AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0213610


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0213610 MtrunA17_Chr2g0313891 98.230 113 2 0 1 113 1 113 5.63e-82 235
Msa0213610 MtrunA17_Chr8g0378371 41.880 117 59 4 1 112 1 113 4.04e-23 86.3
Msa0213610 MtrunA17_Chr8g0381081 42.268 97 53 2 19 113 47 142 3.61e-22 85.5
Msa0213610 MtrunA17_Chr7g0223961 48.193 83 42 1 29 110 364 446 2.12e-21 87.4
Msa0213610 MtrunA17_Chr8g0378381 44.565 92 50 1 22 112 24 115 7.97e-21 80.5
Msa0213610 MtrunA17_Chr1g0154991 40.449 89 52 1 25 112 15 103 7.96e-19 75.1
Msa0213610 MtrunA17_Chr1g0193131 45.161 93 48 3 17 108 408 498 5.31e-18 78.2
Msa0213610 MtrunA17_Chr6g0487261 41.758 91 49 2 25 112 365 454 7.05e-18 77.8
Msa0213610 MtrunA17_Chr4g0043511 39.535 86 51 1 28 112 418 503 1.26e-17 77.0
Msa0213610 MtrunA17_Chr3g0144531 41.176 85 49 1 30 113 371 455 2.65e-17 75.9
Msa0213610 MtrunA17_Chr8g0378401 40.860 93 54 1 22 113 24 116 2.99e-17 71.6
Msa0213610 MtrunA17_Chr3g0121271 37.374 99 60 1 17 113 349 447 4.37e-17 75.5
Msa0213610 MtrunA17_Chr1g0161011 36.634 101 60 2 17 113 346 446 6.46e-17 75.1
Msa0213610 MtrunA17_Chr8g0378361 36.607 112 63 3 5 112 6 113 8.25e-17 72.0
Msa0213610 MtrunA17_Chr2g0306311 43.529 85 46 2 27 110 396 479 9.50e-17 74.3
Msa0213610 MtrunA17_Chr4g0034901 40.000 85 49 1 30 112 375 459 1.07e-16 74.3
Msa0213610 MtrunA17_Chr7g0271411 45.882 85 43 2 30 112 160 243 1.22e-16 73.6
Msa0213610 MtrunA17_Chr1g0177171 40.206 97 55 2 17 110 392 488 1.38e-16 73.9
Msa0213610 MtrunA17_Chr5g0434591 35.000 100 61 2 17 112 345 444 1.56e-16 73.9
Msa0213610 MtrunA17_Chr8g0389741 35.294 102 63 2 13 112 352 452 2.14e-16 73.6
Msa0213610 MtrunA17_Chr4g0075031 39.080 87 51 1 28 112 380 466 5.59e-16 72.4
Msa0213610 MtrunA17_Chr3g0110371 36.000 100 60 2 17 112 346 445 8.90e-16 71.6
Msa0213610 MtrunA17_Chr5g0447651 32.432 111 67 2 4 112 10 114 4.69e-15 65.9
Msa0213610 MtrunA17_Chr5g0443331 37.895 95 56 2 20 112 98 191 5.59e-15 68.6
Msa0213610 MtrunA17_Chr4g0061401 41.667 84 47 2 30 112 24 106 1.14e-14 67.0
Msa0213610 MtrunA17_Chr3g0096451 37.363 91 54 2 24 112 106 195 1.37e-14 67.4
Msa0213610 MtrunA17_Chr4g0040911 37.500 88 53 1 27 112 34 121 1.72e-14 65.9
Msa0213610 MtrunA17_Chr5g0401301 39.326 89 51 1 27 112 326 414 5.22e-14 66.6
Msa0213610 MtrunA17_Chr3g0120401 36.905 84 52 1 30 112 157 240 8.36e-14 65.1
Msa0213610 MtrunA17_Chr8g0339191 36.264 91 48 3 28 112 372 458 1.21e-13 65.5
Msa0213610 MtrunA17_Chr1g0213651 38.095 84 51 1 30 112 276 359 2.30e-13 64.7
Msa0213610 MtrunA17_Chr2g0304061 42.353 85 47 2 30 113 158 241 9.57e-13 62.8
Msa0213610 MtrunA17_Chr5g0439251 37.500 80 48 1 29 106 381 460 9.91e-13 63.2
Msa0213610 MtrunA17_Chr4g0062771 37.931 87 52 2 27 112 371 456 9.94e-13 63.2
Msa0213610 MtrunA17_Chr8g0378621 36.538 104 62 2 13 112 345 448 1.25e-12 62.8
Msa0213610 MtrunA17_Chr4g0043151 34.545 110 61 5 6 112 4 105 1.02e-11 58.9
Msa0213610 MtrunA17_Chr2g0290821 34.940 83 53 1 30 112 369 450 5.99e-11 57.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0213610 AT1G78520.1 63.158 114 40 2 1 112 1 114 1.39e-47 148
Msa0213610 AT2G43670.1 50.427 117 53 2 1 112 1 117 2.42e-37 122
Msa0213610 AT2G43660.2 45.378 119 58 3 1 112 1 119 8.87e-29 101
Msa0213610 AT2G43660.1 44.915 118 59 2 1 112 1 118 3.41e-28 99.8
Msa0213610 AT3G28250.1 53.247 77 36 0 30 106 3 79 7.17e-27 96.3
Msa0213610 AT4G09462.1 43.590 117 58 3 1 113 1 113 3.65e-26 94.4
Msa0213610 AT4G09464.1 43.478 115 63 2 1 113 1 115 8.83e-26 93.6
Msa0213610 AT4G09467.1 43.478 115 63 2 1 113 1 115 8.83e-26 93.6
