AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1359690


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1359690 MtrunA17_Chr1g0150131 94.118 187 8 1 1 187 1 184 1.03e-107 306
Msa1359690 MtrunA17_Chr3g0136871 64.474 152 47 3 25 176 24 168 6.20e-64 195
Msa1359690 MtrunA17_Chr7g0256441 56.757 148 40 4 25 172 24 147 9.71e-50 157
Msa1359690 MtrunA17_Chr8g0360371 47.107 121 58 3 12 132 11 125 6.35e-35 124
Msa1359690 MtrunA17_Chr4g0041811 49.541 109 54 1 24 132 28 135 2.59e-34 120
Msa1359690 MtrunA17_Chr2g0317231 43.151 146 79 3 10 155 8 149 2.69e-32 122
Msa1359690 MtrunA17_Chr6g0458331 48.182 110 54 2 21 129 29 136 1.13e-31 112
Msa1359690 MtrunA17_Chr2g0324711 41.818 165 77 7 11 163 11 168 6.15e-30 112
Msa1359690 MtrunA17_Chr2g0324721 38.286 175 88 4 30 187 29 200 1.59e-29 107
Msa1359690 MtrunA17_Chr4g0040291 44.615 130 68 3 25 153 22 148 2.01e-29 107
Msa1359690 MtrunA17_Chr2g0331181 37.654 162 87 7 4 162 2 152 2.05e-28 104
Msa1359690 MtrunA17_Chr4g0062341 36.957 138 78 4 1 132 1 135 4.69e-27 100
Msa1359690 MtrunA17_Chr4g0062311 36.957 138 78 4 1 132 1 135 4.69e-27 100
Msa1359690 MtrunA17_Chr4g0039721 36.913 149 81 5 1 143 1 142 6.29e-27 100
Msa1359690 MtrunA17_Chr2g0319611 41.818 110 61 3 25 132 23 131 4.77e-26 100
Msa1359690 MtrunA17_Chr8g0385021 36.686 169 91 4 12 167 7 172 1.84e-24 96.7
Msa1359690 MtrunA17_Chr4g0073901 37.302 126 74 1 8 128 4 129 4.12e-24 93.6
Msa1359690 MtrunA17_Chr8g0385031 42.373 118 63 3 11 128 10 122 5.64e-23 93.2
Msa1359690 MtrunA17_Chr2g0323021 37.013 154 87 5 15 168 13 156 6.64e-23 91.7
Msa1359690 MtrunA17_Chr4g0073921 37.405 131 79 3 1 129 1 130 7.16e-23 92.4
Msa1359690 MtrunA17_Chr1g0188981 39.796 98 58 1 32 128 32 129 2.64e-22 89.0
Msa1359690 MtrunA17_Chr5g0394321 26.705 176 121 3 12 187 11 178 6.63e-22 87.8
Msa1359690 MtrunA17_Chr8g0385041 40.625 128 63 5 30 148 27 150 1.80e-21 89.4
Msa1359690 MtrunA17_Chr4g0064041 32.738 168 92 2 32 178 194 361 3.73e-20 86.3
Msa1359690 MtrunA17_Chr4g0064041 31.852 135 89 2 12 146 13 144 5.83e-18 80.1
Msa1359690 MtrunA17_Chr1g0205701 35.833 120 75 1 49 166 43 162 1.27e-18 79.3
Msa1359690 MtrunA17_Chr3g0127521 32.955 176 83 5 12 163 8 172 8.50e-18 79.0
Msa1359690 MtrunA17_Chr2g0306461 36.885 122 66 4 15 128 7 125 1.30e-16 74.3
Msa1359690 MtrunA17_Chr6g0481491 33.333 114 69 3 17 130 18 124 1.52e-16 74.3
Msa1359690 MtrunA17_Chr4g0064031 34.375 96 61 2 25 118 25 120 2.08e-16 72.8
Msa1359690 MtrunA17_Chr8g0335531 36.719 128 72 4 5 130 2 122 2.92e-16 73.2
Msa1359690 MtrunA17_Chr1g0196801 31.613 155 93 6 32 184 26 169 4.94e-16 72.4
Msa1359690 MtrunA17_Chr8g0335571 35.938 128 73 4 5 130 2 122 1.52e-15 71.2
Msa1359690 MtrunA17_Chr8g0387804 37.113 97 60 1 32 128 32 127 6.63e-15 68.2
Msa1359690 MtrunA17_Chr8g0379081 38.525 122 62 4 75 186 1 119 1.00e-14 67.4
Msa1359690 MtrunA17_Chr4g0033131 27.869 122 77 3 17 128 9 129 1.95e-14 67.8
Msa1359690 MtrunA17_Chr4g0033531 27.869 122 77 3 17 128 9 129 1.95e-14 67.8
Msa1359690 MtrunA17_Chr2g0289741 34.426 122 65 3 44 164 39 146 5.70e-14 66.6
Msa1359690 MtrunA17_Chr6g0483981 33.571 140 82 5 37 172 35 167 8.78e-14 68.9
