1_2:46758649-46758668 Msa0073280:intron 50.0%
TGTATGGTGCAACCTGCATG+AGG - chr1_2:46758897-46758916 None:intergenic 50.0%
! ACTCGCCGCAACCTTTTGTA+TGG - chr1_2:46758913-46758932 None:intergenic 50.0%
ATCTTTCCCGTGGGTGACTT+TGG - chr1_2:46758955-46758974 None:intergenic 50.0%
ACACAACCTCCTCACTGTCA+CGG - chr1_2:46759079-46759098 None:intergenic 50.0%
!! GTTGATGGGTTGCCTTGGTG+AGG - chr1_2:46753581-46753600 None:intergenic 55.0%
!! GGAAGGTTGATGGGTTGCCT+TGG - chr1_2:46753586-46753605 None:intergenic 55.0%
GGGATCAGTGGGAAGGTTGA+TGG - chr1_2:46753596-46753615 None:intergenic 55.0%
AGAGGTTGGGATCAGTGGGA+AGG - chr1_2:46753603-46753622 None:intergenic 55.0%
AGGGAGAGGTTGGGATCAGT+GGG - chr1_2:46753607-46753626 None:intergenic 55.0%
TAGGGAGAGGTTGGGATCAG+TGG - chr1_2:46753608-46753627 None:intergenic 55.0%
GAAGGAGGTTAGGGAGAGGT+TGG - chr1_2:46753617-46753636 None:intergenic 55.0%
ACAGGAAGGAGGTTAGGGAG+AGG - chr1_2:46753621-46753640 None:intergenic 55.0%
ATCAGCGAGCGCAATGGTGT+CGG - chr1_2:46753665-46753684 None:intergenic 55.0%
GAAGCAGACGGGGAAACGTA+TGG - chr1_2:46753809-46753828 None:intergenic 55.0%
AATAGCACCTATGGCGGCGA+CGG - chr1_2:46753836-46753855 None:intergenic 55.0%
GGTGGCAATAGCACCTATGG+CGG - chr1_2:46753842-46753861 None:intergenic 55.0%
! GGTGGTGGCAATAGCACCTA+TGG - chr1_2:46753845-46753864 None:intergenic 55.0%
GGAGAGTTGTGTGAGAGCTC+CGG + chr1_2:46754072-46754091 Msa0073280:CDS 55.0%
AGGCACCACGGGGAAAAGTA+AGG + chr1_2:46754146-46754165 Msa0073280:CDS 55.0%
GGCACCACGGGGAAAAGTAA+GGG + chr1_2:46754147-46754166 Msa0073280:CDS 55.0%
!! CACTCCCTTACTTTTCCCCG+TGG - chr1_2:46754154-46754173 None:intergenic 55.0%
TTCATAGCGACGGCGATAGC+AGG + chr1_2:46754192-46754211 Msa0073280:CDS 55.0%
! GGATCAGGACTTTTACGGCG+AGG + chr1_2:46754221-46754240 Msa0073280:CDS 55.0%
! GTGCCGATGCATCACGTGAT+GGG + chr1_2:46754267-46754286 Msa0073280:CDS 55.0%
! GCATCACGTGATGGGATTGG+CGG + chr1_2:46754275-46754294 Msa0073280:CDS 55.0%
GGAGAAGACTTTGTCGGAGG+TGG + chr1_2:46754362-46754381 Msa0073280:CDS 55.0%
TTGACCAGCTCCACCATCAC+CGG - chr1_2:46754423-46754442 None:intergenic 55.0%
!! TGATGGTGGAGCTGGTCAAG+CGG + chr1_2:46754424-46754443 Msa0073280:CDS 55.0%
ACCCTGCCCACGGGATAATT+TGG + chr1_2:46754798-46754817 Msa0073280:intron 55.0%
GACTTTGTGCGGCAAGTGAC+GGG + chr1_2:46754964-46754983 Msa0073280:intron 55.0%
