AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0659230

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0659230 MtrunA17_Chr8g0383861 95.595 227 9 1 205 430 1 227 8.77e-144 409
Msa0659230 MtrunA17_Chr8g0383861 82.870 216 14 2 10 202 11 226 3.01e-113 331
Msa0659230 MtrunA17_Chr8g0383881 84.000 225 25 3 205 428 1 215 7.99e-124 358
Msa0659230 MtrunA17_Chr8g0383881 72.300 213 32 3 10 202 11 216 8.96e-101 299
Msa0659230 MtrunA17_Chr8g0383941 79.736 227 36 3 205 429 1 219 6.02e-123 355
Msa0659230 MtrunA17_Chr8g0383941 70.370 216 31 5 10 201 12 218 6.61e-91 274
Msa0659230 MtrunA17_Chr8g0383901 79.646 226 36 2 205 429 1 217 1.95e-118 344
Msa0659230 MtrunA17_Chr8g0383901 73.430 207 39 2 10 201 11 216 1.62e-89 270
Msa0659230 MtrunA17_Chr8g0383871 78.761 226 46 2 205 429 1 225 1.11e-115 337
Msa0659230 MtrunA17_Chr8g0383871 66.822 214 49 2 10 201 11 224 1.80e-85 260
Msa0659230 MtrunA17_Chr8g0383931 78.414 227 47 2 205 429 1 227 4.57e-105 310
Msa0659230 MtrunA17_Chr8g0383931 71.429 217 38 3 9 201 10 226 1.40e-80 248
Msa0659230 MtrunA17_Chr8g0383921 77.465 213 43 3 205 415 1 210 3.13e-103 305
Msa0659230 MtrunA17_Chr8g0383921 69.652 201 40 3 9 188 10 210 1.59e-79 244
Msa0659230 MtrunA17_Chr3g0129671 62.500 232 77 3 205 430 1 228 1.98e-95 286
Msa0659230 MtrunA17_Chr3g0129671 56.561 221 64 6 9 201 10 226 4.37e-67 213
Msa0659230 MtrunA17_Chr3g0128771 54.412 136 56 2 257 391 36 166 1.48e-41 145
Msa0659230 MtrunA17_Chr3g0128771 44.882 127 51 2 56 163 40 166 8.67e-28 108
Msa0659230 MtrunA17_Chr7g0244851 49.315 146 66 3 246 390 15 153 1.93e-41 145
Msa0659230 MtrunA17_Chr7g0244851 41.139 158 71 5 44 180 18 174 9.95e-27 105
Msa0659230 MtrunA17_Chr3g0144241 47.260 146 64 4 262 402 26 163 5.14e-34 125
Msa0659230 MtrunA17_Chr3g0144241 42.254 142 60 5 55 176 24 163 2.80e-24 99.4
Msa0659230 MtrunA17_Chr5g0407431 47.445 137 62 3 261 395 29 157 7.67e-34 126
Msa0659230 MtrunA17_Chr5g0407431 40.764 157 65 7 55 186 28 181 1.00e-24 101
Msa0659230 MtrunA17_Chr8g0370171 49.231 130 51 5 261 386 22 140 4.36e-32 120
Msa0659230 MtrunA17_Chr8g0370171 39.496 119 56 2 56 158 22 140 1.82e-20 89.0
Msa0659230 MtrunA17_Chr2g0297011 38.961 154 82 3 234 387 4 145 1.17e-30 115
Msa0659230 MtrunA17_Chr2g0297011 32.667 150 74 4 29 159 4 145 2.13e-17 79.3
Msa0659230 MtrunA17_Chr4g0052671 39.474 152 78 4 237 387 11 149 2.16e-28 109
Msa0659230 MtrunA17_Chr4g0052671 34.646 127 60 3 54 159 25 149 4.91e-17 78.2
Msa0659230 MtrunA17_Chr1g0167811 29.221 154 92 4 243 387 21 166 2.35e-20 91.3
Msa0659230 MtrunA17_Chr7g0273051 33.553 152 79 5 248 390 28 166 3.60e-19 88.6
Msa0659230 MtrunA17_Chr7g0273051 31.944 144 69 5 43 162 28 166 1.20e-12 68.9
Msa0659230 MtrunA17_Chr1g0203541 44.898 98 50 1 300 393 88 185 3.95e-19 85.5
Msa0659230 MtrunA17_Chr1g0203541 42.169 83 29 1 102 165 103 185 8.83e-12 64.3
Msa0659230 MtrunA17_Chr8g0345361 45.570 79 40 2 317 394 92 168 1.98e-18 84.3
Msa0659230 MtrunA17_Chr8g0345361 40.260 77 32 3 104 166 92 168 2.06e-12 67.0
Msa0659230 MtrunA17_Chr1g0191601 32.886 149 89 5 246 390 32 173 2.67e-18 86.3
Msa0659230 MtrunA17_Chr1g0191601 30.137 146 74 5 41 162 32 173 6.93e-12 66.6
Msa0659230 MtrunA17_Chr4g0030831 43.210 81 45 1 307 386 74 154 2.90e-18 82.0
Msa0659230 MtrunA17_Chr3g0113811 30.872 149 96 3 260 404 22 167 1.31e-17 80.1
Msa0659230 MtrunA17_Chr6g0470751 36.667 120 72 2 269 386 51 168 1.36e-17 83.2
Msa0659230 MtrunA17_Chr6g0470751 31.410 156 77 5 23 158 23 168 8.91e-11 62.8
Msa0659230 MtrunA17_Chr7g0276591 57.895 57 24 0 336 392 93 149 3.44e-17 81.6
Msa0659230 MtrunA17_Chr7g0276591 58.537 41 17 0 124 164 109 149 8.15e-11 62.8
Msa0659230 MtrunA17_Chr4g0067591 44.595 74 34 2 315 386 78 146 4.03e-17 81.3
Msa0659230 MtrunA17_Chr5g0437361 37.405 131 72 4 284 413 44 165 8.64e-17 77.8
Msa0659230 MtrunA17_Chr5g0426871 39.796 98 54 2 294 389 88 182 9.75e-17 81.6
Msa0659230 MtrunA17_Chr4g0027761 43.590 78 39 2 316 393 99 171 1.73e-16 77.8
Msa0659230 MtrunA17_Chr4g0027761 35.526 76 37 2 101 165 97 171 7.78e-11 61.2
Msa0659230 MtrunA17_Chr6g0486651 32.468 154 94 2 234 387 19 162 1.77e-16 80.5
Msa0659230 MtrunA17_Chr3g0132491 43.590 78 42 1 315 390 105 182 2.55e-16 80.1
Msa0659230 MtrunA17_Chr7g0274741 39.744 78 45 1 316 391 69 146 3.46e-16 76.3
Msa0659230 MtrunA17_Chr5g0426781 32.759 116 75 2 277 390 86 200 3.56e-16 79.3
Msa0659230 MtrunA17_Chr5g0430781 50.000 76 34 2 316 391 86 157 3.92e-16 77.0
Msa0659230 MtrunA17_Chr2g0327791 61.702 47 18 0 340 386 131 177 4.18e-16 77.0
Msa0659230 MtrunA17_Chr3g0105441 43.590 78 41 1 316 390 101 178 5.37e-16 77.4
Msa0659230 MtrunA17_Chr3g0118071 37.755 98 59 2 293 389 53 149 1.01e-15 75.9
Msa0659230 MtrunA17_Chr4g0013561 29.508 122 82 2 307 428 75 192 1.05e-15 76.3
Msa0659230 MtrunA17_Chr4g0013561 25.294 170 100 4 79 224 50 216 2.35e-11 63.5
Msa0659230 MtrunA17_Chr1g0198201 37.079 89 56 0 303 391 47 135 1.16e-15 75.9
Msa0659230 MtrunA17_Chr7g0246761 39.091 110 58 3 317 425 63 164 1.24e-15 75.1
Msa0659230 MtrunA17_Chr4g0073141 43.038 79 45 0 312 390 112 190 3.17e-15 77.8
Msa0659230 MtrunA17_Chr2g0325141 35.338 133 68 4 272 386 1 133 3.18e-15 72.8
Msa0659230 MtrunA17_Chr3g0118061 39.130 92 55 1 299 389 58 149 3.26e-15 74.3
Msa0659230 MtrunA17_Chr2g0295571 39.241 79 47 1 308 386 84 161 4.58e-15 75.5
Msa0659230 MtrunA17_Chr8g0381731 37.500 80 49 1 317 396 148 226 4.84e-15 75.5
Msa0659230 MtrunA17_Chr5g0411081 39.241 79 47 1 312 390 117 194 7.02e-15 75.9
Msa0659230 MtrunA17_Chr6g0451031 43.478 69 37 1 318 386 45 111 7.43e-15 71.2
Msa0659230 MtrunA17_Chr7g0274711 39.744 78 45 1 314 389 64 141 7.73e-15 72.4
Msa0659230 MtrunA17_Chr8g0366561 32.530 166 86 5 230 390 44 188 8.13e-15 75.5