Msa1359690 MtrunA17_Chr7g0253641 32.558 129 81 3 7 134 4 127 1.07e-13 67.0
Msa1359690 MtrunA17_Chr6g0459441 36.735 98 56 4 32 128 29 121 4.73e-13 64.3
Msa1359690 MtrunA17_Chr8g0380901 32.759 116 74 2 11 126 7 118 8.10e-13 62.4
Msa1359690 MtrunA17_Chr1g0211101 22.995 187 121 5 1 182 1 169 9.06e-13 63.5
Msa1359690 MtrunA17_Chr3g0132441 40.741 81 47 1 48 128 41 120 1.14e-12 63.5
Msa1359690 MtrunA17_Chr3g0132411 39.506 81 48 1 48 128 80 159 2.00e-12 62.4
Msa1359690 MtrunA17_Chr3g0132431 39.506 81 48 1 48 128 41 120 2.46e-12 62.4
Msa1359690 MtrunA17_Chr7g0253631 30.579 121 79 2 14 134 12 127 5.53e-12 62.4
Msa1359690 MtrunA17_Chr7g0253761 29.457 129 85 3 7 134 4 127 8.64e-12 60.8
Msa1359690 MtrunA17_Chr6g0453921 30.827 133 81 5 4 131 11 137 1.58e-11 60.1
Msa1359690 MtrunA17_Chr3g0132701 37.634 93 53 2 37 128 34 122 1.99e-11 60.5
Msa1359690 MtrunA17_Chr3g0132511 37.634 93 53 2 37 128 34 122 6.54e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1359690 AT4G31840.1 49.730 185 77 4 8 187 2 175 1.10e-57 179
Msa1359690 AT2G25060.1 50.286 175 75 5 11 184 15 178 1.53e-55 174
Msa1359690 AT5G25090.1 52.459 122 58 0 11 132 9 130 5.18e-46 150
Msa1359690 AT4G30590.1 59.048 105 43 0 28 132 28 132 8.54e-45 147
Msa1359690 AT5G57920.1 44.079 152 82 3 26 177 21 169 1.02e-43 144
Msa1359690 AT5G57920.3 44.079 152 82 3 26 177 53 201 1.08e-43 145
Msa1359690 AT5G57920.2 44.079 152 82 3 26 177 20 168 1.30e-43 144
Msa1359690 AT2G23990.1 50.000 148 60 3 8 150 3 141 4.95e-41 138
Msa1359690 AT2G23990.2 44.311 167 60 4 8 150 3 160 2.57e-36 126
Msa1359690 AT3G20570.1 41.104 163 82 5 12 164 15 173 1.64e-35 124
Msa1359690 AT5G14345.1 57.143 91 37 1 40 130 28 116 2.25e-31 111
Msa1359690 AT5G53870.2 40.252 159 84 5 10 161 9 163 1.22e-29 112
Msa1359690 AT5G53870.1 40.252 159 84 5 10 161 9 163 1.57e-29 112
Msa1359690 AT4G28365.1 40.123 162 88 6 13 168 11 169 1.72e-29 108
Msa1359690 AT4G27520.1 44.628 121 63 3 12 132 16 132 2.05e-28 108
Msa1359690 AT3G18590.1 45.000 120 60 4 12 129 12 127 1.50e-27 102
Msa1359690 AT4G32490.1 35.429 175 84 5 13 166 11 177 4.59e-26 99.8
Msa1359690 AT1G48940.1 38.889 126 69 3 13 132 6 129 2.17e-25 97.1
Msa1359690 AT2G31050.1 36.170 141 84 3 5 145 6 140 3.56e-22 89.4
Msa1359690 AT1G79800.1 34.459 148 85 4 8 147 8 151 4.10e-22 89.0
Msa1359690 AT1G64640.1 35.897 117 74 1 32 148 36 151 1.83e-21 87.0
Msa1359690 AT2G26720.1 33.813 139 84 3 11 149 12 142 1.82e-20 85.1
Msa1359690 AT2G32300.1 35.714 140 74 5 25 160 23 150 5.57e-19 82.0
Msa1359690 AT2G32300.2 35.714 140 74 5 25 160 53 180 1.83e-18 81.3
Msa1359690 AT5G20230.1 34.426 122 76 3 26 145 23 142 4.76e-17 75.9
Msa1359690 AT5G26330.1 37.500 80 50 0 50 129 43 122 2.05e-16 73.9
Msa1359690 AT5G07475.1 28.571 182 117 6 12 187 10 184 6.81e-16 72.4
Msa1359690 AT3G60270.1 36.364 99 58 2 32 130 29 122 2.27e-14 68.6
Msa1359690 AT1G72230.1 31.967 122 72 2 48 159 38 158 3.45e-13 65.1
Msa1359690 AT1G45063.2 31.933 119 75 3 12 129 14 127 8.75e-13 65.5
Msa1359690 AT1G45063.1 31.933 119 75 3 12 129 14 127 1.25e-12 65.5
Msa1359690 AT3G27200.1 29.839 124 76 3 11 129 5 122 3.25e-12 62.4

Find 56 sgRNAs with CRISPR-Local