!! CAAGTGACGGGAGGGTATTC+AGG + chr1_2:46754976-46754995 Msa0073280:intron 55.0%
ATGGTAAGGGGTTTGGGCTC+CGG + chr1_2:46755046-46755065 Msa0073280:intron 55.0%
CCCACAACATCCTCACTCGA+TGG + chr1_2:46755153-46755172 Msa0073280:intron 55.0%
GGGTAATTGTGGCAGGGGTA+TGG + chr1_2:46756020-46756039 Msa0073280:intron 55.0%
CGAGGACCCGTTATGATGCA+AGG + chr1_2:46756209-46756228 Msa0073280:CDS 55.0%
GATCAGGGTTGGACGCTTAC+TGG + chr1_2:46756442-46756461 Msa0073280:CDS 55.0%
TGGACGCTTACTGGCGATCT+TGG + chr1_2:46756451-46756470 Msa0073280:CDS 55.0%
TGGCATCAGGAGACCTGAGA+TGG - chr1_2:46756852-46756871 None:intergenic 55.0%
AGGTCTCCTGATGCCAAAGC+TGG + chr1_2:46756856-46756875 Msa0073280:intron 55.0%
AACTGGAACCTCGCCAGCTT+TGG - chr1_2:46756872-46756891 None:intergenic 55.0%
CTGTTAGTTCGACTCCTGCG+TGG - chr1_2:46757813-46757832 None:intergenic 55.0%
GACATCTGCAGAGCCTTCCA+AGG - chr1_2:46759040-46759059 None:intergenic 55.0%
TTGCGCATCAGCGAGCGCAA+TGG - chr1_2:46753671-46753690 None:intergenic 60.0%
TGCGCTCGCTGATGCGCAAA+CGG + chr1_2:46753672-46753691 Msa0073280:CDS 60.0%
AGCGGGAGAATGCGGAGACT+TGG - chr1_2:46753729-46753748 None:intergenic 60.0%
TGAGAGCTCCGGCGAGTTTC+CGG + chr1_2:46754083-46754102 Msa0073280:CDS 60.0%
!! GATAGCAGGAGTGGCGGATC+AGG + chr1_2:46754206-46754225 Msa0073280:CDS 60.0%
!! GGTGCCGATGCATCACGTGA+TGG + chr1_2:46754266-46754285 Msa0073280:CDS 60.0%
GCAGCTGAGGAGAGGGAACA+CGG + chr1_2:46754311-46754330 Msa0073280:CDS 60.0%
AGGGAACACGGTGGTGTCCA+TGG + chr1_2:46754323-46754342 Msa0073280:CDS 60.0%
AACACGGTGGTGTCCATGGC+TGG + chr1_2:46754327-46754346 Msa0073280:CDS 60.0%
! GTTTGTTGCTCCGCCGGTGA+TGG + chr1_2:46754407-46754426 Msa0073280:CDS 60.0%
!! CTGGTGGTGCTGCTCCTCTT+GGG + chr1_2:46754493-46754512 Msa0073280:CDS 60.0%
TGGGCAGGGTCCTTTGTGTC+GGG - chr1_2:46754788-46754807 None:intergenic 60.0%
GTGGGCAGGGTCCTTTGTGT+CGG - chr1_2:46754789-46754808 None:intergenic 60.0%
GACACAAAGGACCCTGCCCA+CGG + chr1_2:46754788-46754807 Msa0073280:intron 60.0%
ACACAAAGGACCCTGCCCAC+GGG + chr1_2:46754789-46754808 Msa0073280:intron 60.0%
! TTTGTGCGGCAAGTGACGGG+AGG + chr1_2:46754967-46754986 Msa0073280:intron 60.0%
! TTGTGCGGCAAGTGACGGGA+GGG + chr1_2:46754968-46754987 Msa0073280:intron 60.0%
TCCTGATGCCAAAGCTGGCG+AGG + chr1_2:46756861-46756880 Msa0073280:CDS 60.0%
! ACCTCGCCAGCTTTGGCATC+AGG - chr1_2:46756865-46756884 None:intergenic 60.0%
