AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1400290


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1400290 MtrunA17_Chr1g0194601 96.732 306 8 1 1 306 1 304 0.0 606
Msa1400290 MtrunA17_Chr7g0270061 81.457 302 48 4 10 306 3 301 1.87e-174 484
Msa1400290 MtrunA17_Chr7g0251451 51.456 206 87 2 80 284 57 250 2.07e-69 218
Msa1400290 MtrunA17_Chr4g0038261 44.681 235 121 3 77 303 2 235 3.27e-62 197
Msa1400290 MtrunA17_Chr5g0409311 51.497 167 81 0 118 284 93 259 1.26e-56 184
Msa1400290 MtrunA17_Chr4g0034751 47.929 169 88 0 116 284 102 270 2.54e-50 167
Msa1400290 MtrunA17_Chr4g0056771 34.307 274 147 6 11 284 26 266 2.94e-42 147
Msa1400290 MtrunA17_Chr4g0055551 37.629 194 106 2 101 286 99 285 7.35e-31 117
Msa1400290 MtrunA17_Chr4g0015831 37.795 127 71 1 86 212 3 121 3.60e-25 97.8
Msa1400290 MtrunA17_CPg0492721 37.795 127 71 1 86 212 3 121 3.60e-25 97.8
Msa1400290 MtrunA17_Chr7g0272191 31.609 174 108 3 122 284 119 292 1.39e-24 101
Msa1400290 MtrunA17_Chr1g0184041 47.561 82 43 0 127 208 100 181 1.78e-20 87.0
Msa1400290 MtrunA17_Chr1g0207341 33.516 182 105 4 116 284 158 336 2.40e-19 87.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1400290 AT1G02560.1 80.872 298 56 1 1 297 1 298 8.18e-175 485
Msa1400290 AT1G66670.1 55.689 167 74 0 118 284 90 256 3.49e-63 202
Msa1400290 AT5G45390.1 53.216 171 80 0 114 284 80 250 8.29e-61 196
Msa1400290 AT5G23140.1 46.701 197 103 2 109 304 44 239 6.98e-58 186
Msa1400290 AT1G11750.1 38.148 270 154 5 20 284 6 267 2.04e-49 166
Msa1400290 AT1G11750.2 36.842 285 155 5 20 284 6 285 5.03e-48 162
Msa1400290 ATCG00670.1 37.688 199 115 3 86 283 3 193 6.56e-46 154
Msa1400290 AT1G12410.1 33.688 282 161 5 10 287 4 263 3.42e-41 144
Msa1400290 AT4G17040.1 38.144 194 105 2 101 286 100 286 3.71e-37 134
Msa1400290 AT1G09130.2 36.111 180 104 2 116 284 124 303 9.33e-32 121
Msa1400290 AT1G09130.1 36.111 180 104 2 116 284 124 303 9.33e-32 121
Msa1400290 AT1G09130.3 36.111 180 104 2 116 284 124 303 2.42e-31 120
Msa1400290 AT1G49970.1 33.146 178 109 2 116 283 174 351 1.16e-21 94.4

Find 99 sgRNAs with CRISPR-Local

Find 441 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGTGTATGGTGATCAATTT+TGG 0.210761 tig0022428:+86750 Msa1400290:CDS
AACATCACTAAGTATCATTT+TGG 0.227327 tig0022428:-91644 None:intergenic
GTGTTCTTCTAGGGAGGATT+TGG 0.266446 tig0022428:+86879 Msa1400290:intron
ATCGATGAGTCCATATTCTT+TGG 0.288327 tig0022428:-91431 None:intergenic
GCAAAAGAAGCCAAAGAATA+TGG 0.292792 tig0022428:+91421 Msa1400290:CDS
GATAGGACAGATACCCATTC+AGG 0.309008 tig0022428:-91339 None:intergenic
GGAGTTCACGTCAGGGTATT+TGG 0.314629 tig0022428:+86783 Msa1400290:CDS
TGAATCATTATCCTTGAGTT+TGG 0.321613 tig0022428:-90829 None:intergenic
GCAAACTGACATAGATATTC+AGG 0.327655 tig0022428:+90879 Msa1400290:CDS
ACAAACAATATTGTAGATTA+GGG 0.331055 tig0022428:+85853 Msa1400290:five_prime_UTR
TAAACTTTGCCCAGTTTGAT+AGG 0.348450 tig0022428:-91356 None:intergenic
AATGAGACATTGTTGTTTGT+TGG 0.348481 tig0022428:-85899 None:intergenic
AACGACGGACAAACCTTGTT+TGG 0.358156 tig0022428:-87181 None:intergenic
GATCAACAGCATCAAGATAA+AGG 0.360915 tig0022428:-87159 None:intergenic
TGTTCTTCTAGGGAGGATTT+GGG 0.362409 tig0022428:+86880 Msa1400290:intron
GGGTATCTGTCCTATCAAAC+TGG 0.363774 tig0022428:+91346 Msa1400290:CDS
TGTGCATAGGTAGGAAAATA+AGG 0.368409 tig0022428:-86916 None:intergenic
CCTTCGAACTCTTTGCTCTC+CGG 0.369539 tig0022428:+86017 Msa1400290:CDS
GGAAACGCTCCTGCACCATT+GGG 0.370261 tig0022428:-86954 None:intergenic
TACAAACAATATTGTAGATT+AGG 0.370820 tig0022428:+85852 Msa1400290:five_prime_UTR
TGGAAACGCTCCTGCACCAT+TGG 0.372062 tig0022428:-86955 None:intergenic
TAATCTACAATATTGTTTGT+AGG 0.372705 tig0022428:-85850 None:intergenic
GGAATCATTACCTTTGGTTC+CGG 0.378564 tig0022428:-90680 None:intergenic
AGCTTCCTTAACGTGGATCC+TGG 0.384393 tig0022428:+91704 Msa1400290:three_prime_UTR
TCTCAAAGCTCTTCAGCCTT+TGG 0.393350 tig0022428:+91471 Msa1400290:CDS
CTTCGAACTCTTTGCTCTCC+GGG 0.395033 tig0022428:+86018 Msa1400290:CDS
TACTGTGATAACTGATGATA+TGG 0.404728 tig0022428:+91759 Msa1400290:three_prime_UTR
ACCAGCTGTAACTGATCCTC+CGG 0.426032 tig0022428:-87368 None:intergenic
ACCCGAGAGGAGTTCACGTC+AGG 0.435644 tig0022428:+86775 Msa1400290:CDS
AGGAGAGTTGAGTGTAAGAG+AGG 0.441042 tig0022428:-85943 None:intergenic
CCCTCTTCTGCAGCTGCCAA+AGG 0.448770 tig0022428:-91487 None:intergenic
GTTGAGTGTAAGAGAGGAAG+AGG 0.452445 tig0022428:-85937 None:intergenic
CAAATCCAGGATCCACGTTA+AGG 0.453764 tig0022428:-91709 None:intergenic
ATCACCATACACAGCTTTCA+CGG 0.458968 tig0022428:-86741 None:intergenic
CATCACAAGGCAAACCTGAA+TGG 0.459835 tig0022428:+91325 Msa1400290:CDS
TTGAGTGTAAGAGAGGAAGA+GGG 0.464850 tig0022428:-85936 None:intergenic
CTATTATTTCCTAATTTCGT+AGG 0.475770 tig0022428:+91521 Msa1400290:exon
TGGTCTATCACAATTTGGTA+TGG 0.479452 tig0022428:-91815 None:intergenic
GTCAGGGTATTTGGTCCATA+AGG 0.486578 tig0022428:+86792 Msa1400290:CDS
CTGTGATTTGCAGGAAATTG+AGG 0.490449 tig0022428:+86681 Msa1400290:intron
ACCCTGACGTGAACTCCTCT+CGG 0.491382 tig0022428:-86777 None:intergenic
TGGCCCTTGTCCTTGTGCAT+AGG 0.495346 tig0022428:-86929 None:intergenic
ATCACAAGGCAAACCTGAAT+GGG 0.495914 tig0022428:+91326 Msa1400290:CDS
CACTGTCTGTGTTGGATTGG+CGG 0.498037 tig0022428:+87566 Msa1400290:CDS
CTGCTTAGTGCCGGAACCAA+AGG 0.500748 tig0022428:+90670 Msa1400290:CDS
GTGAGAGTGAGAAGAAGAAC+CGG 0.507930 tig0022428:-85982 None:intergenic
AAACGCTCCTGCACCATTGG+GGG 0.517765 tig0022428:-86952 None:intergenic
GTCCACTGTCTGTGTTGGAT+TGG 0.520930 tig0022428:+87563 Msa1400290:CDS
TGGAGCAGTTGACGATGATA+TGG 0.521009 tig0022428:+87114 Msa1400290:CDS
ACACAGACAGTGGACACATC+AGG 0.523363 tig0022428:-87555 None:intergenic
GAAACGCTCCTGCACCATTG+GGG 0.523580 tig0022428:-86953 None:intergenic