Msa0213610 AT4G09465.1 43.478 115 63 2 1 113 1 115 1.51e-25 92.8
Msa0213610 AT5G53600.1 41.935 93 54 0 20 112 19 111 1.07e-23 88.2
Msa0213610 AT4G09466.1 41.739 115 65 2 1 113 1 115 1.24e-23 88.2
Msa0213610 AT4G09090.1 42.105 114 64 2 1 112 1 114 6.56e-23 86.3
Msa0213610 AT1G66852.1 42.045 88 48 2 28 113 24 110 4.11e-21 81.3
Msa0213610 AT1G66870.1 41.379 87 49 1 28 112 24 110 6.45e-21 80.9
Msa0213610 AT1G66870.2 41.379 87 49 1 28 112 51 137 1.02e-20 81.3
Msa0213610 AT1G09460.1 48.387 93 46 2 20 112 128 218 2.36e-20 84.0
Msa0213610 AT4G16165.1 40.909 88 50 1 28 113 24 111 1.04e-19 77.8
Msa0213610 AT4G05430.1 38.542 96 56 2 19 112 13 107 1.34e-19 78.6
Msa0213610 AT4G05430.3 38.542 96 56 2 19 112 38 132 1.97e-19 78.6
Msa0213610 AT5G53610.1 38.614 101 62 0 10 110 8 108 9.82e-19 75.5
Msa0213610 AT5G63225.1 42.391 92 52 1 22 112 17 108 1.04e-18 75.5
Msa0213610 AT1G66855.1 34.783 115 68 2 1 113 2 111 4.22e-18 73.9
Msa0213610 AT2G05790.1 42.708 96 52 2 17 110 372 466 1.45e-17 77.0
Msa0213610 AT5G63240.1 36.667 90 53 1 27 112 37 126 2.50e-17 72.4
Msa0213610 AT4G29360.1 39.080 87 51 1 28 112 389 475 3.36e-17 76.3
Msa0213610 AT4G29360.2 39.080 87 51 1 28 112 399 485 3.53e-17 76.3
Msa0213610 AT1G11820.2 36.792 106 63 2 11 112 360 465 6.63e-17 75.1
Msa0213610 AT5G24318.1 37.079 89 55 1 25 112 367 455 7.84e-17 75.1
Msa0213610 AT4G34480.3 36.905 84 52 1 30 112 253 336 1.38e-16 74.3
Msa0213610 AT4G34480.1 36.905 84 52 1 30 112 364 447 1.68e-16 73.9
Msa0213610 AT5G24318.3 38.372 86 52 1 28 112 231 316 2.87e-16 72.8
Msa0213610 AT2G01630.1 35.000 100 61 2 17 112 345 444 2.98e-16 73.6
Msa0213610 AT4G05430.2 36.667 90 54 2 19 106 38 126 5.39e-16 68.9
Msa0213610 AT2G39640.1 37.000 100 59 2 15 110 341 440 6.53e-16 72.4
Msa0213610 AT2G39640.1 37.349 83 51 1 30 111 460 542 9.92e-16 72.0
Msa0213610 AT5G63230.1 39.535 86 51 1 28 112 24 109 7.65e-16 68.2
Msa0213610 AT5G55180.1 40.000 85 49 1 28 110 370 454 9.74e-16 72.0
Msa0213610 AT3G13560.4 38.889 90 53 1 25 112 357 446 1.05e-15 72.0
Msa0213610 AT3G13560.1 38.889 90 53 1 25 112 357 446 1.05e-15 72.0
Msa0213610 AT3G13560.2 38.889 90 53 1 25 112 357 446 1.05e-15 72.0
Msa0213610 AT3G13560.5 38.889 90 53 1 25 112 357 446 1.05e-15 72.0
Msa0213610 AT3G13560.3 38.889 90 53 1 25 112 357 446 1.05e-15 72.0
Msa0213610 AT3G58100.1 30.841 107 69 2 8 112 22 125 2.75e-15 68.2
Msa0213610 AT1G18650.2 33.628 113 65 2 1 112 1 104 5.16e-15 66.2
Msa0213610 AT1G66250.1 34.831 89 56 1 27 113 365 453 6.84e-15 69.7
Msa0213610 AT2G29735.1 36.036 111 68 2 5 112 6 116 9.73e-15 65.5
Msa0213610 AT3G58100.2 30.841 107 69 2 8 112 98 201 9.79e-15 68.2
Msa0213610 AT1G18650.1 33.628 113 65 2 1 112 1 104 1.29e-14 66.6
Msa0213610 AT3G55430.1 38.095 84 51 1 30 112 366 449 1.71e-14 68.6
Msa0213610 AT2G01630.3 35.106 94 57 2 17 106 345 438 2.99e-14 67.8
Msa0213610 AT2G30933.1 34.314 102 64 2 13 112 65 165 5.70e-14 65.5
Msa0213610 AT1G11820.3 36.000 100 60 2 11 106 360 459 1.58e-13 65.5
Msa0213610 AT1G29380.3 37.931 87 49 3 30 113 148 232 1.99e-13 64.7
Msa0213610 AT2G16230.1 34.524 84 54 1 30 112 366 449 2.11e-13 65.5
Msa0213610 AT4G26830.2 39.286 84 49 1 29 110 370 453 2.20e-13 65.1
Msa0213610 AT4G26830.1 39.286 84 49 1 29 110 366 449 2.24e-13 65.1
Msa0213610 AT5G55180.2 39.506 81 47 1 28 106 370 450 2.39e-13 65.1
Msa0213610 AT1G79480.1 36.905 84 52 1 30 112 311 394 2.46e-13 65.1
Msa0213610 AT1G79480.2 36.905 84 52 1 30 112 310 393 2.63e-13 65.1
Msa0213610 AT1G29380.1 38.372 86 48 3 30 112 148 231 2.82e-13 64.7
Msa0213610 AT5G67460.1 35.556 90 56 1 25 112 288 377 3.19e-13 64.7
Msa0213610 AT5G63250.1 36.782 87 51 1 30 112 42 128 3.95e-13 61.6
