AlfalfaGEDB | Msa1075520

M. sativa cultivar zhongmu-4 / Msa1075520

KEGG: K11251|K11253
GO: GO:0000228 GO:0000785 GO:0000790 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006325 GO:0006342 GO:0006355 GO:0006996 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0040029 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0071840 GO:0080090 GO:0097159 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141
PFAM: PF00125.27

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1075520	XP_003625323.1	98.592	142	2	0	1	142	1	142	1.35e-95	282

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1075520	sp\|Q9S9K7\|H2AXB_ARATH	85.211	142	21	0	1	142	1	142	3.49e-84	246

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1075520	G7KWD1	98.592	142	2	0	1	142	1	142	6.45e-96	282

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0005890	Msa1075520	0.821833	3.271574e-53	-8.615850e-47
Msa0115550	Msa1075520	0.810162	1.321738e-50	-8.615850e-47
Msa0658640	Msa1075520	0.807126	5.884578e-50	-8.615850e-47
Msa0795870	Msa1075520	0.837226	5.890677e-57	-8.615850e-47
Msa0824450	Msa1075520	0.825905	3.631941e-54	-8.615850e-47
Msa0833650	Msa1075520	0.826326	2.885143e-54	-8.615850e-47
Msa0838750	Msa1075520	0.805123	1.554257e-49	-8.615850e-47
Msa0140280	Msa1075520	0.828867	7.082405e-55	-8.615850e-47
Msa0213610	Msa1075520	0.811272	7.606106e-51	-8.615850e-47
Msa0380670	Msa1075520	0.821523	3.858942e-53	-8.615850e-47
Msa0430300	Msa1075520	0.819818	9.509686e-53	-8.615850e-47
Msa1075520	Msa1103990	0.809993	1.437551e-50	-8.615850e-47
Msa1075520	Msa1116660	0.812619	3.870494e-51	-8.615850e-47
Msa1075520	Msa1132840	0.830799	2.396307e-55	-8.615850e-47
Msa1075520	Msa1208950	0.806927	6.486006e-50	-8.615850e-47
Msa1075520	Msa1226520	0.805696	1.178176e-49	-8.615850e-47
Msa1075520	Msa1359690	0.801033	1.089704e-48	-8.615850e-47
Msa1075520	Msa1396030	0.804867	1.757643e-49	-8.615850e-47
Msa1075520	Msa1405460	0.803238	3.834839e-49	-8.615850e-47
Msa0293040	Msa1075520	0.826762	2.270450e-54	-8.615850e-47
Msa0298470	Msa1075520	0.803201	3.903131e-49	-8.615850e-47
Msa0484570	Msa1075520	0.828208	1.021644e-54	-8.615850e-47
Msa0529030	Msa1075520	0.805811	1.114814e-49	-8.615850e-47
Msa0530780	Msa1075520	0.811395	7.153446e-51	-8.615850e-47
Msa0580200	Msa1075520	0.806132	9.543893e-50	-8.615850e-47
Msa0580370	Msa1075520	0.831072	2.052964e-55	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1075520	MtrunA17_Chr7g0259151	98.592	142	2	0	1	142	1	142	1.24e-99	282
Msa1075520	MtrunA17_Chr7g0268831	85.211	142	21	0	1	142	1	142	2.02e-85	246
Msa1075520	MtrunA17_Chr7g0273351	88.060	134	16	0	9	142	6	139	6.98e-83	239
Msa1075520	MtrunA17_Chr7g0273331	88.060	134	16	0	9	142	62	195	1.43e-81	238
Msa1075520	MtrunA17_Chr7g0273341	77.778	135	19	2	8	142	44	167	6.33e-67	200
Msa1075520	MtrunA17_Chr2g0319191	80.328	122	20	1	13	130	3	124	1.11e-66	198
Msa1075520	MtrunA17_Chr2g0319181	81.818	121	14	2	13	127	3	121	7.63e-66	196
Msa1075520	MtrunA17_Chr7g0272611	75.424	118	29	0	12	129	16	133	3.43e-59	179
Msa1075520	MtrunA17_Chr2g0327951	78.505	107	23	0	21	127	58	164	3.69e-57	176
Msa1075520	MtrunA17_Chr4g0035621	79.245	106	22	0	22	127	24	129	4.95e-57	174
Msa1075520	MtrunA17_Chr4g0031041	78.505	107	23	0	21	127	17	123	6.21e-57	174
Msa1075520	MtrunA17_Chr4g0031651	78.302	106	23	0	22	127	24	129	1.91e-56	173
Msa1075520	MtrunA17_Chr4g0031001	78.302	106	23	0	22	127	24	129	1.95e-56	173
Msa1075520	MtrunA17_Chr2g0327931	78.302	106	23	0	22	127	23	128	2.24e-56	173
Msa1075520	MtrunA17_Chr8g0379311	78.302	106	23	0	22	127	24	129	2.65e-56	172
Msa1075520	MtrunA17_Chr4g0032301	78.302	106	23	0	22	127	24	129	3.20e-56	172
Msa1075520	MtrunA17_Chr6g0449661	64.486	107	29	2	22	127	85	183	9.65e-40	132
Msa1075520	MtrunA17_Chr1g0148961	62.617	107	38	2	21	126	25	130	2.58e-39	129
Msa1075520	MtrunA17_Chr1g0148951	62.617	107	38	2	21	126	25	130	2.58e-39	129
Msa1075520	MtrunA17_Chr3g0119971	64.151	106	29	2	23	127	81	178	3.30e-39	130
Msa1075520	MtrunA17_Chr1g0211651	54.688	128	55	3	1	126	1	127	1.16e-37	125
Msa1075520	MtrunA17_Chr1g0184901	55.469	128	44	4	11	126	4	130	1.07e-36	122
Msa1075520	MtrunA17_Chr4g0031031	75.676	74	18	0	43	116	10	83	3.71e-34	115
Msa1075520	MtrunA17_Chr4g0024701	49.533	107	34	2	22	128	26	112	1.78e-25	93.6
Msa1075520	MtrunA17_Chr4g0000531	81.250	48	9	0	83	130	5	52	1.76e-22	84.3
Msa1075520	MtrunA17_Chr1g0183701	57.143	63	27	0	65	127	30	92	8.97e-18	73.6