TCTGTGTTGGATTGGCGGCT+AGG 0.523757 tig0022428:+87571 Msa1400290:CDS
GCCTTTGGCAGCTGCAGAAG+AGG 0.529560 tig0022428:+91486 Msa1400290:CDS
GATGTGTCCACTGTCTGTGT+TGG 0.530369 tig0022428:+87558 Msa1400290:CDS
TGAGTGTAAGAGAGGAAGAG+GGG 0.531079 tig0022428:-85935 None:intergenic
GTATTGAATACAATGCTTGA+AGG 0.531735 tig0022428:-91739 None:intergenic
AGAAGAAGAACCGGTGGTGG+GGG 0.535745 tig0022428:-85973 None:intergenic
ATGATTCATCAACCGCTTGG+TGG 0.536787 tig0022428:+90844 Msa1400290:CDS
CCCGGAGGATCAGTTACAGC+TGG 0.538507 tig0022428:+87367 Msa1400290:CDS
CCTACCTATGCACAAGGACA+AGG 0.541580 tig0022428:+86925 Msa1400290:CDS
GTGAGAAGAAGAACCGGTGG+TGG 0.542322 tig0022428:-85976 None:intergenic
GTCATGTATGTAAATTCTCC+CGG 0.542326 tig0022428:+87349 Msa1400290:CDS
TTAATACGAAACTTGTTCAA+AGG 0.543434 tig0022428:-85812 None:intergenic
ATTGTTTGTAGGAGAGTGAG+TGG 0.546750 tig0022428:-85839 None:intergenic
AAAGTTGACTTATAACACTC+TGG 0.552761 tig0022428:-86975 None:intergenic
GAGTGTAAGAGAGGAAGAGG+GGG 0.557336 tig0022428:-85934 None:intergenic
GTTTCAGCTTGCCAAACTCA+AGG 0.562494 tig0022428:+90818 Msa1400290:CDS
GTAGGAAAATAAGGCGAAGA+CGG 0.567411 tig0022428:-86907 None:intergenic
CCCTGACGTGAACTCCTCTC+GGG 0.567797 tig0022428:-86776 None:intergenic
TGAGAAGAAGAACCGGTGGT+GGG 0.577299 tig0022428:-85975 None:intergenic
CTGCAGAAGAGGGTAAAGAC+CGG 0.577540 tig0022428:+91497 Msa1400290:CDS
AAATGAAATGCTGCATCACA+AGG 0.584369 tig0022428:+91312 Msa1400290:CDS
CCTTTGGCAGCTGCAGAAGA+GGG 0.585082 tig0022428:+91487 Msa1400290:CDS
TCTGCCGTGAAAGCTGTGTA+TGG 0.585170 tig0022428:+86737 Msa1400290:CDS
CCTTGTCCTTGTGCATAGGT+AGG 0.585374 tig0022428:-86925 None:intergenic
AAGTTTAGAGAAAATTAACC+AGG 0.591158 tig0022428:+91372 Msa1400290:CDS
GAGAAGAAGAACCGGTGGTG+GGG 0.592581 tig0022428:-85974 None:intergenic
GAAATTAGGAAATAATAGCC+CGG 0.595521 tig0022428:-91516 None:intergenic
ATAATGATTCATCAACCGCT+TGG 0.597203 tig0022428:+90841 Msa1400290:CDS
GGCATCAATCGAATATGTCT+AGG 0.604050 tig0022428:-91794 None:intergenic
TGCAGAAGAGGGTAAAGACC+GGG 0.605444 tig0022428:+91498 Msa1400290:CDS
TAGAGAATAATCCGTTGTGG+TGG 0.606980 tig0022428:+87094 Msa1400290:intron
TGATGCTGTTGATCCAAACA+AGG 0.607848 tig0022428:+87168 Msa1400290:CDS
CCCGAGAGGAGTTCACGTCA+GGG 0.610211 tig0022428:+86776 Msa1400290:CDS
CCGGAGAGCAAAGAGTTCGA+AGG 0.611003 tig0022428:-86017 None:intergenic
CCAGCTGTAACTGATCCTCC+GGG 0.618930 tig0022428:-87367 None:intergenic
TAACGATGTACCGAGAAATG+AGG 0.619614 tig0022428:+91621 Msa1400290:three_prime_UTR
GGTATCTGTCCTATCAAACT+GGG 0.622810 tig0022428:+91347 Msa1400290:CDS
AAAGAATATGGACTCATCGA+TGG 0.623110 tig0022428:+91433 Msa1400290:CDS
CGCCAATCCAACACAGACAG+TGG 0.626024 tig0022428:-87565 None:intergenic
AAAGGCTGAAGAGCTTTGAG+AGG 0.630190 tig0022428:-91469 None:intergenic
TGGCAATATTTGATACAATG+AGG 0.631433 tig0022428:+87523 Msa1400290:CDS
ATTTAGAGAATAATCCGTTG+TGG 0.633851 tig0022428:+87091 Msa1400290:intron
CTACCTATGCACAAGGACAA+GGG 0.671421 tig0022428:+86926 Msa1400290:CDS
CGTCAACTGCTCCACCACAA+CGG 0.680926 tig0022428:-87105 None:intergenic
AATATAAAGGAATGACTGGG+TGG 0.686256 tig0022428:+91840 Msa1400290:three_prime_UTR
CCTCCTTGAAAACCACCAAG+CGG 0.689995 tig0022428:-90856 None:intergenic
ATGTATGTAAATTCTCCCGG+AGG 0.710686 tig0022428:+87352 Msa1400290:CDS
AGAGTGAGAAGAAGAACCGG+TGG 0.741682 tig0022428:-85979 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATTATCTAAAAAAAGAT+AGG - tig0022428:87788-87807 None:intergenic 10.0%
!!! ATGAACAAAATTTAAAATAT+AGG + tig0022428:87956-87975 Msa1400290:intron 10.0%
!!! TTATATGATTATATATCTTT+TGG + tig0022428:88041-88060 Msa1400290:intron 10.0%
!! AATATTATAAATCAAGTAAT+CGG - tig0022428:88620-88639 None:intergenic 10.0%
!!! TAAGGAATATTATTTTATTT+AGG + tig0022428:89293-89312 Msa1400290:intron 10.0%
!!! TAATTAAGGTTTTATATTAA+TGG - tig0022428:89804-89823 None:intergenic 10.0%
!! TAAAATTGAGTTAAAAGAAA+AGG - tig0022428:86116-86135 None:intergenic 15.0%
!! ATATTATGATAAATTTGAAC+TGG + tig0022428:86369-86388 Msa1400290:intron 15.0%
!!! TTTATATTTTACTTCTACTA+AGG + tig0022428:86645-86664 Msa1400290:intron 15.0%
!!! TTATATTTTACTTCTACTAA+GGG + tig0022428:86646-86665 Msa1400290:intron 15.0%
!!! TACAAGTTAGTATATTTTTT+AGG + tig0022428:88353-88372 Msa1400290:intron 15.0%
!! ATAAATATTCTATGACTTAA+AGG + tig0022428:88811-88830 Msa1400290:intron 15.0%
!!! AGTTATTTTTTGTTACAAAT+TGG - tig0022428:88838-88857 None:intergenic 15.0%
!! GTAACAAAAAATAACTTAAA+AGG + tig0022428:88842-88861 Msa1400290:intron 15.0%
!! GTTATAAACATATAACTTAA+AGG + tig0022428:88897-88916 Msa1400290:intron 15.0%
!!! TAATTACTTCACTTTTATAA+CGG + tig0022428:88972-88991 Msa1400290:intron 15.0%
!!! ATTATTTTATTTAGGCTATT+TGG + tig0022428:89301-89320 Msa1400290:intron 15.0%
!!! ACATTTGTTTTAAAAATAAG+AGG - tig0022428:89895-89914 None:intergenic 15.0%
!!! TCTTATTTTTAAAACAAATG+TGG + tig0022428:89894-89913 Msa1400290:intron 15.0%
!!! TCTTTTTCATAGAAAATTAA+AGG + tig0022428:90977-90996 Msa1400290:intron 15.0%
!! TTTAATATTATCATGGTTTA+GGG - tig0022428:91038-91057 None:intergenic 15.0%
!! TAATCTACAATATTGTTTGT+AGG - tig0022428:85853-85872 None:intergenic 20.0%
!! TACAAACAATATTGTAGATT+AGG + tig0022428:85852-85871 Msa1400290:five_prime_UTR 20.0%
!! ACAAACAATATTGTAGATTA+GGG + tig0022428:85853-85872 Msa1400290:five_prime_UTR 20.0%
!!! TTTAACTCAATTTTAATTCC+TGG + tig0022428:86121-86140 Msa1400290:intron 20.0%
!! ATAAAAATAAGAACTTTACC+AGG - tig0022428:86142-86161 None:intergenic 20.0%
!!! TTTACTTGTTTCTTTGTTTT+GGG + tig0022428:86228-86247 Msa1400290:intron 20.0%
!! TACTAGCAAAATTTAAAAAG+GGG - tig0022428:86276-86295 None:intergenic 20.0%
!! CTACTAGCAAAATTTAAAAA+GGG - tig0022428:86277-86296 None:intergenic 20.0%
!!! CTTTTTAAATTTTGCTAGTA+GGG + tig0022428:86276-86295 Msa1400290:intron 20.0%
