Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1106310 | XP_013448863.1 | 98.043 | 460 | 9 | 0 | 1 | 460 | 1 | 460 | 0.0 | 942 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1106310 | sp|Q9LZM1|ORP3A_ARATH | 78.091 | 461 | 91 | 3 | 1 | 459 | 1 | 453 | 0.0 | 763 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1106310 | A0A072UAQ5 | 98.043 | 460 | 9 | 0 | 1 | 460 | 1 | 460 | 0.0 | 942 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0090380 | Msa1106310 | 0.831323 | 1.782039e-55 | -8.615850e-47 |
| Msa0094710 | Msa1106310 | 0.856924 | 2.314208e-62 | -8.615850e-47 |
| Msa0613300 | Msa1106310 | 0.804871 | 1.754297e-49 | -8.615850e-47 |
| Msa0615210 | Msa1106310 | 0.803129 | 4.038797e-49 | -8.615850e-47 |
| Msa0641130 | Msa1106310 | 0.819128 | 1.366219e-52 | -8.615850e-47 |
| Msa0679670 | Msa1106310 | 0.822347 | 2.487478e-53 | -8.615850e-47 |
| Msa0713060 | Msa1106310 | 0.819199 | 1.316599e-52 | -8.615850e-47 |
| Msa0744640 | Msa1106310 | 0.804903 | 1.727356e-49 | -8.615850e-47 |
| Msa0798450 | Msa1106310 | 0.824951 | 6.111702e-54 | -8.615850e-47 |
| Msa0812530 | Msa1106310 | 0.807868 | 4.095238e-50 | -8.615850e-47 |
| Msa0841730 | Msa1106310 | 0.804582 | 2.016067e-49 | -8.615850e-47 |
| Msa0137860 | Msa1106310 | 0.823668 | 1.223854e-53 | -8.615850e-47 |
| Msa0193190 | Msa1106310 | 0.805375 | 1.376147e-49 | -8.615850e-47 |
| Msa0224130 | Msa1106310 | 0.818031 | 2.423078e-52 | -8.615850e-47 |
| Msa0225850 | Msa1106310 | 0.849877 | 2.439323e-60 | -8.615850e-47 |
| Msa0443450 | Msa1106310 | 0.805816 | 1.112078e-49 | -8.615850e-47 |
| Msa1011250 | Msa1106310 | 0.856397 | 3.308173e-62 | -8.615850e-47 |
| Msa1015880 | Msa1106310 | 0.805418 | 1.347649e-49 | -8.615850e-47 |
| Msa1059670 | Msa1106310 | 0.805980 | 1.027098e-49 | -8.615850e-47 |
| Msa1064240 | Msa1106310 | 0.805483 | 1.306082e-49 | -8.615850e-47 |
| Msa1089190 | Msa1106310 | 0.815071 | 1.115202e-51 | -8.615850e-47 |
| Msa1106310 | Msa1120580 | 0.803774 | 2.969570e-49 | -8.615850e-47 |
| Msa1106310 | Msa1154240 | 0.821299 | 4.346041e-53 | -8.615850e-47 |
| Msa1106310 | Msa1180720 | 0.820655 | 6.116980e-53 | -8.615850e-47 |
| Msa1106310 | Msa1188350 | 0.800369 | 1.488943e-48 | -8.615850e-47 |
| Msa1106310 | Msa1208990 | 0.860239 | 2.372074e-63 | -8.615850e-47 |
| Msa1106310 | Msa1225580 | 0.833160 | 6.256660e-56 | -8.615850e-47 |
| Msa1106310 | Msa1231710 | 0.838597 | 2.616698e-57 | -8.615850e-47 |
| Msa1106310 | Msa1252810 | 0.825233 | 5.241447e-54 | -8.615850e-47 |
| Msa1106310 | Msa1272010 | 0.802485 | 5.485087e-49 | -8.615850e-47 |
| Msa1106310 | Msa1274380 | 0.815340 | 9.721948e-52 | -8.615850e-47 |
| Msa1106310 | Msa1312440 | 0.836206 | 1.071684e-56 | -8.615850e-47 |
| Msa1106310 | Msa1355510 | 0.830961 | 2.187107e-55 | -8.615850e-47 |
| Msa1106310 | Msa1364080 | 0.810103 | 1.361391e-50 | -8.615850e-47 |
| Msa1106310 | Msa1397390 | 0.865010 | 8.049154e-65 | -8.615850e-47 |
| Msa1106310 | Msa1433410 | 0.829689 | 4.473095e-55 | -8.615850e-47 |
| Msa1106310 | Msa1443200 | 0.802565 | 5.281894e-49 | -8.615850e-47 |
| Msa1106310 | Msa1443620 | 0.830510 | 2.820613e-55 | -8.615850e-47 |
| Msa0260520 | Msa1106310 | 0.859000 | 5.596717e-63 | -8.615850e-47 |
| Msa0264680 | Msa1106310 | 0.829368 | 5.352581e-55 | -8.615850e-47 |
| Msa0265270 | Msa1106310 | 0.816401 | 5.635273e-52 | -8.615850e-47 |
| Msa0276430 | Msa1106310 | 0.819757 | 9.823486e-53 | -8.615850e-47 |
| Msa0302730 | Msa1106310 | 0.834001 | 3.856526e-56 | -8.615850e-47 |
| Msa0316470 | Msa1106310 | 0.805089 | 1.579590e-49 | -8.615850e-47 |
| Msa0545050 | Msa1106310 | 0.816719 | 4.784063e-52 | -8.615850e-47 |
| Msa0573950 | Msa1106310 | 0.813783 | 2.149098e-51 | -8.615850e-47 |
| Msa0576560 | Msa1106310 | 0.804914 | 1.718517e-49 | -8.615850e-47 |
| Msa0577660 | Msa1106310 | 0.805236 | 1.471296e-49 | -8.615850e-47 |
| Msa0577750 | Msa1106310 | 0.802690 | 4.978172e-49 | -8.615850e-47 |
| Msa0588710 | Msa1106310 | 0.810634 | 1.045460e-50 | -8.615850e-47 |
| Msa0600590 | Msa1106310 | 0.834897 | 2.297901e-56 | -8.615850e-47 |
| Msa0852790 | Msa1106310 | 0.828300 | 9.706901e-55 | -8.615850e-47 |
| Msa0863990 | Msa1106310 | 0.806656 | 7.397895e-50 | -8.615850e-47 |
| Msa0945130 | Msa1106310 | 0.820470 | 6.743389e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1106310 | MtrunA17_Chr7g0238731 | 98.043 | 460 | 9 | 0 | 1 | 460 | 1 | 460 | 0.0 | 942 |
| Msa1106310 | MtrunA17_Chr4g0031691 | 75.336 | 446 | 107 | 2 | 18 | 460 | 12 | 457 | 0.0 | 731 |
| Msa1106310 | MtrunA17_Chr3g0115081 | 34.921 | 378 | 220 | 13 | 73 | 439 | 403 | 765 | 1.13e-51 | 186 |
| Msa1106310 | MtrunA17_Chr3g0131011 | 35.054 | 368 | 215 | 12 | 73 | 431 | 383 | 735 | 8.92e-50 | 181 |
| Msa1106310 | MtrunA17_Chr5g0424281 | 33.773 | 379 | 223 | 13 | 73 | 439 | 397 | 759 | 2.67e-47 | 174 |