Msa0659230 MtrunA17_Chr8g0366561 28.283 198 87 5 25 195 44 213 7.96e-11 63.2
Msa0659230 MtrunA17_Chr2g0307411 32.787 122 73 2 269 390 34 146 8.89e-15 72.8
Msa0659230 MtrunA17_Chr3g0133001 43.056 72 40 1 315 386 128 198 9.71e-15 75.5
Msa0659230 MtrunA17_Chr1g0184631 39.744 78 45 1 314 389 65 142 1.23e-14 72.0
Msa0659230 MtrunA17_Chr4g0050041 42.857 70 39 1 317 386 126 194 1.96e-14 74.3
Msa0659230 MtrunA17_Chr1g0186661 31.967 122 69 3 285 394 62 181 2.14e-14 73.9
Msa0659230 MtrunA17_Chr1g0184171 38.961 77 47 0 310 386 96 172 3.04e-14 73.6
Msa0659230 MtrunA17_Chr5g0409211 30.714 140 78 4 257 386 6 136 3.89e-14 70.5
Msa0659230 MtrunA17_Chr7g0248841 42.857 63 36 0 339 401 99 161 4.29e-14 69.7
Msa0659230 MtrunA17_Chr2g0325161 41.026 78 41 1 314 386 88 165 4.72e-14 71.6
Msa0659230 MtrunA17_Chr2g0279431 60.000 45 18 0 342 386 159 203 6.70e-14 72.8
Msa0659230 MtrunA17_Chr5g0426881 39.744 78 45 1 315 390 112 189 7.93e-14 72.8
Msa0659230 MtrunA17_Chr4g0060981 34.694 98 62 1 290 387 122 217 1.06e-13 70.1
Msa0659230 MtrunA17_Chr2g0300331 34.043 141 65 5 255 386 90 211 1.44e-13 70.1
Msa0659230 MtrunA17_Chr6g0451161 31.852 135 81 3 265 389 71 204 1.63e-13 71.6
Msa0659230 MtrunA17_Chr3g0126931 41.892 74 42 1 317 390 101 173 1.83e-13 71.2
Msa0659230 MtrunA17_Chr3g0123631 36.842 95 53 2 302 389 26 120 2.33e-13 68.6
Msa0659230 MtrunA17_Chr5g0427431 40.278 72 42 1 315 386 132 202 2.60e-13 71.2
Msa0659230 MtrunA17_Chr5g0433861 35.115 131 75 3 263 386 21 148 2.69e-13 70.5
Msa0659230 MtrunA17_Chr7g0269491 37.234 94 49 3 318 402 67 159 2.83e-13 68.6
Msa0659230 MtrunA17_Chr3g0143301 38.554 83 47 2 304 386 35 113 2.92e-13 66.6
Msa0659230 MtrunA17_Chr5g0444161 43.421 76 40 2 313 386 153 227 3.02e-13 69.3
Msa0659230 MtrunA17_Chr5g0413841 41.772 79 41 2 313 389 112 187 3.77e-13 70.5
Msa0659230 MtrunA17_Chr8g0348151 38.571 70 40 1 317 386 90 156 4.08e-13 68.2
Msa0659230 MtrunA17_Chr1g0177041 39.726 73 40 2 317 386 74 145 4.91e-13 67.0
Msa0659230 MtrunA17_Chr5g0396591 37.500 80 49 1 308 386 203 282 5.07e-13 69.3
Msa0659230 MtrunA17_Chr5g0396611 38.750 80 48 1 308 386 303 382 5.48e-13 70.1
Msa0659230 MtrunA17_Chr3g0123641 37.349 83 50 1 309 389 38 120 5.55e-13 68.2
Msa0659230 MtrunA17_Chr4g0059281 39.189 74 44 1 313 386 102 174 6.28e-13 69.3
Msa0659230 MtrunA17_Chr8g0350741 41.096 73 43 0 323 395 68 140 6.73e-13 67.0
Msa0659230 MtrunA17_Chr8g0371291 41.333 75 39 1 315 389 156 225 8.11e-13 67.8
Msa0659230 MtrunA17_Chr8g0388201 38.961 77 46 1 311 386 313 389 9.12e-13 69.7
Msa0659230 MtrunA17_Chr8g0364881 37.975 79 48 1 313 391 64 141 1.20e-12 68.6
Msa0659230 MtrunA17_Chr3g0081611 27.407 135 89 3 256 386 21 150 1.48e-12 65.9
Msa0659230 MtrunA17_Chr5g0409201 53.488 43 20 0 344 386 93 135 1.61e-12 65.5
Msa0659230 MtrunA17_Chr7g0237871 43.478 69 38 1 320 387 133 201 1.78e-12 67.0
Msa0659230 MtrunA17_Chr3g0126611 39.437 71 42 1 317 386 303 373 2.45e-12 68.2
Msa0659230 MtrunA17_Chr6g0451051 39.726 73 43 1 314 386 37 108 2.51e-12 64.7
Msa0659230 MtrunA17_Chr7g0248831 32.143 112 62 3 317 427 80 178 2.63e-12 65.1
Msa0659230 MtrunA17_Chr5g0406031 37.662 77 47 1 314 389 158 234 2.64e-12 66.2
Msa0659230 MtrunA17_Chr8g0343571 60.000 45 18 0 342 386 83 127 3.36e-12 64.7
Msa0659230 MtrunA17_Chr3g0124531 49.231 65 28 3 327 390 55 115 4.54e-12 63.9
Msa0659230 MtrunA17_Chr2g0317671 32.075 106 67 1 289 389 99 204 5.43e-12 64.7
Msa0659230 MtrunA17_Chr1g0157091 36.111 72 42 1 315 386 46 113 5.88e-12 62.8
Msa0659230 MtrunA17_Chr8g0366521 32.824 131 78 3 263 386 21 148 6.75e-12 66.2
Msa0659230 MtrunA17_Chr5g0396601 39.437 71 42 1 317 386 322 392 7.25e-12 66.6
Msa0659230 MtrunA17_Chr5g0444141 43.421 76 40 2 313 386 188 262 8.67e-12 65.5
Msa0659230 MtrunA17_Chr8g0345381 53.488 43 20 0 344 386 53 95 1.01e-11 62.8
Msa0659230 MtrunA17_Chr4g0010171 32.292 96 65 0 307 402 76 171 1.03e-11 63.5
Msa0659230 MtrunA17_Chr7g0275601 34.667 75 44 1 317 386 76 150 1.06e-11 63.2
Msa0659230 MtrunA17_Chr7g0274721 38.356 73 43 1 314 386 65 135 1.80e-11 62.8
Msa0659230 MtrunA17_Chr8g0369571 53.488 43 20 0 344 386 90 132 1.82e-11 62.8
Msa0659230 MtrunA17_Chr3g0117821 36.905 84 52 1 304 386 44 127 2.02e-11 62.0
Msa0659230 MtrunA17_Chr8g0345401 53.488 43 20 0 344 386 49 91 2.07e-11 61.6
Msa0659230 MtrunA17_Chr8g0388231 41.667 72 39 2 317 386 309 379 3.35e-11 64.7
Msa0659230 MtrunA17_Chr3g0120011 33.673 98 60 3 307 404 86 178 6.01e-11 62.0
Msa0659230 MtrunA17_Chr8g0347101 36.620 71 44 1 317 386 286 356 8.53e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0659230 AT1G49230.1 52.752 218 83 4 215 427 17 219 7.27e-69 218
Msa0659230 AT1G49230.1 45.455 209 80 5 10 195 17 214 1.73e-47 162
Msa0659230 AT1G49210.1 47.907 215 91 4 225 430 23 225 5.62e-59 192
Msa0659230 AT1G49210.1 43.602 211 80 5 20 201 23 223 3.74e-44 154
Msa0659230 AT1G49220.1 48.792 207 80 5 225 418 23 216 4.78e-58 191
Msa0659230 AT1G49220.1 41.791 201 78 5 20 191 23 213 6.02e-41 146
Msa0659230 AT1G49200.1 46.296 216 93 5 225 430 24 226 1.79e-57 189
Msa0659230 AT1G49200.1 41.667 204 80 5 20 194 24 217 1.35e-43 152
Msa0659230 AT3G18773.1 44.053 227 107 7 210 430 8 220 2.46e-52 175
Msa0659230 AT3G18773.1 39.286 224 86 8 10 201 13 218 1.28e-37 136
Msa0659230 AT5G05280.1 52.817 142 60 2 250 391 26 160 1.23e-42 148
Msa0659230 AT5G05280.1 47.407 135 55 2 45 163 26 160 1.59e-31 119
Msa0659230 AT3G10910.1 54.135 133 57 2 261 390 29 160 1.82e-40 142
Msa0659230 AT3G10910.1 43.871 155 49 7 48 177 26 167 2.42e-26 105
Msa0659230 AT1G20823.1 42.771 166 82 3 227 390 3 157 5.24e-36 131
Msa0659230 AT1G20823.1 37.349 166 68 6 22 162 3 157 5.34e-23 96.3