!! AAATAGCATAGAATATTCTA+CGG - tig0022428:86625-86644 None:intergenic 20.0%
!! AGTAAAAAATCCTTACATAT+TGG - tig0022428:87002-87021 None:intergenic 20.0%
!! AATAGATTATCAATAATCGA+AGG - tig0022428:87066-87085 None:intergenic 20.0%
!! TAATATTTCATTCTTCTTGT+GGG + tig0022428:87594-87613 Msa1400290:intron 20.0%
!! TAAAAAAAGATAGGCTTAAT+AGG - tig0022428:87779-87798 None:intergenic 20.0%
!! AAACATAGAAAATGACAAAA+GGG - tig0022428:87865-87884 None:intergenic 20.0%
!!! AATTTAAAATATAGGATACC+AGG + tig0022428:87964-87983 Msa1400290:intron 20.0%
!! GTTATAATCATGTAACTTAA+AGG - tig0022428:88397-88416 None:intergenic 20.0%
!!! ACGTTTTTTTAGTAAGAAAT+TGG + tig0022428:88430-88449 Msa1400290:intron 20.0%
!!! GCAAATATTTTATGACTTAA+AGG - tig0022428:88457-88476 None:intergenic 20.0%
!! ATAGTATTGTCTTCAAAAAT+AGG - tig0022428:88941-88960 None:intergenic 20.0%
!!! AATTACTTCACTTTTATAAC+GGG + tig0022428:88973-88992 Msa1400290:intron 20.0%
!! TATAATGTATGCTCAATATA+GGG - tig0022428:89028-89047 None:intergenic 20.0%
!! ATATAATGTATGCTCAATAT+AGG - tig0022428:89029-89048 None:intergenic 20.0%
!! AAATACTAGATATGAAAGAT+CGG + tig0022428:89094-89113 Msa1400290:intron 20.0%
!! AGTAATTGATGAATTTAAAC+AGG + tig0022428:89164-89183 Msa1400290:intron 20.0%
!! GTAATTGATGAATTTAAACA+GGG + tig0022428:89165-89184 Msa1400290:intron 20.0%
!! TTGAATGCTTAATTATACAA+TGG - tig0022428:89215-89234 None:intergenic 20.0%
!!! GCATTACTAATAAACTTTTA+AGG + tig0022428:89275-89294 Msa1400290:intron 20.0%
!!! TTTTCAAGCACTAAATTAAA+AGG - tig0022428:89839-89858 None:intergenic 20.0%
!! ACTAAAATCAAGCAAAAAAT+AGG - tig0022428:89872-89891 None:intergenic 20.0%
!!! TGTTCAATTTTAAGAATAAG+CGG + tig0022428:90383-90402 Msa1400290:intron 20.0%
!!! ATCCATTTTTCTTCTTTTTT+AGG + tig0022428:90722-90741 Msa1400290:intron 20.0%
!! ATAGATATTCAGGTATATAT+AGG + tig0022428:90889-90908 Msa1400290:intron 20.0%
!!! ATTTTATCAAAAGAAACAAG+AGG - tig0022428:90951-90970 None:intergenic 20.0%
!! GTTTAATATTATCATGGTTT+AGG - tig0022428:91039-91058 None:intergenic 20.0%
!! AAAATAGGAATATAAGAGTA+TGG - tig0022428:91078-91097 None:intergenic 20.0%
!! AATAAAAATAGAACAGGTAT+AGG - tig0022428:91107-91126 None:intergenic 20.0%
!!! AAGCTTTTTTGAATTTTAAC+AGG - tig0022428:91689-91708 None:intergenic 20.0%
!! AAAAATATAAAGGAATGACT+GGG + tig0022428:91837-91856 Msa1400290:three_prime_UTR 20.0%
!!! ATTTCTTAGTTTTGATAGTT+GGG + tig0022428:91887-91906 Msa1400290:three_prime_UTR 20.0%
!! TTAATACGAAACTTGTTCAA+AGG - tig0022428:85815-85834 None:intergenic 25.0%
! GAAAGAAAAATATACATACC+CGG - tig0022428:86039-86058 None:intergenic 25.0%
! TTGAAATTGAAGAAAAGACA+AGG - tig0022428:86061-86080 None:intergenic 25.0%
! TTGAGTTAAAAGAAAAGGTT+AGG - tig0022428:86111-86130 None:intergenic 25.0%
!!! TTTTTTTTCCTTCCAATTTG+TGG + tig0022428:86184-86203 Msa1400290:intron 25.0%
!!! TTTTTTTCCTTCCAATTTGT+GGG + tig0022428:86185-86204 Msa1400290:intron 25.0%
!!! GTTTACTTGTTTCTTTGTTT+TGG + tig0022428:86227-86246 Msa1400290:intron 25.0%
!!! TTTCTTTGTTTTGGGTTATT+AGG + tig0022428:86236-86255 Msa1400290:intron 25.0%
! CCTACTAGCAAAATTTAAAA+AGG - tig0022428:86278-86297 None:intergenic 25.0%
!! CCTTTTTAAATTTTGCTAGT+AGG + tig0022428:86275-86294 Msa1400290:intron 25.0%
! TTGAGACAAATGAATAATCT+GGG + tig0022428:86399-86418 Msa1400290:intron 25.0%
! AATAGCATAGAATATTCTAC+GGG - tig0022428:86624-86643 None:intergenic 25.0%
! TTGATATATGTGTTCTTCTA+GGG + tig0022428:86870-86889 Msa1400290:intron 25.0%
!!! ATGTAAGGATTTTTTACTCT+TGG + tig0022428:87004-87023 Msa1400290:intron 25.0%
! TTTGATCAACTAAAAAACGA+CGG - tig0022428:87199-87218 None:intergenic 25.0%
! GGATCACTTTATATAGATAA+AGG - tig0022428:87239-87258 None:intergenic 25.0%
! ATTACATGTAGTCTAAACAT+AGG + tig0022428:87440-87459 Msa1400290:intron 25.0%
!!! CTTTCTTTGTTTTTGTTCTT+AGG + tig0022428:87498-87517 Msa1400290:intron 25.0%
!!! TTTGTTTTTGTTCTTAGGTA+TGG + tig0022428:87503-87522 Msa1400290:intron 25.0%
! GTAATATTTCATTCTTCTTG+TGG + tig0022428:87593-87612 Msa1400290:intron 25.0%
! TTTGTGTGTACATGAAATTT+AGG - tig0022428:87680-87699 None:intergenic 25.0%
! AACATAGAAAATGACAAAAG+GGG - tig0022428:87864-87883 None:intergenic 25.0%
! GAAACATAGAAAATGACAAA+AGG - tig0022428:87866-87885 None:intergenic 25.0%
! GATCTAATATGCATATGAAA+TGG - tig0022428:88270-88289 None:intergenic 25.0%
! TAGATCAAACTTGATTGTAA+TGG + tig0022428:88284-88303 Msa1400290:intron 25.0%
! TTCTTACTAAAAAAACGTCA+AGG - tig0022428:88428-88447 None:intergenic 25.0%
!!! AAACACTTTTTGATTGAGTT+TGG - tig0022428:88498-88517 None:intergenic 25.0%
!!! TCAATCAAAAAGTGTTTATG+TGG + tig0022428:88501-88520 Msa1400290:intron 25.0%
! TAGACCATTTAACATTAAGA+TGG - tig0022428:88748-88767 None:intergenic 25.0%
! AATAACTTAAAAGGACCAAT+CGG + tig0022428:88851-88870 Msa1400290:intron 25.0%
!!! AAGTTTTTTATGTTACCGAT+TGG - tig0022428:88869-88888 None:intergenic 25.0%
! AATACTAGATATGAAAGATC+GGG + tig0022428:89095-89114 Msa1400290:intron 25.0%
! TAAACACGTATGACATATAT+TGG - tig0022428:89704-89723 None:intergenic 25.0%
! TAAAACCTTAATTACTCTGT+TGG + tig0022428:89810-89829 Msa1400290:intron 25.0%
! ATGAAAATACTTAACCAAGA+GGG - tig0022428:90030-90049 None:intergenic 25.0%
!! TTAGTCAATCTGTTAATTTG+AGG - tig0022428:90360-90379 None:intergenic 25.0%
! GTGTGAAATTACTCAAATAT+TGG - tig0022428:90533-90552 None:intergenic 25.0%
! GACCTAAAAAAGAAGAAAAA+TGG - tig0022428:90727-90746 None:intergenic 25.0%
! GAATGGAATAAAAATAGAAC+AGG - tig0022428:91113-91132 None:intergenic 25.0%
!! TTTTGAACACCTATACAATA+AGG + tig0022428:91185-91204 Msa1400290:intron 25.0%
! TTTGAACACCTATACAATAA+GGG + tig0022428:91186-91205 Msa1400290:intron 25.0%
! AAGTTTAGAGAAAATTAACC+AGG + tig0022428:91372-91391 Msa1400290:CDS 25.0%
! CTATTATTTCCTAATTTCGT+AGG + tig0022428:91521-91540 Msa1400290:exon 25.0%