Find 166 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCATCATCTTGTTCTCTTT+TGG 0.177913 tig0016715:-416618 Msa1359690:CDS
GCAGAAATTATGGATGATTT+TGG 0.191043 tig0016715:+416720 None:intergenic
TTGGTTCTTGTTGTTCTCTT+TGG 0.235363 tig0016715:-416599 Msa1359690:CDS
TCTTAAAGATGCAGAAATTA+TGG 0.244416 tig0016715:+416710 None:intergenic
CTGTGGTTGTCATGAGTCTA+AGG 0.276529 tig0016715:-415892 Msa1359690:CDS
AAATTCCATTATATATGTTT+TGG 0.286437 tig0016715:-415548 Msa1359690:three_prime_UTR
CCCATCATTGTAGTGTTTGA+TGG 0.297797 tig0016715:+416000 None:intergenic
TGAATATCCAAACTAAAATA+AGG 0.318116 tig0016715:+415692 None:intergenic
TTCATAATATTAGTATTATT+AGG 0.321476 tig0016715:-415673 Msa1359690:three_prime_UTR
TCTCCACTGATGTAGTAGTA+TGG 0.331847 tig0016715:+415947 None:intergenic
AAAGTGAGATTTGATCATTC+TGG 0.347650 tig0016715:-415971 Msa1359690:CDS
CAAGACCAAAACATATATAA+TGG 0.357893 tig0016715:+415543 None:intergenic
AGTATTATTAGGATTAAGAT+TGG 0.382883 tig0016715:-415662 Msa1359690:three_prime_UTR
AATCTGATTCTCTCAACAAA+TGG 0.402045 tig0016715:-416508 Msa1359690:CDS
GGAGCAACAGCTGAGCCAGC+TGG 0.404423 tig0016715:+415809 None:intergenic
CTACTACATCAGTGGAGAAA+AGG 0.404851 tig0016715:-415942 Msa1359690:CDS
CCCATCAAACACTACAATGA+TGG 0.417208 tig0016715:-416001 Msa1359690:CDS
CCATCATTGTAGTGTTTGAT+GGG 0.419117 tig0016715:+416001 None:intergenic
TGCATGGAAGGTTCCTTCTT+CGG 0.420616 tig0016715:-416531 Msa1359690:CDS
TACTTAGATGGTCTCCAACT+TGG 0.420901 tig0016715:+416468 None:intergenic
CCTTCACCAGCTGAAGTTGA+TGG 0.422615 tig0016715:-415833 Msa1359690:CDS
GCAAGGTGGTGGTGTATTTG+TGG 0.435276 tig0016715:-415759 Msa1359690:CDS
AAAAGTGAAAATTACTTAGA+TGG 0.435763 tig0016715:+416456 None:intergenic
ATTAGGATTAAGATTGGGAT+TGG 0.437592 tig0016715:-415656 Msa1359690:three_prime_UTR
AAAACAGTTGCACCACTTGT+TGG 0.440200 tig0016715:+415782 None:intergenic
GCAGCTAAGGATATCTTGCT+TGG 0.450579 tig0016715:-416566 Msa1359690:CDS
TACTACATCAGTGGAGAAAA+GGG 0.477152 tig0016715:-415941 Msa1359690:CDS
ATCTGATTCTCTCAACAAAT+GGG 0.481996 tig0016715:-416507 Msa1359690:CDS
TGTGGTTGTCATGAGTCTAA+GGG 0.500303 tig0016715:-415891 Msa1359690:CDS
GTTGCACCACTTGTTGGAGC+TGG 0.502974 tig0016715:+415788 None:intergenic
GTATTATTAGGATTAAGATT+GGG 0.509185 tig0016715:-415661 Msa1359690:three_prime_UTR
TCAAGTGTTCGTTTCCAAGT+TGG 0.513908 tig0016715:-416482 Msa1359690:CDS
AGAGAATCAGATTCCGAAGA+AGG 0.516269 tig0016715:+416518 None:intergenic
ACTTCAGCTGGTGAAGGTGC+TGG 0.517037 tig0016715:+415839 None:intergenic
CCATCAAACACTACAATGAT+GGG 0.517725 tig0016715:-416000 Msa1359690:CDS
GCTGAAGTTGATGGTCCAGC+TGG 0.527675 tig0016715:-415824 Msa1359690:CDS
GCTGGACCATCAACTTCAGC+TGG 0.530028 tig0016715:+415827 None:intergenic
TCAGTTTGGAAATATGAAGC+TGG 0.536642 tig0016715:-416082 Msa1359690:intron
GAAAAGGGTCATTGTGAGAA+GGG 0.553149 tig0016715:-415926 Msa1359690:CDS
GTGGTTGTCATGAGTCTAAG+GGG 0.573266 tig0016715:-415890 Msa1359690:CDS
CCATCAACTTCAGCTGGTGA+AGG 0.581807 tig0016715:+415833 None:intergenic
GGTGGTGTATTTGTGGCTGT+AGG 0.582095 tig0016715:-415752 Msa1359690:CDS
ATATTAAAATTTGAATGACA+AGG 0.592685 tig0016715:+415571 None:intergenic