| Msa1106310 | MtrunA17_Chr4g0056441 | 33.067 | 375 | 229 | 10 | 73 | 439 | 391 | 751 | 1.81e-45 | 169 |
| Msa1106310 | MtrunA17_Chr3g0123351 | 33.696 | 368 | 217 | 12 | 75 | 431 | 437 | 788 | 5.06e-45 | 167 |
| Msa1106310 | MtrunA17_Chr4g0071891 | 26.706 | 337 | 198 | 13 | 92 | 408 | 8 | 315 | 2.88e-16 | 79.7 |
| Msa1106310 | MtrunA17_Chr2g0298561 | 26.627 | 338 | 212 | 13 | 83 | 408 | 46 | 359 | 8.47e-15 | 75.9 |
| Msa1106310 | MtrunA17_Chr2g0298571 | 25.588 | 340 | 206 | 14 | 83 | 404 | 47 | 357 | 6.29e-13 | 70.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1106310 | AT5G02100.1 | 78.091 | 461 | 91 | 3 | 1 | 459 | 1 | 453 | 0.0 | 763 |
| Msa1106310 | AT3G09300.1 | 77.560 | 459 | 98 | 3 | 1 | 457 | 1 | 456 | 0.0 | 757 |
| Msa1106310 | AT5G59420.1 | 77.333 | 450 | 92 | 3 | 18 | 460 | 11 | 457 | 0.0 | 745 |
| Msa1106310 | AT5G02100.3 | 81.055 | 417 | 78 | 1 | 43 | 459 | 11 | 426 | 0.0 | 727 |
| Msa1106310 | AT5G02100.2 | 80.734 | 327 | 54 | 2 | 1 | 325 | 1 | 320 | 0.0 | 563 |
| Msa1106310 | AT4G12460.3 | 33.155 | 374 | 225 | 11 | 73 | 439 | 135 | 490 | 6.00e-52 | 183 |
| Msa1106310 | AT4G12460.4 | 33.155 | 374 | 225 | 11 | 73 | 439 | 135 | 490 | 6.00e-52 | 183 |
| Msa1106310 | AT4G12460.9 | 33.155 | 374 | 225 | 11 | 73 | 439 | 135 | 490 | 6.00e-52 | 183 |
| Msa1106310 | AT4G12460.7 | 33.155 | 374 | 225 | 11 | 73 | 439 | 324 | 679 | 1.24e-50 | 183 |
| Msa1106310 | AT4G12460.8 | 33.155 | 374 | 225 | 11 | 73 | 439 | 323 | 678 | 1.53e-50 | 182 |
| Msa1106310 | AT4G12460.1 | 33.155 | 374 | 225 | 11 | 73 | 439 | 323 | 678 | 1.53e-50 | 182 |
| Msa1106310 | AT4G12460.2 | 32.791 | 369 | 223 | 11 | 77 | 439 | 1 | 350 | 2.90e-50 | 175 |
| Msa1106310 | AT4G08180.2 | 34.375 | 384 | 222 | 14 | 69 | 439 | 432 | 798 | 8.69e-50 | 182 |
| Msa1106310 | AT4G08180.1 | 34.375 | 384 | 222 | 14 | 69 | 439 | 433 | 799 | 8.92e-50 | 182 |
| Msa1106310 | AT4G08180.4 | 34.375 | 384 | 222 | 14 | 69 | 439 | 433 | 799 | 8.92e-50 | 182 |
| Msa1106310 | AT4G22540.2 | 32.626 | 377 | 230 | 11 | 73 | 439 | 133 | 495 | 1.44e-49 | 177 |
| Msa1106310 | AT4G22540.3 | 32.626 | 377 | 230 | 11 | 73 | 439 | 133 | 495 | 1.44e-49 | 177 |
| Msa1106310 | AT4G22540.6 | 32.626 | 377 | 230 | 11 | 73 | 439 | 133 | 495 | 1.44e-49 | 177 |
| Msa1106310 | AT4G22540.4 | 32.626 | 377 | 230 | 11 | 73 | 439 | 133 | 495 | 1.44e-49 | 177 |
| Msa1106310 | AT1G13170.1 | 35.121 | 373 | 213 | 13 | 75 | 435 | 435 | 790 | 8.51e-49 | 179 |
| Msa1106310 | AT4G08180.3 | 34.375 | 384 | 222 | 14 | 69 | 439 | 432 | 798 | 9.97e-49 | 179 |
| Msa1106310 | AT4G22540.5 | 32.632 | 380 | 226 | 12 | 73 | 439 | 344 | 706 | 3.12e-48 | 176 |
| Msa1106310 | AT4G22540.1 | 32.632 | 380 | 226 | 12 | 73 | 439 | 344 | 706 | 3.12e-48 | 176 |
| Msa1106310 | AT2G31030.1 | 33.770 | 382 | 220 | 15 | 69 | 439 | 122 | 481 | 4.48e-48 | 172 |
| Msa1106310 | AT2G31020.1 | 34.211 | 380 | 221 | 15 | 69 | 439 | 407 | 766 | 2.43e-47 | 174 |
| Msa1106310 | AT1G13170.2 | 33.249 | 394 | 213 | 13 | 75 | 435 | 435 | 811 | 9.03e-46 | 170 |
| Msa1106310 | AT4G12460.5 | 31.206 | 282 | 175 | 9 | 73 | 345 | 323 | 594 | 1.53e-32 | 130 |
| Msa1106310 | AT4G12460.6 | 31.206 | 282 | 175 | 9 | 73 | 345 | 324 | 595 | 1.60e-32 | 130 |
| Msa1106310 | AT4G25850.1 | 35.915 | 142 | 82 | 5 | 83 | 218 | 45 | 183 | 1.05e-12 | 69.7 |
| Msa1106310 | AT4G25850.3 | 36.620 | 142 | 81 | 5 | 83 | 218 | 45 | 183 | 1.39e-12 | 68.2 |
| Msa1106310 | AT4G25850.2 | 35.915 | 142 | 82 | 5 | 83 | 218 | 147 | 285 | 1.57e-12 | 69.7 |
| Msa1106310 | AT4G25860.1 | 33.117 | 154 | 94 | 5 | 83 | 230 | 46 | 196 | 2.12e-12 | 68.9 |
| Msa1106310 | AT4G25860.2 | 33.117 | 154 | 94 | 5 | 83 | 230 | 40 | 190 | 2.25e-12 | 68.9 |
Find 136 sgRNAs with CRISPR-Local
Find 346 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCTTGGCAATTTGATAATT+TGG | 0.085476 | 7_3:+45900823 | Msa1106310:CDS |
| GCTTCAACTTTCTCCAATTT+TGG | 0.123553 | 7_3:+45895786 | Msa1106310:CDS |
| GCATCTTCAGTTCCTCCTTC+TGG | 0.209164 | 7_3:-45896382 | None:intergenic |
| AGCCGAGTTGCCAAGAAATT+TGG | 0.211425 | 7_3:-45898260 | None:intergenic |
| TGAAATTTGATCTTGTTTCT+TGG | 0.217996 | 7_3:+45900938 | Msa1106310:three_prime_UTR |
| TTTCCAGTTATTAGAATCTT+TGG | 0.232137 | 7_3:-45899344 | None:intergenic |
| CTGTATATTTACCGTTATAT+TGG | 0.237011 | 7_3:-45900736 | None:intergenic |
| CCTGGAAGTGGTTCTCCTTC+AGG | 0.245926 | 7_3:-45899401 | None:intergenic |
| GAAATTTGATCTTGTTTCTT+GGG | 0.259933 | 7_3:+45900939 | Msa1106310:three_prime_UTR |
| TACCATTTATCCATGCAAAA+TGG | 0.282943 | 7_3:-45901019 | None:intergenic |
| AAACTGAAAACCAAATTTCT+TGG | 0.288124 | 7_3:+45898250 | Msa1106310:CDS |
| CTAGAAGCAGTAGTTTGTTT+AGG | 0.290686 | 7_3:-45895732 | None:intergenic |
| AGATTCTAATAACTGGAAAA+TGG | 0.294958 | 7_3:+45899348 | Msa1106310:CDS |