!! TTTTTCATACCTACGAAATT+AGG - tig0022428:91533-91552 None:intergenic 25.0%
!!! AAAAACAAGGATGTTGTTTT+TGG + tig0022428:91548-91567 Msa1400290:three_prime_UTR 25.0%
!! AACATCACTAAGTATCATTT+TGG - tig0022428:91647-91666 None:intergenic 25.0%
!!! ATTTTTGGTCTATCACAATT+TGG - tig0022428:91823-91842 None:intergenic 25.0%
! GTGATAGACCAAAAATATAA+AGG + tig0022428:91827-91846 Msa1400290:three_prime_UTR 25.0%
!! CAGTCATTCCTTTATATTTT+TGG - tig0022428:91838-91857 None:intergenic 25.0%
! CAAAAATATAAAGGAATGAC+TGG + tig0022428:91836-91855 Msa1400290:three_prime_UTR 25.0%
!!! CATTTCTTAGTTTTGATAGT+TGG + tig0022428:91886-91905 Msa1400290:three_prime_UTR 25.0%
!!! TTTCTTAGTTTTGATAGTTG+GGG + tig0022428:91888-91907 Msa1400290:three_prime_UTR 25.0%
!! AATGAGACATTGTTGTTTGT+TGG - tig0022428:85902-85921 None:intergenic 30.0%
AAGGTTAGGAATAAGTTCAA+GGG - tig0022428:86097-86116 None:intergenic 30.0%
AAAGGTTAGGAATAAGTTCA+AGG - tig0022428:86098-86117 None:intergenic 30.0%
AAAACTCAATACCCACAAAT+TGG - tig0022428:86199-86218 None:intergenic 30.0%
! TAAATTTTGCTAGTAGGGTT+TGG + tig0022428:86281-86300 Msa1400290:intron 30.0%
! AAATTTTGCTAGTAGGGTTT+GGG + tig0022428:86282-86301 Msa1400290:intron 30.0%
CTTGAGACAAATGAATAATC+TGG + tig0022428:86398-86417 Msa1400290:intron 30.0%
ACTAGAGCTAATTAATCACT+TGG - tig0022428:86471-86490 None:intergenic 30.0%
!! GTGATTAATTAGCTCTAGTT+AGG + tig0022428:86472-86491 Msa1400290:intron 30.0%
! TGTGTATGGTGATCAATTTT+GGG + tig0022428:86751-86770 Msa1400290:CDS 30.0%
ACAAGCAAAAATCTACCTTA+TGG - tig0022428:86810-86829 None:intergenic 30.0%
CTTGATATATGTGTTCTTCT+AGG + tig0022428:86869-86888 Msa1400290:intron 30.0%
! AAAGTTGACTTATAACACTC+TGG - tig0022428:86978-86997 None:intergenic 30.0%
! GTCAACTTTTCCAATATGTA+AGG + tig0022428:86989-87008 Msa1400290:intron 30.0%
ATTTAGAGAATAATCCGTTG+TGG + tig0022428:87091-87110 Msa1400290:intron 30.0%
!! CAAACACATGCATTTTGATA+TGG + tig0022428:87281-87300 Msa1400290:intron 30.0%
TCTTATCTACTATGTTGAAC+AGG + tig0022428:87321-87340 Msa1400290:intron 30.0%
TGGCAATATTTGATACAATG+AGG + tig0022428:87523-87542 Msa1400290:CDS 30.0%
!!! TTTTTGTTTTGCTGAGTTCT+AGG + tig0022428:87712-87731 Msa1400290:intron 30.0%
TCTAGCAATAACACTTCATT+TGG - tig0022428:88133-88152 None:intergenic 30.0%
TAAACCATAATTGTCAGCTA+AGG + tig0022428:88194-88213 Msa1400290:intron 30.0%
AAACCATAATTGTCAGCTAA+GGG + tig0022428:88195-88214 Msa1400290:intron 30.0%
ATATGAAATGGACCAATTAG+TGG - tig0022428:88258-88277 None:intergenic 30.0%
! GTTTGGTGAAATTAGGATAA+TGG - tig0022428:88481-88500 None:intergenic 30.0%
! TGATTGAGTTTGGTGAAATT+AGG - tig0022428:88488-88507 None:intergenic 30.0%
GTGGATGTTTAATGTTATGT+TGG + tig0022428:88520-88539 Msa1400290:intron 30.0%
!!! AGTTTTGAGAGCAATGAATT+TGG - tig0022428:88551-88570 None:intergenic 30.0%
! TTTGATGTCATAAGCACTTT+TGG + tig0022428:88717-88736 Msa1400290:intron 30.0%
CCATTTAACATTAAGATGGT+AGG - tig0022428:88744-88763 None:intergenic 30.0%
CCTACCATCTTAATGTTAAA+TGG + tig0022428:88741-88760 Msa1400290:intron 30.0%
!! TAAGCACTTTTTAACGAAGT+TGG + tig0022428:88768-88787 Msa1400290:intron 30.0%
GTTCAAAAGTTCTTGGTTAA+GGG - tig0022428:89575-89594 None:intergenic 30.0%
TGTTCAAAAGTTCTTGGTTA+AGG - tig0022428:89576-89595 None:intergenic 30.0%
! GCTTTTTGTTCAAAAGTTCT+TGG - tig0022428:89582-89601 None:intergenic 30.0%
AAAAAGCTTAAGAGCTTCTT+AGG + tig0022428:89595-89614 Msa1400290:intron 30.0%
GTGTTCAGCATATTTAACAA+AGG - tig0022428:89626-89645 None:intergenic 30.0%
TACGCTGATCTAATAGTTTA+CGG + tig0022428:89964-89983 Msa1400290:intron 30.0%
GATGAAAATACTTAACCAAG+AGG - tig0022428:90031-90050 None:intergenic 30.0%
AAGTTCATTCCCTCTTTAAA+TGG + tig0022428:90208-90227 Msa1400290:intron 30.0%
ATGGAAAATTATCTGCATTG+GGG - tig0022428:90296-90315 None:intergenic 30.0%
GATGGAAAATTATCTGCATT+GGG - tig0022428:90297-90316 None:intergenic 30.0%
TGATGGAAAATTATCTGCAT+TGG - tig0022428:90298-90317 None:intergenic 30.0%
TTAACACATCCATCAGATAT+TGG + tig0022428:90333-90352 Msa1400290:intron 30.0%
!!! ATATAGCTGAAGTGCTATTT+TGG - tig0022428:90439-90458 None:intergenic 30.0%
CACACTGAAAACTAATTGAT+AGG + tig0022428:90548-90567 Msa1400290:intron 30.0%
ACAGATCAATATGTAAGTAC+AGG - tig0022428:90627-90646 None:intergenic 30.0%
GTTAAAGGAATCATTACCTT+TGG - tig0022428:90689-90708 None:intergenic 30.0%
ATACAGTCATTGCAAGTTAA+AGG - tig0022428:90704-90723 None:intergenic 30.0%
! ATTTTTCCCTTTTGCAAAAG+TGG - tig0022428:90749-90768 None:intergenic 30.0%
TGAATCATTATCCTTGAGTT+TGG - tig0022428:90832-90851 None:intergenic 30.0%
AGAAAATTAAAGGCTATCAC+AGG + tig0022428:90987-91006 Msa1400290:intron 30.0%
TGGGGAGTTTAATATTATCA+TGG - tig0022428:91045-91064 None:intergenic 30.0%
AGAGTATGGAACAATATTGT+GGG - tig0022428:91064-91083 None:intergenic 30.0%
! AAGAGTATGGAACAATATTG+TGG - tig0022428:91065-91084 None:intergenic 30.0%
AGGTATAGGAAAGGAAAAAT+AGG - tig0022428:91093-91112 None:intergenic 30.0%
AAATAGAACAGGTATAGGAA+AGG - tig0022428:91102-91121 None:intergenic 30.0%
!!! TTTTGGCTTTAGTTGGTTTT+TGG + tig0022428:91143-91162 Msa1400290:intron 30.0%
GATGATATCCCTTATTGTAT+AGG - tig0022428:91197-91216 None:intergenic 30.0%
TTATGATTCATAATCCTCTC+AGG + tig0022428:91288-91307 Msa1400290:intron 30.0%
TTGCACTCATGAAAAAATCA+CGG - tig0022428:91405-91424 None:intergenic 30.0%
GAAATTAGGAAATAATAGCC+CGG - tig0022428:91519-91538 None:intergenic 30.0%
TTTCGTAGGTATGAAAAACA+AGG + tig0022428:91535-91554 Msa1400290:three_prime_UTR 30.0%
! TTTTAACAGGATAAACTCTG+AGG - tig0022428:91676-91695 None:intergenic 30.0%
GTATTGAATACAATGCTTGA+AGG - tig0022428:91742-91761 None:intergenic 30.0%
TACTGTGATAACTGATGATA+TGG + tig0022428:91759-91778 Msa1400290:three_prime_UTR 30.0%
GACAAATGAATAATCTGGGT+TGG + tig0022428:86403-86422 Msa1400290:intron 35.0%