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1075520	AT1G54690.1	85.211	142	21	0	1	142	1	142	3.55e-85	246
Msa1075520	AT1G08880.1	83.803	142	23	0	1	142	1	142	3.22e-84	243
Msa1075520	AT4G27230.2	79.839	124	21	1	13	132	3	126	1.97e-66	198
Msa1075520	AT4G27230.1	79.839	124	21	1	13	132	3	126	1.97e-66	198
Msa1075520	AT5G54640.1	79.032	124	22	1	13	132	3	126	9.24e-66	196
Msa1075520	AT3G20670.1	79.032	124	22	1	13	132	3	126	3.55e-65	194
Msa1075520	AT1G51060.1	77.419	124	24	1	13	132	3	126	5.51e-65	194
Msa1075520	AT5G59870.1	71.324	136	33	3	4	134	2	136	8.85e-61	184
Msa1075520	AT5G27670.1	73.600	125	29	1	7	127	6	130	8.62e-57	174
Msa1075520	AT5G02560.1	78.505	107	23	0	21	127	23	129	4.15e-56	172
Msa1075520	AT5G02560.2	64.122	131	23	1	21	127	23	153	4.31e-50	158
Msa1075520	AT2G38810.1	61.682	107	39	2	21	126	27	132	2.67e-38	127
Msa1075520	AT2G38810.4	61.682	107	39	2	21	126	27	132	2.67e-38	127
Msa1075520	AT2G38810.3	61.682	107	39	2	21	126	27	132	2.67e-38	127
Msa1075520	AT2G38810.2	61.682	107	39	2	21	126	27	132	2.67e-38	127
Msa1075520	AT1G52740.1	60.952	105	39	2	23	126	27	130	7.41e-38	125
Msa1075520	AT3G54560.1	60.000	105	40	2	23	126	29	132	7.28e-37	123
Msa1075520	AT3G54560.2	60.000	105	40	2	23	126	29	132	7.28e-37	123
Msa1075520	AT4G13570.1	50.000	92	44	2	30	120	28	118	2.60e-22	85.9
Msa1075520	AT4G13570.2	49.451	91	44	2	31	120	35	124	1.00e-21	84.3