| TTTCAACCGTGTGGCTGGTT+TGG | 0.299374 | 7_3:+45898941 | Msa1106310:CDS |
| TTCAACCGTGTGGCTGGTTT+GGG | 0.306787 | 7_3:+45898942 | Msa1106310:CDS |
| TCTGTCTCTAAATCCGTTAC+TGG | 0.307045 | 7_3:+45895813 | Msa1106310:CDS |
| AATTGCCAAGGATTGAATTC+TGG | 0.309835 | 7_3:-45900812 | None:intergenic |
| GTCTGATGGCAACAACTTCT+TGG | 0.311470 | 7_3:-45900399 | None:intergenic |
| TTCAACACCTTGGGGTGAAT+TGG | 0.318364 | 7_3:+45900706 | Msa1106310:CDS |
| AAACCATTCAATCCAATTCT+TGG | 0.319529 | 7_3:+45897904 | Msa1106310:CDS |
| AGAGACAGAAGTGCCAAAAT+TGG | 0.324196 | 7_3:-45895799 | None:intergenic |
| TGGTTTCCATGTTCGTTGAT+AGG | 0.324794 | 7_3:-45897887 | None:intergenic |
| TGATAATTTGGAGGCTGAAT+AGG | 0.326474 | 7_3:+45900835 | Msa1106310:CDS |
| TGCTCAAGGGCCATTCTATC+AGG | 0.333635 | 7_3:-45900434 | None:intergenic |
| GAACCAAAGATTCTAATAAC+TGG | 0.334792 | 7_3:+45899341 | Msa1106310:CDS |
| TGTTAAGCTTGTGCGCAAAA+TGG | 0.342311 | 7_3:-45900361 | None:intergenic |
| CCTGAAGGAGAACCACTTCC+AGG | 0.345218 | 7_3:+45899401 | Msa1106310:CDS |
| AGTTGCTGAAACTCCTAAAA+AGG | 0.350695 | 7_3:+45900322 | Msa1106310:CDS |
| ACCATCTAGGAGTGAACTTC+TGG | 0.351260 | 7_3:-45900661 | None:intergenic |
| TCTCATCCGCCATATCTAAT+AGG | 0.351722 | 7_3:-45897492 | None:intergenic |
| TACAGGAACGGGATAGTTAC+TGG | 0.352770 | 7_3:+45897230 | Msa1106310:intron |
| TTACCTGCTCTTCTCGTTGC+CGG | 0.355589 | 7_3:-45900474 | None:intergenic |
| TCATAAGTCTCGCCAAGAAT+TGG | 0.364216 | 7_3:-45897916 | None:intergenic |
| CTGGAAGTGGTTCTCCTTCA+GGG | 0.390296 | 7_3:-45899400 | None:intergenic |
| AGAGAACAGCGAAGAAAAGT+TGG | 0.400619 | 7_3:-45895483 | None:intergenic |
| ATAATAATAACAATAACTTT+AGG | 0.406226 | 7_3:-45895552 | None:intergenic |
| ACTTCTGGTTCTTCGCCTCT+CGG | 0.421507 | 7_3:-45900646 | None:intergenic |
| AAATTTGATCTTGTTTCTTG+GGG | 0.422553 | 7_3:+45900940 | Msa1106310:three_prime_UTR |
| ACGAACTTGGATTGATTCAC+CGG | 0.427585 | 7_3:+45898868 | Msa1106310:CDS |
| ACCAGAAGTTCACTCCTAGA+TGG | 0.427680 | 7_3:+45900660 | Msa1106310:CDS |
| TCAGCATGCCCGGCACTCAT+TGG | 0.428818 | 7_3:-45898196 | None:intergenic |
| TTTCAGTACTCCTGAGGGAT+TGG | 0.430340 | 7_3:+45896348 | Msa1106310:intron |
| GGAAGTAACTTCAACACCTT+GGG | 0.430491 | 7_3:+45900697 | Msa1106310:CDS |
| TCGCCAAGAATTGGATTGAA+TGG | 0.437574 | 7_3:-45897907 | None:intergenic |
| TTGAGCTCAGTGCCTGGAAG+TGG | 0.441386 | 7_3:-45899413 | None:intergenic |
| ATTCTTTGTAGCATCGTCAT+TGG | 0.443051 | 7_3:-45897322 | None:intergenic |
| CTTATATCTGAAAATAACTC+AGG | 0.443592 | 7_3:-45901158 | None:intergenic |
| AGATGGTGTGACGCTTGATT+TGG | 0.443745 | 7_3:+45898808 | Msa1106310:CDS |
| TGATAGAATGGCCCTTGAGC+AGG | 0.445077 | 7_3:+45900436 | Msa1106310:CDS |
| TCTTGGCGAGACTTATGAAA+TGG | 0.446172 | 7_3:+45897921 | Msa1106310:CDS |
| TTTGTGAAACACGCGCTTAG+TGG | 0.449157 | 7_3:-45895375 | None:intergenic |
| CTAAAGTTTAACGATCCAAA+TGG | 0.455145 | 7_3:-45895620 | None:intergenic |
| TGCTGAAGAGGAAGCTAAGA+AGG | 0.456916 | 7_3:+45896402 | Msa1106310:CDS |
| ACCTCTTTGAGCTCAGTGCC+TGG | 0.457360 | 7_3:-45899419 | None:intergenic |
| GTACTCTTACCTATTAGATA+TGG | 0.460527 | 7_3:+45897483 | Msa1106310:CDS |
| AACCAAATTTCTTGGCAACT+CGG | 0.462206 | 7_3:+45898258 | Msa1106310:CDS |
| GTCCTGACAAATTTGACTAC+GGG | 0.464111 | 7_3:+45898899 | Msa1106310:CDS |
| TCTGATGGCAACAACTTCTT+GGG | 0.469985 | 7_3:-45900398 | None:intergenic |
| TTGGAAGTTTACCAATATAA+CGG | 0.476790 | 7_3:+45900725 | Msa1106310:CDS |
| ACTGATTTCCATGGCACCAA+TGG | 0.479156 | 7_3:+45895707 | Msa1106310:exon |
| CTTTGCTAATGTATATTGTA+CGG | 0.479718 | 7_3:+45901063 | Msa1106310:three_prime_UTR |
| CAGGGTGACCTATCCGTGTC+CGG | 0.480998 | 7_3:+45900455 | Msa1106310:CDS |
| GTTAAGCTTGTGCGCAAAAT+GGG | 0.484686 | 7_3:-45900360 | None:intergenic |
| TTGGCAATTTGATAATTTGG+AGG | 0.489898 | 7_3:+45900826 | Msa1106310:CDS |
| GTAGTTTGTTTAGGATCCAT+TGG | 0.490818 | 7_3:-45895723 | None:intergenic |
| TTTAGGATCCATTGGTGCCA+TGG | 0.491784 | 7_3:-45895715 | None:intergenic |
| GAGAACAGCGAAGAAAAGTT+GGG | 0.492215 | 7_3:-45895482 | None:intergenic |
| GCATGCCCGGCACTCATTGG+AGG | 0.493510 | 7_3:-45898193 | None:intergenic |
| CAACGAGAGTACCTTCCAAC+AGG | 0.496349 | 7_3:-45898292 | None:intergenic |
| GCATATACAAGTCTCATGTA+TGG | 0.502072 | 7_3:-45897523 | None:intergenic |
| CATATCCATCCACTTCATAT+CGG | 0.502430 | 7_3:-45899301 | None:intergenic |
| GCTTCTAGTAGTAGTGGTGG+TGG | 0.508922 | 7_3:+45895747 | Msa1106310:CDS |
| TGTGCGCAAAATGGGTGTAT+TGG | 0.508928 | 7_3:-45900352 | None:intergenic |
| CATGTCATTTATAGCAGAGC+AGG | 0.509505 | 7_3:+45897957 | Msa1106310:CDS |
| CGAACTTGGATTGATTCACC+GGG | 0.510339 | 7_3:+45898869 | Msa1106310:CDS |
| TAAAGTTTAACGATCCAAAT+GGG | 0.516406 | 7_3:-45895619 | None:intergenic |
| ATCACCCTCCAATGAGTGCC+GGG | 0.517943 | 7_3:+45898188 | Msa1106310:CDS |