! GAGAATTTGAGTTCAAATCG+TGG + tig0022428:86508-86527 Msa1400290:intron 35.0%
ACCAGAAAGTAAGTAAAGTC+TGG - tig0022428:86550-86569 None:intergenic 35.0%
ATAGAATATTCTACGGGAAG+GGG - tig0022428:86618-86637 None:intergenic 35.0%
CATAGAATATTCTACGGGAA+GGG - tig0022428:86619-86638 None:intergenic 35.0%
! CTGTGTATGGTGATCAATTT+TGG + tig0022428:86750-86769 Msa1400290:CDS 35.0%
! GTGTATGGTGATCAATTTTG+GGG + tig0022428:86752-86771 Msa1400290:CDS 35.0%
! ATATATGTGTTCTTCTAGGG+AGG + tig0022428:86873-86892 Msa1400290:intron 35.0%
TGTGCATAGGTAGGAAAATA+AGG - tig0022428:86919-86938 None:intergenic 35.0%
! TATTTTCCTACCTATGCACA+AGG + tig0022428:86919-86938 Msa1400290:CDS 35.0%
GATCAACAGCATCAAGATAA+AGG - tig0022428:87162-87181 None:intergenic 35.0%
!! TTTTAGTTGATCAAAGCTCG+TGG + tig0022428:87204-87223 Msa1400290:intron 35.0%
! TGACATCTCTAGAAATGCAA+AGG - tig0022428:87260-87279 None:intergenic 35.0%
GTCATGTATGTAAATTCTCC+CGG + tig0022428:87349-87368 Msa1400290:CDS 35.0%
TACCACTCACTATCAGTAAA+AGG + tig0022428:87642-87661 Msa1400290:intron 35.0%
ACCACTCACTATCAGTAAAA+GGG + tig0022428:87643-87662 Msa1400290:intron 35.0%
TTTCATAGAATACTAGCGAC+AGG - tig0022428:87888-87907 None:intergenic 35.0%
ATCATATAACCACACGTGAT+TGG - tig0022428:88030-88049 None:intergenic 35.0%
TTTAGGCCAAATACCATTTG+CGG + tig0022428:88370-88389 Msa1400290:intron 35.0%
AACGAAGTTGGCTGAAAAAA+TGG + tig0022428:88780-88799 Msa1400290:intron 35.0%
ACATATAACTTAAAGGACCG+CGG + tig0022428:88904-88923 Msa1400290:intron 35.0%
ATGCTCAATATAGGGTATGT+TGG - tig0022428:89020-89039 None:intergenic 35.0%
TTAAAACTTACGAGCCTCTT+AGG + tig0022428:89397-89416 Msa1400290:intron 35.0%
! CAGCATATTTTGCAAAGGTA+TGG - tig0022428:89423-89442 None:intergenic 35.0%
! GTGTTCAGCATATTTTGCAA+AGG - tig0022428:89428-89447 None:intergenic 35.0%
TGCTGAACACAAGATATGTA+AGG + tig0022428:89438-89457 Msa1400290:intron 35.0%
ACTCAGAGTGCACTATATTT+AGG + tig0022428:89480-89499 Msa1400290:intron 35.0%
TGCACTATATTTAGGCTATC+TGG + tig0022428:89488-89507 Msa1400290:intron 35.0%
!! ATTTAGGCTATCTGGAGTTT+TGG + tig0022428:89496-89515 Msa1400290:intron 35.0%
!!! ATCTGGAGTTTTGGACTAAA+TGG + tig0022428:89505-89524 Msa1400290:intron 35.0%
TGTCATACGTGTTTATGTTC+TGG + tig0022428:89709-89728 Msa1400290:intron 35.0%
! GTGTTTATGTTCTGGATTTG+TGG + tig0022428:89717-89736 Msa1400290:intron 35.0%
ACTGAGAAGAACTAGGTTAA+CGG - tig0022428:89747-89766 None:intergenic 35.0%
GGAAACCAACAGAGTAATTA+AGG - tig0022428:89818-89837 None:intergenic 35.0%
CAAGCAAAAAATAGGAGAAC+TGG - tig0022428:89864-89883 None:intergenic 35.0%
TTAACTAGTTGGACAACACT+TGG - tig0022428:89929-89948 None:intergenic 35.0%
GAGAAGCTGAATTAACTAGT+TGG - tig0022428:89940-89959 None:intergenic 35.0%
ATACTTGGTCAGAAAGGTAA+AGG - tig0022428:90173-90192 None:intergenic 35.0%
TTTACCTTTCTGACCAAGTA+TGG + tig0022428:90172-90191 Msa1400290:intron 35.0%
GAATTGTCTAACTCCATACT+TGG - tig0022428:90188-90207 None:intergenic 35.0%
TTCATTCCCTCTTTAAATGG+TGG + tig0022428:90211-90230 Msa1400290:intron 35.0%
TTCCAACCACCATTTAAAGA+GGG - tig0022428:90220-90239 None:intergenic 35.0%
! ACAATAAGCTATGATTGGTC+GGG - tig0022428:90256-90275 None:intergenic 35.0%
GACAATAAGCTATGATTGGT+CGG - tig0022428:90257-90276 None:intergenic 35.0%
CTCAGACAATAAGCTATGAT+TGG - tig0022428:90261-90280 None:intergenic 35.0%
TGGAAAATTATCTGCATTGG+GGG - tig0022428:90295-90314 None:intergenic 35.0%
!! AAGAGTTAAGTTGGACATGA+TGG - tig0022428:90315-90334 None:intergenic 35.0%
GGATGTGTTAAGAGTTAAGT+TGG - tig0022428:90324-90343 None:intergenic 35.0%
! ATTTGAGGTCCAATATCTGA+TGG - tig0022428:90345-90364 None:intergenic 35.0%
TAGCACTTCAGCTATATTTG+AGG + tig0022428:90442-90461 Msa1400290:intron 35.0%
AGCACTTCAGCTATATTTGA+GGG + tig0022428:90443-90462 Msa1400290:intron 35.0%
!! TTTAGGTCCACTTTTGCAAA+AGG + tig0022428:90739-90758 Msa1400290:intron 35.0%
!! TTAGGTCCACTTTTGCAAAA+GGG + tig0022428:90740-90759 Msa1400290:intron 35.0%
TCCTTCAAAAATGACAGAGT+CGG - tig0022428:90794-90813 None:intergenic 35.0%
ATAATGATTCATCAACCGCT+TGG + tig0022428:90841-90860 Msa1400290:CDS 35.0%
GCAAACTGACATAGATATTC+AGG + tig0022428:90879-90898 Msa1400290:CDS 35.0%
ATGGTTTAGGGATAACTCAT+TGG - tig0022428:91026-91045 None:intergenic 35.0%
GAGTATGGAACAATATTGTG+GGG - tig0022428:91063-91082 None:intergenic 35.0%
! TCCATTCCATGTCATACTTT+TGG + tig0022428:91126-91145 Msa1400290:intron 35.0%
! CTAAAGCCAAAAGTATGACA+TGG - tig0022428:91135-91154 None:intergenic 35.0%
!!! GTCATACTTTTGGCTTTAGT+TGG + tig0022428:91136-91155 Msa1400290:intron 35.0%
!!! GCTTTAGTTGGTTTTTGGAT+TGG + tig0022428:91148-91167 Msa1400290:intron 35.0%
AAATGAAATGCTGCATCACA+AGG + tig0022428:91312-91331 Msa1400290:CDS 35.0%
TAAACTTTGCCCAGTTTGAT+AGG - tig0022428:91359-91378 None:intergenic 35.0%
GCAAAAGAAGCCAAAGAATA+TGG + tig0022428:91421-91440 Msa1400290:CDS 35.0%
ATCGATGAGTCCATATTCTT+TGG - tig0022428:91434-91453 None:intergenic 35.0%
AAAGAATATGGACTCATCGA+TGG + tig0022428:91433-91452 Msa1400290:CDS 35.0%
!!! ACAAGGATGTTGTTTTTGGT+TGG + tig0022428:91552-91571 Msa1400290:three_prime_UTR 35.0%
!! ATCATTTTGGCCTCATTTCT+CGG - tig0022428:91634-91653 None:intergenic 35.0%
TCAAAAAAGCTTCCTTAACG+TGG + tig0022428:91697-91716 Msa1400290:three_prime_UTR 35.0%
TGGTCTATCACAATTTGGTA+TGG - tig0022428:91818-91837 None:intergenic 35.0%
AATATAAAGGAATGACTGGG+TGG + tig0022428:91840-91859 Msa1400290:three_prime_UTR 35.0%
ATTGTTTGTAGGAGAGTGAG+TGG - tig0022428:85842-85861 None:intergenic 40.0%
TTGAGTGTAAGAGAGGAAGA+GGG - tig0022428:85939-85958 None:intergenic 40.0%
CTCAATACCCACAAATTGGA+AGG - tig0022428:86195-86214 None:intergenic 40.0%
GCCAGACTTTACTTACTTTC+TGG + tig0022428:86546-86565 Msa1400290:intron 40.0%
TAGAATATTCTACGGGAAGG+GGG - tig0022428:86617-86636 None:intergenic 40.0%
GCATAGAATATTCTACGGGA+AGG - tig0022428:86620-86639 None:intergenic 40.0%
