Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1062810 | KEH23114.1 | 91.803 | 122 | 10 | 0 | 43 | 164 | 214 | 335 | 9.46e-63 | 207 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1062810 | A0A072U004 | 91.803 | 122 | 10 | 0 | 43 | 164 | 214 | 335 | 4.52e-63 | 207 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0678930 | Msa1062810 | 0.815249 | 1.018421e-51 | -8.615850e-47 |
| Msa0726140 | Msa1062810 | 0.831325 | 1.779848e-55 | -8.615850e-47 |
| Msa0743810 | Msa1062810 | 0.821340 | 4.252977e-53 | -8.615850e-47 |
| Msa0745060 | Msa1062810 | 0.833540 | 5.029347e-56 | -8.615850e-47 |
| Msa0783160 | Msa1062810 | 0.804318 | 2.288690e-49 | -8.615850e-47 |
| Msa0787600 | Msa1062810 | 0.805643 | 1.208741e-49 | -8.615850e-47 |
| Msa0811080 | Msa1062810 | 0.803241 | 3.828641e-49 | -8.615850e-47 |
| Msa0825860 | Msa1062810 | 0.830201 | 3.355757e-55 | -8.615850e-47 |
| Msa0142220 | Msa1062810 | 0.812399 | 4.323829e-51 | -8.615850e-47 |
| Msa0232850 | Msa1062810 | 0.800750 | 1.244992e-48 | -8.615850e-47 |
| Msa0406120 | Msa1062810 | 0.802892 | 4.522685e-49 | -8.615850e-47 |
| Msa0452900 | Msa1062810 | 0.808608 | 2.849279e-50 | -8.615850e-47 |
| Msa1016280 | Msa1062810 | 0.814678 | 1.363553e-51 | -8.615850e-47 |
| Msa1024240 | Msa1062810 | 0.805421 | 1.346082e-49 | -8.615850e-47 |
| Msa1025360 | Msa1062810 | 0.808457 | 3.068642e-50 | -8.615850e-47 |
| Msa1025370 | Msa1062810 | 0.802430 | 5.632312e-49 | -8.615850e-47 |
| Msa1037200 | Msa1062810 | 0.818084 | 2.357344e-52 | -8.615850e-47 |
| Msa1044840 | Msa1062810 | 0.812231 | 4.704622e-51 | -8.615850e-47 |
| Msa1062810 | Msa1077460 | 0.813089 | 3.053869e-51 | -8.615850e-47 |
| Msa1062810 | Msa1092990 | 0.836439 | 9.353709e-57 | -8.615850e-47 |
| Msa1062810 | Msa1096580 | 0.831646 | 1.483506e-55 | -8.615850e-47 |
| Msa1062810 | Msa1100980 | 0.827320 | 1.670023e-54 | -8.615850e-47 |
| Msa1062810 | Msa1135740 | 0.836972 | 6.841018e-57 | -8.615850e-47 |
| Msa1062810 | Msa1164120 | 0.833832 | 4.252528e-56 | -8.615850e-47 |
| Msa1062810 | Msa1187940 | 0.820946 | 5.241704e-53 | -8.615850e-47 |
| Msa1062810 | Msa1187950 | 0.811644 | 6.316639e-51 | -8.615850e-47 |
| Msa1062810 | Msa1192640 | 0.811238 | 7.734967e-51 | -8.615850e-47 |
| Msa1062810 | Msa1269670 | 0.825870 | 3.702947e-54 | -8.615850e-47 |
| Msa1062810 | Msa1270240 | 0.815844 | 7.506091e-52 | -8.615850e-47 |
| Msa1062810 | Msa1283330 | 0.801713 | 7.906364e-49 | -8.615850e-47 |
| Msa1062810 | Msa1285930 | 0.818965 | 1.487937e-52 | -8.615850e-47 |
| Msa1062810 | Msa1287810 | 0.806241 | 9.052722e-50 | -8.615850e-47 |
| Msa1062810 | Msa1404000 | 0.812120 | 4.973684e-51 | -8.615850e-47 |