Find 65 sgRNAs with CRISPR-Local

Find 182 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GGAAACGGACTTGGTGGTTT+TGG	0.182132	7_2:+73839369	None:intergenic
TTCTTTCCAGCCACCTTCTT+TGG	0.190245	7_2:+73838958	None:intergenic
TTTGCCCCTTCCACCTTTCT+TGG	0.205738	7_2:+73839393	None:intergenic
GCTGGAAAGAAGGGAGAAAT+TGG	0.339055	7_2:-73838946	Msa1075520:CDS
CCTTCTTTGGCAACAAAGTC+TGG	0.341613	7_2:+73838971	None:intergenic
TGTTGGATCGTTAAAATGTT+AGG	0.342558	7_2:-73838881	Msa1075520:three_prime_UTR
TAGGGGTTTAATGTAGCATT+TGG	0.358115	7_2:-73838904	Msa1075520:three_prime_UTR
CGATGCGGCCAACGGGGAAC+TGG	0.364040	7_2:+73839326	None:intergenic
ACATCAAAGTACACTCTCTT+TGG	0.365869	7_2:+73839751	None:intergenic
AGAACGGCGGAGAGGTAAAC+AGG	0.367840	7_2:+73839253	None:intergenic
TATTCTCATCGTGTTGGATC+TGG	0.375284	7_2:-73839280	Msa1075520:CDS
GTTTCGTTCTTGATTCTGAT+TGG	0.382483	7_2:+73839532	None:intergenic
AACAAAGTCTGGTGAATGTT+AGG	0.388717	7_2:+73838982	None:intergenic
GCTTGATCTGGAAACGGACT+TGG	0.398049	7_2:+73839360	None:intergenic
TGAAGAATTGAGCAAATTGT+TGG	0.398697	7_2:-73839037	Msa1075520:CDS
GTTGGCTTTGGTTTATATAG+AGG	0.398990	7_2:+73839510	None:intergenic
AAGCGAGCGATGCGGCCAAC+GGG	0.403212	7_2:+73839319	None:intergenic
GAGAATAACGACCTGCTTTG+AGG	0.405490	7_2:+73839296	None:intergenic
CCAGACTTTGTTGCCAAAGA+AGG	0.415982	7_2:-73838971	Msa1075520:CDS
GGCTTTGCTTGATCTGGAAA+CGG	0.440381	7_2:+73839354	None:intergenic
GAGACCGGCTTTGCTTGATC+TGG	0.448607	7_2:+73839348	None:intergenic
AAGTTTAATTGAGTTGGCTT+TGG	0.455144	7_2:+73839498	None:intergenic
CGTTCCTCACAGCTAGTTGA+AGG	0.456555	7_2:+73839061	None:intergenic
TTTAATGTAGCATTTGGTGT+TGG	0.463658	7_2:-73838898	Msa1075520:three_prime_UTR
AAAGAAGGTGGCTGGAAAGA+AGG	0.474142	7_2:-73838956	Msa1075520:CDS
GATTAGGTTAGGATTAATGT+TGG	0.482420	7_2:-73838804	Msa1075520:three_prime_UTR
TTGTTGCCAAAGAAGGTGGC+TGG	0.488184	7_2:-73838964	Msa1075520:CDS
AGAAATTGGATCTGTTAGTC+AGG	0.492158	7_2:-73838932	Msa1075520:CDS
ATCGCTCGCTTCCTCAAAGC+AGG	0.500822	7_2:-73839307	Msa1075520:CDS
GAAGAATTGAGCAAATTGTT+GGG	0.504162	7_2:-73839036	Msa1075520:CDS
GTTGTGAAGTTTAATTGAGT+TGG	0.512047	7_2:+73839492	None:intergenic
TGATTCTGATTGGCTTAGAG+AGG	0.517754	7_2:+73839542	None:intergenic
TGATCTGGAAACGGACTTGG+TGG	0.521894	7_2:+73839363	None:intergenic
CACGCCAGCGAAACTTGAAA+AGG	0.523341	7_2:-73839640	Msa1075520:five_prime_UTR
GCCAACGGGGAACTGGAGAC+CGG	0.528668	7_2:+73839333	None:intergenic
CAACAACCAAGAAAGGTGGA+AGG	0.537155	7_2:-73839399	Msa1075520:CDS
GAAGCGAGCGATGCGGCCAA+CGG	0.540733	7_2:+73839318	None:intergenic
GGTCGTTATTCTCATCGTGT+TGG	0.542975	7_2:-73839286	Msa1075520:CDS
ACAGCTAGTTGAAGGTGCCT+TGG	0.544219	7_2:+73839069	None:intergenic
AACAACCAAGAAAGGTGGAA+GGG	0.559634	7_2:-73839398	Msa1075520:CDS
GCAACAGCAACAACCAAGAA+AGG	0.559755	7_2:-73839406	Msa1075520:CDS
GGACATGTGACTATTGCTAA+TGG	0.560318	7_2:-73839015	Msa1075520:CDS
ACAACCAAGAAAGGTGGAAG+GGG	0.560784	7_2:-73839397	Msa1075520:CDS
GACTTTGTTGCCAAAGAAGG+TGG	0.566455	7_2:-73838968	Msa1075520:CDS
AAGAAGGTGGCTGGAAAGAA+GGG	0.567889	7_2:-73838955	Msa1075520:CDS
GCCGGTCTCCAGTTCCCCGT+TGG	0.568530	7_2:-73839334	Msa1075520:CDS
GTTTCCAGATCAAGCAAAGC+CGG	0.580006	7_2:-73839352	Msa1075520:CDS
CAAGGGATAACAAGAAGACA+AGG	0.618509	7_2:-73839098	Msa1075520:CDS
GGCACAGAGGTATTCAAGAA+CGG	0.619031	7_2:+73839237	None:intergenic
AATTGGCTGGTAATGCTGCA+AGG	0.630027	7_2:-73839116	Msa1075520:CDS
AGCGAGCGATGCGGCCAACG+GGG	0.630212	7_2:+73839320	None:intergenic
TGTTTATACTAGCAATAGAG+AGG	0.630482	7_2:-73839731	Msa1075520:five_prime_UTR
ATTGGCTGGTAATGCTGCAA+GGG	0.637236	7_2:-73839115	Msa1075520:CDS
ACAGCAACAACCAAGAAAGG+TGG	0.649404	7_2:-73839403	Msa1075520:CDS
TCTTGAATACCTCTGTGCCG+AGG	0.656447	7_2:-73839233	Msa1075520:intron
CTTTGAGGAAGCGAGCGATG+CGG	0.656929	7_2:+73839311	None:intergenic
CATGTGACTATTGCTAATGG+TGG	0.673088	7_2:-73839012	Msa1075520:CDS
GAACGGCGGAGAGGTAAACA+GGG	0.687773	7_2:+73839254	None:intergenic
GGTATTCAAGAACGGCGGAG+AGG	0.689904	7_2:+73839245	None:intergenic
GGCACCTTCAACTAGCTGTG+AGG	0.707498	7_2:-73839065	Msa1075520:CDS
AGAAGACAAGGATTGTACCA+AGG	0.714311	7_2:-73839086	Msa1075520:CDS
TGGCTTAGAGAGGTTTCACG+CGG	0.717037	7_2:+73839552	None:intergenic
TTTCACGCGGATCGCCAACG+TGG	0.727732	7_2:+73839565	None:intergenic
ACAGAGGTATTCAAGAACGG+CGG	0.747797	7_2:+73839240	None:intergenic
AACGGCGGAGAGGTAAACAG+GGG	0.752615	7_2:+73839255	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	TAACCGTTTATATTAATTTT+TGG	-	chr7_2:73839516-73839535	Msa1075520:five_prime_UTR	15.0%
!!!	AACCGTTTATATTAATTTTT+GGG	-	chr7_2:73839517-73839536	Msa1075520:five_prime_UTR	15.0%
!!!	TAACCGTTTATATTAATTTT+TGG	-	chr7_2:73839516-73839535	Msa1075520:five_prime_UTR	15.0%
!!!	AACCGTTTATATTAATTTTT+GGG	-	chr7_2:73839517-73839536	Msa1075520:five_prime_UTR	15.0%