ATGCTTGGTCGGCCCATGCT+TGG - chr1_2:46757708-46757727 None:intergenic 60.0%
AAGCATGGGCCGACCAAGCA+TGG + chr1_2:46757707-46757726 Msa0073280:intron 60.0%
AGCATGGGCCGACCAAGCAT+GGG + chr1_2:46757708-46757727 Msa0073280:intron 60.0%
GATTCGAACCGGCCCATGCT+TGG - chr1_2:46757723-46757742 None:intergenic 60.0%
! TTTAGGGTTGGGGTGGGTCG+TGG + chr1_2:46757967-46757986 Msa0073280:intron 60.0%
CCAGTGGCAGAGCCACTCAA+GGG - chr1_2:46758003-46758022 None:intergenic 60.0%
TCCAGTGGCAGAGCCACTCA+AGG - chr1_2:46758004-46758023 None:intergenic 60.0%
ACCTCCTCACTGTCACGGCA+GGG - chr1_2:46759074-46759093 None:intergenic 60.0%
AACCTCCTCACTGTCACGGC+AGG - chr1_2:46759075-46759094 None:intergenic 60.0%
! AGCGAGCGCAATGGTGTCGG+CGG - chr1_2:46753662-46753681 None:intergenic 65.0%
GCGCTCGCTGATGCGCAAAC+GGG + chr1_2:46753673-46753692 Msa0073280:CDS 65.0%
AGCGACGGCGATAGCAGGAG+TGG + chr1_2:46754197-46754216 Msa0073280:CDS 65.0%
GACGGCGATAGCAGGAGTGG+CGG + chr1_2:46754200-46754219 Msa0073280:CDS 65.0%
GCTGAGGAGAGGGAACACGG+TGG + chr1_2:46754314-46754333 Msa0073280:CDS 65.0%
! TGTTGCTCCGCCGGTGATGG+TGG + chr1_2:46754410-46754429 Msa0073280:CDS 65.0%
ACCAGCTCCACCATCACCGG+CGG - chr1_2:46754420-46754439 None:intergenic 65.0%
AAGCGGCGTGAGGTGGTGAG+CGG + chr1_2:46754441-46754460 Msa0073280:CDS 65.0%
TCGTCGCTGAAGCAGCTCGC+TGG + chr1_2:46754474-46754493 Msa0073280:CDS 65.0%
TCGCTGAAGCAGCTCGCTGG+TGG + chr1_2:46754477-46754496 Msa0073280:CDS 65.0%
!! GCTGGTGGTGCTGCTCCTCT+TGG + chr1_2:46754492-46754511 Msa0073280:CDS 65.0%
CGAACCGGCCCATGCTTGGT+CGG - chr1_2:46757719-46757738 None:intergenic 65.0%
AGCCACTCAAGGGCCAGGGT+GGG - chr1_2:46757993-46758012 None:intergenic 65.0%
GCAGAGCCACTCAAGGGCCA+GGG - chr1_2:46757997-46758016 None:intergenic 65.0%
! CCCTTGAGTGGCTCTGCCAC+TGG + chr1_2:46758000-46758019 Msa0073280:intron 65.0%
TGGTCCCTGCCGTGACAGTG+AGG + chr1_2:46759067-46759086 Msa0073280:three_prime_UTR 65.0%
TCCCTGCCGTGACAGTGAGG+AGG + chr1_2:46759070-46759089 Msa0073280:three_prime_UTR 65.0%
!! GAGCGCAATGGTGTCGGCGG+CGG - chr1_2:46753659-46753678 None:intergenic 70.0%
CGACGGCGAGGAAGCAGACG+GGG - chr1_2:46753819-46753838 None:intergenic 70.0%
GCGACGGCGAGGAAGCAGAC+GGG - chr1_2:46753820-46753839 None:intergenic 70.0%
GGCGACGGCGAGGAAGCAGA+CGG - chr1_2:46753821-46753840 None:intergenic 70.0%