| CATCACCCTCCAATGAGTGC+CGG | 0.526096 | 7_3:+45898187 | Msa1106310:CDS |
| TCGGCTGATGTATATCCTGT+TGG | 0.527162 | 7_3:+45898277 | Msa1106310:CDS |
| GCAAAGAATATAGCTCTAGT+TGG | 0.531468 | 7_3:-45901046 | None:intergenic |
| ATAGACCAGAATTCAATCCT+TGG | 0.532358 | 7_3:+45900807 | Msa1106310:CDS |
| TCGTCTTCGTCCTGATAGAA+TGG | 0.535385 | 7_3:+45900424 | Msa1106310:CDS |
| TCTCGTTGCCGGACACGGAT+AGG | 0.536153 | 7_3:-45900463 | None:intergenic |
| GGTCCTGACAAATTTGACTA+CGG | 0.538233 | 7_3:+45898898 | Msa1106310:CDS |
| GCTCTTCTCGTTGCCGGACA+CGG | 0.540689 | 7_3:-45900468 | None:intergenic |
| AGGAAGTAACTTCAACACCT+TGG | 0.547809 | 7_3:+45900696 | Msa1106310:CDS |
| CATGCCCGGCACTCATTGGA+GGG | 0.549295 | 7_3:-45898192 | None:intergenic |
| AATGACGATGCTACAAAGAA+TGG | 0.551198 | 7_3:+45897324 | Msa1106310:CDS |
| AGGAACTGAAGATGCTGAAG+AGG | 0.553903 | 7_3:+45896390 | Msa1106310:CDS |
| TGTCCGGCAACGAGAAGAGC+AGG | 0.556678 | 7_3:+45900471 | Msa1106310:CDS |
| TCTGTCAGATCAAACCATCT+AGG | 0.561419 | 7_3:-45900674 | None:intergenic |
| AAGTCTCATGTATGGATCAT+CGG | 0.565263 | 7_3:-45897515 | None:intergenic |
| TTAACAACTTCCAATCCCTC+AGG | 0.574758 | 7_3:-45896358 | None:intergenic |
| TCCAAATTATCAAATTGCCA+AGG | 0.578229 | 7_3:-45900824 | None:intergenic |
| CTGTCTCTAAATCCGTTACT+GGG | 0.578382 | 7_3:+45895814 | Msa1106310:CDS |
| GATAGAATGGCCCTTGAGCA+GGG | 0.578871 | 7_3:+45900437 | Msa1106310:CDS |
| TTGGAAGTTGTTAATCCAGA+AGG | 0.580286 | 7_3:+45896367 | Msa1106310:CDS |
| TTATATCTGAAAATAACTCA+GGG | 0.582795 | 7_3:-45901157 | None:intergenic |
| CGGATAGGTCACCCTGCTCA+AGG | 0.585127 | 7_3:-45900448 | None:intergenic |
| GCTGGCCGATATGAAGTGGA+TGG | 0.593394 | 7_3:+45899296 | Msa1106310:CDS |
| AATTTGATCTTGTTTCTTGG+GGG | 0.593464 | 7_3:+45900941 | Msa1106310:three_prime_UTR |
| TATCAAGTTTGTGACCCTGA+AGG | 0.595390 | 7_3:+45899386 | Msa1106310:CDS |
| TGGCTCTGATATCACATCAA+TGG | 0.599652 | 7_3:+45897273 | Msa1106310:CDS |
| ACTATGCCTATCAACGAACA+TGG | 0.602963 | 7_3:+45897881 | Msa1106310:CDS |
| CTCTTACCTATTAGATATGG+CGG | 0.604056 | 7_3:+45897486 | Msa1106310:CDS |
| AGGCTGAATAGGCATTCTTG+TGG | 0.605046 | 7_3:+45900846 | Msa1106310:exon |
| GGACGAAGACGAGAGTCTGA+TGG | 0.607644 | 7_3:-45900413 | None:intergenic |
| GGATAGGTCACCCTGCTCAA+GGG | 0.609499 | 7_3:-45900447 | None:intergenic |
| GAAGTTGTTAATCCAGAAGG+AGG | 0.612155 | 7_3:+45896370 | Msa1106310:CDS |
| ACTACTGCTTCTAGTAGTAG+TGG | 0.614539 | 7_3:+45895741 | Msa1106310:CDS |
| CTGATGTATATCCTGTTGGA+AGG | 0.615522 | 7_3:+45898281 | Msa1106310:CDS |
| AAAATGATGCAAAAGTATGT+TGG | 0.618288 | 7_3:+45897253 | Msa1106310:CDS |
| GATGCTACAAAGAATGGCTG+AGG | 0.619746 | 7_3:+45897330 | Msa1106310:CDS |
| TAAACTTCCAATTCACCCCA+AGG | 0.625431 | 7_3:-45900713 | None:intergenic |
| CGTGTAACACTCAAAAGAGA+TGG | 0.628643 | 7_3:+45898791 | Msa1106310:CDS |
| GCTGAAGAGGAAGCTAAGAA+GGG | 0.629950 | 7_3:+45896403 | Msa1106310:CDS |
| CAGAGCTGGCCGATATGAAG+TGG | 0.634968 | 7_3:+45899292 | Msa1106310:intron |
| TTTGTCAGGACCATATCCCC+CGG | 0.638714 | 7_3:-45898887 | None:intergenic |
| TCCAGGCACTGAGCTCAAAG+AGG | 0.639649 | 7_3:+45899418 | Msa1106310:CDS |
| ATAAGAAACATACCCAGTAA+CGG | 0.644588 | 7_3:-45895826 | None:intergenic |
| AGGAAGCTAAGAAGGGACGA+TGG | 0.645802 | 7_3:+45896410 | Msa1106310:CDS |
| GAAGGGACGATGGAAAGATG+AGG | 0.648742 | 7_3:+45896420 | Msa1106310:CDS |
| ACTGCTTCTAGTAGTAGTGG+TGG | 0.656420 | 7_3:+45895744 | Msa1106310:CDS |
| TCCTGACAAATTTGACTACG+GGG | 0.660297 | 7_3:+45898900 | Msa1106310:CDS |
| AACTTGGATTGATTCACCGG+GGG | 0.663951 | 7_3:+45898871 | Msa1106310:CDS |
| TATCTGAAAATAACTCAGGG+TGG | 0.680261 | 7_3:-45901154 | None:intergenic |
| TCATACCCAAACCAGCCACA+CGG | 0.689650 | 7_3:-45898947 | None:intergenic |
| CCTGACAAATTTGACTACGG+GGG | 0.696732 | 7_3:+45898901 | Msa1106310:CDS |
| TAGATGGTTTGATCTGACAG+AGG | 0.699389 | 7_3:+45900676 | Msa1106310:CDS |
| CTATAAATGACATGCCACCG+TGG | 0.712560 | 7_3:-45897948 | None:intergenic |
| AGCTGAGAAGAGAAACCGAG+AGG | 0.718676 | 7_3:+45900631 | Msa1106310:CDS |
| GAACTTGGATTGATTCACCG+GGG | 0.721206 | 7_3:+45898870 | Msa1106310:CDS |
| ACTTATGAAATGGCTAACCA+CGG | 0.724007 | 7_3:+45897931 | Msa1106310:CDS |
| GAAGTAACTTCAACACCTTG+GGG | 0.735829 | 7_3:+45900698 | Msa1106310:CDS |
| TATGAAATGGCTAACCACGG+TGG | 0.752131 | 7_3:+45897934 | Msa1106310:CDS |
| CAGAACTATCTACAGCAGCG+CGG | 0.791276 | 7_3:-45900763 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAATAATAACAATAACTTT+AGG | - | chr7_3:45895555-45895574 | None:intergenic | 10.0% |
| !!! | TTTTTGTAATATTTTTTATG+TGG | + | chr7_3:45895883-45895902 | Msa1106310:intron | 10.0% |
| !!! | TTTTGTAATATTTTTTATGT+GGG | + | chr7_3:45895884-45895903 | Msa1106310:intron | 10.0% |
| !!! | TGATATGTATAATTTTTTAT+TGG | + | chr7_3:45896005-45896024 | Msa1106310:intron | 10.0% |