Msa0213610 AT5G35740.1 34.091 88 55 2 28 112 28 115 6.30e-13 60.8
Msa0213610 AT5G64790.1 34.483 87 55 2 27 112 366 451 6.61e-13 63.9
Msa0213610 AT4G13600.1 36.905 84 52 1 30 112 61 144 1.19e-12 62.0
Msa0213610 AT5G56590.1 35.294 85 53 1 30 112 369 453 1.28e-12 63.2
Msa0213610 AT5G24318.2 33.735 83 54 1 25 106 367 449 1.38e-12 62.8
Msa0213610 AT2G30933.2 34.375 96 60 2 13 106 65 159 3.02e-12 59.7
Msa0213610 AT2G30933.3 34.375 96 60 2 13 106 65 159 3.02e-12 59.7
Msa0213610 AT4G17180.1 38.554 83 50 1 30 112 359 440 3.98e-12 61.6
Msa0213610 AT3G24330.1 39.286 84 49 2 28 110 380 462 7.68e-12 60.8
Msa0213610 AT1G29380.4 38.750 80 44 3 30 106 148 225 9.59e-12 59.7
Msa0213610 AT1G29380.2 38.750 80 44 3 30 106 148 225 9.59e-12 59.7
Msa0213610 AT2G42930.1 35.106 94 59 2 14 106 24 116 1.25e-11 57.8
Msa0213610 AT5G67460.2 35.714 84 52 1 25 106 288 371 4.60e-11 58.5
Msa0213610 AT5G61130.1 31.765 85 57 1 29 112 20 104 9.46e-11 56.6

Find 38 sgRNAs with CRISPR-Local

Find 206 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGTATGCTATTTAATTTAAT+TGG 0.086739 2_1:-56731567 Msa0213610:three_prime_UTR
ATCAGTATCTTAACATTAAT+TGG 0.154882 2_1:+56731408 None:intergenic
CTCAAAATGGTTCAAAGTTA+AGG 0.254271 2_1:+56731484 None:intergenic
GGGAATATGATCATGGTTAA+TGG 0.289090 2_1:-56732321 Msa0213610:CDS
TAATTGGTGCAAAATTTAGA+TGG 0.330321 2_1:+56731424 None:intergenic
GGTTGTCATTTCAAACCATA+TGG 0.351784 2_1:-56731545 Msa0213610:three_prime_UTR
GTATGCTATTTAATTTAATT+GGG 0.370890 2_1:-56731566 Msa0213610:three_prime_UTR
ATTTCAAACCATATGGATAT+AGG 0.376847 2_1:-56731538 Msa0213610:three_prime_UTR
AGATCGATAATAGAGATTCA+TGG 0.408516 2_1:+56732049 None:intergenic
GGAATATGATCATGGTTAAT+GGG 0.423180 2_1:-56732320 Msa0213610:CDS
ACTGCATTTATGCATAGAAA+TGG 0.427694 2_1:-56731629 Msa0213610:exon
TCAAAATGGTTCAAAGTTAA+GGG 0.430023 2_1:+56731485 None:intergenic
TAGTGGTAGATTAGAGTGTG+TGG 0.462093 2_1:+56733165 None:intergenic
AATCTCTATTATCGATCTAA+AGG 0.467046 2_1:-56732044 Msa0213610:CDS
TATGATCATGGTTAATGGGC+AGG 0.497346 2_1:-56732316 Msa0213610:intron
GATCTAAAGGAACGGACCAT+TGG 0.511484 2_1:-56732031 Msa0213610:CDS
AGCATATGCCTATATCCATA+TGG 0.512895 2_1:+56731530 None:intergenic
AGTGGTAGATTAGAGTGTGT+GGG 0.523235 2_1:+56733166 None:intergenic
TGATATATAGAAAGAGATAG+TGG 0.528900 2_1:+56733148 None:intergenic
ATTTGAGAGACAAGAAAAGA+AGG 0.533155 2_1:+56733002 None:intergenic
AGAGGTAGTTTAGCCATGGT+TGG 0.534249 2_1:+56733034 None:intergenic
AGTGTTGCTTGATCTGATGA+AGG 0.538388 2_1:+56732176 None:intergenic
CTCTGAAATCGCAGTTCCAA+TGG 0.540263 2_1:+56732015 None:intergenic
GAGAAGAGGTAGTTTAGCCA+TGG 0.544546 2_1:+56733030 None:intergenic
GATTGCAGAATTCTTCAGAA+AGG 0.545548 2_1:-56732119 Msa0213610:CDS
AGAGCAAGCATAATTGAGGT+TGG 0.555744 2_1:+56732148 None:intergenic
CATTGGAACTGCGATTTCAG+AGG 0.562954 2_1:-56732014 Msa0213610:CDS
TACAGGAGGGAATATGATCA+TGG 0.563584 2_1:-56732328 Msa0213610:intron
TTAGTACAAGGCTGCAGACA+AGG 0.569573 2_1:-56733074 Msa0213610:five_prime_UTR
ATAATAGAGATTCATGGCGA+TGG 0.571419 2_1:+56732055 None:intergenic
AGAGTGTGTGGGAGTGAGTG+TGG 0.572831 2_1:+56733177 None:intergenic
CGTGAGAGCAAGCATAATTG+AGG 0.578215 2_1:+56732144 None:intergenic
GCAGTACTGCTATTAGTACA+AGG 0.603907 2_1:-56733086 Msa0213610:five_prime_UTR
GATTCATGGCGATGGAAGCG+CGG 0.609487 2_1:+56732063 None:intergenic
CTATTATCGATCTAAAGGAA+CGG 0.620629 2_1:-56732039 Msa0213610:CDS
AGTACTGCTATACTATTCAG+TGG 0.645630 2_1:+56733101 None:intergenic
AACACAGAAAACTTGGTGCG+TGG 0.648923 2_1:-56732204 Msa0213610:intron