AGAAAAGGGTCATTGTGAGA+AGG 0.594361 tig0016715:-415927 Msa1359690:CDS
GTTGCTCCAGCTCCAACAAG+TGG 0.607631 tig0016715:-415794 Msa1359690:CDS
AATATAATAATAATATCAGA+AGG 0.608251 tig0016715:+415499 None:intergenic
GCTAAGGATATCTTGCTTGG+TGG 0.617121 tig0016715:-416563 Msa1359690:CDS
GGTCCATACTACTACATCAG+TGG 0.620422 tig0016715:-415950 Msa1359690:CDS
TGGCAAAACTGATGCATGGA+AGG 0.623442 tig0016715:-416543 Msa1359690:CDS
TGGTTGTCATGAGTCTAAGG+GGG 0.630347 tig0016715:-415889 Msa1359690:CDS
TAGGAGTGTTTGTTGCCATG+TGG 0.640277 tig0016715:-415733 Msa1359690:CDS
TTGGTGGCAAAACTGATGCA+TGG 0.676457 tig0016715:-416547 Msa1359690:CDS
TTCAAATCAGAAAAGCCACA+TGG 0.691376 tig0016715:+415718 None:intergenic
GGTTGTCATGAGTCTAAGGG+GGG 0.691450 tig0016715:-415888 Msa1359690:CDS
GTTGTCATGAGTCTAAGGGG+GGG 0.700416 tig0016715:-415887 Msa1359690:CDS
GAAGGGTCAGAAGCTTACTG+TGG 0.745278 tig0016715:-415909 Msa1359690:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTCATAATATTAGTATTATT+AGG - tig0016715:416530-416549 Msa1359690:CDS 10.0%
!! AATATAATAATAATATCAGA+AGG + tig0016715:416707-416726 None:intergenic 10.0%
!! TTCATAATATTAGTATTATT+AGG - tig0016715:416530-416549 Msa1359690:CDS 10.0%
!! AATATAATAATAATATCAGA+AGG + tig0016715:416707-416726 None:intergenic 10.0%
!! ATTGAATTTAGTGATAAAAA+AGG + tig0016715:415786-415805 None:intergenic 15.0%
!!! TGAATTTTTACTGATAATTA+AGG + tig0016715:415826-415845 None:intergenic 15.0%
!!! ACAATAAAGAAACAATTTTA+AGG + tig0016715:415890-415909 None:intergenic 15.0%
!!! AATATAAAAAAATTGGGTTT+TGG + tig0016715:415975-415994 None:intergenic 15.0%
!! CATCACATAAAAATAAAAAT+TGG + tig0016715:416055-416074 None:intergenic 15.0%
!! ATATTAAAATTTGAATGACA+AGG + tig0016715:416635-416654 None:intergenic 15.0%
!!! AAATTCCATTATATATGTTT+TGG - tig0016715:416655-416674 Msa1359690:exon 15.0%
!! ATTGAATTTAGTGATAAAAA+AGG + tig0016715:415786-415805 None:intergenic 15.0%
!!! TGAATTTTTACTGATAATTA+AGG + tig0016715:415826-415845 None:intergenic 15.0%
!!! ACAATAAAGAAACAATTTTA+AGG + tig0016715:415890-415909 None:intergenic 15.0%
!!! AATATAAAAAAATTGGGTTT+TGG + tig0016715:415975-415994 None:intergenic 15.0%
!! CATCACATAAAAATAAAAAT+TGG + tig0016715:416055-416074 None:intergenic 15.0%
!! ATATTAAAATTTGAATGACA+AGG + tig0016715:416635-416654 None:intergenic 15.0%
!!! AAATTCCATTATATATGTTT+TGG - tig0016715:416655-416674 Msa1359690:exon 15.0%
!! AAAAGTGAAAATTACTTAGA+TGG + tig0016715:415750-415769 None:intergenic 20.0%
!!! TTTTTACATTTTCATCATCT+TGG - tig0016715:415938-415957 Msa1359690:CDS 20.0%
!! GGTGGAAATATAAAAAAATT+GGG + tig0016715:415981-416000 None:intergenic 20.0%
!! TGGTGGAAATATAAAAAAAT+TGG + tig0016715:415982-416001 None:intergenic 20.0%
!! TGAATATCCAAACTAAAATA+AGG + tig0016715:416514-416533 None:intergenic 20.0%
!! AGTATTATTAGGATTAAGAT+TGG - tig0016715:416541-416560 Msa1359690:CDS 20.0%
!! GTATTATTAGGATTAAGATT+GGG - tig0016715:416542-416561 Msa1359690:CDS 20.0%
!!! ATTATATATGTTTTGGTCTT+GGG - tig0016715:416662-416681 Msa1359690:five_prime_UTR 20.0%
!! AAAAGTGAAAATTACTTAGA+TGG + tig0016715:415750-415769 None:intergenic 20.0%
!!! TTTTTACATTTTCATCATCT+TGG - tig0016715:415938-415957 Msa1359690:CDS 20.0%