Msa0659230 AT1G76410.1 44.371 151 75 2 245 392 8 152 2.06e-35 129
Msa0659230 AT1G76410.1 39.041 146 67 3 40 164 8 152 3.95e-24 99.4
Msa0659230 AT5G01880.1 45.198 177 71 5 216 391 1 152 8.58e-30 114
Msa0659230 AT5G01880.1 31.579 190 71 7 11 172 1 159 2.17e-17 79.7
Msa0659230 AT2G17450.1 41.912 136 58 4 262 389 25 147 4.22e-29 112
Msa0659230 AT2G17450.1 37.302 126 55 3 57 161 25 147 7.97e-19 84.3
Msa0659230 AT5G47610.1 36.875 160 89 2 227 386 2 149 1.51e-27 107
Msa0659230 AT5G47610.1 29.605 152 88 2 22 158 2 149 3.01e-14 70.9
Msa0659230 AT4G35480.1 39.456 147 69 3 258 390 19 159 2.30e-26 105
Msa0659230 AT4G35480.1 32.571 175 76 5 53 193 19 185 6.89e-17 79.3
Msa0659230 AT4G17245.1 38.406 138 60 3 255 386 27 145 2.06e-23 96.7
Msa0659230 AT4G17245.1 33.929 112 62 3 58 158 35 145 2.73e-11 62.4
Msa0659230 AT3G05200.1 33.333 156 97 3 269 417 49 204 6.50e-19 88.6
Msa0659230 AT2G27940.1 39.604 101 58 2 303 403 101 198 3.29e-18 84.0
Msa0659230 AT1G72200.1 31.515 165 106 5 249 408 47 209 4.03e-18 86.3
Msa0659230 AT1G72310.1 48.718 78 38 1 313 390 98 173 6.01e-18 84.7
Msa0659230 AT4G09120.1 35.766 137 77 4 252 386 38 165 2.50e-17 83.2
Msa0659230 AT4G09110.1 34.711 121 71 3 268 386 51 165 3.34e-17 82.4
Msa0659230 AT1G35330.1 34.884 129 73 5 270 389 48 174 3.94e-17 82.4
Msa0659230 AT1G53820.1 44.872 78 39 2 313 389 91 165 4.54e-17 82.0
Msa0659230 AT1G53820.1 38.667 75 33 2 100 161 91 165 3.47e-11 64.3
Msa0659230 AT3G14320.1 49.296 71 34 1 317 387 63 131 5.64e-17 79.7
Msa0659230 AT4G40070.1 35.507 138 68 4 268 395 49 175 9.44e-17 81.3
Msa0659230 AT3G16720.1 38.462 104 56 4 313 415 90 186 1.28e-16 80.5
Msa0659230 AT5G57750.1 41.333 75 44 0 313 387 91 165 5.27e-16 77.0
Msa0659230 AT1G28040.1 37.374 99 59 2 291 386 197 295 6.90e-16 78.6
Msa0659230 AT1G04360.1 29.545 132 83 2 265 386 45 176 7.76e-16 79.3
Msa0659230 AT1G22500.1 30.000 150 101 3 257 404 31 178 8.99e-16 79.0
Msa0659230 AT2G35000.1 32.576 132 82 4 265 390 51 181 9.40e-16 79.0
Msa0659230 AT4G30400.1 42.667 75 43 0 312 386 102 176 1.11e-15 79.3
Msa0659230 AT1G74410.1 38.000 100 55 2 290 389 129 221 1.18e-15 76.3
Msa0659230 AT5G27420.1 45.570 79 39 2 316 391 94 171 1.73e-15 78.2
Msa0659230 AT4G09100.1 40.506 79 45 2 310 386 49 127 2.00e-15 73.2
Msa0659230 AT2G20030.1 47.143 70 36 1 317 386 98 166 3.42e-15 77.4
Msa0659230 AT4G17905.1 66.667 45 15 0 342 386 153 197 3.49e-15 76.6
Msa0659230 AT4G17905.2 66.667 45 15 0 342 386 179 223 3.59e-15 76.6
Msa0659230 AT2G46493.1 42.667 75 42 1 313 386 106 180 4.21e-15 73.9
Msa0659230 AT2G18650.1 43.590 78 44 0 313 390 95 172 5.13e-15 77.0
Msa0659230 AT4G15975.1 37.363 91 55 1 299 389 33 121 5.22e-15 74.7
Msa0659230 AT5G17600.1 43.056 72 40 1 315 386 114 184 5.22e-15 76.6
Msa0659230 AT4G09130.1 45.205 73 38 1 316 386 90 162 5.67e-15 76.3
Msa0659230 AT1G23980.1 31.250 176 93 7 238 390 20 190 7.02e-15 76.3
Msa0659230 AT2G25410.1 42.553 94 49 2 295 386 279 369 7.74e-15 76.3
Msa0659230 AT3G03550.1 59.184 49 20 0 342 390 157 205 7.77e-15 75.9
Msa0659230 AT2G46494.1 29.197 137 91 2 256 386 222 358 1.28e-14 75.5
Msa0659230 AT4G28890.1 43.662 71 39 1 317 387 97 166 2.01e-14 75.1
Msa0659230 AT4G10150.1 30.000 130 85 3 261 390 34 157 2.38e-14 72.8
Msa0659230 AT2G35420.1 44.444 72 39 1 315 386 75 145 3.09e-14 72.8
Msa0659230 AT3G48030.2 37.931 87 48 1 309 389 88 174 3.54e-14 72.8
Msa0659230 AT5G05810.1 43.056 72 40 1 315 386 118 188 3.66e-14 74.3
Msa0659230 AT3G19140.1 36.538 104 62 2 284 387 23 122 3.67e-14 69.7
Msa0659230 AT5G10380.1 40.000 75 44 1 312 386 104 177 4.86e-14 72.8
Msa0659230 AT2G34990.1 29.771 131 90 1 258 386 8 138 5.97e-14 72.8
Msa0659230 AT3G48030.1 37.931 87 48 1 309 389 166 252 6.79e-14 73.2
Msa0659230 AT2G34990.2 29.771 131 90 1 258 386 30 160 7.28e-14 72.8
Msa0659230 AT4G10160.1 32.031 128 75 4 267 390 24 143 7.85e-14 70.9
Msa0659230 AT1G32361.1 37.398 123 69 5 287 409 101 215 7.93e-14 72.8
Msa0659230 AT3G18930.2 37.391 115 56 5 317 420 120 229 1.11e-13 72.8
Msa0659230 AT3G18930.3 37.391 115 56 5 317 420 120 229 1.11e-13 72.8
Msa0659230 AT3G18930.1 37.391 115 56 5 317 420 120 229 1.11e-13 72.8
Msa0659230 AT5G07040.1 27.612 134 84 3 256 387 15 137 1.25e-13 68.9
Msa0659230 AT5G43420.1 27.950 161 90 4 247 386 25 180 1.25e-13 72.4
Msa0659230 AT4G17920.1 31.538 130 78 5 265 389 32 155 1.54e-13 71.2
Msa0659230 AT1G72220.1 57.778 45 19 0 342 386 175 219 1.87e-13 72.0
Msa0659230 AT5G42200.1 39.189 74 44 1 313 386 74 146 2.03e-13 68.6
Msa0659230 AT2G35910.1 39.474 76 45 1 317 392 121 195 2.30e-13 69.3
Msa0659230 AT5G66070.5 44.000 75 39 2 315 389 150 221 2.61e-13 69.3
Msa0659230 AT5G66070.1 44.000 75 39 2 315 389 150 221 2.61e-13 69.3
Msa0659230 AT3G62690.1 48.438 64 32 1 323 386 93 155 3.45e-13 69.7
Msa0659230 AT5G66070.2 44.000 75 39 2 315 389 174 245 3.85e-13 69.3
Msa0659230 AT5G06490.1 33.663 101 52 2 317 411 96 187 3.95e-13 68.6
Msa0659230 AT4G33565.1 52.941 51 24 0 342 392 215 265 4.31e-13 70.9
Msa0659230 AT5G58580.1 34.653 101 66 0 315 415 109 209 5.03e-13 70.1
Msa0659230 AT2G46495.2 40.789 76 43 1 313 386 259 334 7.40e-13 69.7
Msa0659230 AT2G46495.1 40.789 76 43 1 313 386 287 362 7.44e-13 70.1
Msa0659230 AT1G33480.1 30.000 100 68 1 317 416 75 172 7.55e-13 68.9
Msa0659230 AT5G53110.1 39.437 71 42 1 317 386 302 372 1.14e-12 69.7
Msa0659230 AT2G34000.1 26.984 126 87 2 265 387 11 134 1.96e-12 65.1
Msa0659230 AT2G46160.1 36.145 83 46 1 317 392 104 186 2.23e-12 66.6
Msa0659230 AT2G46160.2 36.145 83 46 1 317 392 104 186 2.23e-12 66.6
Msa0659230 AT5G36001.1 63.043 46 17 0 341 386 261 306 2.37e-12 68.2
Msa0659230 AT2G47560.1 40.000 80 45 2 308 386 73 150 2.41e-12 66.6