| Msa1062810 | Msa1433120 | 0.806757 | 7.045617e-50 | -8.615850e-47 |
| Msa0267010 | Msa1062810 | 0.805358 | 1.387384e-49 | -8.615850e-47 |
| Msa0846330 | Msa1062810 | 0.823027 | 1.727857e-53 | -8.615850e-47 |
| Msa0846350 | Msa1062810 | 0.832932 | 7.126339e-56 | -8.615850e-47 |
| Msa0865320 | Msa1062810 | 0.816508 | 5.335191e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1062810 | MtrunA17_Chr7g0241511 | 91.803 | 122 | 10 | 0 | 43 | 164 | 233 | 354 | 2.96e-66 | 206 |
| Msa1062810 | MtrunA17_Chr2g0292001 | 60.177 | 113 | 45 | 0 | 44 | 156 | 91 | 203 | 5.40e-36 | 124 |
| Msa1062810 | MtrunA17_Chr7g0237451 | 53.906 | 128 | 28 | 1 | 41 | 168 | 375 | 471 | 2.36e-30 | 115 |
| Msa1062810 | MtrunA17_Chr7g0241431 | 45.865 | 133 | 37 | 2 | 39 | 171 | 353 | 450 | 8.40e-25 | 99.4 |
| Msa1062810 | MtrunA17_Chr7g0241421 | 47.500 | 120 | 28 | 2 | 50 | 169 | 398 | 482 | 1.90e-22 | 93.2 |
| Msa1062810 | MtrunA17_Chr7g0241211 | 44.167 | 120 | 31 | 2 | 48 | 167 | 107 | 190 | 1.36e-21 | 86.7 |
| Msa1062810 | MtrunA17_Chr7g0241171 | 42.857 | 119 | 32 | 2 | 49 | 167 | 65 | 147 | 3.09e-20 | 82.0 |
| Msa1062810 | MtrunA17_Chr7g0241161 | 45.378 | 119 | 29 | 2 | 49 | 167 | 345 | 427 | 1.01e-19 | 85.1 |
| Msa1062810 | MtrunA17_Chr7g0241291 | 43.103 | 116 | 30 | 2 | 49 | 164 | 234 | 313 | 3.83e-19 | 82.8 |
| Msa1062810 | MtrunA17_Chr7g0241321 | 41.045 | 134 | 33 | 3 | 44 | 168 | 93 | 189 | 4.46e-18 | 77.8 |
| Msa1062810 | MtrunA17_Chr7g0241261 | 50.602 | 83 | 35 | 2 | 46 | 127 | 353 | 430 | 3.64e-17 | 78.2 |
| Msa1062810 | MtrunA17_Chr7g0241331 | 38.636 | 132 | 47 | 3 | 44 | 172 | 390 | 490 | 1.02e-16 | 76.6 |
| Msa1062810 | MtrunA17_Chr7g0241281 | 50.000 | 68 | 29 | 1 | 47 | 114 | 38 | 100 | 6.76e-16 | 69.7 |
| Msa1062810 | MtrunA17_Chr7g0239731 | 34.783 | 115 | 44 | 1 | 54 | 168 | 389 | 472 | 4.98e-13 | 66.2 |
| Msa1062810 | MtrunA17_Chr1g0166321 | 45.070 | 71 | 34 | 1 | 49 | 119 | 385 | 450 | 2.01e-12 | 64.3 |
| Msa1062810 | MtrunA17_Chr7g0241251 | 43.678 | 87 | 43 | 2 | 49 | 134 | 371 | 452 | 4.68e-12 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 29 sgRNAs with CRISPR-Local
Find 148 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGTTTGTTTACATGTTTC+AGG | 0.115949 | 7_2:-53863997 | Msa1062810:CDS |
| TCATTGGTCATTTCCCTTAA+TGG | 0.165273 | 7_2:+53863899 | None:intergenic |
| ATTCTTAACAACAACCATTA+AGG | 0.189932 | 7_2:-53863913 | Msa1062810:CDS |
| TCAGGGTCTCAGCATTCTTA+TGG | 0.239207 | 7_2:-53863979 | Msa1062810:CDS |
| AGGCTTCACAAAATGTAAAT+TGG | 0.316266 | 7_2:+53864769 | None:intergenic |
| ACATGAGTCTCAAAGGAAAT+TGG | 0.355036 | 7_2:-53864872 | Msa1062810:CDS |