ATAACATCATCAACCAACCA+TGG 0.661278 2_1:-56733047 Msa0213610:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTTTTTTTAATTT+TGG + chr2_1:56731700-56731719 None:intergenic 0.0%
!! AAAAAAAAAAAAAATTTAAT+TGG + chr2_1:56732033-56732052 None:intergenic 0.0%
!!! ATTAAATTTTTTTTTTTTTT+TGG - chr2_1:56732033-56732052 Msa0213610:CDS 0.0%
!!! TTAAATTTTTTTTTTTTTTT+GGG - chr2_1:56732034-56732053 Msa0213610:CDS 0.0%
!!! TTTTTTTTTTTTTTTAATTT+TGG + chr2_1:56731700-56731719 None:intergenic 0.0%
!! AAAAAAAAAAAAAATTTAAT+TGG + chr2_1:56732033-56732052 None:intergenic 0.0%
!!! ATTAAATTTTTTTTTTTTTT+TGG - chr2_1:56732033-56732052 Msa0213610:CDS 0.0%
!!! TTAAATTTTTTTTTTTTTTT+GGG - chr2_1:56732034-56732053 Msa0213610:CDS 0.0%
!! TATTGAGATAAATTATTATA+AGG + chr2_1:56731880-56731899 None:intergenic 10.0%
!!! GGTAATTTATATTTTTTTTT+AGG + chr2_1:56732005-56732024 None:intergenic 10.0%
!! AAAAAAATTTAATTGGTTAA+TGG + chr2_1:56732026-56732045 None:intergenic 10.0%
!! AAAAACTTTATGTAATTTAT+TGG + chr2_1:56732212-56732231 None:intergenic 10.0%
!! TATTGAGATAAATTATTATA+AGG + chr2_1:56731880-56731899 None:intergenic 10.0%
!!! GGTAATTTATATTTTTTTTT+AGG + chr2_1:56732005-56732024 None:intergenic 10.0%
!! AAAAAAATTTAATTGGTTAA+TGG + chr2_1:56732026-56732045 None:intergenic 10.0%
!! AAAAACTTTATGTAATTTAT+TGG + chr2_1:56732212-56732231 None:intergenic 10.0%
!!! GTTAAATTTGAACATAATTT+TGG + chr2_1:56731753-56731772 None:intergenic 15.0%
!! AAATTATGTTCAAATTTAAC+CGG - chr2_1:56731753-56731772 Msa0213610:intron 15.0%
!!! AAATTACTAACATTTTCTTT+TGG + chr2_1:56731854-56731873 None:intergenic 15.0%
!! TAATTAATATCACTAAACAT+TGG + chr2_1:56731930-56731949 None:intergenic 15.0%
!!! ATATTTTTTTTTAGGGAAAT+TGG + chr2_1:56731997-56732016 None:intergenic 15.0%
!!! AGTATGCTATTTAATTTAAT+TGG - chr2_1:56732904-56732923 Msa0213610:intron 15.0%
!!! GTATGCTATTTAATTTAATT+GGG - chr2_1:56732905-56732924 Msa0213610:intron 15.0%
!!! GTTAAATTTGAACATAATTT+TGG + chr2_1:56731753-56731772 None:intergenic 15.0%
!! AAATTATGTTCAAATTTAAC+CGG - chr2_1:56731753-56731772 Msa0213610:intron 15.0%
!!! AAATTACTAACATTTTCTTT+TGG + chr2_1:56731854-56731873 None:intergenic 15.0%
!! TAATTAATATCACTAAACAT+TGG + chr2_1:56731930-56731949 None:intergenic 15.0%
!!! ATATTTTTTTTTAGGGAAAT+TGG + chr2_1:56731997-56732016 None:intergenic 15.0%
!!! AGTATGCTATTTAATTTAAT+TGG - chr2_1:56732904-56732923 Msa0213610:intron 15.0%
!!! GTATGCTATTTAATTTAATT+GGG - chr2_1:56732905-56732924 Msa0213610:intron 15.0%
!! GCATAATAATACTCATTATA+AGG + chr2_1:56731663-56731682 None:intergenic 20.0%
!!! ATGTAATTTGCAAAGTAATA+TGG - chr2_1:56731825-56731844 Msa0213610:intron 20.0%
!!! AGTATTTTTTTGACTCAAAA+TGG + chr2_1:56733003-56733022 None:intergenic 20.0%
!! ATCAGTATCTTAACATTAAT+TGG + chr2_1:56733066-56733085 None:intergenic 20.0%
!! GCATAATAATACTCATTATA+AGG + chr2_1:56731663-56731682 None:intergenic 20.0%
!!! ATGTAATTTGCAAAGTAATA+TGG - chr2_1:56731825-56731844 Msa0213610:intron 20.0%
!!! AGTATTTTTTTGACTCAAAA+TGG + chr2_1:56733003-56733022 None:intergenic 20.0%
!! ATCAGTATCTTAACATTAAT+TGG + chr2_1:56733066-56733085 None:intergenic 20.0%
! TTTAAAAAGGAAACAATGGT+TGG + chr2_1:56731260-56731279 None:intergenic 25.0%
! TGATATATAGAAAGAGATAG+TGG + chr2_1:56731326-56731345 None:intergenic 25.0%
! GAGACAAACAAATTTAAAGA+AGG + chr2_1:56731521-56731540 None:intergenic 25.0%
! TTTATTACTAGAATCTGCTT+TGG - chr2_1:56731624-56731643 Msa0213610:exon 25.0%
!!! TTTTTAGGGAAATTGGTTAA+TGG + chr2_1:56731990-56732009 None:intergenic 25.0%
! TATGAAAAACACAGAAAACT+TGG - chr2_1:56732260-56732279 Msa0213610:intron 25.0%
! AATCTCTATTATCGATCTAA+AGG - chr2_1:56732427-56732446 Msa0213610:intron 25.0%