Msa0659230 AT2G18670.1 34.667 75 49 0 312 386 78 152 3.27e-12 65.5
Msa0659230 AT3G11110.1 37.349 83 52 0 304 386 67 149 4.70e-12 64.3
Msa0659230 AT5G40250.1 50.000 48 24 0 343 390 142 189 5.96e-12 67.4
Msa0659230 AT2G42360.1 36.000 75 48 0 312 386 76 150 9.52e-12 65.1
Msa0659230 AT4G35840.1 39.506 81 41 2 314 389 159 236 1.01e-11 65.1
Msa0659230 AT2G17730.1 38.158 76 45 1 314 387 164 239 1.93e-11 64.3
Msa0659230 AT4G26400.2 39.506 81 41 2 306 386 210 282 2.39e-11 65.5
Msa0659230 AT4G26400.1 39.506 81 41 2 306 386 210 282 2.39e-11 65.5
Msa0659230 AT3G61550.1 28.800 125 70 3 310 424 92 207 2.40e-11 63.5
Msa0659230 AT4G26580.1 37.037 81 45 2 314 389 254 333 4.97e-11 64.3
Msa0659230 AT4G26580.2 37.037 81 45 2 314 389 254 333 4.97e-11 64.3
Msa0659230 AT2G42350.1 37.333 75 45 1 312 386 70 142 5.25e-11 62.8
Msa0659230 AT3G20395.1 33.663 101 63 2 289 389 120 216 9.60e-11 62.0

Find 83 sgRNAs with CRISPR-Local

Find 247 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCATCATAAGGTGCGCTTTA+AGG 0.098073 4_3:-69526821 Msa0659230:CDS
AATTCAACCAACTCATATTT+TGG 0.106711 4_3:-69526924 Msa0659230:CDS
AATTCAACTAACTCATATTT+TGG 0.108921 4_3:-69530729 Msa0659230:CDS
TGAGTTGAAACTACCAAATT+TGG 0.175122 4_3:-69526673 Msa0659230:CDS
ATTGATAATCAATTGGATTT+TGG 0.213343 4_3:+69526982 None:intergenic
ATTGATGATCAATTGGATTT+TGG 0.218436 4_3:+69530787 None:intergenic
GCACCTTATGATGGAGTTTA+AGG 0.230395 4_3:+69526830 None:intergenic
CGGTGCCAGAAACTATTATT+AGG 0.257137 4_3:-69526455 Msa0659230:CDS
CGGTGCCAGAAACTATTATT+AGG 0.257137 4_3:-69530257 Msa0659230:CDS
TGGAAACCATGATTGCATTT+AGG 0.272632 4_3:+69526591 None:intergenic
CGAAGAAGAGCCGTTGTTTA+GGG 0.291613 4_3:+69526785 None:intergenic
TCGAAGAAGAGCCGTTGTTT+AGG 0.297762 4_3:+69526784 None:intergenic
ACACACTCTGTATCCAAATT+TGG 0.302122 4_3:+69526660 None:intergenic
TGAATCCTAATAATAGTTTC+TGG 0.307133 4_3:+69526450 None:intergenic
AATATGAGTTGGTTGAATTA+TGG 0.317058 4_3:+69526928 None:intergenic
TGAATCCTAATAATAGTTTC+TGG 0.344198 4_3:+69530252 None:intergenic
TGGAAACCATGATTGCATTT+AGG 0.379959 4_3:+69530396 None:intergenic
CAACAACTCTTCACCTCAAT+TGG 0.382798 4_3:-69526754 Msa0659230:CDS
GAGACTTGTCGAAAGATTGT+TGG 0.388982 4_3:-69530306 Msa0659230:CDS
TTGCATTAAACTTCATCATA+AGG 0.400685 4_3:-69530638 Msa0659230:CDS
AGTTACATTCAAAAGCTTCA+TGG 0.410074 4_3:+69530220 None:intergenic
GAGACTTGTCGAAAGATTGT+TGG 0.413029 4_3:-69526501 Msa0659230:CDS
CAACAACAATCCACCTCAAT+TGG 0.419352 4_3:-69530559 Msa0659230:CDS
GTTGGTGATTGATAATCAAT+TGG 0.420758 4_3:+69526975 None:intergenic
GGAAGCACCACCTATGTTGC+CGG 0.443914 4_3:-69526475 Msa0659230:CDS
ATGTTCGTTGCATCGACAAA+TGG 0.447158 4_3:-69526569 Msa0659230:CDS
ATGTTCGTTGCATCGACAAA+TGG 0.447158 4_3:-69530374 Msa0659230:CDS
AAGGAGGCATTGTCTGCACT+TGG 0.450962 4_3:+69530329 None:intergenic
GTTGGTGATTGATGATCAAT+TGG 0.451468 4_3:+69530780 None:intergenic
ATAGTTACGTTCAAAAGCTT+CGG 0.462496 4_3:+69526416 None:intergenic
TTATGGTTGTGTGTGAGAAC+AGG 0.463446 4_3:+69526945 None:intergenic
AGCAAATAAGAGCACACAAT+AGG 0.463910 4_3:+69526859 None:intergenic
TCAGTTGAATAACTTACTGT+TGG 0.468597 4_3:+69526693 None:intergenic
TCAGTTGAATAACTTACTGT+TGG 0.468597 4_3:+69530498 None:intergenic
ATTCCTTTGTTAGCCAATTG+AGG 0.468663 4_3:+69526741 None:intergenic
TTGTCGAAAGATTGTTGGAT+TGG 0.474737 4_3:-69526496 Msa0659230:CDS
CCTTAAAGCGCACCTTATGA+TGG 0.477521 4_3:+69526821 None:intergenic
ATTCCTTTGTTGACCAATTG+AGG 0.479348 4_3:+69530546 None:intergenic
CAGTTGAATAACTTACTGTT+GGG 0.481542 4_3:+69526694 None:intergenic
CAGTTGAATAACTTACTGTT+GGG 0.481542 4_3:+69530499 None:intergenic
AGCACCGCCTCCTATGTTGC+CGG 0.494818 4_3:-69530277 Msa0659230:CDS
GTGTGTGAGAACAGGGGAGC+TGG 0.495001 4_3:+69526953 None:intergenic
ACGAATTCCAAAATATGAGT+TGG 0.498815 4_3:+69526917 None:intergenic
TTGTTGAATCTCACACAAGA+AGG 0.499335 4_3:-69530818 Msa0659230:CDS
AGGAGGCATTGTCTGCACTT+GGG 0.509273 4_3:+69530330 None:intergenic
TTGTAGAATCTCACACAAGA+AGG 0.511006 4_3:-69527013 Msa0659230:CDS
TTGCCTTAAACTCCATCATA+AGG 0.515596 4_3:-69526833 Msa0659230:CDS
AATATGAGTTAGTTGAATTG+TGG 0.521333 4_3:+69530733 None:intergenic
TGGAGAAGAGGTAAAAGTAA+AGG 0.522983 4_3:+69530849 None:intergenic
ATGGAAGAGTGGTGAAGTAA+AGG 0.523047 4_3:+69527043 None:intergenic
GTTTCTGGCACCGGCAACAT+AGG 0.524339 4_3:+69530267 None:intergenic
CTAATAATAGTTTCTGGCAC+CGG 0.527248 4_3:+69526456 None:intergenic
CTAATAATAGTTTCTGGCAC+CGG 0.527248 4_3:+69530258 None:intergenic
GGAATTCACGAAAGGTGAAA+AGG 0.529132 4_3:-69530430 Msa0659230:intron
GTTTCTGGCACCGGCAACAT+AGG 0.529637 4_3:+69526465 None:intergenic
GGAGGCATTGTCTGCACTTG+GGG 0.530430 4_3:+69530331 None:intergenic
TTGTCGAAAGATTGTTGGAT+CGG 0.534154 4_3:-69530301 Msa0659230:CDS
TGTCTCTCAGAGTTCACAAA+AGG 0.544000 4_3:-69526633 Msa0659230:CDS
TATGGTTGTGTGTGAGAACA+GGG 0.557986 4_3:+69526946 None:intergenic
GTGAGAACAGGGGACGTTGT+TGG 0.562716 4_3:+69530762 None:intergenic
ATTTGTCGATGCAACGAACA+TGG 0.562919 4_3:+69526571 None:intergenic
ATTTGTCGATGCAACGAACA+TGG 0.562919 4_3:+69530376 None:intergenic
TAACAAAGGAATCAAGAAGA+AGG 0.567789 4_3:-69526730 Msa0659230:CDS
TCTGGCACCGGCAACATAGG+AGG 0.567868 4_3:+69530270 None:intergenic
CCTTTGTTGACCAATTGAGG+TGG 0.571148 4_3:+69530549 None:intergenic
AGGAGGCACTGTCTGCACTT+AGG 0.573168 4_3:+69526525 None:intergenic
GGCACCGGCAACATAGGAGG+CGG 0.580709 4_3:+69530273 None:intergenic
GAGATTCAACAAGAAGCTCA+TGG 0.584576 4_3:+69530829 None:intergenic
ACAAGAAGCTCATGGAGAAG+AGG 0.587733 4_3:+69530837 None:intergenic
GAGATTCTACAAGAAGCTCA+TGG 0.595637 4_3:+69527024 None:intergenic
CAATCTTTCGACAAGTCTCA+AGG 0.597223 4_3:+69526505 None:intergenic
CAATCTTTCGACAAGTCTCA+AGG 0.597223 4_3:+69530310 None:intergenic