!!	TTCAAAACAGAAAAAAACAA+TGG	-	chr7_2:73839233-73839252	Msa1075520:intron	20.0%
!!	CACCCAAAAATTAATATAAA+CGG	+	chr7_2:73839522-73839541	None:intergenic	20.0%
!!	TTCAAAACAGAAAAAAACAA+TGG	-	chr7_2:73839233-73839252	Msa1075520:intron	20.0%
!!	CACCCAAAAATTAATATAAA+CGG	+	chr7_2:73839522-73839541	None:intergenic	20.0%
!	AAAGCAAAGAAAAATTACCT+CGG	+	chr7_2:73839457-73839476	None:intergenic	25.0%
!!!	CGTTTATATTAATTTTTGGG+TGG	-	chr7_2:73839520-73839539	Msa1075520:five_prime_UTR	25.0%
!!!	ATATTAATTTTTGGGTGGTT+AGG	-	chr7_2:73839525-73839544	Msa1075520:five_prime_UTR	25.0%
!!!	TCTTATTTTGAGATTAGGTT+AGG	-	chr7_2:73839855-73839874	Msa1075520:five_prime_UTR	25.0%
!	AAAGCAAAGAAAAATTACCT+CGG	+	chr7_2:73839457-73839476	None:intergenic	25.0%
!!!	CGTTTATATTAATTTTTGGG+TGG	-	chr7_2:73839520-73839539	Msa1075520:five_prime_UTR	25.0%
!!!	ATATTAATTTTTGGGTGGTT+AGG	-	chr7_2:73839525-73839544	Msa1075520:five_prime_UTR	25.0%
!!!	TCTTATTTTGAGATTAGGTT+AGG	-	chr7_2:73839855-73839874	Msa1075520:five_prime_UTR	25.0%
	TGTTTATACTAGCAATAGAG+AGG	-	chr7_2:73838939-73838958	Msa1075520:CDS	30.0%
!!!	AAACAAGTTTGAGTTTTGAG+CGG	+	chr7_2:73839078-73839097	None:intergenic	30.0%
!!!	CAAAACTCAAACTTGTTTTG+CGG	-	chr7_2:73839080-73839099	Msa1075520:CDS	30.0%
!!	AAGTTTAATTGAGTTGGCTT+TGG	+	chr7_2:73839175-73839194	None:intergenic	30.0%
	GTTGTGAAGTTTAATTGAGT+TGG	+	chr7_2:73839181-73839200	None:intergenic	30.0%
	TGAAGAATTGAGCAAATTGT+TGG	-	chr7_2:73839633-73839652	Msa1075520:five_prime_UTR	30.0%
	GAAGAATTGAGCAAATTGTT+GGG	-	chr7_2:73839634-73839653	Msa1075520:five_prime_UTR	30.0%
!!	TTTAATGTAGCATTTGGTGT+TGG	-	chr7_2:73839772-73839791	Msa1075520:five_prime_UTR	30.0%
	TGTTGGATCGTTAAAATGTT+AGG	-	chr7_2:73839789-73839808	Msa1075520:five_prime_UTR	30.0%
!!!	CGTGTTCTTATTTTGAGATT+AGG	-	chr7_2:73839850-73839869	Msa1075520:five_prime_UTR	30.0%
	GATTAGGTTAGGATTAATGT+TGG	-	chr7_2:73839866-73839885	Msa1075520:five_prime_UTR	30.0%
	TGTTTATACTAGCAATAGAG+AGG	-	chr7_2:73838939-73838958	Msa1075520:CDS	30.0%
!!!	AAACAAGTTTGAGTTTTGAG+CGG	+	chr7_2:73839078-73839097	None:intergenic	30.0%
!!!	CAAAACTCAAACTTGTTTTG+CGG	-	chr7_2:73839080-73839099	Msa1075520:CDS	30.0%
!!	AAGTTTAATTGAGTTGGCTT+TGG	+	chr7_2:73839175-73839194	None:intergenic	30.0%
	GTTGTGAAGTTTAATTGAGT+TGG	+	chr7_2:73839181-73839200	None:intergenic	30.0%
	TGAAGAATTGAGCAAATTGT+TGG	-	chr7_2:73839633-73839652	Msa1075520:five_prime_UTR	30.0%
	GAAGAATTGAGCAAATTGTT+GGG	-	chr7_2:73839634-73839653	Msa1075520:five_prime_UTR	30.0%
!!	TTTAATGTAGCATTTGGTGT+TGG	-	chr7_2:73839772-73839791	Msa1075520:five_prime_UTR	30.0%
	TGTTGGATCGTTAAAATGTT+AGG	-	chr7_2:73839789-73839808	Msa1075520:five_prime_UTR	30.0%
!!!	CGTGTTCTTATTTTGAGATT+AGG	-	chr7_2:73839850-73839869	Msa1075520:five_prime_UTR	30.0%
	GATTAGGTTAGGATTAATGT+TGG	-	chr7_2:73839866-73839885	Msa1075520:five_prime_UTR	30.0%
	ACATCAAAGTACACTCTCTT+TGG	+	chr7_2:73838922-73838941	None:intergenic	35.0%
!!!	AACAAGTTTGAGTTTTGAGC+GGG	+	chr7_2:73839077-73839096	None:intergenic	35.0%
	GTTTCGTTCTTGATTCTGAT+TGG	+	chr7_2:73839141-73839160	None:intergenic	35.0%
!!	GTTGGCTTTGGTTTATATAG+AGG	+	chr7_2:73839163-73839182	None:intergenic	35.0%
	CAAACTCAAAATAACACTCG+AGG	+	chr7_2:73839483-73839502	None:intergenic	35.0%
!!!	ATTTTTGGGTGGTTAGGTTT+TGG	-	chr7_2:73839531-73839550	Msa1075520:five_prime_UTR	35.0%
	AACAAAGTCTGGTGAATGTT+AGG	+	chr7_2:73839691-73839710	None:intergenic	35.0%
	AGAAATTGGATCTGTTAGTC+AGG	-	chr7_2:73839738-73839757	Msa1075520:five_prime_UTR	35.0%
!	ATCTGTTAGTCAGGAGTTTT+AGG	-	chr7_2:73839747-73839766	Msa1075520:five_prime_UTR	35.0%
!	TCTGTTAGTCAGGAGTTTTA+GGG	-	chr7_2:73839748-73839767	Msa1075520:five_prime_UTR	35.0%
	TAGGGGTTTAATGTAGCATT+TGG	-	chr7_2:73839766-73839785	Msa1075520:five_prime_UTR	35.0%
	ACATCAAAGTACACTCTCTT+TGG	+	chr7_2:73838922-73838941	None:intergenic	35.0%
!!!	AACAAGTTTGAGTTTTGAGC+GGG	+	chr7_2:73839077-73839096	None:intergenic	35.0%
	GTTTCGTTCTTGATTCTGAT+TGG	+	chr7_2:73839141-73839160	None:intergenic	35.0%
!!	GTTGGCTTTGGTTTATATAG+AGG	+	chr7_2:73839163-73839182	None:intergenic	35.0%
	CAAACTCAAAATAACACTCG+AGG	+	chr7_2:73839483-73839502	None:intergenic	35.0%
!!!	ATTTTTGGGTGGTTAGGTTT+TGG	-	chr7_2:73839531-73839550	Msa1075520:five_prime_UTR	35.0%
	AACAAAGTCTGGTGAATGTT+AGG	+	chr7_2:73839691-73839710	None:intergenic	35.0%
	AGAAATTGGATCTGTTAGTC+AGG	-	chr7_2:73839738-73839757	Msa1075520:five_prime_UTR	35.0%
!	ATCTGTTAGTCAGGAGTTTT+AGG	-	chr7_2:73839747-73839766	Msa1075520:five_prime_UTR	35.0%
!	TCTGTTAGTCAGGAGTTTTA+GGG	-	chr7_2:73839748-73839767	Msa1075520:five_prime_UTR	35.0%
	TAGGGGTTTAATGTAGCATT+TGG	-	chr7_2:73839766-73839785	Msa1075520:five_prime_UTR	35.0%
!!	TTTTGATTGCCGCTCAAAAG+CGG	-	chr7_2:73838973-73838992	Msa1075520:CDS	40.0%
!!	TGATTCTGATTGGCTTAGAG+AGG	+	chr7_2:73839131-73839150	None:intergenic	40.0%