! AAAACCATGCTGTGATTTGC+AGG + tig0022428:86672-86691 Msa1400290:intron 40.0%
ATTTCCTGCAAATCACAGCA+TGG - tig0022428:86679-86698 None:intergenic 40.0%
! CTGTGATTTGCAGGAAATTG+AGG + tig0022428:86681-86700 Msa1400290:intron 40.0%
ATCACCATACACAGCTTTCA+CGG - tig0022428:86744-86763 None:intergenic 40.0%
! TGTTCTTCTAGGGAGGATTT+GGG + tig0022428:86880-86899 Msa1400290:intron 40.0%
GTAGGAAAATAAGGCGAAGA+CGG - tig0022428:86910-86929 None:intergenic 40.0%
TAGAGAATAATCCGTTGTGG+TGG + tig0022428:87094-87113 Msa1400290:intron 40.0%
TGATGCTGTTGATCCAAACA+AGG + tig0022428:87168-87187 Msa1400290:CDS 40.0%
ATGTATGTAAATTCTCCCGG+AGG + tig0022428:87352-87371 Msa1400290:CDS 40.0%
!! ACCCTTTTACTGATAGTGAG+TGG - tig0022428:87647-87666 None:intergenic 40.0%
TATGAAACCCCGACATAGAT+AGG + tig0022428:87901-87920 Msa1400290:intron 40.0%
ATGAAACCCCGACATAGATA+GGG + tig0022428:87902-87921 Msa1400290:intron 40.0%
TCTCAAGTCTCAACAAATCC+TGG - tig0022428:87985-88004 None:intergenic 40.0%
TTGAGACTTGAGATCATGAG+AGG + tig0022428:87992-88011 Msa1400290:intron 40.0%
TGAATACATACCACGTGTGA+GGG + tig0022428:88086-88105 Msa1400290:intron 40.0%
!! TGGTGTTGCTGCATATGAAA+CGG - tig0022428:88222-88241 None:intergenic 40.0%
TTAGTGGCGTAAAGTTTGGT+TGG - tig0022428:88242-88261 None:intergenic 40.0%
CCAATTAGTGGCGTAAAGTT+TGG - tig0022428:88246-88265 None:intergenic 40.0%
CCAAACTTTACGCCACTAAT+TGG + tig0022428:88243-88262 Msa1400290:intron 40.0%
AAAGGACCGCAAATGGTATT+TGG - tig0022428:88379-88398 None:intergenic 40.0%
GTAACTTAAAGGACCGCAAA+TGG - tig0022428:88386-88405 None:intergenic 40.0%
CTCTCAAAACTAGAGCTCAA+AGG + tig0022428:88560-88579 Msa1400290:intron 40.0%
CATATAACTTAAAGGACCGC+GGG + tig0022428:88905-88924 Msa1400290:intron 40.0%
TGAAAGATCGGGTCTTCATA+TGG + tig0022428:89106-89125 Msa1400290:intron 40.0%
TGAGTGACTAATGCAAATGG+TGG - tig0022428:89465-89484 None:intergenic 40.0%
CTCTGAGTGACTAATGCAAA+TGG - tig0022428:89468-89487 None:intergenic 40.0%
TTGGAAATAGAGTGCACTCT+GGG - tig0022428:89685-89704 None:intergenic 40.0%
ATTGGAAATAGAGTGCACTC+TGG - tig0022428:89686-89705 None:intergenic 40.0%
! GTTAACCTAGTTCTTCTCAG+TGG + tig0022428:89746-89765 Msa1400290:intron 40.0%
CTTAACCACTGAGAAGAACT+AGG - tig0022428:89754-89773 None:intergenic 40.0%
TTACGGAAGTTGTGCTAACA+TGG + tig0022428:89981-90000 Msa1400290:intron 40.0%
ACCAAAACATCTCTGAGCTT+TGG + tig0022428:90076-90095 Msa1400290:intron 40.0%
CCAAAACATCTCTGAGCTTT+GGG + tig0022428:90077-90096 Msa1400290:intron 40.0%
AACTCAGCTCTCAATTGAGA+AGG - tig0022428:90110-90129 None:intergenic 40.0%
AACTCCATACTTGGTCAGAA+AGG - tig0022428:90179-90198 None:intergenic 40.0%
TTCCCTCTTTAAATGGTGGT+TGG + tig0022428:90215-90234 Msa1400290:intron 40.0%
CTTCCAACCACCATTTAAAG+AGG - tig0022428:90221-90240 None:intergenic 40.0%
CTCTTTAAATGGTGGTTGGA+AGG + tig0022428:90219-90238 Msa1400290:intron 40.0%
GGAAAATTATCTGCATTGGG+GGG - tig0022428:90294-90313 None:intergenic 40.0%
TTTGTATCTTGACACGTCAC+TGG + tig0022428:90501-90520 Msa1400290:intron 40.0%
TGATCTGTTCATGAGCAGTA+TGG + tig0022428:90639-90658 Msa1400290:intron 40.0%
GATCTGTTCATGAGCAGTAT+GGG + tig0022428:90640-90659 Msa1400290:intron 40.0%
! GGAATCATTACCTTTGGTTC+CGG - tig0022428:90683-90702 None:intergenic 40.0%
CCTTCAAAAATGACAGAGTC+GGG - tig0022428:90793-90812 None:intergenic 40.0%
AGGTTTGTGCCATCAAATGA+GGG - tig0022428:90931-90950 None:intergenic 40.0%
! GCCAAAAGTATGACATGGAA+TGG - tig0022428:91130-91149 None:intergenic 40.0%
CTAACCAATCATGTCTTCCT+TGG - tig0022428:91226-91245 None:intergenic 40.0%
! CAAGGAAGACATGATTGGTT+AGG + tig0022428:91224-91243 Msa1400290:intron 40.0%
ATCACAAGGCAAACCTGAAT+GGG + tig0022428:91326-91345 Msa1400290:CDS 40.0%
GGTATCTGTCCTATCAAACT+GGG + tig0022428:91347-91366 Msa1400290:CDS 40.0%
AAAAATCACGGTCTGTATCC+TGG - tig0022428:91393-91412 None:intergenic 40.0%
TAACGATGTACCGAGAAATG+AGG + tig0022428:91621-91640 Msa1400290:three_prime_UTR 40.0%
TGAAGGAAAAACGCAAATCC+AGG - tig0022428:91725-91744 None:intergenic 40.0%
GGCATCAATCGAATATGTCT+AGG - tig0022428:91797-91816 None:intergenic 40.0%
TGAGTGTAAGAGAGGAAGAG+GGG - tig0022428:85938-85957 None:intergenic 45.0%
GTTGAGTGTAAGAGAGGAAG+AGG - tig0022428:85940-85959 None:intergenic 45.0%
AGGAGAGTTGAGTGTAAGAG+AGG - tig0022428:85946-85965 None:intergenic 45.0%
GTGAGAGTGAGAAGAAGAAC+CGG - tig0022428:85985-86004 None:intergenic 45.0%
GGTTGAACTCCAAATTACCG+AGG + tig0022428:86567-86586 Msa1400290:intron 45.0%
! AGCTTTCACGGCAGATTTTC+GGG - tig0022428:86732-86751 None:intergenic 45.0%
! CAGCTTTCACGGCAGATTTT+CGG - tig0022428:86733-86752 None:intergenic 45.0%
! GTCAGGGTATTTGGTCCATA+AGG + tig0022428:86792-86811 Msa1400290:CDS 45.0%
! GTGTTCTTCTAGGGAGGATT+TGG + tig0022428:86879-86898 Msa1400290:intron 45.0%
CTACCTATGCACAAGGACAA+GGG + tig0022428:86926-86945 Msa1400290:CDS 45.0%
TGGAGCAGTTGACGATGATA+TGG + tig0022428:87114-87133 Msa1400290:CDS 45.0%
AACGACGGACAAACCTTGTT+TGG - tig0022428:87184-87203 None:intergenic 45.0%
AATAGGCAGTGTGCAAGTGA+GGG - tig0022428:87762-87781 None:intergenic 45.0%
TAATAGGCAGTGTGCAAGTG+AGG - tig0022428:87763-87782 None:intergenic 45.0%
! GACAAAAGGGGTGTGTATGA+GGG - tig0022428:87852-87871 None:intergenic 45.0%
! TGACAAAAGGGGTGTGTATG+AGG - tig0022428:87853-87872 None:intergenic 45.0%
TGAAACCCCGACATAGATAG+GGG + tig0022428:87903-87922 Msa1400290:intron 45.0%
TGTATCCCCCTATCTATGTC+GGG - tig0022428:87912-87931 None:intergenic 45.0%
CTGTATCCCCCTATCTATGT+CGG - tig0022428:87913-87932 None:intergenic 45.0%
TAGTCTCAACCAATCACGTG+TGG + tig0022428:88018-88037 Msa1400290:intron 45.0%
CTGAATACATACCACGTGTG+AGG + tig0022428:88085-88104 Msa1400290:intron 45.0%
GGACCCTTAGCTGACAATTA+TGG - tig0022428:88201-88220 None:intergenic 45.0%