TTCCTCGCCGTCGCCGCCAT+AGG + chr1_2:46753826-46753845 Msa0073280:CDS 70.0%
!! TCCGCCGGTGATGGTGGAGC+TGG + chr1_2:46754416-46754435 Msa0073280:CDS 70.0%
GGAGCTGGTCAAGCGGCGTG+AGG + chr1_2:46754431-46754450 Msa0073280:CDS 70.0%
GCTGGTCAAGCGGCGTGAGG+TGG + chr1_2:46754434-46754453 Msa0073280:CDS 70.0%
TGGGCCGACCAAGCATGGGC+CGG + chr1_2:46757712-46757731 Msa0073280:intron 70.0%
GAGCCACTCAAGGGCCAGGG+TGG - chr1_2:46757994-46758013 None:intergenic 70.0%
GGCAGAGCCACTCAAGGGCC+AGG - chr1_2:46757998-46758017 None:intergenic 70.0%
!! CGCAATGGTGTCGGCGGCGG+AGG - chr1_2:46753656-46753675 None:intergenic 75.0%
CACCTATGGCGGCGACGGCG+AGG - chr1_2:46753831-46753850 None:intergenic 75.0%
GGCCCACCCTGGCCCTTGAG+TGG + chr1_2:46757988-46758007 Msa0073280:intron 75.0%
! GGGTGGGTCGTGGCCCACCC+TGG + chr1_2:46757977-46757996 Msa0073280:intron 80.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 46753538 46759232 46753538 ID=Msa0073280;Name=Msa0073280
chr1_2 mRNA 46753538 46759232 46753538 ID=Msa0073280-mRNA-1;Parent=Msa0073280;Name=Msa0073280-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|1|0.83|1|1|1|6|206|555
chr1_2 exon 46753538 46754569 46753538 ID=Msa0073280-mRNA-1:exon:14209;Parent=Msa0073280-mRNA-1
chr1_2 exon 46756035 46756230 46756035 ID=Msa0073280-mRNA-1:exon:14210;Parent=Msa0073280-mRNA-1
chr1_2 exon 46756401 46756546 46756401 ID=Msa0073280-mRNA-1:exon:14211;Parent=Msa0073280-mRNA-1
chr1_2 exon 46756711 46756778 46756711 ID=Msa0073280-mRNA-1:exon:14212;Parent=Msa0073280-mRNA-1
chr1_2 exon 46756858 46756960 46756858 ID=Msa0073280-mRNA-1:exon:14213;Parent=Msa0073280-mRNA-1
chr1_2 exon 46758904 46759232 46758904 ID=Msa0073280-mRNA-1:exon:14214;Parent=Msa0073280-mRNA-1
chr1_2 CDS 46753538 46754569 46753538 ID=Msa0073280-mRNA-1:cds;Parent=Msa0073280-mRNA-1
chr1_2 CDS 46756035 46756230 46756035 ID=Msa0073280-mRNA-1:cds;Parent=Msa0073280-mRNA-1
chr1_2 CDS 46756401 46756546 46756401 ID=Msa0073280-mRNA-1:cds;Parent=Msa0073280-mRNA-1
chr1_2 CDS 46756711 46756778 46756711 ID=Msa0073280-mRNA-1:cds;Parent=Msa0073280-mRNA-1
chr1_2 CDS 46756858 46756960 46756858 ID=Msa0073280-mRNA-1:cds;Parent=Msa0073280-mRNA-1
chr1_2 CDS 46758904 46759026 46758904 ID=Msa0073280-mRNA-1:cds;Parent=Msa0073280-mRNA-1
chr1_2 three_prime_UTR 46759027 46759232 46759027 ID=Msa0073280-mRNA-1:three_prime_utr;Parent=Msa0073280-mRNA-1