| !! | CAAAATGATTATATTATATT+AGG | - | chr7_3:45899176-45899195 | None:intergenic | 10.0% |
| !!! | ATGTAAATTGTATAATTTTA+AGG | + | chr7_3:45900201-45900220 | Msa1106310:intron | 10.0% |
| !!! | AGAATTTTTTTTGATGAAAT+TGG | - | chr7_3:45895648-45895667 | None:intergenic | 15.0% |
| !!! | AAAAATTCTCTTTTTTCAAT+TGG | + | chr7_3:45895659-45895678 | Msa1106310:five_prime_UTR | 15.0% |
| !!! | AAAATTCTCTTTTTTCAATT+GGG | + | chr7_3:45895660-45895679 | Msa1106310:five_prime_UTR | 15.0% |
| !! | TAATATTTGTGTTGTATTTA+TGG | + | chr7_3:45896602-45896621 | Msa1106310:intron | 15.0% |
| !! | TATTATAGAGACAAAAAAAT+TGG | + | chr7_3:45896761-45896780 | Msa1106310:intron | 15.0% |
| !! | AGTTAAGATTATTATATGAA+AGG | - | chr7_3:45898406-45898425 | None:intergenic | 15.0% |
| !!! | TTTCATCTTTTATTTAAGTT+TGG | + | chr7_3:45898529-45898548 | Msa1106310:intron | 15.0% |
| !!! | TTCATCTTTTATTTAAGTTT+GGG | + | chr7_3:45898530-45898549 | Msa1106310:intron | 15.0% |
| !! | AAAAAAATATTAATTGCCAA+TGG | + | chr7_3:45898581-45898600 | Msa1106310:intron | 15.0% |
| !!! | ATTTTAAACTGTGTATTATA+TGG | + | chr7_3:45898604-45898623 | Msa1106310:intron | 15.0% |
| !! | TTTAGTAACTTAAAGTTAAA+AGG | + | chr7_3:45899256-45899275 | Msa1106310:intron | 15.0% |
| !! | TTAGAATATATACTATACAA+AGG | + | chr7_3:45899769-45899788 | Msa1106310:intron | 15.0% |
| !! | TAGAATATATACTATACAAA+GGG | + | chr7_3:45899770-45899789 | Msa1106310:intron | 15.0% |
| !! | AACTTATGAACAAATTATTT+GGG | - | chr7_3:45900084-45900103 | None:intergenic | 15.0% |
| !! | TAACTTATGAACAAATTATT+TGG | - | chr7_3:45900085-45900104 | None:intergenic | 15.0% |
| !! | AAAATGACAGTTAAAAAAAT+AGG | - | chr7_3:45900879-45900898 | None:intergenic | 15.0% |
| !!! | ATTGAACAAGTTTGAAATTA+TGG | - | chr7_3:45895856-45895875 | None:intergenic | 20.0% |
| !!! | TTTTGATGTTTAAGTATTAG+TGG | + | chr7_3:45896219-45896238 | Msa1106310:intron | 20.0% |
| !! | GAATTATTTGAGTAATTTCT+TGG | + | chr7_3:45896254-45896273 | Msa1106310:intron | 20.0% |
| !!! | TGTCATGTATTTTTTTACAA+TGG | + | chr7_3:45898061-45898080 | Msa1106310:intron | 20.0% |
| !! | TTATAAAAACAAATTGCTAC+AGG | + | chr7_3:45898159-45898178 | Msa1106310:intron | 20.0% |
| !!! | ATGTATAAATAGCCTTAAAA+CGG | - | chr7_3:45898332-45898351 | None:intergenic | 20.0% |
| !! | TCAAAAGTAACAAAATGTAT+TGG | - | chr7_3:45898365-45898384 | None:intergenic | 20.0% |
| !!! | TCATCTTTTATTTAAGTTTG+GGG | + | chr7_3:45898531-45898550 | Msa1106310:intron | 20.0% |
| !! | TTAAATTGAAGTACAACATA+CGG | - | chr7_3:45898641-45898660 | None:intergenic | 20.0% |
| !! | ATGTTGTACTTCAATTTAAT+CGG | + | chr7_3:45898642-45898661 | Msa1106310:intron | 20.0% |
| !!! | TGTTTGTTTTTTTGTAATGT+TGG | + | chr7_3:45898678-45898697 | Msa1106310:intron | 20.0% |
| !!! | AAAATTAGCAACTTGATTTT+TGG | + | chr7_3:45898845-45898864 | Msa1106310:CDS | 20.0% |
| !! | TTAAATTGGGATTATATAAC+AGG | + | chr7_3:45899657-45899676 | Msa1106310:intron | 20.0% |
| !!! | AAGAATTAGTTGATTCAATT+TGG | - | chr7_3:45899697-45899716 | None:intergenic | 20.0% |
| !! | TTTGTTTGAATTCTTAGTTA+TGG | + | chr7_3:45899743-45899762 | Msa1106310:intron | 20.0% |
| !!! | CTGTTTTTATCGTAAAAAAA+GGG | + | chr7_3:45899876-45899895 | Msa1106310:intron | 20.0% |
| !!! | CTTAAACTTATTTTTCAGTT+TGG | + | chr7_3:45900595-45900614 | Msa1106310:intron | 20.0% |
| ! | AGACGTTAGAAAAATCAAAA+GGG | - | chr7_3:45895407-45895426 | None:intergenic | 25.0% |
| ! | AAGACGTTAGAAAAATCAAA+AGG | - | chr7_3:45895408-45895427 | None:intergenic | 25.0% |
| ! | TAAAGTTTAACGATCCAAAT+GGG | - | chr7_3:45895622-45895641 | None:intergenic | 25.0% |
| !! | TTGGGTTTTCTATTTTCATA+AGG | + | chr7_3:45895678-45895697 | Msa1106310:five_prime_UTR | 25.0% |
| ! | AATGACCATCTTTCAAAATT+GGG | + | chr7_3:45895965-45895984 | Msa1106310:intron | 25.0% |
| !!! | AAAAACCCAATTTTGAAAGA+TGG | - | chr7_3:45895973-45895992 | None:intergenic | 25.0% |
| !!! | TATTGGTGTTATTAATACTC+CGG | + | chr7_3:45896022-45896041 | Msa1106310:intron | 25.0% |
| !! | TTTTACCTAGAAATCAAGTT+TGG | + | chr7_3:45896113-45896132 | Msa1106310:intron | 25.0% |
| !! | TAATTTCTTGGAGTTTTTGT+TGG | + | chr7_3:45896266-45896285 | Msa1106310:intron | 25.0% |
| ! | TTCATTCTTTCATTCCTTAT+TGG | - | chr7_3:45896700-45896719 | None:intergenic | 25.0% |
| !!! | TCTATTTTTGTTGTTAGAGA+TGG | + | chr7_3:45896786-45896805 | Msa1106310:intron | 25.0% |
| !!! | CTATTTTTGTTGTTAGAGAT+GGG | + | chr7_3:45896787-45896806 | Msa1106310:intron | 25.0% |
| !! | TAAAACAGTTTTCTCAATTG+CGG | + | chr7_3:45896880-45896899 | Msa1106310:intron | 25.0% |
| !!! | TACAAAGTTTTGTCAAATAG+CGG | - | chr7_3:45896968-45896987 | None:intergenic | 25.0% |
| ! | TAATATGTCATGCAAACAAA+TGG | + | chr7_3:45897075-45897094 | Msa1106310:intron | 25.0% |
| ! | GAATACATTTATCTATCTCA+TGG | + | chr7_3:45897113-45897132 | Msa1106310:intron | 25.0% |