! GAGCTCAAAGGTGCGTTATT+CGG + tig0022428:88572-88591 Msa1400290:intron 45.0%
! TTGCAAAGGTATGGCCTAAG+AGG - tig0022428:89414-89433 None:intergenic 45.0%
! CCCAAAGCTCAGAGATGTTT+TGG - tig0022428:90080-90099 None:intergenic 45.0%
AGCTGAGTTCGACATTTCTC+CGG + tig0022428:90121-90140 Msa1400290:intron 45.0%
! ATAAGCTATGATTGGTCGGG+AGG - tig0022428:90253-90272 None:intergenic 45.0%
!!! CCCGACTCTGTCATTTTTGA+AGG + tig0022428:90790-90809 Msa1400290:intron 45.0%
GTTTCAGCTTGCCAAACTCA+AGG + tig0022428:90818-90837 Msa1400290:CDS 45.0%
ATGATTCATCAACCGCTTGG+TGG + tig0022428:90844-90863 Msa1400290:CDS 45.0%
TTTGTGCCATCAAATGAGGG+GGG - tig0022428:90928-90947 None:intergenic 45.0%
GTTTGTGCCATCAAATGAGG+GGG - tig0022428:90929-90948 None:intergenic 45.0%
GGTTTGTGCCATCAAATGAG+GGG - tig0022428:90930-90949 None:intergenic 45.0%
GAGGTTTGTGCCATCAAATG+AGG - tig0022428:90932-90951 None:intergenic 45.0%
ATCATGTCTTCCTTGGCACA+TGG - tig0022428:91219-91238 None:intergenic 45.0%
TGTGCCAAGGAAGACATGAT+TGG + tig0022428:91219-91238 Msa1400290:intron 45.0%
CAGCATTTCATTTGCCTGAG+AGG - tig0022428:91305-91324 None:intergenic 45.0%
CATCACAAGGCAAACCTGAA+TGG + tig0022428:91325-91344 Msa1400290:CDS 45.0%
GATAGGACAGATACCCATTC+AGG - tig0022428:91342-91361 None:intergenic 45.0%
GGGTATCTGTCCTATCAAAC+TGG + tig0022428:91346-91365 Msa1400290:CDS 45.0%
!! AAAGGCTGAAGAGCTTTGAG+AGG - tig0022428:91472-91491 None:intergenic 45.0%
TCTCAAAGCTCTTCAGCCTT+TGG + tig0022428:91471-91490 Msa1400290:CDS 45.0%
CAAATCCAGGATCCACGTTA+AGG - tig0022428:91712-91731 None:intergenic 45.0%
!! AAATATTTATATGTAAAATT+AGG + tig0022428:88647-88666 Msa1400290:intron 5.0%
!!! TTTTTAATAAAAAAAATTTC+TGG + tig0022428:91942-91961 Msa1400290:three_prime_UTR 5.0%
GAGTGTAAGAGAGGAAGAGG+GGG - tig0022428:85937-85956 None:intergenic 50.0%
TGAGAAGAAGAACCGGTGGT+GGG - tig0022428:85978-85997 None:intergenic 50.0%
AGAGTGAGAAGAAGAACCGG+TGG - tig0022428:85982-86001 None:intergenic 50.0%
CCTTCGAACTCTTTGCTCTC+CGG + tig0022428:86017-86036 Msa1400290:CDS 50.0%
CTTCGAACTCTTTGCTCTCC+GGG + tig0022428:86018-86037 Msa1400290:CDS 50.0%
GGGAGGAAACCTCGGTAATT+TGG - tig0022428:86579-86598 None:intergenic 50.0%
ATTACCGAGGTTTCCTCCCT+CGG + tig0022428:86580-86599 Msa1400290:intron 50.0%
TCTGCCGTGAAAGCTGTGTA+TGG + tig0022428:86737-86756 Msa1400290:CDS 50.0%
!! ATCAATTTTGGGGACCCGAG+AGG + tig0022428:86762-86781 Msa1400290:CDS 50.0%
! GGAGTTCACGTCAGGGTATT+TGG + tig0022428:86783-86802 Msa1400290:CDS 50.0%
CCTTGTCCTTGTGCATAGGT+AGG - tig0022428:86928-86947 None:intergenic 50.0%
CCTACCTATGCACAAGGACA+AGG + tig0022428:86925-86944 Msa1400290:CDS 50.0%
ACCAGCTGTAACTGATCCTC+CGG - tig0022428:87371-87390 None:intergenic 50.0%
ACACAGACAGTGGACACATC+AGG - tig0022428:87558-87577 None:intergenic 50.0%
GATGTGTCCACTGTCTGTGT+TGG + tig0022428:87558-87577 Msa1400290:CDS 50.0%
GTCCACTGTCTGTGTTGGAT+TGG + tig0022428:87563-87582 Msa1400290:CDS 50.0%
! CACTGTCTGTGTTGGATTGG+CGG + tig0022428:87566-87585 Msa1400290:CDS 50.0%
GAAACCCCGACATAGATAGG+GGG + tig0022428:87904-87923 Msa1400290:intron 50.0%
GTATCCCCCTATCTATGTCG+GGG - tig0022428:87911-87930 None:intergenic 50.0%
CGACATAGATAGGGGGATAC+AGG + tig0022428:87911-87930 Msa1400290:intron 50.0%
ATAACTTAAAGGACCGCGGG+AGG + tig0022428:88908-88927 Msa1400290:intron 50.0%
AATAGGCCAAATACCTCCCG+CGG - tig0022428:88924-88943 None:intergenic 50.0%
CTGAACACAAGCGCTATGAG+AGG + tig0022428:89638-89657 Msa1400290:intron 50.0%
!! TCTGGGTTTCTAGCTGCGAA+TGG - tig0022428:89668-89687 None:intergenic 50.0%
CTAACATGGCATCCGATGCA+TGG + tig0022428:89995-90014 Msa1400290:intron 50.0%
TTCGACATTTCTCCGGAGCA+GGG + tig0022428:90128-90147 Msa1400290:intron 50.0%
ATAGTACCATCTCCCTGCTC+CGG - tig0022428:90143-90162 None:intergenic 50.0%
! GGAGCTTTTCTGCTTAGTGC+CGG + tig0022428:90661-90680 Msa1400290:CDS 50.0%
!! CAACCGCTTGGTGGTTTTCA+AGG + tig0022428:90853-90872 Msa1400290:CDS 50.0%
CCTCCTTGAAAACCACCAAG+CGG - tig0022428:90859-90878 None:intergenic 50.0%
!! CGCTTGGTGGTTTTCAAGGA+GGG + tig0022428:90857-90876 Msa1400290:CDS 50.0%
ATGAGGGGGGGAAGAAAACA+GGG - tig0022428:90915-90934 None:intergenic 50.0%
AATGAGGGGGGGAAGAAAAC+AGG - tig0022428:90916-90935 None:intergenic 50.0%
TTCTTCCCCCCCTCATTTGA+TGG + tig0022428:90919-90938 Msa1400290:intron 50.0%
TTGTGCCATCAAATGAGGGG+GGG - tig0022428:90927-90946 None:intergenic 50.0%
GGGATATCATCCATGTGCCA+AGG + tig0022428:91206-91225 Msa1400290:intron 50.0%
CTGCAGAAGAGGGTAAAGAC+CGG + tig0022428:91497-91516 Msa1400290:CDS 50.0%
TGCAGAAGAGGGTAAAGACC+GGG + tig0022428:91498-91517 Msa1400290:CDS 50.0%
AGCTTCCTTAACGTGGATCC+TGG + tig0022428:91704-91723 Msa1400290:three_prime_UTR 50.0%
! AGAAGAAGAACCGGTGGTGG+GGG - tig0022428:85976-85995 None:intergenic 55.0%
GAGAAGAAGAACCGGTGGTG+GGG - tig0022428:85977-85996 None:intergenic 55.0%
GTGAGAAGAAGAACCGGTGG+TGG - tig0022428:85979-85998 None:intergenic 55.0%
CCGGAGAGCAAAGAGTTCGA+AGG - tig0022428:86020-86039 None:intergenic 55.0%
TTACCGAGGTTTCCTCCCTC+GGG + tig0022428:86581-86600 Msa1400290:intron 55.0%
ACCCTGACGTGAACTCCTCT+CGG - tig0022428:86780-86799 None:intergenic 55.0%
TGGCCCTTGTCCTTGTGCAT+AGG - tig0022428:86932-86951 None:intergenic 55.0%
AAACGCTCCTGCACCATTGG+GGG - tig0022428:86955-86974 None:intergenic 55.0%
GAAACGCTCCTGCACCATTG+GGG - tig0022428:86956-86975 None:intergenic 55.0%
GGAAACGCTCCTGCACCATT+GGG - tig0022428:86957-86976 None:intergenic 55.0%
TGGAAACGCTCCTGCACCAT+TGG - tig0022428:86958-86977 None:intergenic 55.0%
CGTCAACTGCTCCACCACAA+CGG - tig0022428:87108-87127 None:intergenic 55.0%
CCAGCTGTAACTGATCCTCC+GGG - tig0022428:87370-87389 None:intergenic 55.0%
CGCCAATCCAACACAGACAG+TGG - tig0022428:87568-87587 None:intergenic 55.0%
!! TCTGTGTTGGATTGGCGGCT+AGG + tig0022428:87571-87590 Msa1400290:CDS 55.0%
ACATACCACGTGTGAGGGCA+AGG + tig0022428:88091-88110 Msa1400290:intron 55.0%