	AACAACCAAGAAAGGTGGAA+GGG	-	chr7_2:73839272-73839291	Msa1075520:CDS	40.0%
	TATTCTCATCGTGTTGGATC+TGG	-	chr7_2:73839390-73839409	Msa1075520:CDS	40.0%
	CAAGGGATAACAAGAAGACA+AGG	-	chr7_2:73839572-73839591	Msa1075520:five_prime_UTR	40.0%
	AGAAGACAAGGATTGTACCA+AGG	-	chr7_2:73839584-73839603	Msa1075520:five_prime_UTR	40.0%
	GGACATGTGACTATTGCTAA+TGG	-	chr7_2:73839655-73839674	Msa1075520:five_prime_UTR	40.0%
	CATGTGACTATTGCTAATGG+TGG	-	chr7_2:73839658-73839677	Msa1075520:five_prime_UTR	40.0%
!!	CTGTTAGTCAGGAGTTTTAG+GGG	-	chr7_2:73839749-73839768	Msa1075520:five_prime_UTR	40.0%
!!	TTTTGATTGCCGCTCAAAAG+CGG	-	chr7_2:73838973-73838992	Msa1075520:CDS	40.0%
!!	TGATTCTGATTGGCTTAGAG+AGG	+	chr7_2:73839131-73839150	None:intergenic	40.0%
	AACAACCAAGAAAGGTGGAA+GGG	-	chr7_2:73839272-73839291	Msa1075520:CDS	40.0%
	TATTCTCATCGTGTTGGATC+TGG	-	chr7_2:73839390-73839409	Msa1075520:CDS	40.0%
	CAAGGGATAACAAGAAGACA+AGG	-	chr7_2:73839572-73839591	Msa1075520:five_prime_UTR	40.0%
	AGAAGACAAGGATTGTACCA+AGG	-	chr7_2:73839584-73839603	Msa1075520:five_prime_UTR	40.0%
	GGACATGTGACTATTGCTAA+TGG	-	chr7_2:73839655-73839674	Msa1075520:five_prime_UTR	40.0%
	CATGTGACTATTGCTAATGG+TGG	-	chr7_2:73839658-73839677	Msa1075520:five_prime_UTR	40.0%
!!	CTGTTAGTCAGGAGTTTTAG+GGG	-	chr7_2:73839749-73839768	Msa1075520:five_prime_UTR	40.0%
!!	TTCGTGAATCCGCTTTTGAG+CGG	+	chr7_2:73838985-73839004	None:intergenic	45.0%
	GCAACAGCAACAACCAAGAA+AGG	-	chr7_2:73839264-73839283	Msa1075520:CDS	45.0%
	ACAGCAACAACCAAGAAAGG+TGG	-	chr7_2:73839267-73839286	Msa1075520:CDS	45.0%
	CAACAACCAAGAAAGGTGGA+AGG	-	chr7_2:73839271-73839290	Msa1075520:CDS	45.0%
	ACAACCAAGAAAGGTGGAAG+GGG	-	chr7_2:73839273-73839292	Msa1075520:CDS	45.0%
!!!	GAAACGGACTTGGTGGTTTT+GGG	+	chr7_2:73839303-73839322	None:intergenic	45.0%
	GGCTTTGCTTGATCTGGAAA+CGG	+	chr7_2:73839319-73839338	None:intergenic	45.0%
	GTTTCCAGATCAAGCAAAGC+CGG	-	chr7_2:73839318-73839337	Msa1075520:CDS	45.0%
	GAGAATAACGACCTGCTTTG+AGG	+	chr7_2:73839377-73839396	None:intergenic	45.0%
	GGTCGTTATTCTCATCGTGT+TGG	-	chr7_2:73839384-73839403	Msa1075520:CDS	45.0%
!!	ACAGAGGTATTCAAGAACGG+CGG	+	chr7_2:73839433-73839452	None:intergenic	45.0%
!!	GGCACAGAGGTATTCAAGAA+CGG	+	chr7_2:73839436-73839455	None:intergenic	45.0%
	GAAAAATTACCTCGGCACAG+AGG	+	chr7_2:73839449-73839468	None:intergenic	45.0%
!!!	GGGTGGTTAGGTTTTGGAAT+TGG	-	chr7_2:73839537-73839556	Msa1075520:five_prime_UTR	45.0%
!!!	GGTTAGGTTTTGGAATTGGC+TGG	-	chr7_2:73839541-73839560	Msa1075520:five_prime_UTR	45.0%
!	AATTGGCTGGTAATGCTGCA+AGG	-	chr7_2:73839554-73839573	Msa1075520:five_prime_UTR	45.0%
!	ATTGGCTGGTAATGCTGCAA+GGG	-	chr7_2:73839555-73839574	Msa1075520:five_prime_UTR	45.0%
	CCTTCTTTGGCAACAAAGTC+TGG	+	chr7_2:73839702-73839721	None:intergenic	45.0%
	CCAGACTTTGTTGCCAAAGA+AGG	-	chr7_2:73839699-73839718	Msa1075520:five_prime_UTR	45.0%
	GACTTTGTTGCCAAAGAAGG+TGG	-	chr7_2:73839702-73839721	Msa1075520:five_prime_UTR	45.0%
	TTCTTTCCAGCCACCTTCTT+TGG	+	chr7_2:73839715-73839734	None:intergenic	45.0%
	AAAGAAGGTGGCTGGAAAGA+AGG	-	chr7_2:73839714-73839733	Msa1075520:five_prime_UTR	45.0%
	AAGAAGGTGGCTGGAAAGAA+GGG	-	chr7_2:73839715-73839734	Msa1075520:five_prime_UTR	45.0%
	GCTGGAAAGAAGGGAGAAAT+TGG	-	chr7_2:73839724-73839743	Msa1075520:five_prime_UTR	45.0%
!!	TTCGTGAATCCGCTTTTGAG+CGG	+	chr7_2:73838985-73839004	None:intergenic	45.0%
	GCAACAGCAACAACCAAGAA+AGG	-	chr7_2:73839264-73839283	Msa1075520:CDS	45.0%
	ACAGCAACAACCAAGAAAGG+TGG	-	chr7_2:73839267-73839286	Msa1075520:CDS	45.0%
	CAACAACCAAGAAAGGTGGA+AGG	-	chr7_2:73839271-73839290	Msa1075520:CDS	45.0%
	ACAACCAAGAAAGGTGGAAG+GGG	-	chr7_2:73839273-73839292	Msa1075520:CDS	45.0%
!!!	GAAACGGACTTGGTGGTTTT+GGG	+	chr7_2:73839303-73839322	None:intergenic	45.0%
	GGCTTTGCTTGATCTGGAAA+CGG	+	chr7_2:73839319-73839338	None:intergenic	45.0%
	GTTTCCAGATCAAGCAAAGC+CGG	-	chr7_2:73839318-73839337	Msa1075520:CDS	45.0%
	GAGAATAACGACCTGCTTTG+AGG	+	chr7_2:73839377-73839396	None:intergenic	45.0%
	GGTCGTTATTCTCATCGTGT+TGG	-	chr7_2:73839384-73839403	Msa1075520:CDS	45.0%
!!	ACAGAGGTATTCAAGAACGG+CGG	+	chr7_2:73839433-73839452	None:intergenic	45.0%
!!	GGCACAGAGGTATTCAAGAA+CGG	+	chr7_2:73839436-73839455	None:intergenic	45.0%
	GAAAAATTACCTCGGCACAG+AGG	+	chr7_2:73839449-73839468	None:intergenic	45.0%
!!!	GGGTGGTTAGGTTTTGGAAT+TGG	-	chr7_2:73839537-73839556	Msa1075520:five_prime_UTR	45.0%
!!!	GGTTAGGTTTTGGAATTGGC+TGG	-	chr7_2:73839541-73839560	Msa1075520:five_prime_UTR	45.0%
!	AATTGGCTGGTAATGCTGCA+AGG	-	chr7_2:73839554-73839573	Msa1075520:five_prime_UTR	45.0%
!	ATTGGCTGGTAATGCTGCAA+GGG	-	chr7_2:73839555-73839574	Msa1075520:five_prime_UTR	45.0%
	CCTTCTTTGGCAACAAAGTC+TGG	+	chr7_2:73839702-73839721	None:intergenic	45.0%
	CCAGACTTTGTTGCCAAAGA+AGG	-	chr7_2:73839699-73839718	Msa1075520:five_prime_UTR	45.0%