| TTGTTTGTTTACATGTTTCA+GGG | 0.373232 | 7_2:-53863996 | Msa1062810:CDS |
| GTCATCTGTAACCATGTATA+CGG | 0.377945 | 7_2:+53864199 | None:intergenic |
| TTCTTAACAACAACCATTAA+GGG | 0.385405 | 7_2:-53863912 | Msa1062810:CDS |
| TAATGGTTGTTGTTAAGAAT+TGG | 0.422993 | 7_2:+53863916 | None:intergenic |
| CAAAATGTAAATTGGTCACT+AGG | 0.425468 | 7_2:+53864777 | None:intergenic |
| TAGATGTGAAATAGCATTGA+AGG | 0.425604 | 7_2:+53864154 | None:intergenic |
| CAAAGCACTGTAATGATGTA+TGG | 0.432594 | 7_2:+53864016 | None:intergenic |
| AAAATGTAAATTGGTCACTA+GGG | 0.454886 | 7_2:+53864778 | None:intergenic |
| GGAAATTGGCATATGAAACT+TGG | 0.503013 | 7_2:-53864858 | Msa1062810:CDS |
| CAACAATAGAGTACAAGAAA+AGG | 0.508189 | 7_2:-53864829 | Msa1062810:CDS |
| AGTTGTGGAGAATTTGCAAA+AGG | 0.516231 | 7_2:-53864227 | Msa1062810:CDS |
| AAAAGGACCATCCGTATACA+TGG | 0.540418 | 7_2:-53864210 | Msa1062810:CDS |
| CGTTCCTCTATGTGATGTAG+AGG | 0.545687 | 7_2:-53864120 | Msa1062810:CDS |
| ATAGCATTGAAGGATGAGGT+TGG | 0.548790 | 7_2:+53864164 | None:intergenic |
| GCTTCAAAATCATCAAGTTG+TGG | 0.571818 | 7_2:-53864242 | Msa1062810:CDS |
| TGTGTCTACATGAGTCTCAA+AGG | 0.573656 | 7_2:-53864879 | None:intergenic |
| ATACATGGTTACAGATGACT+TGG | 0.582686 | 7_2:-53864195 | Msa1062810:CDS |
| TGAAATAGCATTGAAGGATG+AGG | 0.619021 | 7_2:+53864160 | None:intergenic |
| GGTTAGAATTGGTGTGAACG+AGG | 0.622070 | 7_2:-53864090 | Msa1062810:CDS |
| TCTGTAACCATGTATACGGA+TGG | 0.623610 | 7_2:+53864203 | None:intergenic |
| AAATGTAAATTGGTCACTAG+GGG | 0.626339 | 7_2:+53864779 | None:intergenic |
| ATTTGTAAAAGCAGAAGTTG+AGG | 0.638404 | 7_2:+53863947 | None:intergenic |
| AATGTAAATTGGTCACTAGG+GGG | 0.705146 | 7_2:+53864780 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACTAGATTGAGATAAAATT+GGG | + | chr7_2:53864123-53864142 | None:intergenic | 20.0% |
| !! | AAACTAGATTGAGATAAAAT+TGG | + | chr7_2:53864124-53864143 | None:intergenic | 20.0% |
| !! | TAAGTATGATAATAATAGAC+AGG | + | chr7_2:53864407-53864426 | None:intergenic | 20.0% |
| !! | AACTAGATTGAGATAAAATT+GGG | + | chr7_2:53864123-53864142 | None:intergenic | 20.0% |
| !! | AAACTAGATTGAGATAAAAT+TGG | + | chr7_2:53864124-53864143 | None:intergenic | 20.0% |
| !! | TAAGTATGATAATAATAGAC+AGG | + | chr7_2:53864407-53864426 | None:intergenic | 20.0% |
| !! | TTTTCTTGTACTCTATTGTT+GGG | + | chr7_2:53863941-53863960 | None:intergenic | 25.0% |
| ! | AAAATGTAAATTGGTCACTA+GGG | + | chr7_2:53863994-53864013 | None:intergenic | 25.0% |
| ! | ACTAGATTGAGATAAAATTG+GGG | + | chr7_2:53864122-53864141 | None:intergenic | 25.0% |
| ! | CTGAAATCATCAAAAAAATG+TGG | + | chr7_2:53864157-53864176 | None:intergenic | 25.0% |