!! GGTGGAAATATAAAAAAATT+GGG + tig0016715:415981-416000 None:intergenic 20.0%
!! TGGTGGAAATATAAAAAAAT+TGG + tig0016715:415982-416001 None:intergenic 20.0%
!! TGAATATCCAAACTAAAATA+AGG + tig0016715:416514-416533 None:intergenic 20.0%
!! AGTATTATTAGGATTAAGAT+TGG - tig0016715:416541-416560 Msa1359690:CDS 20.0%
!! GTATTATTAGGATTAAGATT+GGG - tig0016715:416542-416561 Msa1359690:CDS 20.0%
!!! ATTATATATGTTTTGGTCTT+GGG - tig0016715:416662-416681 Msa1359690:five_prime_UTR 20.0%
! TCTTAAAGATGCAGAAATTA+TGG + tig0016715:415496-415515 None:intergenic 25.0%
!! TTTTTATATTTCCACCATCT+TGG - tig0016715:415985-416004 Msa1359690:CDS 25.0%
! TTGAAAACAAAATACCAAGA+TGG + tig0016715:416002-416021 None:intergenic 25.0%
! ATGAACAATAAAGTAGTTAG+TGG + tig0016715:416091-416110 None:intergenic 25.0%
!!! TCATATTTTTGTTCTCAGTT+TGG - tig0016715:416107-416126 Msa1359690:intron 25.0%
!!! TGAATTGCCTTATTTTAGTT+TGG - tig0016715:416504-416523 Msa1359690:CDS 25.0%
! CAAGACCAAAACATATATAA+TGG + tig0016715:416663-416682 None:intergenic 25.0%
!!! CATTATATATGTTTTGGTCT+TGG - tig0016715:416661-416680 Msa1359690:five_prime_UTR 25.0%
! TCTTAAAGATGCAGAAATTA+TGG + tig0016715:415496-415515 None:intergenic 25.0%
!! TTTTTATATTTCCACCATCT+TGG - tig0016715:415985-416004 Msa1359690:CDS 25.0%
! TTGAAAACAAAATACCAAGA+TGG + tig0016715:416002-416021 None:intergenic 25.0%
! ATGAACAATAAAGTAGTTAG+TGG + tig0016715:416091-416110 None:intergenic 25.0%
!!! TCATATTTTTGTTCTCAGTT+TGG - tig0016715:416107-416126 Msa1359690:intron 25.0%
!!! TGAATTGCCTTATTTTAGTT+TGG - tig0016715:416504-416523 Msa1359690:CDS 25.0%
! CAAGACCAAAACATATATAA+TGG + tig0016715:416663-416682 None:intergenic 25.0%
!!! CATTATATATGTTTTGGTCT+TGG - tig0016715:416661-416680 Msa1359690:five_prime_UTR 25.0%
! GCAGAAATTATGGATGATTT+TGG + tig0016715:415486-415505 None:intergenic 30.0%
CAACATTTGCAGAAAAACAA+TGG - tig0016715:415549-415568 Msa1359690:three_prime_UTR 30.0%
! TTCATCATCTTGTTCTCTTT+TGG - tig0016715:415585-415604 Msa1359690:three_prime_UTR 30.0%
AATCTGATTCTCTCAACAAA+TGG - tig0016715:415695-415714 Msa1359690:three_prime_UTR 30.0%
ATCTGATTCTCTCAACAAAT+GGG - tig0016715:415696-415715 Msa1359690:three_prime_UTR 30.0%
AAAACAAAATACCAAGATGG+TGG + tig0016715:415999-416018 None:intergenic 30.0%
AAAGTGAGATTTGATCATTC+TGG - tig0016715:416232-416251 Msa1359690:intron 30.0%
ATTAGGATTAAGATTGGGAT+TGG - tig0016715:416547-416566 Msa1359690:CDS 30.0%
! GCAGAAATTATGGATGATTT+TGG + tig0016715:415486-415505 None:intergenic 30.0%
CAACATTTGCAGAAAAACAA+TGG - tig0016715:415549-415568 Msa1359690:three_prime_UTR 30.0%
! TTCATCATCTTGTTCTCTTT+TGG - tig0016715:415585-415604 Msa1359690:three_prime_UTR 30.0%
AATCTGATTCTCTCAACAAA+TGG - tig0016715:415695-415714 Msa1359690:three_prime_UTR 30.0%
ATCTGATTCTCTCAACAAAT+GGG - tig0016715:415696-415715 Msa1359690:three_prime_UTR 30.0%
AAAACAAAATACCAAGATGG+TGG + tig0016715:415999-416018 None:intergenic 30.0%
AAAGTGAGATTTGATCATTC+TGG - tig0016715:416232-416251 Msa1359690:intron 30.0%
ATTAGGATTAAGATTGGGAT+TGG - tig0016715:416547-416566 Msa1359690:CDS 30.0%
ATTTGCAGAAAAACAATGGC+TGG - tig0016715:415553-415572 Msa1359690:three_prime_UTR 35.0%