	GACTTTGTTGCCAAAGAAGG+TGG	-	chr7_2:73839702-73839721	Msa1075520:five_prime_UTR	45.0%
	TTCTTTCCAGCCACCTTCTT+TGG	+	chr7_2:73839715-73839734	None:intergenic	45.0%
	AAAGAAGGTGGCTGGAAAGA+AGG	-	chr7_2:73839714-73839733	Msa1075520:five_prime_UTR	45.0%
	AAGAAGGTGGCTGGAAAGAA+GGG	-	chr7_2:73839715-73839734	Msa1075520:five_prime_UTR	45.0%
	GCTGGAAAGAAGGGAGAAAT+TGG	-	chr7_2:73839724-73839743	Msa1075520:five_prime_UTR	45.0%
!!!	CTTTTCAAGTTTCGCTGGCG+TGG	+	chr7_2:73839032-73839051	None:intergenic	50.0%
	CACGCCAGCGAAACTTGAAA+AGG	-	chr7_2:73839030-73839049	Msa1075520:CDS	50.0%
!!!	CACGCCTTTTCAAGTTTCGC+TGG	+	chr7_2:73839037-73839056	None:intergenic	50.0%
	TGGCTTAGAGAGGTTTCACG+CGG	+	chr7_2:73839121-73839140	None:intergenic	50.0%
	TTTGCCCCTTCCACCTTTCT+TGG	+	chr7_2:73839280-73839299	None:intergenic	50.0%
!!!	GGAAACGGACTTGGTGGTTT+TGG	+	chr7_2:73839304-73839323	None:intergenic	50.0%
!	TGATCTGGAAACGGACTTGG+TGG	+	chr7_2:73839310-73839329	None:intergenic	50.0%
!	GCTTGATCTGGAAACGGACT+TGG	+	chr7_2:73839313-73839332	None:intergenic	50.0%
	TCTTGAATACCTCTGTGCCG+AGG	-	chr7_2:73839437-73839456	Msa1075520:exon	50.0%
!!	ACAGCTAGTTGAAGGTGCCT+TGG	+	chr7_2:73839604-73839623	None:intergenic	50.0%
	CGTTCCTCACAGCTAGTTGA+AGG	+	chr7_2:73839612-73839631	None:intergenic	50.0%
	TTGTTGCCAAAGAAGGTGGC+TGG	-	chr7_2:73839706-73839725	Msa1075520:five_prime_UTR	50.0%
!!!	CTTTTCAAGTTTCGCTGGCG+TGG	+	chr7_2:73839032-73839051	None:intergenic	50.0%
	CACGCCAGCGAAACTTGAAA+AGG	-	chr7_2:73839030-73839049	Msa1075520:CDS	50.0%
!!!	CACGCCTTTTCAAGTTTCGC+TGG	+	chr7_2:73839037-73839056	None:intergenic	50.0%
	TGGCTTAGAGAGGTTTCACG+CGG	+	chr7_2:73839121-73839140	None:intergenic	50.0%
	TTTGCCCCTTCCACCTTTCT+TGG	+	chr7_2:73839280-73839299	None:intergenic	50.0%
!!!	GGAAACGGACTTGGTGGTTT+TGG	+	chr7_2:73839304-73839323	None:intergenic	50.0%
!	TGATCTGGAAACGGACTTGG+TGG	+	chr7_2:73839310-73839329	None:intergenic	50.0%
!	GCTTGATCTGGAAACGGACT+TGG	+	chr7_2:73839313-73839332	None:intergenic	50.0%
	TCTTGAATACCTCTGTGCCG+AGG	-	chr7_2:73839437-73839456	Msa1075520:exon	50.0%
!!	ACAGCTAGTTGAAGGTGCCT+TGG	+	chr7_2:73839604-73839623	None:intergenic	50.0%
	CGTTCCTCACAGCTAGTTGA+AGG	+	chr7_2:73839612-73839631	None:intergenic	50.0%
	TTGTTGCCAAAGAAGGTGGC+TGG	-	chr7_2:73839706-73839725	Msa1075520:five_prime_UTR	50.0%
!!!	CTTGTTTTGCGGTGCCACGT+TGG	-	chr7_2:73839091-73839110	Msa1075520:CDS	55.0%
!	GAGACCGGCTTTGCTTGATC+TGG	+	chr7_2:73839325-73839344	None:intergenic	55.0%
!	CTTTGAGGAAGCGAGCGATG+CGG	+	chr7_2:73839362-73839381	None:intergenic	55.0%
	ATCGCTCGCTTCCTCAAAGC+AGG	-	chr7_2:73839363-73839382	Msa1075520:CDS	55.0%
	AACGGCGGAGAGGTAAACAG+GGG	+	chr7_2:73839418-73839437	None:intergenic	55.0%
	GAACGGCGGAGAGGTAAACA+GGG	+	chr7_2:73839419-73839438	None:intergenic	55.0%
	AGAACGGCGGAGAGGTAAAC+AGG	+	chr7_2:73839420-73839439	None:intergenic	55.0%
	GGTATTCAAGAACGGCGGAG+AGG	+	chr7_2:73839428-73839447	None:intergenic	55.0%
	GGCACCTTCAACTAGCTGTG+AGG	-	chr7_2:73839605-73839624	Msa1075520:five_prime_UTR	55.0%
!!!	CTTGTTTTGCGGTGCCACGT+TGG	-	chr7_2:73839091-73839110	Msa1075520:CDS	55.0%
!	GAGACCGGCTTTGCTTGATC+TGG	+	chr7_2:73839325-73839344	None:intergenic	55.0%
!	CTTTGAGGAAGCGAGCGATG+CGG	+	chr7_2:73839362-73839381	None:intergenic	55.0%
	ATCGCTCGCTTCCTCAAAGC+AGG	-	chr7_2:73839363-73839382	Msa1075520:CDS	55.0%
	AACGGCGGAGAGGTAAACAG+GGG	+	chr7_2:73839418-73839437	None:intergenic	55.0%
	GAACGGCGGAGAGGTAAACA+GGG	+	chr7_2:73839419-73839438	None:intergenic	55.0%
	AGAACGGCGGAGAGGTAAAC+AGG	+	chr7_2:73839420-73839439	None:intergenic	55.0%
	GGTATTCAAGAACGGCGGAG+AGG	+	chr7_2:73839428-73839447	None:intergenic	55.0%
	GGCACCTTCAACTAGCTGTG+AGG	-	chr7_2:73839605-73839624	Msa1075520:five_prime_UTR	55.0%
	TTTCACGCGGATCGCCAACG+TGG	+	chr7_2:73839108-73839127	None:intergenic	60.0%
	TTTCACGCGGATCGCCAACG+TGG	+	chr7_2:73839108-73839127	None:intergenic	60.0%
	GCCAACGGGGAACTGGAGAC+CGG	+	chr7_2:73839340-73839359	None:intergenic	65.0%
	AAGCGAGCGATGCGGCCAAC+GGG	+	chr7_2:73839354-73839373	None:intergenic	65.0%
	GAAGCGAGCGATGCGGCCAA+CGG	+	chr7_2:73839355-73839374	None:intergenic	65.0%
	GCCAACGGGGAACTGGAGAC+CGG	+	chr7_2:73839340-73839359	None:intergenic	65.0%
	AAGCGAGCGATGCGGCCAAC+GGG	+	chr7_2:73839354-73839373	None:intergenic	65.0%
	GAAGCGAGCGATGCGGCCAA+CGG	+	chr7_2:73839355-73839374	None:intergenic	65.0%
	GCCGGTCTCCAGTTCCCCGT+TGG	-	chr7_2:73839336-73839355	Msa1075520:CDS	70.0%
	CGATGCGGCCAACGGGGAAC+TGG	+	chr7_2:73839347-73839366	None:intergenic	70.0%
	AGCGAGCGATGCGGCCAACG+GGG	+	chr7_2:73839353-73839372	None:intergenic	70.0%
	GCCGGTCTCCAGTTCCCCGT+TGG	-	chr7_2:73839336-73839355	Msa1075520:CDS	70.0%
	CGATGCGGCCAACGGGGAAC+TGG	+	chr7_2:73839347-73839366	None:intergenic	70.0%
	AGCGAGCGATGCGGCCAACG+GGG	+	chr7_2:73839353-73839372	None:intergenic	70.0%