TCAAAAGCTTCATGGTCTAG+TGG 0.599238 4_3:+69530228 None:intergenic
CCACCTCAATTGGTCAACAA+AGG 0.601823 4_3:-69530549 Msa0659230:CDS
TCACCTCAATTGGCTAACAA+AGG 0.606400 4_3:-69526744 Msa0659230:CDS
TCAAAAGCTTCGGCGTCTAG+CGG 0.624371 4_3:+69526426 None:intergenic
ACAAGAAGCTCATGGAAGAG+TGG 0.629363 4_3:+69527032 None:intergenic
TCTGGCACCGGCAACATAGG+TGG 0.632227 4_3:+69526468 None:intergenic
GTGAGAACAGGGGAGCTGGT+TGG 0.655380 4_3:+69526957 None:intergenic
TCGAACGTAGCCCTAAACAA+CGG 0.719891 4_3:-69526795 Msa0659230:CDS
TCTTTCGACAAGTCTCAAGG+AGG 0.763633 4_3:+69530313 None:intergenic
ATGGTTGTGTGTGAGAACAG+GGG 0.776032 4_3:+69526947 None:intergenic
TCTTTCGACAAGTCTCAAGG+AGG 0.776052 4_3:+69526508 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATTGAATAATTTACTTTT+TGG + chr4_3:69527393-69527412 None:intergenic 10.0%
!!! TTATTTTATTTTTTTGACAA+GGG + chr4_3:69527956-69527975 None:intergenic 10.0%
!!! TTTATTTTATTTTTTTGACA+AGG + chr4_3:69527957-69527976 None:intergenic 10.0%
!!! CATTATTTTATTTTTTTACA+GGG + chr4_3:69528101-69528120 None:intergenic 10.0%
!!! TCATTATTTTATTTTTTTAC+AGG + chr4_3:69528102-69528121 None:intergenic 10.0%
!! AAAATATAAATATAACAATG+AGG - chr4_3:69528209-69528228 Msa0659230:intron 10.0%
!! TTAAATAATTCAAAAAAATG+AGG - chr4_3:69528295-69528314 Msa0659230:intron 10.0%
!!! ACTAATATAATTATATTTTG+TGG + chr4_3:69528993-69529012 None:intergenic 10.0%
!!! AATATTTTTTCTAAGATTAA+AGG + chr4_3:69529718-69529737 None:intergenic 10.0%
!! TTATAAGATTATGAATTCAT+TGG + chr4_3:69527248-69527267 None:intergenic 15.0%
!! TACTATTATTATCTATTCTA+AGG - chr4_3:69527622-69527641 Msa0659230:intron 15.0%
!!! ATAATTTATTTTTCAATCAG+CGG - chr4_3:69527760-69527779 Msa0659230:intron 15.0%
!!! ATTACTACAAACTTTTTATA+GGG + chr4_3:69527823-69527842 None:intergenic 15.0%
!!! TTTTATTAGAAAAATATCGA+TGG + chr4_3:69528171-69528190 None:intergenic 15.0%
!!! TAAAGTTTTGAGTAAAAATA+TGG + chr4_3:69528391-69528410 None:intergenic 15.0%
!!! TATTTTTACTCAAAACTTTA+AGG - chr4_3:69528391-69528410 Msa0659230:intron 15.0%
!! ACAAATTTGTCTTTAATAAA+TGG + chr4_3:69528907-69528926 None:intergenic 15.0%
!!! ATATAATTATATTTTGTGGA+TGG + chr4_3:69528989-69529008 None:intergenic 15.0%
!! GTATATTATTTCATTTAATC+TGG + chr4_3:69529954-69529973 None:intergenic 15.0%
!! AATTAACTATTATTGGTATT+TGG + chr4_3:69530048-69530067 None:intergenic 15.0%
!! AAGTTTGAATTAACTATTAT+TGG + chr4_3:69530055-69530074 None:intergenic 15.0%
!! TTAATATGTTAGAATTGATA+TGG + chr4_3:69530095-69530114 None:intergenic 15.0%
!!! AATTCAACTAACTCATATTT+TGG - chr4_3:69526533-69526552 Msa0659230:CDS 20.0%
!! AGCTACATTTAAAAATCTTA+AGG + chr4_3:69526654-69526673 None:intergenic 20.0%
!! TAATATAAATGACTACAAGT+AGG - chr4_3:69527465-69527484 Msa0659230:intron 20.0%
!! ATAGTAATTTCTTTGATCAT+AGG + chr4_3:69527608-69527627 None:intergenic 20.0%
!!! CATTACTACAAACTTTTTAT+AGG + chr4_3:69527824-69527843 None:intergenic 20.0%
!! AAAATATCTTTACTGCAAAA+GGG + chr4_3:69528000-69528019 None:intergenic 20.0%
!! AAAAATATCTTTACTGCAAA+AGG + chr4_3:69528001-69528020 None:intergenic 20.0%
!!! TTTTCTTAGAAAAATATCGA+TGG + chr4_3:69528033-69528052 None:intergenic 20.0%
!! AAAATATCTTTACTGCAAAA+GGG + chr4_3:69528000-69528019 None:intergenic 20.0%
!! AAAAATATCTTTACTGCAAA+AGG + chr4_3:69528001-69528020 None:intergenic 20.0%
!!! TATGGTGAATAAATCTTTTA+AGG + chr4_3:69528373-69528392 None:intergenic 20.0%
!! AGAAAATAAATATACAAGAG+AGG + chr4_3:69528435-69528454 None:intergenic 20.0%
!! TTGGTAAAAAAAAATAGTGT+TGG + chr4_3:69528501-69528520 None:intergenic 20.0%
!!! GACATATAAATATTTAAGAC+TGG + chr4_3:69528550-69528569 None:intergenic 20.0%
!!! TCATTAAAGTTGTTTGATTT+TGG + chr4_3:69529073-69529092 None:intergenic 20.0%
!! ATCAAAATTATTGAAGTTGT+TGG + chr4_3:69529338-69529357 None:intergenic 20.0%
!! CTAGTTAATTAATAATCCAA+CGG - chr4_3:69529505-69529524 Msa0659230:intron 20.0%
!!! TTCTAAGATTAAAGGTTTAA+AGG + chr4_3:69529710-69529729 None:intergenic 20.0%
!! ATATATTCACTATTCCTTTA+TGG - chr4_3:69529754-69529773 Msa0659230:intron 20.0%
!! TATATTCACTATTCCTTTAT+GGG - chr4_3:69529755-69529774 Msa0659230:intron 20.0%
!! TCATATATGTTAGATATCAT+AGG + chr4_3:69529821-69529840 None:intergenic 20.0%
!!! ATTGATAATCAATTGGATTT+TGG + chr4_3:69530283-69530302 None:intergenic 20.0%
!!! ATTGATGATCAATTGGATTT+TGG + chr4_3:69526478-69526497 None:intergenic 25.0%
! AATATGAGTTAGTTGAATTG+TGG + chr4_3:69526532-69526551 None:intergenic 25.0%
! TTGCATTAAACTTCATCATA+AGG - chr4_3:69526624-69526643 Msa0659230:CDS 25.0%
! TGAATCCTAATAATAGTTTC+TGG + chr4_3:69527013-69527032 None:intergenic 25.0%
!! AAGCTTTTGAATGTAACTAT+AGG - chr4_3:69527047-69527066 Msa0659230:CDS 25.0%
!! AGCTTTTGAATGTAACTATA+GGG - chr4_3:69527048-69527067 Msa0659230:CDS 25.0%
! AAGTAAATATGTGTATGAAG+TGG - chr4_3:69527313-69527332 Msa0659230:intron 25.0%
! AGTAAATATGTGTATGAAGT+GGG - chr4_3:69527314-69527333 Msa0659230:intron 25.0%
!!! AATTTACTTTTTGGCTTTGT+CGG + chr4_3:69527384-69527403 None:intergenic 25.0%
!! AAAGATCGAATACAAGATTT+TGG - chr4_3:69527438-69527457 Msa0659230:intron 25.0%
! TCAAATAGAGAAAACTGAAA+AGG + chr4_3:69527572-69527591 None:intergenic 25.0%
!!! ATTATCTATTCTAAGGTGAA+TGG - chr4_3:69527629-69527648 Msa0659230:intron 25.0%
!!! TTATCTATTCTAAGGTGAAT+GGG - chr4_3:69527630-69527649 Msa0659230:intron 25.0%
!!! CAGTAAAGATATTTTTCAAG+TGG - chr4_3:69528005-69528024 Msa0659230:intron 25.0%
!!! CAGTAAAGATATTTTTCAAG+TGG - chr4_3:69528005-69528024 Msa0659230:intron 25.0%
! GCATGTATTCCTAAAATTTA+TGG + chr4_3:69528241-69528260 None:intergenic 25.0%
! CAAAAAAATGAGGATACTAT+TGG - chr4_3:69528305-69528324 Msa0659230:intron 25.0%
! AGTCTCATATCTATTAGAAA+TGG + chr4_3:69528458-69528477 None:intergenic 25.0%