CATACCACGTGTGAGGGCAA+GGG + tig0022428:88092-88111 Msa1400290:intron 55.0%
ATACCACGTGTGAGGGCAAG+GGG + tig0022428:88093-88112 Msa1400290:intron 55.0%
!! AAAGGACCGCGGGAGGTATT+TGG + tig0022428:88915-88934 Msa1400290:intron 55.0%
!! GGGTTTCTAGCTGCGAATGG+CGG - tig0022428:89665-89684 None:intergenic 55.0%
GGGTACACAGCTCCATGCAT+CGG - tig0022428:90010-90029 None:intergenic 55.0%
CATGGAGCTGTGTACCCTCT+TGG + tig0022428:90013-90032 Msa1400290:intron 55.0%
GTTCGACATTTCTCCGGAGC+AGG + tig0022428:90127-90146 Msa1400290:intron 55.0%
ATTTCTCCGGAGCAGGGAGA+TGG + tig0022428:90134-90153 Msa1400290:intron 55.0%
! CTGCTTAGTGCCGGAACCAA+AGG + tig0022428:90670-90689 Msa1400290:CDS 55.0%
!! CCGCTTGGTGGTTTTCAAGG+AGG + tig0022428:90856-90875 Msa1400290:CDS 55.0%
CCTTTGGCAGCTGCAGAAGA+GGG + tig0022428:91487-91506 Msa1400290:CDS 55.0%
CCTCTTCTTTCCCCCACCAC+CGG + tig0022428:85963-85982 Msa1400290:CDS 60.0%
TACCGAGGTTTCCTCCCTCG+GGG + tig0022428:86582-86601 Msa1400290:intron 60.0%
ACCCGAGAGGAGTTCACGTC+AGG + tig0022428:86775-86794 Msa1400290:CDS 60.0%
CCCTGACGTGAACTCCTCTC+GGG - tig0022428:86779-86798 None:intergenic 60.0%
CCCGAGAGGAGTTCACGTCA+GGG + tig0022428:86776-86795 Msa1400290:CDS 60.0%
CCCGGAGGATCAGTTACAGC+TGG + tig0022428:87367-87386 Msa1400290:CDS 60.0%
TACCACGTGTGAGGGCAAGG+GGG + tig0022428:88094-88113 Msa1400290:intron 60.0%
GCCTTTGGCAGCTGCAGAAG+AGG + tig0022428:91486-91505 Msa1400290:CDS 60.0%
CCCTCTTCTGCAGCTGCCAA+AGG - tig0022428:91490-91509 None:intergenic 60.0%
!! CCGGTGGTGGGGGAAAGAAG+AGG - tig0022428:85966-85985 None:intergenic 65.0%
TTTCCTCCCTCGGGGCCTGA+AGG + tig0022428:86590-86609 Msa1400290:intron 65.0%
CTACGGGAAGGGGGTCCTTC+AGG - tig0022428:86608-86627 None:intergenic 65.0%
AGGACAAGGGCCACCCCCAA+TGG + tig0022428:86939-86958 Msa1400290:CDS 65.0%
TTCCCCCTTGCCCTCACACG+TGG - tig0022428:88099-88118 None:intergenic 65.0%
GGCCCCGAGGGAGGAAACCT+CGG - tig0022428:86587-86606 None:intergenic 70.0%
AGGGCCACCCCCAATGGTGC+AGG + tig0022428:86945-86964 Msa1400290:CDS 70.0%
CGCTCCTGCACCATTGGGGG+TGG - tig0022428:86952-86971 None:intergenic 70.0%
GGTCCTTCAGGCCCCGAGGG+AGG - tig0022428:86596-86615 None:intergenic 75.0%
GGGGGTCCTTCAGGCCCCGA+GGG - tig0022428:86599-86618 None:intergenic 75.0%
AGGGGGTCCTTCAGGCCCCG+AGG - tig0022428:86600-86619 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
tig0022428 gene 85787 91996 85787 ID=Msa1400290;Name=Msa1400290
tig0022428 mRNA 85787 91996 85787 ID=Msa1400290-mRNA-1;Parent=Msa1400290;Name=Msa1400290-mRNA-1;_AED=0.10;_eAED=0.10;_QI=125|1|1|1|1|1|9|462|307
tig0022428 exon 85787 86039 85787 ID=Msa1400290-mRNA-1:exon:17638;Parent=Msa1400290-mRNA-1
tig0022428 exon 86694 86813 86694 ID=Msa1400290-mRNA-1:exon:17639;Parent=Msa1400290-mRNA-1
tig0022428 exon 86891 87005 86891 ID=Msa1400290-mRNA-1:exon:17640;Parent=Msa1400290-mRNA-1
tig0022428 exon 87097 87189 87097 ID=Msa1400290-mRNA-1:exon:17641;Parent=Msa1400290-mRNA-1
tig0022428 exon 87343 87388 87343 ID=Msa1400290-mRNA-1:exon:17642;Parent=Msa1400290-mRNA-1
tig0022428 exon 87520 87592 87520 ID=Msa1400290-mRNA-1:exon:17643;Parent=Msa1400290-mRNA-1
tig0022428 exon 90657 90691 90657 ID=Msa1400290-mRNA-1:exon:17644;Parent=Msa1400290-mRNA-1
tig0022428 exon 90812 90900 90812 ID=Msa1400290-mRNA-1:exon:17645;Parent=Msa1400290-mRNA-1
tig0022428 exon 91310 91996 91310 ID=Msa1400290-mRNA-1:exon:17646;Parent=Msa1400290-mRNA-1
tig0022428 five_prime_UTR 85787 85911 85787 ID=Msa1400290-mRNA-1:five_prime_utr;Parent=Msa1400290-mRNA-1
tig0022428 CDS 85912 86039 85912 ID=Msa1400290-mRNA-1:cds;Parent=Msa1400290-mRNA-1
tig0022428 CDS 86694 86813 86694 ID=Msa1400290-mRNA-1:cds;Parent=Msa1400290-mRNA-1
tig0022428 CDS 86891 87005 86891 ID=Msa1400290-mRNA-1:cds;Parent=Msa1400290-mRNA-1
tig0022428 CDS 87097 87189 87097 ID=Msa1400290-mRNA-1:cds;Parent=Msa1400290-mRNA-1
tig0022428 CDS 87343 87388 87343 ID=Msa1400290-mRNA-1:cds;Parent=Msa1400290-mRNA-1
tig0022428 CDS 87520 87592 87520 ID=Msa1400290-mRNA-1:cds;Parent=Msa1400290-mRNA-1
tig0022428 CDS 90657 90691 90657 ID=Msa1400290-mRNA-1:cds;Parent=Msa1400290-mRNA-1
tig0022428 CDS 90812 90900 90812 ID=Msa1400290-mRNA-1:cds;Parent=Msa1400290-mRNA-1
tig0022428 CDS 91310 91534 91310 ID=Msa1400290-mRNA-1:cds;Parent=Msa1400290-mRNA-1
tig0022428 three_prime_UTR 91535 91996 91535 ID=Msa1400290-mRNA-1:three_prime_utr;Parent=Msa1400290-mRNA-1
Gene Sequence

>Msa1400290

ATGTCTCATTCTTCTCTTCTCACCCCCTCTTCCTCTCTTACACTCAACTCTCCTCTTCTTTCCCCCACCACCGGTTCTTCTTCTCACTCTCACAATCTTTCTCTTCCTTCGAACTCTTTGCTCTCCGGGAAATTGAGGAAATCTGTAGAATTTAGAAAGATTACCCGAAAATCTGCCGTGAAAGCTGTGTATGGTGATCAATTTTGGGGACCCGAGAGGAGTTCACGTCAGGGTATTTGGTCCATAAGGGAGGATTTGGGAGTTCCGTCTTCGCCTTATTTTCCTACCTATGCACAAGGACAAGGGCCACCCCCAATGGTGCAGGAGCGTTTCCAGAGTGTTATAAGTCAACTTTTCCAATATAGAATAATCCGTTGTGGTGGAGCAGTTGACGATGATATGGCAAATATCATAGTTTCTCAGCTCCTTTATCTTGATGCTGTTGATCCAAACAAGGATATTGTCATGTATGTAAATTCTCCCGGAGGATCAGTTACAGCTGGTATGGCAATATTTGATACAATGAGGCATATCAGACCTGATGTGTCCACTGTCTGTGTTGGATTGGCGGCTAGTATGGGAGCTTTTCTGCTTAGTGCCGGAACCAAAGGAAAACGTTTCAGCTTGCCAAACTCAAGGATAATGATTCATCAACCGCTTGGTGGTTTTCAAGGAGGGCAAACTGACATAGATATTCAGGCAAATGAAATGCTGCATCACAAGGCAAACCTGAATGGGTATCTGTCCTATCAAACTGGGCAAAGTTTAGAGAAAATTAACCAGGATACAGACCGTGATTTTTTCATGAGTGCAAAAGAAGCCAAAGAATATGGACTCATCGATGGTGTCATCATGAATCCTCTCAAAGCTCTTCAGCCTTTGGCAGCTGCAGAAGAGGGTAAAGACCGGGCTATTATTTCCTAA

Protein sequence

>Msa1400290

MSHSSLLTPSSSLTLNSPLLSPTTGSSSHSHNLSLPSNSLLSGKLRKSVEFRKITRKSAVKAVYGDQFWGPERSSRQGIWSIREDLGVPSSPYFPTYAQGQGPPPMVQERFQSVISQLFQYRIIRCGGAVDDDMANIIVSQLLYLDAVDPNKDIVMYVNSPGGSVTAGMAIFDTMRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRFSLPNSRIMIHQPLGGFQGGQTDIDIQANEMLHHKANLNGYLSYQTGQSLEKINQDTDRDFFMSAKEAKEYGLIDGVIMNPLKALQPLAAAEEGKDRAIIS*