!!! CCAATCATAGTTCTAATTTT+CGG - chr2_1:56732600-56732619 Msa0213610:intron 25.0%
! ATTTCAAACCATATGGATAT+AGG - chr2_1:56732933-56732952 Msa0213610:intron 25.0%
! TCAAAATGGTTCAAAGTTAA+GGG + chr2_1:56732989-56733008 None:intergenic 25.0%
! TAATTGGTGCAAAATTTAGA+TGG + chr2_1:56733050-56733069 None:intergenic 25.0%
! TTTAAAAAGGAAACAATGGT+TGG + chr2_1:56731260-56731279 None:intergenic 25.0%
! TGATATATAGAAAGAGATAG+TGG + chr2_1:56731326-56731345 None:intergenic 25.0%
! GAGACAAACAAATTTAAAGA+AGG + chr2_1:56731521-56731540 None:intergenic 25.0%
! TTTATTACTAGAATCTGCTT+TGG - chr2_1:56731624-56731643 Msa0213610:exon 25.0%
!!! TTTTTAGGGAAATTGGTTAA+TGG + chr2_1:56731990-56732009 None:intergenic 25.0%
! TATGAAAAACACAGAAAACT+TGG - chr2_1:56732260-56732279 Msa0213610:intron 25.0%
! AATCTCTATTATCGATCTAA+AGG - chr2_1:56732427-56732446 Msa0213610:intron 25.0%
!!! CCAATCATAGTTCTAATTTT+CGG - chr2_1:56732600-56732619 Msa0213610:intron 25.0%
! ATTTCAAACCATATGGATAT+AGG - chr2_1:56732933-56732952 Msa0213610:intron 25.0%
! TCAAAATGGTTCAAAGTTAA+GGG + chr2_1:56732989-56733008 None:intergenic 25.0%
! TAATTGGTGCAAAATTTAGA+TGG + chr2_1:56733050-56733069 None:intergenic 25.0%
AATAAAGAGGGGGTTTAAAA+AGG + chr2_1:56731273-56731292 None:intergenic 30.0%
AAAAGAAGGAAAAAGAGAAG+AGG + chr2_1:56731458-56731477 None:intergenic 30.0%
ATTTGAGAGACAAGAAAAGA+AGG + chr2_1:56731472-56731491 None:intergenic 30.0%
GTAATGTACTACATCTACAT+TGG - chr2_1:56731572-56731591 Msa0213610:three_prime_UTR 30.0%
!!! CTGGTCTCATTTTGTTTTTT+TGG - chr2_1:56731596-56731615 Msa0213610:three_prime_UTR 30.0%
GGAATATGATCATGGTTAAT+GGG - chr2_1:56732151-56732170 Msa0213610:CDS 30.0%
AGATCGATAATAGAGATTCA+TGG + chr2_1:56732425-56732444 None:intergenic 30.0%
CTATTATCGATCTAAAGGAA+CGG - chr2_1:56732432-56732451 Msa0213610:intron 30.0%
AATGAGTTATGTGACTTACT+TGG + chr2_1:56732508-56732527 None:intergenic 30.0%
CCGAAAATTAGAACTATGAT+TGG + chr2_1:56732603-56732622 None:intergenic 30.0%
CAACATTGTAACTGCAATTA+TGG - chr2_1:56732651-56732670 Msa0213610:intron 30.0%
CCATGTGAACATCAATATTA+TGG + chr2_1:56732706-56732725 None:intergenic 30.0%
CCATAATATTGATGTTCACA+TGG - chr2_1:56732703-56732722 Msa0213610:intron 30.0%
!!! TGGTTGATGGTTTTAAATTG+CGG + chr2_1:56732751-56732770 None:intergenic 30.0%
GTCATATCAAACTCGTAAAT+TGG + chr2_1:56732771-56732790 None:intergenic 30.0%
! TTTTTCTCATTCTGAATTGC+AGG - chr2_1:56732811-56732830 Msa0213610:intron 30.0%
ACTGCATTTATGCATAGAAA+TGG - chr2_1:56732842-56732861 Msa0213610:intron 30.0%
CTCAAAATGGTTCAAAGTTA+AGG + chr2_1:56732990-56733009 None:intergenic 30.0%
ACAACTAAAAATGAACGGAT+GGG + chr2_1:56733111-56733130 None:intergenic 30.0%
AGACGACAACTAAAAATGAA+CGG + chr2_1:56733116-56733135 None:intergenic 30.0%
!!! CATTTTTAGTTGTCGTCTTT+TGG - chr2_1:56733118-56733137 Msa0213610:five_prime_UTR 30.0%
AATAAAGAGGGGGTTTAAAA+AGG + chr2_1:56731273-56731292 None:intergenic 30.0%
AAAAGAAGGAAAAAGAGAAG+AGG + chr2_1:56731458-56731477 None:intergenic 30.0%
ATTTGAGAGACAAGAAAAGA+AGG + chr2_1:56731472-56731491 None:intergenic 30.0%
GTAATGTACTACATCTACAT+TGG - chr2_1:56731572-56731591 Msa0213610:three_prime_UTR 30.0%
!!! CTGGTCTCATTTTGTTTTTT+TGG - chr2_1:56731596-56731615 Msa0213610:three_prime_UTR 30.0%
GGAATATGATCATGGTTAAT+GGG - chr2_1:56732151-56732170 Msa0213610:CDS 30.0%
AGATCGATAATAGAGATTCA+TGG + chr2_1:56732425-56732444 None:intergenic 30.0%
CTATTATCGATCTAAAGGAA+CGG - chr2_1:56732432-56732451 Msa0213610:intron 30.0%
AATGAGTTATGTGACTTACT+TGG + chr2_1:56732508-56732527 None:intergenic 30.0%
CCGAAAATTAGAACTATGAT+TGG + chr2_1:56732603-56732622 None:intergenic 30.0%