!! ATAAATAGTGTTGGAATTCT+TGG + chr4_3:69528520-69528539 None:intergenic 25.0%
! GGTATGAGAAAGATAAATTA+AGG + chr4_3:69528886-69528905 None:intergenic 25.0%
!!! CTCTTTATGCTATTTTAACA+TGG + chr4_3:69529033-69529052 None:intergenic 25.0%
! CATGTTAAAATAGCATAAAG+AGG - chr4_3:69529031-69529050 Msa0659230:intron 25.0%
! CAATAAGAAGAGAGAAAAAA+AGG + chr4_3:69529099-69529118 None:intergenic 25.0%
!!! CTTTTTTTCTCTCTTCTTAT+TGG - chr4_3:69529097-69529116 Msa0659230:intron 25.0%
! TCACAAAAGTTGTTTAAAAG+TGG - chr4_3:69529189-69529208 Msa0659230:intron 25.0%
!!! TATTTTGAGAGTGAGATTTA+TGG + chr4_3:69529237-69529256 None:intergenic 25.0%
! GTTGCAAGTAAAAAAAACAA+TGG - chr4_3:69529601-69529620 Msa0659230:intron 25.0%
! TTGTTATATTATCCTAGACA+GGG + chr4_3:69530135-69530154 None:intergenic 25.0%
!!! AATATGAGTTGGTTGAATTA+TGG + chr4_3:69530337-69530356 None:intergenic 25.0%
!! AATTCAACCAACTCATATTT+TGG - chr4_3:69530338-69530357 Msa0659230:CDS 25.0%
!! ATTTTACCTAAATGCAATCA+TGG - chr4_3:69530665-69530684 Msa0659230:CDS 25.0%
! TGAATCCTAATAATAGTTTC+TGG + chr4_3:69527013-69527032 None:intergenic 25.0%
CAGTTGAATAACTTACTGTT+GGG + chr4_3:69526766-69526785 None:intergenic 30.0%
TCAGTTGAATAACTTACTGT+TGG + chr4_3:69526767-69526786 None:intergenic 30.0%
! ATTTTGCCTAAATGCAATCA+TGG - chr4_3:69526860-69526879 Msa0659230:CDS 30.0%
AGTTACATTCAAAAGCTTCA+TGG + chr4_3:69527045-69527064 None:intergenic 30.0%
TAGGGAAGAAAGTAGATAAA+TGG - chr4_3:69527066-69527085 Msa0659230:CDS 30.0%
GATCAACTTATTCTCAACAT+CGG + chr4_3:69527276-69527295 None:intergenic 30.0%
GTAAATATGTGTATGAAGTG+GGG - chr4_3:69527315-69527334 Msa0659230:intron 30.0%
!!! ATTTACTTTTTGGCTTTGTC+GGG + chr4_3:69527383-69527402 None:intergenic 30.0%
! ATCGAATACAAGATTTTGGA+AGG - chr4_3:69527442-69527461 Msa0659230:intron 30.0%
GACTACAAGTAGGAATATTA+TGG - chr4_3:69527475-69527494 Msa0659230:intron 30.0%
AGAAAACTGAAAAGGAGAAT+GGG + chr4_3:69527564-69527583 None:intergenic 30.0%
! TACAAACTTTTTATAGGGTG+GGG + chr4_3:69527818-69527837 None:intergenic 30.0%
! CTACAAACTTTTTATAGGGT+GGG + chr4_3:69527819-69527838 None:intergenic 30.0%
! ACTACAAACTTTTTATAGGG+TGG + chr4_3:69527820-69527839 None:intergenic 30.0%
TTGACAAGGGAAAAATATCT+TGG + chr4_3:69527943-69527962 None:intergenic 30.0%
! AGGTGTGATCCATAAATTTT+AGG - chr4_3:69528229-69528248 Msa0659230:intron 30.0%
AAAATGAGGATACTATTGGT+TGG - chr4_3:69528309-69528328 Msa0659230:intron 30.0%
! AAATGAGGATACTATTGGTT+GGG - chr4_3:69528310-69528329 Msa0659230:intron 30.0%
GGTGAAGTTATAAATAGTGT+TGG + chr4_3:69528529-69528548 None:intergenic 30.0%
!! TATACCTATGAGGCTATTTT+TGG + chr4_3:69528635-69528654 None:intergenic 30.0%
AACCAATGAATATACCTATG+AGG + chr4_3:69528645-69528664 None:intergenic 30.0%
GAATATAAATGTCCAGTACA+TGG - chr4_3:69528674-69528693 Msa0659230:intron 30.0%
AAACGACATATAATTTGGGA+TGG + chr4_3:69528708-69528727 None:intergenic 30.0%
!! TCCCAAATTATATGTCGTTT+TGG - chr4_3:69528708-69528727 Msa0659230:intron 30.0%
CCCAAAACGACATATAATTT+GGG + chr4_3:69528712-69528731 None:intergenic 30.0%
!!! CCCAAATTATATGTCGTTTT+GGG - chr4_3:69528709-69528728 Msa0659230:intron 30.0%
TCCCAAAACGACATATAATT+TGG + chr4_3:69528713-69528732 None:intergenic 30.0%
AGAACAATAGAGAGAGAAAA+AGG - chr4_3:69529123-69529142 Msa0659230:intron 30.0%
TTTAATTCCACTTTATGCCA+AGG + chr4_3:69529908-69529927 None:intergenic 30.0%
GGCATAAAGTGGAATTAAAA+TGG - chr4_3:69529909-69529928 Msa0659230:intron 30.0%
!! TCTGGCTTTATAATCAAGTA+GGG + chr4_3:69529936-69529955 None:intergenic 30.0%
!! ATCTGGCTTTATAATCAAGT+AGG + chr4_3:69529937-69529956 None:intergenic 30.0%
ATTACTACTAACTAGCAACT+AGG - chr4_3:69530020-69530039 Msa0659230:intron 30.0%
GTTAGAATTGATATGGTATC+TGG + chr4_3:69530088-69530107 None:intergenic 30.0%
TGTTATATTATCCTAGACAG+GGG + chr4_3:69530134-69530153 None:intergenic 30.0%
GTTGTTATATTATCCTAGAC+AGG + chr4_3:69530136-69530155 None:intergenic 30.0%
! AGCATACATGTTTTCTGTTA+GGG + chr4_3:69530192-69530211 None:intergenic 30.0%
! AAGCATACATGTTTTCTGTT+AGG + chr4_3:69530193-69530212 None:intergenic 30.0%
!! GTTGGTGATTGATAATCAAT+TGG + chr4_3:69530290-69530309 None:intergenic 30.0%
ACGAATTCCAAAATATGAGT+TGG + chr4_3:69526543-69526562 None:intergenic 30.0%
TAACAAAGGAATCAAGAAGA+AGG - chr4_3:69530532-69530551 Msa0659230:CDS 30.0%
CAGTTGAATAACTTACTGTT+GGG + chr4_3:69526766-69526785 None:intergenic 30.0%
TCAGTTGAATAACTTACTGT+TGG + chr4_3:69526767-69526786 None:intergenic 30.0%
! TGAGTTGAAACTACCAAATT+TGG - chr4_3:69530589-69530608 Msa0659230:CDS 30.0%
ATAGTTACGTTCAAAAGCTT+CGG + chr4_3:69530849-69530868 None:intergenic 30.0%
TGGAGAAGAGGTAAAAGTAA+AGG + chr4_3:69526416-69526435 None:intergenic 35.0%
TTGTTGAATCTCACACAAGA+AGG - chr4_3:69526444-69526463 Msa0659230:CDS 35.0%
!! GTTGGTGATTGATGATCAAT+TGG + chr4_3:69526485-69526504 None:intergenic 35.0%
ATTCCTTTGTTGACCAATTG+AGG + chr4_3:69526719-69526738 None:intergenic 35.0%
! TGAGTTGAAACTACCAAGTT+TGG - chr4_3:69526784-69526803 Msa0659230:CDS 35.0%
ATACACTCTGTATCCAAACT+TGG + chr4_3:69526800-69526819 None:intergenic 35.0%
AGAGTGTATTATATGCCTCT+CGG - chr4_3:69526811-69526830 Msa0659230:CDS 35.0%
TGGAAACCATGATTGCATTT+AGG + chr4_3:69526869-69526888 None:intergenic 35.0%
TTGTCGAAAGATTGTTGGAT+CGG - chr4_3:69526961-69526980 Msa0659230:CDS 35.0%
!! CTAATAATAGTTTCTGGCAC+CGG + chr4_3:69527007-69527026 None:intergenic 35.0%
GCTTGTTCACTAAAATCTAG+AGG - chr4_3:69527190-69527209 Msa0659230:intron 35.0%
!! CAGTTTGGTGTTTGTCTTTA+AGG + chr4_3:69527344-69527363 None:intergenic 35.0%
CTTAAAGACAAACACCAAAC+TGG - chr4_3:69527342-69527361 Msa0659230:intron 35.0%
! TTCTTTAGGTTTCACCAGTT+TGG + chr4_3:69527359-69527378 None:intergenic 35.0%
!!! TTTACTTTTTGGCTTTGTCG+GGG + chr4_3:69527382-69527401 None:intergenic 35.0%