Chromosome	Type	Strat	End	Strand	Name
chr7_2	gene	73838742	73839950	73838742	ID=Msa1075520;Name=Msa1075520
chr7_2	mRNA	73838742	73839950	73838742	ID=Msa1075520-mRNA-1;Parent=Msa1075520;Name=Msa1075520-mRNA-1;_AED=0.03;_eAED=0.03;_QI=510\|1\|1\|1\|1\|1\|2\|182\|142
chr7_2	exon	73838742	73839145	73838742	ID=Msa1075520-mRNA-1:exon:17224;Parent=Msa1075520-mRNA-1
chr7_2	exon	73839234	73839950	73839234	ID=Msa1075520-mRNA-1:exon:17223;Parent=Msa1075520-mRNA-1
chr7_2	five_prime_UTR	73839441	73839950	73839441	ID=Msa1075520-mRNA-1:five_prime_utr;Parent=Msa1075520-mRNA-1
chr7_2	CDS	73839234	73839440	73839234	ID=Msa1075520-mRNA-1:cds;Parent=Msa1075520-mRNA-1
chr7_2	CDS	73838924	73839145	73838924	ID=Msa1075520-mRNA-1:cds;Parent=Msa1075520-mRNA-1
chr7_2	three_prime_UTR	73838742	73838923	73838742	ID=Msa1075520-mRNA-1:three_prime_utr;Parent=Msa1075520-mRNA-1