CAACATTGTAACTGCAATTA+TGG - chr2_1:56732651-56732670 Msa0213610:intron 30.0%
CCATGTGAACATCAATATTA+TGG + chr2_1:56732706-56732725 None:intergenic 30.0%
CCATAATATTGATGTTCACA+TGG - chr2_1:56732703-56732722 Msa0213610:intron 30.0%
!!! TGGTTGATGGTTTTAAATTG+CGG + chr2_1:56732751-56732770 None:intergenic 30.0%
GTCATATCAAACTCGTAAAT+TGG + chr2_1:56732771-56732790 None:intergenic 30.0%
! TTTTTCTCATTCTGAATTGC+AGG - chr2_1:56732811-56732830 Msa0213610:intron 30.0%
ACTGCATTTATGCATAGAAA+TGG - chr2_1:56732842-56732861 Msa0213610:intron 30.0%
CTCAAAATGGTTCAAAGTTA+AGG + chr2_1:56732990-56733009 None:intergenic 30.0%
ACAACTAAAAATGAACGGAT+GGG + chr2_1:56733111-56733130 None:intergenic 30.0%
AGACGACAACTAAAAATGAA+CGG + chr2_1:56733116-56733135 None:intergenic 30.0%
!!! CATTTTTAGTTGTCGTCTTT+TGG - chr2_1:56733118-56733137 Msa0213610:five_prime_UTR 30.0%
GGGGTTTAAAAAGGAAACAA+TGG + chr2_1:56731264-56731283 None:intergenic 35.0%
AGTGAGTGTGGAAATAAAGA+GGG + chr2_1:56731285-56731304 None:intergenic 35.0%
AGTACTGCTATACTATTCAG+TGG + chr2_1:56731373-56731392 None:intergenic 35.0%
ATAACATCATCAACCAACCA+TGG - chr2_1:56731424-56731443 Msa0213610:three_prime_UTR 35.0%
! CTTTTCTTGTCTCTCAAATC+AGG - chr2_1:56731473-56731492 Msa0213610:three_prime_UTR 35.0%
TTGTTTAAGTGATCTGAGTC+CGG + chr2_1:56731775-56731794 None:intergenic 35.0%
GGGAATATGATCATGGTTAA+TGG - chr2_1:56732150-56732169 Msa0213610:CDS 35.0%
GATTGCAGAATTCTTCAGAA+AGG - chr2_1:56732352-56732371 Msa0213610:intron 35.0%
ATAATAGAGATTCATGGCGA+TGG + chr2_1:56732419-56732438 None:intergenic 35.0%
!! TATGATTGGTTTCGATGTCA+AGG + chr2_1:56732589-56732608 None:intergenic 35.0%
CAAACTCGTAAATTGGTTGA+TGG + chr2_1:56732764-56732783 None:intergenic 35.0%
TCATTCTGAATTGCAGGTTA+TGG - chr2_1:56732817-56732836 Msa0213610:intron 35.0%
! GGTTGTCATTTCAAACCATA+TGG - chr2_1:56732926-56732945 Msa0213610:intron 35.0%
AGCATATGCCTATATCCATA+TGG + chr2_1:56732944-56732963 None:intergenic 35.0%
GACAACTAAAAATGAACGGA+TGG + chr2_1:56733112-56733131 None:intergenic 35.0%
GGGGTTTAAAAAGGAAACAA+TGG + chr2_1:56731264-56731283 None:intergenic 35.0%
AGTGAGTGTGGAAATAAAGA+GGG + chr2_1:56731285-56731304 None:intergenic 35.0%
AGTACTGCTATACTATTCAG+TGG + chr2_1:56731373-56731392 None:intergenic 35.0%
ATAACATCATCAACCAACCA+TGG - chr2_1:56731424-56731443 Msa0213610:three_prime_UTR 35.0%
! CTTTTCTTGTCTCTCAAATC+AGG - chr2_1:56731473-56731492 Msa0213610:three_prime_UTR 35.0%
TTGTTTAAGTGATCTGAGTC+CGG + chr2_1:56731775-56731794 None:intergenic 35.0%
GGGAATATGATCATGGTTAA+TGG - chr2_1:56732150-56732169 Msa0213610:CDS 35.0%
GATTGCAGAATTCTTCAGAA+AGG - chr2_1:56732352-56732371 Msa0213610:intron 35.0%
ATAATAGAGATTCATGGCGA+TGG + chr2_1:56732419-56732438 None:intergenic 35.0%
!! TATGATTGGTTTCGATGTCA+AGG + chr2_1:56732589-56732608 None:intergenic 35.0%
CAAACTCGTAAATTGGTTGA+TGG + chr2_1:56732764-56732783 None:intergenic 35.0%
TCATTCTGAATTGCAGGTTA+TGG - chr2_1:56732817-56732836 Msa0213610:intron 35.0%
! GGTTGTCATTTCAAACCATA+TGG - chr2_1:56732926-56732945 Msa0213610:intron 35.0%
AGCATATGCCTATATCCATA+TGG + chr2_1:56732944-56732963 None:intergenic 35.0%
GACAACTAAAAATGAACGGA+TGG + chr2_1:56733112-56733131 None:intergenic 35.0%
TGAGTGTGGAAATAAAGAGG+GGG + chr2_1:56731283-56731302 None:intergenic 40.0%
GTGAGTGTGGAAATAAAGAG+GGG + chr2_1:56731284-56731303 None:intergenic 40.0%
GAGTGAGTGTGGAAATAAAG+AGG + chr2_1:56731286-56731305 None:intergenic 40.0%
AGTGGTAGATTAGAGTGTGT+GGG + chr2_1:56731308-56731327 None:intergenic 40.0%
TAGTGGTAGATTAGAGTGTG+TGG + chr2_1:56731309-56731328 None:intergenic 40.0%
GCAGTACTGCTATTAGTACA+AGG - chr2_1:56731385-56731404 Msa0213610:three_prime_UTR 40.0%