| !! | AAAATGATGCAAAAGTATGT+TGG | + | chr7_3:45897253-45897272 | Msa1106310:CDS | 25.0% |
| ! | TGCTAAGTATTATCAAATTC+TGG | - | chr7_3:45897723-45897742 | None:intergenic | 25.0% |
| ! | AAAAAATACATGACAAAGAG+AGG | - | chr7_3:45898056-45898075 | None:intergenic | 25.0% |
| ! | AAACTGAAAACCAAATTTCT+TGG | + | chr7_3:45898250-45898269 | Msa1106310:CDS | 25.0% |
| !! | ATACACAGTTTAAAATCCAT+TGG | - | chr7_3:45898600-45898619 | None:intergenic | 25.0% |
| ! | AACTGTGTATTATATGGATA+AGG | + | chr7_3:45898610-45898629 | Msa1106310:intron | 25.0% |
| !!! | ATCAAGTTGCTAATTTTTGT+AGG | - | chr7_3:45898842-45898861 | None:intergenic | 25.0% |
| ! | GTAGAAATAAGCGATAATTT+AGG | - | chr7_3:45898982-45899001 | None:intergenic | 25.0% |
| ! | ATGCATAAATAAGAAGTTAC+TGG | - | chr7_3:45899076-45899095 | None:intergenic | 25.0% |
| !!! | CATTTCTTTTAGTTTACTTG+TGG | + | chr7_3:45899098-45899117 | Msa1106310:intron | 25.0% |
| ! | CATCATTTATCGCAAAAAAA+TGG | - | chr7_3:45899140-45899159 | None:intergenic | 25.0% |
| ! | TGAAACTAATACTTCACATA+TGG | - | chr7_3:45899230-45899249 | None:intergenic | 25.0% |
| ! | TTTCCAGTTATTAGAATCTT+TGG | - | chr7_3:45899347-45899366 | None:intergenic | 25.0% |
| ! | AGATTCTAATAACTGGAAAA+TGG | + | chr7_3:45899348-45899367 | Msa1106310:CDS | 25.0% |
| !! | ATCAAGTTAAATTTGACTTC+AGG | - | chr7_3:45899720-45899739 | None:intergenic | 25.0% |
| ! | ATTAAGATGTTAATCCAAAC+AGG | - | chr7_3:45899796-45899815 | None:intergenic | 25.0% |
| !!! | GCTGTTTTTATCGTAAAAAA+AGG | + | chr7_3:45899875-45899894 | Msa1106310:intron | 25.0% |
| ! | AACTGTTTCATATGAACAAT+AGG | + | chr7_3:45899933-45899952 | Msa1106310:intron | 25.0% |
| !! | TATTGGAATTTGTCCTTTTT+AGG | - | chr7_3:45900338-45900357 | None:intergenic | 25.0% |
| !!! | AAACTTATTTTTCAGTTTGG+AGG | + | chr7_3:45900598-45900617 | Msa1106310:intron | 25.0% |
| ! | TTGGAAGTTTACCAATATAA+CGG | + | chr7_3:45900725-45900744 | Msa1106310:CDS | 25.0% |
| ! | CTGTATATTTACCGTTATAT+TGG | - | chr7_3:45900739-45900758 | None:intergenic | 25.0% |
| !! | TGAAATTTGATCTTGTTTCT+TGG | + | chr7_3:45900938-45900957 | Msa1106310:three_prime_UTR | 25.0% |
| !! | GAAATTTGATCTTGTTTCTT+GGG | + | chr7_3:45900939-45900958 | Msa1106310:three_prime_UTR | 25.0% |
| !! | AAATTTGATCTTGTTTCTTG+GGG | + | chr7_3:45900940-45900959 | Msa1106310:three_prime_UTR | 25.0% |
| ! | CTTTGCTAATGTATATTGTA+CGG | + | chr7_3:45901063-45901082 | Msa1106310:three_prime_UTR | 25.0% |
| TTAGAAAAATCAAAAGGGGT+GGG | - | chr7_3:45895402-45895421 | None:intergenic | 30.0% | |
| GACGTTAGAAAAATCAAAAG+GGG | - | chr7_3:45895406-45895425 | None:intergenic | 30.0% | |
| !!! | GGCATATTTTAATACCCATT+TGG | + | chr7_3:45895605-45895624 | Msa1106310:five_prime_UTR | 30.0% |
| CTAAAGTTTAACGATCCAAA+TGG | - | chr7_3:45895623-45895642 | None:intergenic | 30.0% | |
| ATAAGAAACATACCCAGTAA+CGG | - | chr7_3:45895829-45895848 | None:intergenic | 30.0% | |
| ACTTCCATGATCTAGTAAAA+GGG | - | chr7_3:45895932-45895951 | None:intergenic | 30.0% | |
| GAATGACCATCTTTCAAAAT+TGG | + | chr7_3:45895964-45895983 | Msa1106310:intron | 30.0% | |
| ATCAGACTTTACTTACTGTT+GGG | - | chr7_3:45896084-45896103 | None:intergenic | 30.0% | |
| AGAATCCAAACTTGATTTCT+AGG | - | chr7_3:45896121-45896140 | None:intergenic | 30.0% | |
| TATAGAAGTCACCAATTACA+AGG | + | chr7_3:45896639-45896658 | Msa1106310:intron | 30.0% | |
| ATGAATGCAAACCTTGTAAT+TGG | - | chr7_3:45896653-45896672 | None:intergenic | 30.0% | |
| GTAAATTATGCTGACCAATA+AGG | + | chr7_3:45896683-45896702 | Msa1106310:intron | 30.0% | |
| !! | ACAAAGTTTTGTCAAATAGC+GGG | - | chr7_3:45896967-45896986 | None:intergenic | 30.0% |
| TACATTTATCTATCTCATGG+TGG | + | chr7_3:45897116-45897135 | Msa1106310:intron | 30.0% | |
| ATGTACAAAAGAACACTTGA+GGG | - | chr7_3:45897210-45897229 | None:intergenic | 30.0% | |
| AATGTACAAAAGAACACTTG+AGG | - | chr7_3:45897211-45897230 | None:intergenic | 30.0% | |
| ! | AGTGTTCTTTTGTACATTAC+AGG | + | chr7_3:45897213-45897232 | Msa1106310:intron | 30.0% |
| ! | TCTTTTGTACATTACAGGAA+CGG | + | chr7_3:45897218-45897237 | Msa1106310:intron | 30.0% |
| TTATCTAATTTCACAGCTCA+TGG | + | chr7_3:45897459-45897478 | Msa1106310:intron | 30.0% | |
| GTACTCTTACCTATTAGATA+TGG | + | chr7_3:45897483-45897502 | Msa1106310:CDS | 30.0% | |
| TATCTCACATACACAACATT+TGG | + | chr7_3:45897794-45897813 | Msa1106310:intron | 30.0% | |
| ATCTCACATACACAACATTT+GGG | + | chr7_3:45897795-45897814 | Msa1106310:intron | 30.0% | |
| AAACCATTCAATCCAATTCT+TGG | + | chr7_3:45897904-45897923 | Msa1106310:CDS | 30.0% | |
| ACTGAAGAAAGAAAATAAGC+AGG | - | chr7_3:45897995-45898014 | None:intergenic | 30.0% | |
| GCATGTAAAATTGGTGAAAT+CGG | - | chr7_3:45898034-45898053 | None:intergenic | 30.0% | |
| !!! | GTATTTTTTTACAATGGCTC+TGG | + | chr7_3:45898067-45898086 | Msa1106310:intron | 30.0% |