Gene Sequence

>Msa1075520

ATGGCTTCAGATGCAACAGCAACAACCAAGAAAGGTGGAAGGGGCAAACCCAAAACCACCAAGTCCGTTTCCAGATCAAGCAAAGCCGGTCTCCAGTTCCCCGTTGGCCGCATCGCTCGCTTCCTCAAAGCAGGTCGTTATTCTCATCGTGTTGGATCTGGTTCCCCTGTTTACCTCTCCGCCGTTCTTGAATACCTCTGTGCCGAGGTTTTGGAATTGGCTGGTAATGCTGCAAGGGATAACAAGAAGACAAGGATTGTACCAAGGCACCTTCAACTAGCTGTGAGGAACGATGAAGAATTGAGCAAATTGTTGGGACATGTGACTATTGCTAATGGTGGTGTTTTGCCTAACATTCACCAGACTTTGTTGCCAAAGAAGGTGGCTGGAAAGAAGGGAGAAATTGGATCTGTTAGTCAGGAGTTTTAG

Protein sequence

>Msa1075520

MASDATATTKKGGRGKPKTTKSVSRSSKAGLQFPVGRIARFLKAGRYSHRVGSGSPVYLSAVLEYLCAEVLELAGNAARDNKKTRIVPRHLQLAVRNDEELSKLLGHVTIANGGVLPNIHQTLLPKKVAGKKGEIGSVSQEF*