| ! | ATCATACTTACTATAATTCC+CGG | - | chr7_2:53864417-53864436 | Msa1062810:intron | 25.0% |
| ! | CGTATTACATATTATTGTTG+TGG | - | chr7_2:53864455-53864474 | Msa1062810:intron | 25.0% |
| ! | TTTGTTTGTTTACATGTTTC+AGG | - | chr7_2:53864772-53864791 | Msa1062810:CDS | 25.0% |
| ! | TTGTTTGTTTACATGTTTCA+GGG | - | chr7_2:53864773-53864792 | Msa1062810:CDS | 25.0% |
| !! | TAATGGTTGTTGTTAAGAAT+TGG | + | chr7_2:53864856-53864875 | None:intergenic | 25.0% |
| ! | ATTCTTAACAACAACCATTA+AGG | - | chr7_2:53864856-53864875 | Msa1062810:CDS | 25.0% |
| ! | TTCTTAACAACAACCATTAA+GGG | - | chr7_2:53864857-53864876 | Msa1062810:CDS | 25.0% |
| !! | TTTTCTTGTACTCTATTGTT+GGG | + | chr7_2:53863941-53863960 | None:intergenic | 25.0% |
| ! | AAAATGTAAATTGGTCACTA+GGG | + | chr7_2:53863994-53864013 | None:intergenic | 25.0% |
| ! | ACTAGATTGAGATAAAATTG+GGG | + | chr7_2:53864122-53864141 | None:intergenic | 25.0% |
| ! | CTGAAATCATCAAAAAAATG+TGG | + | chr7_2:53864157-53864176 | None:intergenic | 25.0% |
| ! | ATCATACTTACTATAATTCC+CGG | - | chr7_2:53864417-53864436 | Msa1062810:intron | 25.0% |
| ! | CGTATTACATATTATTGTTG+TGG | - | chr7_2:53864455-53864474 | Msa1062810:intron | 25.0% |
| ! | TTTGTTTGTTTACATGTTTC+AGG | - | chr7_2:53864772-53864791 | Msa1062810:CDS | 25.0% |
| ! | TTGTTTGTTTACATGTTTCA+GGG | - | chr7_2:53864773-53864792 | Msa1062810:CDS | 25.0% |
| !! | TAATGGTTGTTGTTAAGAAT+TGG | + | chr7_2:53864856-53864875 | None:intergenic | 25.0% |
| ! | ATTCTTAACAACAACCATTA+AGG | - | chr7_2:53864856-53864875 | Msa1062810:CDS | 25.0% |
| ! | TTCTTAACAACAACCATTAA+GGG | - | chr7_2:53864857-53864876 | Msa1062810:CDS | 25.0% |
| ! | CTTTTCTTGTACTCTATTGT+TGG | + | chr7_2:53863942-53863961 | None:intergenic | 30.0% |
| CAACAATAGAGTACAAGAAA+AGG | - | chr7_2:53863940-53863959 | Msa1062810:CDS | 30.0% | |
| AAATGTAAATTGGTCACTAG+GGG | + | chr7_2:53863993-53864012 | None:intergenic | 30.0% | |
| CAAAATGTAAATTGGTCACT+AGG | + | chr7_2:53863995-53864014 | None:intergenic | 30.0% | |
| AGGCTTCACAAAATGTAAAT+TGG | + | chr7_2:53864003-53864022 | None:intergenic | 30.0% | |
| !! | TAGTTTACTTTTAACCTTGC+AGG | - | chr7_2:53864265-53864284 | Msa1062810:CDS | 30.0% |
| TATCTGGAGATAATAATAGC+AGG | + | chr7_2:53864379-53864398 | None:intergenic | 30.0% | |
| ATGATAATAATAGACAGGCA+AGG | + | chr7_2:53864402-53864421 | None:intergenic | 30.0% | |
| !!! | GATTTTGAAGCAGAATACTT+AGG | + | chr7_2:53864518-53864537 | None:intergenic | 30.0% |
| ! | TAGATGTGAAATAGCATTGA+AGG | + | chr7_2:53864618-53864637 | None:intergenic | 30.0% |
| ATTTGTAAAAGCAGAAGTTG+AGG | + | chr7_2:53864825-53864844 | None:intergenic | 30.0% | |