!! TTGGTTCTTGTTGTTCTCTT+TGG - tig0016715:415604-415623 Msa1359690:three_prime_UTR 35.0%
TCAGTTTGGAAATATGAAGC+TGG - tig0016715:416121-416140 Msa1359690:intron 35.0%
! TTCTGTTTTGCAAGTGAGTA+AGG - tig0016715:416150-416169 Msa1359690:intron 35.0%
CCATCATTGTAGTGTTTGAT+GGG + tig0016715:416205-416224 None:intergenic 35.0%
CCATCAAACACTACAATGAT+GGG - tig0016715:416203-416222 Msa1359690:intron 35.0%
TACTACATCAGTGGAGAAAA+GGG - tig0016715:416262-416281 Msa1359690:intron 35.0%
TTCAAATCAGAAAAGCCACA+TGG + tig0016715:416488-416507 None:intergenic 35.0%
ATTTGCAGAAAAACAATGGC+TGG - tig0016715:415553-415572 Msa1359690:three_prime_UTR 35.0%
!! TTGGTTCTTGTTGTTCTCTT+TGG - tig0016715:415604-415623 Msa1359690:three_prime_UTR 35.0%
TCAGTTTGGAAATATGAAGC+TGG - tig0016715:416121-416140 Msa1359690:intron 35.0%
! TTCTGTTTTGCAAGTGAGTA+AGG - tig0016715:416150-416169 Msa1359690:intron 35.0%
CCATCATTGTAGTGTTTGAT+GGG + tig0016715:416205-416224 None:intergenic 35.0%
CCATCAAACACTACAATGAT+GGG - tig0016715:416203-416222 Msa1359690:intron 35.0%
TACTACATCAGTGGAGAAAA+GGG - tig0016715:416262-416281 Msa1359690:intron 35.0%
TTCAAATCAGAAAAGCCACA+TGG + tig0016715:416488-416507 None:intergenic 35.0%
AGAGAATCAGATTCCGAAGA+AGG + tig0016715:415688-415707 None:intergenic 40.0%
TCAAGTGTTCGTTTCCAAGT+TGG - tig0016715:415721-415740 Msa1359690:exon 40.0%
TACTTAGATGGTCTCCAACT+TGG + tig0016715:415738-415757 None:intergenic 40.0%
!!! GTAGTGTTTGATGGGTTTTG+AGG + tig0016715:416197-416216 None:intergenic 40.0%
CCCATCAAACACTACAATGA+TGG - tig0016715:416202-416221 Msa1359690:intron 40.0%
CCCATCATTGTAGTGTTTGA+TGG + tig0016715:416206-416225 None:intergenic 40.0%
TCTCCACTGATGTAGTAGTA+TGG + tig0016715:416259-416278 None:intergenic 40.0%
CTACTACATCAGTGGAGAAA+AGG - tig0016715:416261-416280 Msa1359690:intron 40.0%
AGAAAAGGGTCATTGTGAGA+AGG - tig0016715:416276-416295 Msa1359690:intron 40.0%
GAAAAGGGTCATTGTGAGAA+GGG - tig0016715:416277-416296 Msa1359690:intron 40.0%
TGTGGTTGTCATGAGTCTAA+GGG - tig0016715:416312-416331 Msa1359690:intron 40.0%
GCTGGTGAAAAAGCAACAAT+GGG + tig0016715:416349-416368 None:intergenic 40.0%
TGCTGGTGAAAAAGCAACAA+TGG + tig0016715:416350-416369 None:intergenic 40.0%
AAAACAGTTGCACCACTTGT+TGG + tig0016715:416424-416443 None:intergenic 40.0%
AGAGAATCAGATTCCGAAGA+AGG + tig0016715:415688-415707 None:intergenic 40.0%
TCAAGTGTTCGTTTCCAAGT+TGG - tig0016715:415721-415740 Msa1359690:exon 40.0%
TACTTAGATGGTCTCCAACT+TGG + tig0016715:415738-415757 None:intergenic 40.0%
!!! GTAGTGTTTGATGGGTTTTG+AGG + tig0016715:416197-416216 None:intergenic 40.0%
CCCATCAAACACTACAATGA+TGG - tig0016715:416202-416221 Msa1359690:intron 40.0%
CCCATCATTGTAGTGTTTGA+TGG + tig0016715:416206-416225 None:intergenic 40.0%
TCTCCACTGATGTAGTAGTA+TGG + tig0016715:416259-416278 None:intergenic 40.0%
CTACTACATCAGTGGAGAAA+AGG - tig0016715:416261-416280 Msa1359690:intron 40.0%
AGAAAAGGGTCATTGTGAGA+AGG - tig0016715:416276-416295 Msa1359690:intron 40.0%
GAAAAGGGTCATTGTGAGAA+GGG - tig0016715:416277-416296 Msa1359690:intron 40.0%
TGTGGTTGTCATGAGTCTAA+GGG - tig0016715:416312-416331 Msa1359690:intron 40.0%
GCTGGTGAAAAAGCAACAAT+GGG + tig0016715:416349-416368 None:intergenic 40.0%