GTACTACATCTACATTGGTC+TGG - chr2_1:56731577-56731596 Msa0213610:three_prime_UTR 40.0%
! TTCCCTCTTTTGACATGTAC+AGG - chr2_1:56732126-56732145 Msa0213610:CDS 40.0%
CTCCTGTACATGTCAAAAGA+GGG + chr2_1:56732131-56732150 None:intergenic 40.0%
! CTCTTTTGACATGTACAGGA+GGG - chr2_1:56732130-56732149 Msa0213610:CDS 40.0%
TACAGGAGGGAATATGATCA+TGG - chr2_1:56732143-56732162 Msa0213610:CDS 40.0%
! TATGATCATGGTTAATGGGC+AGG - chr2_1:56732155-56732174 Msa0213610:CDS 40.0%
!! AGTGTTGCTTGATCTGATGA+AGG + chr2_1:56732298-56732317 None:intergenic 40.0%
AGAGCAAGCATAATTGAGGT+TGG + chr2_1:56732326-56732345 None:intergenic 40.0%
!! AGATTTTCAGGACTAGAGCA+GGG + chr2_1:56732382-56732401 None:intergenic 40.0%
TGTTGCATAGACCGCAATTA+TGG + chr2_1:56732633-56732652 None:intergenic 40.0%
ACAAGCAAATGAAGTCGATG+CGG + chr2_1:56732677-56732696 None:intergenic 40.0%
GTTCACATGGTAACTACAAC+CGG - chr2_1:56732716-56732735 Msa0213610:intron 40.0%
TGAGTGTGGAAATAAAGAGG+GGG + chr2_1:56731283-56731302 None:intergenic 40.0%
GTGAGTGTGGAAATAAAGAG+GGG + chr2_1:56731284-56731303 None:intergenic 40.0%
GAGTGAGTGTGGAAATAAAG+AGG + chr2_1:56731286-56731305 None:intergenic 40.0%
AGTGGTAGATTAGAGTGTGT+GGG + chr2_1:56731308-56731327 None:intergenic 40.0%
TAGTGGTAGATTAGAGTGTG+TGG + chr2_1:56731309-56731328 None:intergenic 40.0%
GCAGTACTGCTATTAGTACA+AGG - chr2_1:56731385-56731404 Msa0213610:three_prime_UTR 40.0%
GTACTACATCTACATTGGTC+TGG - chr2_1:56731577-56731596 Msa0213610:three_prime_UTR 40.0%
! TTCCCTCTTTTGACATGTAC+AGG - chr2_1:56732126-56732145 Msa0213610:CDS 40.0%
CTCCTGTACATGTCAAAAGA+GGG + chr2_1:56732131-56732150 None:intergenic 40.0%
! CTCTTTTGACATGTACAGGA+GGG - chr2_1:56732130-56732149 Msa0213610:CDS 40.0%
TACAGGAGGGAATATGATCA+TGG - chr2_1:56732143-56732162 Msa0213610:CDS 40.0%
! TATGATCATGGTTAATGGGC+AGG - chr2_1:56732155-56732174 Msa0213610:CDS 40.0%
!! AGTGTTGCTTGATCTGATGA+AGG + chr2_1:56732298-56732317 None:intergenic 40.0%
AGAGCAAGCATAATTGAGGT+TGG + chr2_1:56732326-56732345 None:intergenic 40.0%
!! AGATTTTCAGGACTAGAGCA+GGG + chr2_1:56732382-56732401 None:intergenic 40.0%
TGTTGCATAGACCGCAATTA+TGG + chr2_1:56732633-56732652 None:intergenic 40.0%
ACAAGCAAATGAAGTCGATG+CGG + chr2_1:56732677-56732696 None:intergenic 40.0%
GTTCACATGGTAACTACAAC+CGG - chr2_1:56732716-56732735 Msa0213610:intron 40.0%
TTAGTACAAGGCTGCAGACA+AGG - chr2_1:56731397-56731416 Msa0213610:three_prime_UTR 45.0%
AGAGGTAGTTTAGCCATGGT+TGG + chr2_1:56731440-56731459 None:intergenic 45.0%
GAGAAGAGGTAGTTTAGCCA+TGG + chr2_1:56731444-56731463 None:intergenic 45.0%
CCTCCTGTACATGTCAAAAG+AGG + chr2_1:56732132-56732151 None:intergenic 45.0%
! CCTCTTTTGACATGTACAGG+AGG - chr2_1:56732129-56732148 Msa0213610:CDS 45.0%
!! AACACAGAAAACTTGGTGCG+TGG - chr2_1:56732267-56732286 Msa0213610:intron 45.0%
CGTGAGAGCAAGCATAATTG+AGG + chr2_1:56732330-56732349 None:intergenic 45.0%
!! GATTTTCAGGACTAGAGCAG+GGG + chr2_1:56732381-56732400 None:intergenic 45.0%
!! GAGATTTTCAGGACTAGAGC+AGG + chr2_1:56732383-56732402 None:intergenic 45.0%
GATCTAAAGGAACGGACCAT+TGG - chr2_1:56732440-56732459 Msa0213610:intron 45.0%
!! CTCTGAAATCGCAGTTCCAA+TGG + chr2_1:56732459-56732478 None:intergenic 45.0%
CATTGGAACTGCGATTTCAG+AGG - chr2_1:56732457-56732476 Msa0213610:intron 45.0%
TCGGACTGCAACCATAATTG+CGG - chr2_1:56732619-56732638 Msa0213610:intron 45.0%
TAAATTGCGGTTGCAACCAC+CGG + chr2_1:56732738-56732757 None:intergenic 45.0%
TTAGTACAAGGCTGCAGACA+AGG - chr2_1:56731397-56731416 Msa0213610:three_prime_UTR 45.0%
AGAGGTAGTTTAGCCATGGT+TGG + chr2_1:56731440-56731459 None:intergenic 45.0%
GAGAAGAGGTAGTTTAGCCA+TGG + chr2_1:56731444-56731463 None:intergenic 45.0%