Gene Sequence

>Msa0073280

ATGGCGAAAAACTGCTTCAACCTCAAAACGATGACGTATTCCTCACCAAGGCAACCCATCAACCTTCCCACTGATCCCAACCTCTCCCTAACCTCCTTCCTGTTTGAATCAACTTCCTCCGCCGCCGACACCATTGCGCTCGCTGATGCGCAAACGGGAGACTTCATCACCTTCCGCCAACTCAATATCCAAGTCTCCGCATTCTCCCGCTCATTGATCAGTCTCGGAATCAAACGAGGCGATGTCGTTATGCTATACGCACCTAACTCCATACGTTTCCCCGTCTGCTTCCTCGCCGTCGCCGCCATAGGTGCTATTGCCACCACCTGCAGTCCATTATACACCGTCTCCGAACTCACTAAGCAAATCCAAGACTCCAAGCCTAAGCTTGTTGTAACCGTATCGGAACTCTTCAAAAACATCGAAGGATTTGGCTTAGGTTTAACTTATATATTGCTTGACGATGAACCTTGGACTAGCGCATATACATCACACGGGTATGTTTCAAATGTTTGGTGCTACGAAGATCTTTTCGGAGAGTTGTGTGAGAGCTCCGGCGAGTTTCCGGTTGTTTCACAATCCGACGTGGCGGTTATTCTGTATTCTTCAGGCACCACGGGGAAAAGTAAGGGAGTGATGTTGACTCACGGGAACTTCATAGCGACGGCGATAGCAGGAGTGGCGGATCAGGACTTTTACGGCGAGGGGAAGAATGTGTTCCTTTGTTTGGTGCCGATGCATCACGTGATGGGATTGGCGGTGATATTATACACGCAGCTGAGGAGAGGGAACACGGTGGTGTCCATGGCTGGTAGATTTGATTTGGAGAAGACTTTGTCGGAGGTGGAGAAGTTTAGGGTGACGCATTTGTTTGTTGCTCCGCCGGTGATGGTGGAGCTGGTCAAGCGGCGTGAGGTGGTGAGCGGTTATGATTTGTCGTCGCTGAAGCAGCTCGCTGGTGGTGCTGCTCCTCTTGGGAAAGATTTGATGCAAGCATGTGCTGAGATTCTGCCCAAAATTGAAATCATTCAGGGGTATGGCATGACTGAAGCATGCGGACTTGTTTCTTTTGAAAATCCAAAGGAAGGAGCCTTCCTTTCGAATTCAGGTTCAACTGGAAAACTAGTTCCAAGTGTAGAATCCCAGATTGTTAGTTTGCAAACATCGAAGCCCCTTCCACCGAATCAATTAGGGGAAATTTGGCTACGAGGACCCGTTATGATGCAAGGATACTTTAACAATCCAGAAGCAACAAAACAGACCATTAATGATCAGGGTTGGACGCTTACTGGCGATCTTGGATATTTTGACGAAAAAGGACAACTATTTGTCGTGGATCGAATAAAAGAGTTGATCAAGTGCAACGGGTATCAAGTGGCGCCTGCTGAACTCGAAGACTTACTAATTTCTCATCCTGAAATTTCTGATGCTGGGGTGATTCCGTCTCCTGATGCCAAAGCTGGCGAGGTTCCAGTTGCTTTTGTTGTTCGCTCACTCAATAGCTCGATAACTGAAGAAGACATCAAGAAATTTGTAGCAAAAGAGGTTGCACCATACAAAAGGTTGCGGCGAGTGAATTTTATAGAGAAGATTCCAAAGTCACCCACGGGAAAGATTTTAAGAAAGGATCTCGTAATTTTAGATCGACAAATGATATCAAAGTTATAA
Protein sequence

>Msa0073280

MAKNCFNLKTMTYSSPRQPINLPTDPNLSLTSFLFESTSSAADTIALADAQTGDFITFRQLNIQVSAFSRSLISLGIKRGDVVMLYAPNSIRFPVCFLAVAAIGAIATTCSPLYTVSELTKQIQDSKPKLVVTVSELFKNIEGFGLGLTYILLDDEPWTSAYTSHGYVSNVWCYEDLFGELCESSGEFPVVSQSDVAVILYSSGTTGKSKGVMLTHGNFIATAIAGVADQDFYGEGKNVFLCLVPMHHVMGLAVILYTQLRRGNTVVSMAGRFDLEKTLSEVEKFRVTHLFVAPPVMVELVKRREVVSGYDLSSLKQLAGGAAPLGKDLMQACAEILPKIEIIQGYGMTEACGLVSFENPKEGAFLSNSGSTGKLVPSVESQIVSLQTSKPLPPNQLGEIWLRGPVMMQGYFNNPEATKQTINDQGWTLTGDLGYFDEKGQLFVVDRIKELIKCNGYQVAPAELEDLLISHPEISDAGVIPSPDAKAGEVPVAFVVRSLNSSITEEDIKKFVAKEVAPYKRLRRVNFIEKIPKSPTGKILRKDLVILDRQMISKL*