TGCTGGTGAAAAAGCAACAA+TGG + tig0016715:416350-416369 None:intergenic 40.0%
AAAACAGTTGCACCACTTGT+TGG + tig0016715:416424-416443 None:intergenic 40.0%
! TGGTTGTGCTTTTGCAGCTA+AGG - tig0016715:415624-415643 Msa1359690:three_prime_UTR 45.0%
GCAGCTAAGGATATCTTGCT+TGG - tig0016715:415637-415656 Msa1359690:three_prime_UTR 45.0%
GCTAAGGATATCTTGCTTGG+TGG - tig0016715:415640-415659 Msa1359690:three_prime_UTR 45.0%
! TTGGTGGCAAAACTGATGCA+TGG - tig0016715:415656-415675 Msa1359690:three_prime_UTR 45.0%
TGGCAAAACTGATGCATGGA+AGG - tig0016715:415660-415679 Msa1359690:three_prime_UTR 45.0%
TGCATGGAAGGTTCCTTCTT+CGG - tig0016715:415672-415691 Msa1359690:three_prime_UTR 45.0%
GGTCCATACTACTACATCAG+TGG - tig0016715:416253-416272 Msa1359690:intron 45.0%
CTGTGGTTGTCATGAGTCTA+AGG - tig0016715:416311-416330 Msa1359690:intron 45.0%
GTGGTTGTCATGAGTCTAAG+GGG - tig0016715:416313-416332 Msa1359690:intron 45.0%
TGGTTGTCATGAGTCTAAGG+GGG - tig0016715:416314-416333 Msa1359690:intron 45.0%
! AGTGGTGCAACTGTTTTGCA+AGG - tig0016715:416427-416446 Msa1359690:intron 45.0%
!! TAGGAGTGTTTGTTGCCATG+TGG - tig0016715:416470-416489 Msa1359690:intron 45.0%
! TGGTTGTGCTTTTGCAGCTA+AGG - tig0016715:415624-415643 Msa1359690:three_prime_UTR 45.0%
GCAGCTAAGGATATCTTGCT+TGG - tig0016715:415637-415656 Msa1359690:three_prime_UTR 45.0%
GCTAAGGATATCTTGCTTGG+TGG - tig0016715:415640-415659 Msa1359690:three_prime_UTR 45.0%
! TTGGTGGCAAAACTGATGCA+TGG - tig0016715:415656-415675 Msa1359690:three_prime_UTR 45.0%
TGGCAAAACTGATGCATGGA+AGG - tig0016715:415660-415679 Msa1359690:three_prime_UTR 45.0%
TGCATGGAAGGTTCCTTCTT+CGG - tig0016715:415672-415691 Msa1359690:three_prime_UTR 45.0%
GGTCCATACTACTACATCAG+TGG - tig0016715:416253-416272 Msa1359690:intron 45.0%
CTGTGGTTGTCATGAGTCTA+AGG - tig0016715:416311-416330 Msa1359690:intron 45.0%
GTGGTTGTCATGAGTCTAAG+GGG - tig0016715:416313-416332 Msa1359690:intron 45.0%
TGGTTGTCATGAGTCTAAGG+GGG - tig0016715:416314-416333 Msa1359690:intron 45.0%
! AGTGGTGCAACTGTTTTGCA+AGG - tig0016715:416427-416446 Msa1359690:intron 45.0%
!! TAGGAGTGTTTGTTGCCATG+TGG - tig0016715:416470-416489 Msa1359690:intron 45.0%
GAAGGGTCAGAAGCTTACTG+TGG - tig0016715:416294-416313 Msa1359690:intron 50.0%
GGTTGTCATGAGTCTAAGGG+GGG - tig0016715:416315-416334 Msa1359690:intron 50.0%
GTTGTCATGAGTCTAAGGGG+GGG - tig0016715:416316-416335 Msa1359690:intron 50.0%
CCATCAACTTCAGCTGGTGA+AGG + tig0016715:416373-416392 None:intergenic 50.0%
CCTTCACCAGCTGAAGTTGA+TGG - tig0016715:416370-416389 Msa1359690:intron 50.0%
! GGTGCAACTGTTTTGCAAGG+TGG - tig0016715:416430-416449 Msa1359690:intron 50.0%
! GCAACTGTTTTGCAAGGTGG+TGG - tig0016715:416433-416452 Msa1359690:intron 50.0%
! GCAAGGTGGTGGTGTATTTG+TGG - tig0016715:416444-416463 Msa1359690:intron 50.0%
GGTGGTGTATTTGTGGCTGT+AGG - tig0016715:416451-416470 Msa1359690:intron 50.0%
GAAGGGTCAGAAGCTTACTG+TGG - tig0016715:416294-416313 Msa1359690:intron 50.0%
GGTTGTCATGAGTCTAAGGG+GGG - tig0016715:416315-416334 Msa1359690:intron 50.0%
GTTGTCATGAGTCTAAGGGG+GGG - tig0016715:416316-416335 Msa1359690:intron 50.0%
CCATCAACTTCAGCTGGTGA+AGG + tig0016715:416373-416392 None:intergenic 50.0%