GAGAAAACTGAAAAGGAGAA+TGG + chr4_3:69527565-69527584 None:intergenic 35.0%
GTACTTTACAGAAAAGAGTG+TGG + chr4_3:69527794-69527813 None:intergenic 35.0%
! ACAAACTTTTTATAGGGTGG+GGG + chr4_3:69527817-69527836 None:intergenic 35.0%
! AATGAGGATACTATTGGTTG+GGG - chr4_3:69528311-69528330 Msa0659230:intron 35.0%
GTTTAACCCATTGTCACTAA+CGG + chr4_3:69528341-69528360 None:intergenic 35.0%
!! ACTTTAAGGCATCAGAGATA+TGG - chr4_3:69528405-69528424 Msa0659230:intron 35.0%
CATTCCAAAAATAGCCTCAT+AGG - chr4_3:69528628-69528647 Msa0659230:intron 35.0%
AGCCTCATAGGTATATTCAT+TGG - chr4_3:69528640-69528659 Msa0659230:intron 35.0%
TAACAACCGAAACTTTGACA+AGG - chr4_3:69529302-69529321 Msa0659230:intron 35.0%
TTCTCACCTTGTCAAAGTTT+CGG + chr4_3:69529311-69529330 None:intergenic 35.0%
! CCATATATGTCGTTTGTTTG+AGG + chr4_3:69529398-69529417 None:intergenic 35.0%
CCTCAAACAAACGACATATA+TGG - chr4_3:69529395-69529414 Msa0659230:intron 35.0%
GAGCAAAAGTGAAAGAAGAT+AGG + chr4_3:69529452-69529471 None:intergenic 35.0%
TAACATGAGCCATCGAATTA+TGG + chr4_3:69529531-69529550 None:intergenic 35.0%
! TTTACTTGCAACGTACGTTT+TGG + chr4_3:69529593-69529612 None:intergenic 35.0%
ACAAGTCTGTATTGTGGAAA+AGG + chr4_3:69529628-69529647 None:intergenic 35.0%
TTGGCAACTGGATTTCATAA+TGG + chr4_3:69529873-69529892 None:intergenic 35.0%
AAAGACATAGTGATGATCAG+TGG - chr4_3:69529976-69529995 Msa0659230:intron 35.0%
TTGTAGAATCTCACACAAGA+AGG - chr4_3:69530249-69530268 Msa0659230:CDS 35.0%
! AGCAAATAAGAGCACACAAT+AGG + chr4_3:69526601-69526620 None:intergenic 35.0%
TTGCCTTAAACTCCATCATA+AGG - chr4_3:69530429-69530448 Msa0659230:intron 35.0%
ATTCCTTTGTTAGCCAATTG+AGG + chr4_3:69530524-69530543 None:intergenic 35.0%
ACACACTCTGTATCCAAATT+TGG + chr4_3:69530605-69530624 None:intergenic 35.0%
TGGAAACCATGATTGCATTT+AGG + chr4_3:69526869-69526888 None:intergenic 35.0%
TTGTCGAAAGATTGTTGGAT+TGG - chr4_3:69526961-69526980 Msa0659230:CDS 35.0%
!! CTAATAATAGTTTCTGGCAC+CGG + chr4_3:69527007-69527026 None:intergenic 35.0%
GAGATTCAACAAGAAGCTCA+TGG + chr4_3:69526436-69526455 None:intergenic 40.0%
!!! TGTGGTTTTGTGTGAGAACA+GGG + chr4_3:69526514-69526533 None:intergenic 40.0%
!!! TTGTGGTTTTGTGTGAGAAC+AGG + chr4_3:69526515-69526534 None:intergenic 40.0%
CAACAACAATCCACCTCAAT+TGG - chr4_3:69526703-69526722 Msa0659230:CDS 40.0%
GGAATTCACGAAAGGTGAAA+AGG - chr4_3:69526832-69526851 Msa0659230:CDS 40.0%
ATTTGTCGATGCAACGAACA+TGG + chr4_3:69526889-69526908 None:intergenic 40.0%
! ATGTTCGTTGCATCGACAAA+TGG - chr4_3:69526888-69526907 Msa0659230:CDS 40.0%
CAATCTTTCGACAAGTCTCA+AGG + chr4_3:69526955-69526974 None:intergenic 40.0%
GAGACTTGTCGAAAGATTGT+TGG - chr4_3:69526956-69526975 Msa0659230:CDS 40.0%
! CGGTGCCAGAAACTATTATT+AGG - chr4_3:69527005-69527024 Msa0659230:CDS 40.0%
TCAAAAGCTTCATGGTCTAG+TGG + chr4_3:69527037-69527056 None:intergenic 40.0%
! CAAACTTTTTATAGGGTGGG+GGG + chr4_3:69527816-69527835 None:intergenic 40.0%
! ATGGATGAAGTACCATGTAC+TGG + chr4_3:69528689-69528708 None:intergenic 40.0%
TAACTGTATGCATGTCGATG+TGG + chr4_3:69529284-69529303 None:intergenic 40.0%
AAGTGGACAAGTCTGTATTG+TGG + chr4_3:69529634-69529653 None:intergenic 40.0%
ACAATACAGACTTGTCCACT+TGG - chr4_3:69529633-69529652 Msa0659230:intron 40.0%
CTGTGTCTCTTTCTCTCATA+GGG - chr4_3:69529656-69529675 Msa0659230:intron 40.0%
! TATTCCTTTATGGGCTTGCT+GGG - chr4_3:69529764-69529783 Msa0659230:intron 40.0%
ACTTTATGCCAAGGAGAATG+TGG + chr4_3:69529899-69529918 None:intergenic 40.0%
ACATTCTCCTTGGCATAAAG+TGG - chr4_3:69529898-69529917 Msa0659230:intron 40.0%
CTATATATAGTCCCCTGTCT+AGG - chr4_3:69530120-69530139 Msa0659230:intron 40.0%
TTCTGTTAGGGAACTTGATG+AGG + chr4_3:69530180-69530199 None:intergenic 40.0%
ATGGAAGAGTGGTGAAGTAA+AGG + chr4_3:69530222-69530241 None:intergenic 40.0%
GAGATTCTACAAGAAGCTCA+TGG + chr4_3:69530241-69530260 None:intergenic 40.0%
TATGGTTGTGTGTGAGAACA+GGG + chr4_3:69530319-69530338 None:intergenic 40.0%
TTATGGTTGTGTGTGAGAAC+AGG + chr4_3:69530320-69530339 None:intergenic 40.0%
! GCACCTTATGATGGAGTTTA+AGG + chr4_3:69530435-69530454 None:intergenic 40.0%
CAACAACTCTTCACCTCAAT+TGG - chr4_3:69530508-69530527 Msa0659230:CDS 40.0%
TCACCTCAATTGGCTAACAA+AGG - chr4_3:69530518-69530537 Msa0659230:CDS 40.0%
TGTCTCTCAGAGTTCACAAA+AGG - chr4_3:69530629-69530648 Msa0659230:intron 40.0%
ATTTGTCGATGCAACGAACA+TGG + chr4_3:69526889-69526908 None:intergenic 40.0%
! ATGTTCGTTGCATCGACAAA+TGG - chr4_3:69526888-69526907 Msa0659230:CDS 40.0%
CAATCTTTCGACAAGTCTCA+AGG + chr4_3:69526955-69526974 None:intergenic 40.0%
GAGACTTGTCGAAAGATTGT+TGG - chr4_3:69526956-69526975 Msa0659230:CDS 40.0%
! CGGTGCCAGAAACTATTATT+AGG - chr4_3:69527005-69527024 Msa0659230:CDS 40.0%
ACAAGAAGCTCATGGAGAAG+AGG + chr4_3:69526428-69526447 None:intergenic 45.0%
!!! GTGGTTTTGTGTGAGAACAG+GGG + chr4_3:69526513-69526532 None:intergenic 45.0%
CCTTTGTTGACCAATTGAGG+TGG + chr4_3:69526716-69526735 None:intergenic 45.0%
CCACCTCAATTGGTCAACAA+AGG - chr4_3:69526713-69526732 Msa0659230:CDS 45.0%
TCTTTCGACAAGTCTCAAGG+AGG + chr4_3:69526952-69526971 None:intergenic 45.0%
GGAGAACCGTTAGTGACAAT+GGG - chr4_3:69528332-69528351 Msa0659230:intron 45.0%
TGTATGCATGTCGATGTGGA+TGG + chr4_3:69529280-69529299 None:intergenic 45.0%
!! TCACTTTTGCTCTTGTGACG+TGG - chr4_3:69529460-69529479 Msa0659230:intron 45.0%
ATCCAACGGCCATAATTCGA+TGG - chr4_3:69529519-69529538 Msa0659230:intron 45.0%
GCTGTGTCTCTTTCTCTCAT+AGG - chr4_3:69529655-69529674 Msa0659230:intron 45.0%
CTATTCCTTTATGGGCTTGC+TGG - chr4_3:69529763-69529782 Msa0659230:intron 45.0%
! TTGCTGGGTCCTTTGTTTAG+CGG - chr4_3:69529779-69529798 Msa0659230:intron 45.0%
!! TGCTGTTTCCCGCTAAACAA+AGG + chr4_3:69529791-69529810 None:intergenic 45.0%