| GACAAAACAACAGTTAAAAG+AGG | + | chr7_3:45898479-45898498 | Msa1106310:intron | 30.0% | |
| TGTGTATTATATGGATAAGG+AGG | + | chr7_3:45898613-45898632 | Msa1106310:intron | 30.0% | |
| ! | AGTTGCTAATTTTTGTAGGT+GGG | - | chr7_3:45898838-45898857 | None:intergenic | 30.0% |
| ! | AAGTTGCTAATTTTTGTAGG+TGG | - | chr7_3:45898839-45898858 | None:intergenic | 30.0% |
| GAACCAAAGATTCTAATAAC+TGG | + | chr7_3:45899341-45899360 | Msa1106310:CDS | 30.0% | |
| !!! | ATGCTTTGGAAACAACTTTT+AGG | + | chr7_3:45899580-45899599 | Msa1106310:intron | 30.0% |
| !! | TGCTTTGGAGATGATTAAAT+TGG | + | chr7_3:45899643-45899662 | Msa1106310:intron | 30.0% |
| !! | GCTTTGGAGATGATTAAATT+GGG | + | chr7_3:45899644-45899663 | Msa1106310:intron | 30.0% |
| ! | TAGTTGATTCAATTTGGCTA+CGG | - | chr7_3:45899691-45899710 | None:intergenic | 30.0% |
| CATCTTAATTAAGCGCTTAT+AGG | + | chr7_3:45899807-45899826 | Msa1106310:intron | 30.0% | |
| TTCTGTAGTCAGAGAAAATA+TGG | + | chr7_3:45899907-45899926 | Msa1106310:intron | 30.0% | |
| TACAAACCAAAGATGTCAAA+AGG | + | chr7_3:45900538-45900557 | Msa1106310:intron | 30.0% | |
| ACAAACCAAAGATGTCAAAA+GGG | + | chr7_3:45900539-45900558 | Msa1106310:intron | 30.0% | |
| ! | TTGAATTCTGGTCTATTTTC+AGG | - | chr7_3:45900803-45900822 | None:intergenic | 30.0% |
| ! | TCCTTGGCAATTTGATAATT+TGG | + | chr7_3:45900823-45900842 | Msa1106310:CDS | 30.0% |
| TCCAAATTATCAAATTGCCA+AGG | - | chr7_3:45900827-45900846 | None:intergenic | 30.0% | |
| ! | TTGGCAATTTGATAATTTGG+AGG | + | chr7_3:45900826-45900845 | Msa1106310:CDS | 30.0% |
| ! | AATTTGATCTTGTTTCTTGG+GGG | + | chr7_3:45900941-45900960 | Msa1106310:three_prime_UTR | 30.0% |
| ! | TTAGTTCAATCCATTTTGCA+TGG | + | chr7_3:45901009-45901028 | Msa1106310:three_prime_UTR | 30.0% |
| ! | ATCCATTTTGCATGGATAAA+TGG | + | chr7_3:45901017-45901036 | Msa1106310:three_prime_UTR | 30.0% |
| TACCATTTATCCATGCAAAA+TGG | - | chr7_3:45901022-45901041 | None:intergenic | 30.0% | |
| TAGAAAAATCAAAAGGGGTG+GGG | - | chr7_3:45895401-45895420 | None:intergenic | 35.0% | |
| GTTAGAAAAATCAAAAGGGG+TGG | - | chr7_3:45895403-45895422 | None:intergenic | 35.0% | |
| ! | GAAAAGTTGGGATTTTTCGT+TGG | - | chr7_3:45895473-45895492 | None:intergenic | 35.0% |
| !!! | AGGTTTTTCACTGATTTCCA+TGG | + | chr7_3:45895698-45895717 | Msa1106310:exon | 35.0% |
| !! | GTAGTTTGTTTAGGATCCAT+TGG | - | chr7_3:45895726-45895745 | None:intergenic | 35.0% |
| !! | CTAGAAGCAGTAGTTTGTTT+AGG | - | chr7_3:45895735-45895754 | None:intergenic | 35.0% |
| ! | GCTTCAACTTTCTCCAATTT+TGG | + | chr7_3:45895786-45895805 | Msa1106310:CDS | 35.0% |
| ! | TTTCCCCTTTTACTAGATCA+TGG | + | chr7_3:45895925-45895944 | Msa1106310:intron | 35.0% |
| CTTCCATGATCTAGTAAAAG+GGG | - | chr7_3:45895931-45895950 | None:intergenic | 35.0% | |
| CACTTCCATGATCTAGTAAA+AGG | - | chr7_3:45895933-45895952 | None:intergenic | 35.0% | |
| GATCAGACTTTACTTACTGT+TGG | - | chr7_3:45896085-45896104 | None:intergenic | 35.0% | |
| !! | TCTTGGAGTTTTTGTTGGTT+TGG | + | chr7_3:45896271-45896290 | Msa1106310:intron | 35.0% |
| ! | TTGATTTTCAGTACTCCTGA+GGG | + | chr7_3:45896343-45896362 | Msa1106310:intron | 35.0% |
| TTGGAAGTTGTTAATCCAGA+AGG | + | chr7_3:45896367-45896386 | Msa1106310:CDS | 35.0% | |
| GGAATGTGCATATTGAAACA+TGG | + | chr7_3:45896808-45896827 | Msa1106310:intron | 35.0% | |
| TATGTCATGCAAACAAATGG+TGG | + | chr7_3:45897078-45897097 | Msa1106310:intron | 35.0% | |
| ! | TTTATCTATCTCATGGTGGA+TGG | + | chr7_3:45897120-45897139 | Msa1106310:intron | 35.0% |
| !! | TTATCTATCTCATGGTGGAT+GGG | + | chr7_3:45897121-45897140 | Msa1106310:intron | 35.0% |
| ! | CTTTTGTACATTACAGGAAC+GGG | + | chr7_3:45897219-45897238 | Msa1106310:intron | 35.0% |
| ! | ATTGGCTCAAAAACGATAAC+TGG | - | chr7_3:45897307-45897326 | None:intergenic | 35.0% |
| ATTCTTTGTAGCATCGTCAT+TGG | - | chr7_3:45897325-45897344 | None:intergenic | 35.0% | |
| AATGACGATGCTACAAAGAA+TGG | + | chr7_3:45897324-45897343 | Msa1106310:CDS | 35.0% | |
| CTCTTACCTATTAGATATGG+CGG | + | chr7_3:45897486-45897505 | Msa1106310:CDS | 35.0% | |
| AAGTCTCATGTATGGATCAT+CGG | - | chr7_3:45897518-45897537 | None:intergenic | 35.0% | |
| GCATATACAAGTCTCATGTA+TGG | - | chr7_3:45897526-45897545 | None:intergenic | 35.0% | |
| TGGTTAATACTGTAGTGTAG+CGG | - | chr7_3:45897703-45897722 | None:intergenic | 35.0% | |
| ! | GATACAGTGTAGTGGAATTT+AGG | - | chr7_3:45897778-45897797 | None:intergenic | 35.0% |
| !! | TGCTGCAAAAAGCATCTATA+AGG | - | chr7_3:45897842-45897861 | None:intergenic | 35.0% |
| ACTTATGAAATGGCTAACCA+CGG | + | chr7_3:45897931-45897950 | Msa1106310:CDS | 35.0% | |
| ! | CAAAGAGAGGCATGTAAAAT+TGG | - | chr7_3:45898043-45898062 | None:intergenic | 35.0% |
| AACCAAATTTCTTGGCAACT+CGG | + | chr7_3:45898258-45898277 | Msa1106310:CDS | 35.0% | |
| CCTTAAAACGGCAACTAAAA+TGG | - | chr7_3:45898320-45898339 | None:intergenic | 35.0% | |