CCTTCACCAGCTGAAGTTGA+TGG - tig0016715:416370-416389 Msa1359690:intron 50.0%
! GGTGCAACTGTTTTGCAAGG+TGG - tig0016715:416430-416449 Msa1359690:intron 50.0%
! GCAACTGTTTTGCAAGGTGG+TGG - tig0016715:416433-416452 Msa1359690:intron 50.0%
! GCAAGGTGGTGGTGTATTTG+TGG - tig0016715:416444-416463 Msa1359690:intron 50.0%
GGTGGTGTATTTGTGGCTGT+AGG - tig0016715:416451-416470 Msa1359690:intron 50.0%
TGAGTCTAAGGGGGGGAAGT+AGG - tig0016715:416323-416342 Msa1359690:intron 55.0%
! ACTTCAGCTGGTGAAGGTGC+TGG + tig0016715:416367-416386 None:intergenic 55.0%
GCTGGACCATCAACTTCAGC+TGG + tig0016715:416379-416398 None:intergenic 55.0%
!! GCTGAAGTTGATGGTCCAGC+TGG - tig0016715:416379-416398 Msa1359690:intron 55.0%
GTTGCTCCAGCTCCAACAAG+TGG - tig0016715:416409-416428 Msa1359690:intron 55.0%
! GTTGCACCACTTGTTGGAGC+TGG + tig0016715:416418-416437 None:intergenic 55.0%
TGAGTCTAAGGGGGGGAAGT+AGG - tig0016715:416323-416342 Msa1359690:intron 55.0%
! ACTTCAGCTGGTGAAGGTGC+TGG + tig0016715:416367-416386 None:intergenic 55.0%
GCTGGACCATCAACTTCAGC+TGG + tig0016715:416379-416398 None:intergenic 55.0%
!! GCTGAAGTTGATGGTCCAGC+TGG - tig0016715:416379-416398 Msa1359690:intron 55.0%
GTTGCTCCAGCTCCAACAAG+TGG - tig0016715:416409-416428 Msa1359690:intron 55.0%
! GTTGCACCACTTGTTGGAGC+TGG + tig0016715:416418-416437 None:intergenic 55.0%
GGAGCAACAGCTGAGCCAGC+TGG + tig0016715:416397-416416 None:intergenic 65.0%
GGAGCAACAGCTGAGCCAGC+TGG + tig0016715:416397-416416 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
tig0016715 gene 415474 416751 415474 ID=Msa1359690;Name=Msa1359690
tig0016715 mRNA 415474 416751 415474 ID=Msa1359690-mRNA-1;Parent=Msa1359690;Name=Msa1359690-mRNA-1;_AED=0.00;_eAED=0.00;_QI=94|1|1|1|1|1|2|250|187
tig0016715 exon 415474 416100 415474 ID=Msa1359690-mRNA-1:exon:11500;Parent=Msa1359690-mRNA-1
tig0016715 exon 416471 416751 416471 ID=Msa1359690-mRNA-1:exon:11499;Parent=Msa1359690-mRNA-1
tig0016715 five_prime_UTR 416658 416751 416658 ID=Msa1359690-mRNA-1:five_prime_utr;Parent=Msa1359690-mRNA-1
tig0016715 CDS 416471 416657 416471 ID=Msa1359690-mRNA-1:cds;Parent=Msa1359690-mRNA-1
tig0016715 CDS 415724 416100 415724 ID=Msa1359690-mRNA-1:cds;Parent=Msa1359690-mRNA-1
tig0016715 three_prime_UTR 415474 415723 415474 ID=Msa1359690-mRNA-1:three_prime_utr;Parent=Msa1359690-mRNA-1
Gene Sequence

>Msa1359690

ATGGCTGGTTCGTCTTCTTCATCATCTTGTTCTCTTTTGGTTCTTGTTGTTCTCTTTGGTTGTGCTTTTGCAGCTAAGGATATCTTGCTTGGTGGCAAAACTGATGCATGGAAGGTTCCTTCTTCGGAATCTGATTCTCTCAACAAATGGGCTTCAAGTGTTCGTTTCCAAGTTGGAGACCATCTAATTTGGAAATATGAAGCTGGAAAAGATTCTGTTTTGCAAGTGAGTAAGGAAGATTATGATAGCTGCAACACCTCAAAACCCATCAAACACTACAATGATGGGAACACTAAAGTGAGATTTGATCATTCTGGTCCATACTACTACATCAGTGGAGAAAAGGGTCATTGTGAGAAGGGTCAGAAGCTTACTGTGGTTGTCATGAGTCTAAGGGGGGGAAGTAGGCCCATTGTTGCTTTTTCACCAGCACCTTCACCAGCTGAAGTTGATGGTCCAGCTGGCTCAGCTGTTGCTCCAGCTCCAACAAGTGGTGCAACTGTTTTGCAAGGTGGTGGTGTATTTGTGGCTGTAGGAGTGTTTGTTGCCATGTGGCTTTTCTGA

Protein sequence

>Msa1359690

MAGSSSSSSCSLLVLVVLFGCAFAAKDILLGGKTDAWKVPSSESDSLNKWASSVRFQVGDHLIWKYEAGKDSVLQVSKEDYDSCNTSKPIKHYNDGNTKVRFDHSGPYYYISGEKGHCEKGQKLTVVVMSLRGGSRPIVAFSPAPSPAEVDGPAGSAVAPAPTSGATVLQGGGVFVAVGVFVAMWLF*