TGTTAGGGAACTTGATGAGG+TGG + chr4_3:69530177-69530196 None:intergenic 45.0%
ACAAGAAGCTCATGGAAGAG+TGG + chr4_3:69530233-69530252 None:intergenic 45.0%
ATGGTTGTGTGTGAGAACAG+GGG + chr4_3:69530318-69530337 None:intergenic 45.0%
CCTTAAAGCGCACCTTATGA+TGG + chr4_3:69530444-69530463 None:intergenic 45.0%
CCATCATAAGGTGCGCTTTA+AGG - chr4_3:69530441-69530460 Msa0659230:intron 45.0%
TCGAACGTAGCCCTAAACAA+CGG - chr4_3:69530467-69530486 Msa0659230:intron 45.0%
CGAAGAAGAGCCGTTGTTTA+GGG + chr4_3:69530480-69530499 None:intergenic 45.0%
TCGAAGAAGAGCCGTTGTTT+AGG + chr4_3:69530481-69530500 None:intergenic 45.0%
TCTTTCGACAAGTCTCAAGG+AGG + chr4_3:69526952-69526971 None:intergenic 45.0%
!! TGTATATATAAATTTATATA+TGG + chr4_3:69527132-69527151 None:intergenic 5.0%
!!! AGATTTAATTTTTTTTTTTA+AGG + chr4_3:69527738-69527757 None:intergenic 5.0%
TGCCTCTCGGAATTCACGAA+AGG - chr4_3:69526824-69526843 Msa0659230:CDS 50.0%
CACCTTTCGTGAATTCCGAG+AGG + chr4_3:69526829-69526848 None:intergenic 50.0%
!! AGGAGGCATTGTCTGCACTT+GGG + chr4_3:69526935-69526954 None:intergenic 50.0%
!! AAGGAGGCATTGTCTGCACT+TGG + chr4_3:69526936-69526955 None:intergenic 50.0%
!! TGGCTTTGTCGGGGTTCTTT+AGG + chr4_3:69527373-69527392 None:intergenic 50.0%
GGGAGAACCGTTAGTGACAA+TGG - chr4_3:69528331-69528350 Msa0659230:intron 50.0%
AGCCATCGAATTATGGCCGT+TGG + chr4_3:69529524-69529543 None:intergenic 50.0%
GAGAAAGAGACACAGCCAAG+TGG + chr4_3:69529651-69529670 None:intergenic 50.0%
! TGCTGGGTCCTTTGTTTAGC+GGG - chr4_3:69529780-69529799 Msa0659230:intron 50.0%
AGAATGTGGCGATTGGCAAC+TGG + chr4_3:69529885-69529904 None:intergenic 50.0%
TCAAAAGCTTCGGCGTCTAG+CGG + chr4_3:69530839-69530858 None:intergenic 50.0%
GTGAGAACAGGGGACGTTGT+TGG + chr4_3:69526503-69526522 None:intergenic 55.0%
!! GGAGGCATTGTCTGCACTTG+GGG + chr4_3:69526934-69526953 None:intergenic 55.0%
!! GTTTCTGGCACCGGCAACAT+AGG + chr4_3:69526998-69527017 None:intergenic 55.0%
AGGACCCAGCAAGCCCATAA+AGG + chr4_3:69529771-69529790 None:intergenic 55.0%
GCCAATCGCCACATTCTCCT+TGG - chr4_3:69529888-69529907 Msa0659230:intron 55.0%
GCCAAGGAGAATGTGGCGAT+TGG + chr4_3:69529892-69529911 None:intergenic 55.0%
!! AGGAGGCACTGTCTGCACTT+AGG + chr4_3:69530740-69530759 None:intergenic 55.0%
!! GGAAGCACCACCTATGTTGC+CGG - chr4_3:69530787-69530806 Msa0659230:CDS 55.0%
!! GTTTCTGGCACCGGCAACAT+AGG + chr4_3:69526998-69527017 None:intergenic 55.0%
AGCACCGCCTCCTATGTTGC+CGG - chr4_3:69526985-69527004 Msa0659230:CDS 60.0%
!! TCTGGCACCGGCAACATAGG+AGG + chr4_3:69526995-69527014 None:intergenic 60.0%
GTGAGAACAGGGGAGCTGGT+TGG + chr4_3:69530308-69530327 None:intergenic 60.0%
GTGTGTGAGAACAGGGGAGC+TGG + chr4_3:69530312-69530331 None:intergenic 60.0%
!! TCTGGCACCGGCAACATAGG+TGG + chr4_3:69526995-69527014 None:intergenic 60.0%
!! GGCACCGGCAACATAGGAGG+CGG + chr4_3:69526992-69527011 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 69526401 69530883 69526401 ID=Msa0659230;Name=Msa0659230
chr4_3 mRNA 69526401 69530883 69526401 ID=Msa0659230-mRNA-1;Parent=Msa0659230;Name=Msa0659230-mRNA-1;_AED=0.03;_eAED=0.04;_QI=0|0|0|1|0|0|4|0|430
chr4_3 exon 69530637 69530883 69530637 ID=Msa0659230-mRNA-1:exon:20429;Parent=Msa0659230-mRNA-1
chr4_3 exon 69530484 69530612 69530484 ID=Msa0659230-mRNA-1:exon:20428;Parent=Msa0659230-mRNA-1
chr4_3 exon 69530208 69530438 69530208 ID=Msa0659230-mRNA-1:exon:20427;Parent=Msa0659230-mRNA-1
chr4_3 exon 69526401 69527086 69526401 ID=Msa0659230-mRNA-1:exon:20426;Parent=Msa0659230-mRNA-1
chr4_3 CDS 69530637 69530883 69530637 ID=Msa0659230-mRNA-1:cds;Parent=Msa0659230-mRNA-1
chr4_3 CDS 69530484 69530612 69530484 ID=Msa0659230-mRNA-1:cds;Parent=Msa0659230-mRNA-1
chr4_3 CDS 69530208 69530438 69530208 ID=Msa0659230-mRNA-1:cds;Parent=Msa0659230-mRNA-1
chr4_3 CDS 69526401 69527086 69526401 ID=Msa0659230-mRNA-1:cds;Parent=Msa0659230-mRNA-1
Gene Sequence

>Msa0659230

ATGCTTCTACTTCCTTTACTTTTACCTCTTCTCCATGAGCTTCTTGTTGAATCTCACACAAGAAGGTTGCTCTTCCAAAATCCAATTGATCATCAATCACCAACAACGTCCCCTGTTCTCACACAAAACCACAATTCAACTAACTCATATTTTGGAATTCGTGTACTTGATGCAAATGTTGTGATGATACTTGCAGTTCTATTGTGTGCTCTTATTTGCTCTCTTGCATTAAACTTCATCATAAGGCCTCTCAACAACGACTCTTCTTCGAGTTCAAGCAACAACAATCCACCTCAATTGGTCAACAAAGGAATCAAGAAGAAAGCTCTCAAGACATTCCCAACAGTAAGTTATTCAACTGAGTTGAAACTACCAAGTGAAAAGGTGCGCATTTTGCCTAAATGCAATCATGGTTTCCATGTTCGTTGCATCGACAAATGGCTAAAAGCACATTCATCATGCCCCAAGTGCAGACAATGCCTCCTTGAGACTTGTCGAAAGATTGTTGGATCGGAAGCACCGCCTCCTATGTTGCCGGTGCCAGAAACTATTATTAGGATTCAGCCACTAGACCATGAAGCTTTTGAATGTAACTATAGGGAAGAAAAAAACATGTATGCTTCTACTTCCTTTACTTCACCACTCTTCCATGAGCTTCTTGTAGAATCTCACACAAGAAGGTTGCTCTTCCAAAATCCAATTGATTATCAATCACCAACCAGCTCCCCTGTTCTCACACACAACCATAATTCAACCAACTCATATTTTGGAATTCGTGAATTTGATGCGAATGTTGTGATGATACTTGCAGTCCTATTGTGTGCTCTTATTTGCTCACTTGCCTTAAACTCCATCATAAGGTGCGCTTTAAGGTTTTCGAACGTAGCCCTAAACAACGGCTCTTCTTCGAGTTCAAGCAACAACTCTTCACCTCAATTGGCTAACAAAGGAATCAAGAAGAAGGCTCTCAAGACATTCCCAACAGTAAGTTATTCAACTGAGTTGAAACTACCAAATTTGGATACAGAGTGTGTGATATGTCTCTCAGAGTTCACAAAAGGTGAAAAAGTGCGCATTTTACCTAAATGCAATCATGGTTTCCATGTTCGTTGCATCGACAAATGGCTAAAAGCACACTCATCATGTCCTAAGTGCAGACAGTGCCTCCTTGAGACTTGTCGAAAGATTGTTGGATTGGAAGCACCACCTATGTTGCCGGTGCCAGAAACTATTATTAGGATTCAACCGCTAGACGCCGAAGCTTTTGAACGTAACTATAGAGAATTAAGCTGA
Protein sequence

>Msa0659230

MLLLPLLLPLLHELLVESHTRRLLFQNPIDHQSPTTSPVLTQNHNSTNSYFGIRVLDANVVMILAVLLCALICSLALNFIIRPLNNDSSSSSSNNNPPQLVNKGIKKKALKTFPTVSYSTELKLPSEKVRILPKCNHGFHVRCIDKWLKAHSSCPKCRQCLLETCRKIVGSEAPPPMLPVPETIIRIQPLDHEAFECNYREEKNMYASTSFTSPLFHELLVESHTRRLLFQNPIDYQSPTSSPVLTHNHNSTNSYFGIREFDANVVMILAVLLCALICSLALNSIIRCALRFSNVALNNGSSSSSSNNSSPQLANKGIKKKALKTFPTVSYSTELKLPNLDTECVICLSEFTKGEKVRILPKCNHGFHVRCIDKWLKAHSSCPKCRQCLLETCRKIVGLEAPPMLPVPETIIRIQPLDAEAFERNYRELS*