| !! | TCAACTTCTGCTTTTACAAA+TGG | - | chr7_2:53864824-53864843 | Msa1062810:CDS | 30.0% |
| ! | CTTTTCTTGTACTCTATTGT+TGG | + | chr7_2:53863942-53863961 | None:intergenic | 30.0% |
| CAACAATAGAGTACAAGAAA+AGG | - | chr7_2:53863940-53863959 | Msa1062810:CDS | 30.0% | |
| AAATGTAAATTGGTCACTAG+GGG | + | chr7_2:53863993-53864012 | None:intergenic | 30.0% | |
| CAAAATGTAAATTGGTCACT+AGG | + | chr7_2:53863995-53864014 | None:intergenic | 30.0% | |
| AGGCTTCACAAAATGTAAAT+TGG | + | chr7_2:53864003-53864022 | None:intergenic | 30.0% | |
| !! | TAGTTTACTTTTAACCTTGC+AGG | - | chr7_2:53864265-53864284 | Msa1062810:CDS | 30.0% |
| TATCTGGAGATAATAATAGC+AGG | + | chr7_2:53864379-53864398 | None:intergenic | 30.0% | |
| ATGATAATAATAGACAGGCA+AGG | + | chr7_2:53864402-53864421 | None:intergenic | 30.0% | |
| !!! | GATTTTGAAGCAGAATACTT+AGG | + | chr7_2:53864518-53864537 | None:intergenic | 30.0% |
| ! | TAGATGTGAAATAGCATTGA+AGG | + | chr7_2:53864618-53864637 | None:intergenic | 30.0% |
| ATTTGTAAAAGCAGAAGTTG+AGG | + | chr7_2:53864825-53864844 | None:intergenic | 30.0% | |
| !! | TCAACTTCTGCTTTTACAAA+TGG | - | chr7_2:53864824-53864843 | Msa1062810:CDS | 30.0% |
| GGAAATTGGCATATGAAACT+TGG | - | chr7_2:53863911-53863930 | Msa1062810:CDS | 35.0% | |
| AATGTAAATTGGTCACTAGG+GGG | + | chr7_2:53863992-53864011 | None:intergenic | 35.0% | |
| ! | CCTTTAGGTTTGATTCTTAC+CGG | - | chr7_2:53864082-53864101 | Msa1062810:CDS | 35.0% |
| TTTGATTCTTACCGGTGTAT+GGG | - | chr7_2:53864090-53864109 | Msa1062810:CDS | 35.0% | |
| ATTGAGATAAAATTGGGGCA+GGG | + | chr7_2:53864117-53864136 | None:intergenic | 35.0% | |
| ATGATTTCAGCATATTCGCT+TGG | - | chr7_2:53864167-53864186 | Msa1062810:CDS | 35.0% | |
| AATGAGTCTGTCGAAATTAC+AGG | + | chr7_2:53864229-53864248 | None:intergenic | 35.0% | |
| TTCGACAGACTCATTTAACA+TGG | - | chr7_2:53864234-53864253 | Msa1062810:CDS | 35.0% | |
| ! | GGCTTTCTCATTTCATTTTG+AGG | - | chr7_2:53864295-53864314 | Msa1062810:intron | 35.0% |
| ATACTTACTATAATTCCCGG+TGG | - | chr7_2:53864420-53864439 | Msa1062810:intron | 35.0% | |
| !! | ATTGTTGTGGTTCTGATGAT+AGG | - | chr7_2:53864468-53864487 | Msa1062810:intron | 35.0% |
| ! | GCTTCAAAATCATCAAGTTG+TGG | - | chr7_2:53864527-53864546 | Msa1062810:intron | 35.0% |
| AGTTGTGGAGAATTTGCAAA+AGG | - | chr7_2:53864542-53864561 | Msa1062810:intron | 35.0% | |
| GTCATCTGTAACCATGTATA+CGG | + | chr7_2:53864573-53864592 | None:intergenic | 35.0% | |
| ATACATGGTTACAGATGACT+TGG | - | chr7_2:53864574-53864593 | Msa1062810:intron | 35.0% | |
| ! | TGAAATAGCATTGAAGGATG+AGG | + | chr7_2:53864612-53864631 | None:intergenic | 35.0% |