CCTCCTGTACATGTCAAAAG+AGG + chr2_1:56732132-56732151 None:intergenic 45.0%
! CCTCTTTTGACATGTACAGG+AGG - chr2_1:56732129-56732148 Msa0213610:CDS 45.0%
!! AACACAGAAAACTTGGTGCG+TGG - chr2_1:56732267-56732286 Msa0213610:intron 45.0%
CGTGAGAGCAAGCATAATTG+AGG + chr2_1:56732330-56732349 None:intergenic 45.0%
!! GATTTTCAGGACTAGAGCAG+GGG + chr2_1:56732381-56732400 None:intergenic 45.0%
!! GAGATTTTCAGGACTAGAGC+AGG + chr2_1:56732383-56732402 None:intergenic 45.0%
GATCTAAAGGAACGGACCAT+TGG - chr2_1:56732440-56732459 Msa0213610:intron 45.0%
!! CTCTGAAATCGCAGTTCCAA+TGG + chr2_1:56732459-56732478 None:intergenic 45.0%
CATTGGAACTGCGATTTCAG+AGG - chr2_1:56732457-56732476 Msa0213610:intron 45.0%
TCGGACTGCAACCATAATTG+CGG - chr2_1:56732619-56732638 Msa0213610:intron 45.0%
TAAATTGCGGTTGCAACCAC+CGG + chr2_1:56732738-56732757 None:intergenic 45.0%
!!! GTAATTTATATTTTTTTTTA+GGG + chr2_1:56732004-56732023 None:intergenic 5.0%
!!! GTAATTTATATTTTTTTTTA+GGG + chr2_1:56732004-56732023 None:intergenic 5.0%
! GCGCGGTTCATGAGATTTTC+AGG + chr2_1:56732394-56732413 None:intergenic 50.0%
CACATGGTAACTACAACCGG+TGG - chr2_1:56732719-56732738 Msa0213610:intron 50.0%
! GCGCGGTTCATGAGATTTTC+AGG + chr2_1:56732394-56732413 None:intergenic 50.0%
CACATGGTAACTACAACCGG+TGG - chr2_1:56732719-56732738 Msa0213610:intron 50.0%
AGAGTGTGTGGGAGTGAGTG+TGG + chr2_1:56731297-56731316 None:intergenic 55.0%
GATTCATGGCGATGGAAGCG+CGG + chr2_1:56732411-56732430 None:intergenic 55.0%
AGAGTGTGTGGGAGTGAGTG+TGG + chr2_1:56731297-56731316 None:intergenic 55.0%
GATTCATGGCGATGGAAGCG+CGG + chr2_1:56732411-56732430 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 56731256 56733237 56731256 ID=Msa0213610;Name=Msa0213610
chr2_1 mRNA 56731256 56733237 56731256 ID=Msa0213610-mRNA-1;Parent=Msa0213610;Name=Msa0213610-mRNA-1;_AED=0.34;_eAED=0.34;_QI=160|1|1|1|0.75|0.6|5|379|113
chr2_1 exon 56731256 56731660 56731256 ID=Msa0213610-mRNA-1:exon:15807;Parent=Msa0213610-mRNA-1
chr2_1 exon 56731985 56732219 56731985 ID=Msa0213610-mRNA-1:exon:15806;Parent=Msa0213610-mRNA-1
chr2_1 exon 56732317 56732345 56732317 ID=Msa0213610-mRNA-1:exon:15805;Parent=Msa0213610-mRNA-1
chr2_1 exon 56732999 56733199 56732999 ID=Msa0213610-mRNA-1:exon:15804;Parent=Msa0213610-mRNA-1
chr2_1 exon 56733227 56733237 56733227 ID=Msa0213610-mRNA-1:exon:15803;Parent=Msa0213610-mRNA-1
chr2_1 five_prime_UTR 56733227 56733237 56733227 ID=Msa0213610-mRNA-1:five_prime_utr;Parent=Msa0213610-mRNA-1
chr2_1 five_prime_UTR 56733051 56733199 56733051 ID=Msa0213610-mRNA-1:five_prime_utr;Parent=Msa0213610-mRNA-1
chr2_1 CDS 56732999 56733050 56732999 ID=Msa0213610-mRNA-1:cds;Parent=Msa0213610-mRNA-1
chr2_1 CDS 56732317 56732345 56732317 ID=Msa0213610-mRNA-1:cds;Parent=Msa0213610-mRNA-1
chr2_1 CDS 56731985 56732219 56731985 ID=Msa0213610-mRNA-1:cds;Parent=Msa0213610-mRNA-1
chr2_1 CDS 56731635 56731660 56731635 ID=Msa0213610-mRNA-1:cds;Parent=Msa0213610-mRNA-1
chr2_1 three_prime_UTR 56731256 56731634 56731256 ID=Msa0213610-mRNA-1:three_prime_utr;Parent=Msa0213610-mRNA-1
Gene Sequence

>Msa0213610

ATGGCTAAACTACCTCTTCTCTTTTTCCTTCTTTTCTTGTCTCTCAAATCAGGAGGGAATATGATCATGGTTAATGGGCAGAAAACTTGGTGCGTGGCAAAGCCTTCATCAGATCAAGCAACACTTTTATCCAACCTCAATTATGCTTGCTCTCACGTTGATTGCAGAATTCTTCAGAAAGGATGCCCCTGCTCTAGTCCTGAAAATCTCATGAACCGCGCTTCCATCGCCATGAATCTCTATTATCGATCTAAAGGAACGGACCATTGGAACTGCGATTTCAGAGGATCTGCTCTGATTGTTGTGACTGATCCAAGTTATGGTAACTGCATTTATGCATAG

Protein sequence

>Msa0213610

MAKLPLLFFLLFLSLKSGGNMIMVNGQKTWCVAKPSSDQATLLSNLNYACSHVDCRILQKGCPCSSPENLMNRASIAMNLYYRSKGTDHWNCDFRGSALIVVTDPSYGNCIYA*