| ! | TTTTCCTCTACATCACATAG+AGG | + | chr7_2:53864656-53864675 | None:intergenic | 35.0% |
| ATGTGATGTAGAGGAAAAAG+TGG | - | chr7_2:53864658-53864677 | Msa1062810:intron | 35.0% | |
| GAGGAAAAAGTGGTTAGAAT+TGG | - | chr7_2:53864668-53864687 | Msa1062810:intron | 35.0% | |
| !! | CAAAGCACTGTAATGATGTA+TGG | + | chr7_2:53864756-53864775 | None:intergenic | 35.0% |
| TCATTGGTCATTTCCCTTAA+TGG | + | chr7_2:53864873-53864892 | None:intergenic | 35.0% | |
| GGAAATTGGCATATGAAACT+TGG | - | chr7_2:53863911-53863930 | Msa1062810:CDS | 35.0% | |
| AATGTAAATTGGTCACTAGG+GGG | + | chr7_2:53863992-53864011 | None:intergenic | 35.0% | |
| ! | CCTTTAGGTTTGATTCTTAC+CGG | - | chr7_2:53864082-53864101 | Msa1062810:CDS | 35.0% |
| TTTGATTCTTACCGGTGTAT+GGG | - | chr7_2:53864090-53864109 | Msa1062810:CDS | 35.0% | |
| ATTGAGATAAAATTGGGGCA+GGG | + | chr7_2:53864117-53864136 | None:intergenic | 35.0% | |
| ATGATTTCAGCATATTCGCT+TGG | - | chr7_2:53864167-53864186 | Msa1062810:CDS | 35.0% | |
| AATGAGTCTGTCGAAATTAC+AGG | + | chr7_2:53864229-53864248 | None:intergenic | 35.0% | |
| TTCGACAGACTCATTTAACA+TGG | - | chr7_2:53864234-53864253 | Msa1062810:CDS | 35.0% | |
| ! | GGCTTTCTCATTTCATTTTG+AGG | - | chr7_2:53864295-53864314 | Msa1062810:intron | 35.0% |
| ATACTTACTATAATTCCCGG+TGG | - | chr7_2:53864420-53864439 | Msa1062810:intron | 35.0% | |
| !! | ATTGTTGTGGTTCTGATGAT+AGG | - | chr7_2:53864468-53864487 | Msa1062810:intron | 35.0% |
| ! | GCTTCAAAATCATCAAGTTG+TGG | - | chr7_2:53864527-53864546 | Msa1062810:intron | 35.0% |
| AGTTGTGGAGAATTTGCAAA+AGG | - | chr7_2:53864542-53864561 | Msa1062810:intron | 35.0% | |
| GTCATCTGTAACCATGTATA+CGG | + | chr7_2:53864573-53864592 | None:intergenic | 35.0% | |
| ATACATGGTTACAGATGACT+TGG | - | chr7_2:53864574-53864593 | Msa1062810:intron | 35.0% | |
| ! | TGAAATAGCATTGAAGGATG+AGG | + | chr7_2:53864612-53864631 | None:intergenic | 35.0% |
| ! | TTTTCCTCTACATCACATAG+AGG | + | chr7_2:53864656-53864675 | None:intergenic | 35.0% |
| ATGTGATGTAGAGGAAAAAG+TGG | - | chr7_2:53864658-53864677 | Msa1062810:intron | 35.0% | |
| GAGGAAAAAGTGGTTAGAAT+TGG | - | chr7_2:53864668-53864687 | Msa1062810:intron | 35.0% | |
| !! | CAAAGCACTGTAATGATGTA+TGG | + | chr7_2:53864756-53864775 | None:intergenic | 35.0% |
| TCATTGGTCATTTCCCTTAA+TGG | + | chr7_2:53864873-53864892 | None:intergenic | 35.0% | |
| AAACCTAAAGGTTCCTTAGC+AGG | + | chr7_2:53864073-53864092 | None:intergenic | 40.0% | |
| CCGGTAAGAATCAAACCTAA+AGG | + | chr7_2:53864085-53864104 | None:intergenic | 40.0% | |
| GTTTGATTCTTACCGGTGTA+TGG | - | chr7_2:53864089-53864108 | Msa1062810:CDS | 40.0% | |
| TTGATTCTTACCGGTGTATG+GGG | - | chr7_2:53864091-53864110 | Msa1062810:CDS | 40.0% | |
| GATTGAGATAAAATTGGGGC+AGG | + | chr7_2:53864118-53864137 | None:intergenic | 40.0% | |
| CGAAATTACAGGCTAACAAG+TGG | + | chr7_2:53864218-53864237 | None:intergenic | 40.0% | |
| TTTAACCTTGCAGGAATCGA+AGG | - | chr7_2:53864274-53864293 | Msa1062810:CDS | 40.0% | |
| ! | TAATAGACAGGCAAGGTATC+TGG | + | chr7_2:53864395-53864414 | None:intergenic | 40.0% |
| AAAAGGACCATCCGTATACA+TGG | - | chr7_2:53864559-53864578 | Msa1062810:intron | 40.0% | |
| TCTGTAACCATGTATACGGA+TGG | + | chr7_2:53864569-53864588 | None:intergenic | 40.0% | |
| ! | ATAGCATTGAAGGATGAGGT+TGG | + | chr7_2:53864608-53864627 | None:intergenic | 40.0% |
| AAACCTAAAGGTTCCTTAGC+AGG | + | chr7_2:53864073-53864092 | None:intergenic | 40.0% | |
| CCGGTAAGAATCAAACCTAA+AGG | + | chr7_2:53864085-53864104 | None:intergenic | 40.0% | |
| GTTTGATTCTTACCGGTGTA+TGG | - | chr7_2:53864089-53864108 | Msa1062810:CDS | 40.0% | |
| TTGATTCTTACCGGTGTATG+GGG | - | chr7_2:53864091-53864110 | Msa1062810:CDS | 40.0% | |
| GATTGAGATAAAATTGGGGC+AGG | + | chr7_2:53864118-53864137 | None:intergenic | 40.0% | |
| CGAAATTACAGGCTAACAAG+TGG | + | chr7_2:53864218-53864237 | None:intergenic | 40.0% | |
| TTTAACCTTGCAGGAATCGA+AGG | - | chr7_2:53864274-53864293 | Msa1062810:CDS | 40.0% | |
| ! | TAATAGACAGGCAAGGTATC+TGG | + | chr7_2:53864395-53864414 | None:intergenic | 40.0% |
| AAAAGGACCATCCGTATACA+TGG | - | chr7_2:53864559-53864578 | Msa1062810:intron | 40.0% | |
| TCTGTAACCATGTATACGGA+TGG | + | chr7_2:53864569-53864588 | None:intergenic | 40.0% | |
| ! | ATAGCATTGAAGGATGAGGT+TGG | + | chr7_2:53864608-53864627 | None:intergenic | 40.0% |
| ! | TTTTGTGAAGCCTGCCAGTT+TGG | - | chr7_2:53864010-53864029 | Msa1062810:CDS | 45.0% |
| GCATGTGAAGTTTGCCAAAC+TGG | + | chr7_2:53864027-53864046 | None:intergenic | 45.0% | |
| GGAGAGGAAGAGGAATTGAA+GGG | + | chr7_2:53864052-53864071 | None:intergenic | 45.0% | |
| AGGAGAGGAAGAGGAATTGA+AGG | + | chr7_2:53864053-53864072 | None:intergenic | 45.0% | |
| TAAAGGTTCCTTAGCAGGAG+AGG | + | chr7_2:53864068-53864087 | None:intergenic | 45.0% | |
| TCTCCTGCTAAGGAACCTTT+AGG | - | chr7_2:53864067-53864086 | Msa1062810:CDS | 45.0% | |
| CGTTCCTCTATGTGATGTAG+AGG | - | chr7_2:53864649-53864668 | Msa1062810:intron | 45.0% | |
| GGTTAGAATTGGTGTGAACG+AGG | - | chr7_2:53864679-53864698 | Msa1062810:intron | 45.0% | |
| TCAGGGTCTCAGCATTCTTA+TGG | - | chr7_2:53864790-53864809 | Msa1062810:CDS | 45.0% | |
| ! | TTTTGTGAAGCCTGCCAGTT+TGG | - | chr7_2:53864010-53864029 | Msa1062810:CDS | 45.0% |
| GCATGTGAAGTTTGCCAAAC+TGG | + | chr7_2:53864027-53864046 | None:intergenic | 45.0% | |
| GGAGAGGAAGAGGAATTGAA+GGG | + | chr7_2:53864052-53864071 | None:intergenic | 45.0% | |
| AGGAGAGGAAGAGGAATTGA+AGG | + | chr7_2:53864053-53864072 | None:intergenic | 45.0% | |
| TAAAGGTTCCTTAGCAGGAG+AGG | + | chr7_2:53864068-53864087 | None:intergenic | 45.0% | |
| TCTCCTGCTAAGGAACCTTT+AGG | - | chr7_2:53864067-53864086 | Msa1062810:CDS | 45.0% | |
| CGTTCCTCTATGTGATGTAG+AGG | - | chr7_2:53864649-53864668 | Msa1062810:intron | 45.0% | |
| GGTTAGAATTGGTGTGAACG+AGG | - | chr7_2:53864679-53864698 | Msa1062810:intron | 45.0% | |
| TCAGGGTCTCAGCATTCTTA+TGG | - | chr7_2:53864790-53864809 | Msa1062810:CDS | 45.0% | |
| GTGAAGTTTGCCAAACTGGC+AGG | + | chr7_2:53864023-53864042 | None:intergenic | 50.0% | |
| TTCCTCTTCCTCTCCTGCTA+AGG | - | chr7_2:53864057-53864076 | Msa1062810:CDS | 50.0% | |
| TTCCTTAGCAGGAGAGGAAG+AGG | + | chr7_2:53864062-53864081 | None:intergenic | 50.0% | |
| GAAAGCCTTCGATTCCTGCA+AGG | + | chr7_2:53864282-53864301 | None:intergenic | 50.0% | |
| TACGAAGAGAGCGAATCCAC+CGG | + | chr7_2:53864439-53864458 | None:intergenic | 50.0% | |
| GTGAAGTTTGCCAAACTGGC+AGG | + | chr7_2:53864023-53864042 | None:intergenic | 50.0% | |
| TTCCTCTTCCTCTCCTGCTA+AGG | - | chr7_2:53864057-53864076 | Msa1062810:CDS | 50.0% | |
| TTCCTTAGCAGGAGAGGAAG+AGG | + | chr7_2:53864062-53864081 | None:intergenic | 50.0% | |
| GAAAGCCTTCGATTCCTGCA+AGG | + | chr7_2:53864282-53864301 | None:intergenic | 50.0% | |
| TACGAAGAGAGCGAATCCAC+CGG | + | chr7_2:53864439-53864458 | None:intergenic | 50.0% | |
| ACGAAGAGAGCGAATCCACC+GGG | + | chr7_2:53864438-53864457 | None:intergenic | 55.0% | |
| ACGAAGAGAGCGAATCCACC+GGG | + | chr7_2:53864438-53864457 | None:intergenic | 55.0% | |
| TGGGGCAGGGCCCCATACAC+CGG | + | chr7_2:53864104-53864123 | None:intergenic | 70.0% | |
| TGGGGCAGGGCCCCATACAC+CGG | + | chr7_2:53864104-53864123 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 53863899 | 53864892 | 53863899 | ID=Msa1062810;Name=Msa1062810 |
| chr7_2 | mRNA | 53863899 | 53864892 | 53863899 | ID=Msa1062810-mRNA-1;Parent=Msa1062810;Name=Msa1062810-mRNA-1;_AED=0.59;_eAED=0.59;_QI=0|0|0|0.5|0|0|2|0|176 |
| chr7_2 | exon | 53864765 | 53864892 | 53864765 | ID=Msa1062810-mRNA-1:exon:9871;Parent=Msa1062810-mRNA-1 |
| chr7_2 | exon | 53863899 | 53864301 | 53863899 | ID=Msa1062810-mRNA-1:exon:9870;Parent=Msa1062810-mRNA-1 |
| chr7_2 | CDS | 53864765 | 53864892 | 53864765 | ID=Msa1062810-mRNA-1:cds;Parent=Msa1062810-mRNA-1 |
| chr7_2 | CDS | 53863899 | 53864301 | 53863899 | ID=Msa1062810-mRNA-1:cds;Parent=Msa1062810-mRNA-1 |
| Gene Sequence |
| Protein sequence |