| !!! | CCATTTTAGTTGCCGTTTTA+AGG | + | chr7_3:45898317-45898336 | Msa1106310:intron | 35.0% |
| TCTCTGCAATAAGTTGTTCA+AGG | + | chr7_3:45898449-45898468 | Msa1106310:intron | 35.0% | |
| AGAATAAGTATTACACCCTC+AGG | - | chr7_3:45898506-45898525 | None:intergenic | 35.0% | |
| TTAAGTTTGGGGATTGTTAG+TGG | + | chr7_3:45898542-45898561 | Msa1106310:intron | 35.0% | |
| ! | TTGCTAATTTTTGTAGGTGG+GGG | - | chr7_3:45898836-45898855 | None:intergenic | 35.0% |
| ! | GTTGCTAATTTTTGTAGGTG+GGG | - | chr7_3:45898837-45898856 | None:intergenic | 35.0% |
| !! | ACTTGATTTTTGGACGAACT+TGG | + | chr7_3:45898855-45898874 | Msa1106310:CDS | 35.0% |
| CATATCCATCCACTTCATAT+CGG | - | chr7_3:45899304-45899323 | None:intergenic | 35.0% | |
| CAACTCTTTCATCGATGTTA+TGG | + | chr7_3:45899450-45899469 | Msa1106310:intron | 35.0% | |
| ! | ATCTAAAAGAGTGTGCTGTT+AGG | - | chr7_3:45899498-45899517 | None:intergenic | 35.0% |
| TCATTAAGCCTGATATGCTT+TGG | + | chr7_3:45899566-45899585 | Msa1106310:intron | 35.0% | |
| ! | AGTTGTTTCCAAAGCATATC+AGG | - | chr7_3:45899577-45899596 | None:intergenic | 35.0% |
| TTGCAAAGCATATGATGCTT+TGG | + | chr7_3:45899628-45899647 | Msa1106310:intron | 35.0% | |
| ! | AGTTGATTCAATTTGGCTAC+GGG | - | chr7_3:45899690-45899709 | None:intergenic | 35.0% |
| TAATGCTGATACGCTTTCTA+AGG | - | chr7_3:45899975-45899994 | None:intergenic | 35.0% | |
| CTACTAACACAAGCATTTGA+CGG | - | chr7_3:45900056-45900075 | None:intergenic | 35.0% | |
| AGTTGCTGAAACTCCTAAAA+AGG | + | chr7_3:45900322-45900341 | Msa1106310:CDS | 35.0% | |
| !! | ACATCTTTGGTTTGTAGAGA+GGG | - | chr7_3:45900534-45900553 | None:intergenic | 35.0% |
| CAAACCAAAGATGTCAAAAG+GGG | + | chr7_3:45900540-45900559 | Msa1106310:intron | 35.0% | |
| AAACCAAAGATGTCAAAAGG+GGG | + | chr7_3:45900541-45900560 | Msa1106310:intron | 35.0% | |
| !! | TATTTTTCAGTTTGGAGGAG+AGG | + | chr7_3:45900603-45900622 | Msa1106310:intron | 35.0% |
| ATAGACCAGAATTCAATCCT+TGG | + | chr7_3:45900807-45900826 | Msa1106310:CDS | 35.0% | |
| AATTGCCAAGGATTGAATTC+TGG | - | chr7_3:45900815-45900834 | None:intergenic | 35.0% | |
| TGATAATTTGGAGGCTGAAT+AGG | + | chr7_3:45900835-45900854 | Msa1106310:CDS | 35.0% | |
| !! | GCAAAGAATATAGCTCTAGT+TGG | - | chr7_3:45901049-45901068 | None:intergenic | 35.0% |
| ! | AAGTTGGGATTTTTCGTTGG+CGG | - | chr7_3:45895470-45895489 | None:intergenic | 40.0% |
| GAGAACAGCGAAGAAAAGTT+GGG | - | chr7_3:45895485-45895504 | None:intergenic | 40.0% | |
| AGAGAACAGCGAAGAAAAGT+TGG | - | chr7_3:45895486-45895505 | None:intergenic | 40.0% | |
| ACTACTGCTTCTAGTAGTAG+TGG | + | chr7_3:45895741-45895760 | Msa1106310:CDS | 40.0% | |
| !! | AGAGACAGAAGTGCCAAAAT+TGG | - | chr7_3:45895802-45895821 | None:intergenic | 40.0% |
| TCTGTCTCTAAATCCGTTAC+TGG | + | chr7_3:45895813-45895832 | Msa1106310:CDS | 40.0% | |
| CTGTCTCTAAATCCGTTACT+GGG | + | chr7_3:45895814-45895833 | Msa1106310:CDS | 40.0% | |
| GAACCTGGTAATTCAGAGTT+CGG | + | chr7_3:45896057-45896076 | Msa1106310:intron | 40.0% | |
| AACCTGGTAATTCAGAGTTC+GGG | + | chr7_3:45896058-45896077 | Msa1106310:intron | 40.0% | |
| !! | GTTGATTTTCAGTACTCCTG+AGG | + | chr7_3:45896342-45896361 | Msa1106310:intron | 40.0% |
| TTAACAACTTCCAATCCCTC+AGG | - | chr7_3:45896361-45896380 | None:intergenic | 40.0% | |
| GAAGTTGTTAATCCAGAAGG+AGG | + | chr7_3:45896370-45896389 | Msa1106310:CDS | 40.0% | |
| TGTTAGTGTCAGTGCTTCAT+AGG | - | chr7_3:45896463-45896482 | None:intergenic | 40.0% | |
| ! | TTTCAGATTGAAGGTGTGTC+AGG | - | chr7_3:45896559-45896578 | None:intergenic | 40.0% |
| ! | GCATCGACATTTCAGATTGA+AGG | - | chr7_3:45896568-45896587 | None:intergenic | 40.0% |
| GAATCTATCAAGATCCACTG+TGG | + | chr7_3:45896717-45896736 | Msa1106310:intron | 40.0% | |
| GATTACTTTCATCACCACAG+TGG | - | chr7_3:45896734-45896753 | None:intergenic | 40.0% | |
| TTGTACGAAACATCGTATCG+CGG | + | chr7_3:45896983-45897002 | Msa1106310:intron | 40.0% | |
| !! | TGGCTCTGATATCACATCAA+TGG | + | chr7_3:45897273-45897292 | Msa1106310:CDS | 40.0% |
| TCTCATCCGCCATATCTAAT+AGG | - | chr7_3:45897495-45897514 | None:intergenic | 40.0% | |
| GAGAGTGAAATGATGCTTAC+AGG | - | chr7_3:45897548-45897567 | None:intergenic | 40.0% | |
| ! | AGGTGAACAACTATTTTCCG+CGG | - | chr7_3:45897758-45897777 | None:intergenic | 40.0% |
| GTATGTGAGATACAGTGTAG+TGG | - | chr7_3:45897786-45897805 | None:intergenic | 40.0% | |
| ACATTTGGGCATACATTGCA+TGG | + | chr7_3:45897809-45897828 | Msa1106310:intron | 40.0% | |
| ACTATGCCTATCAACGAACA+TGG | + | chr7_3:45897881-45897900 | Msa1106310:CDS | 40.0% | |
| TGGTTTCCATGTTCGTTGAT+AGG | - | chr7_3:45897890-45897909 | None:intergenic | 40.0% | |
| TCGCCAAGAATTGGATTGAA+TGG | - | chr7_3:45897910-45897929 | None:intergenic | 40.0% | |
| TCATAAGTCTCGCCAAGAAT+TGG | - | chr7_3:45897919-45897938 | None:intergenic | 40.0% | |
| TCTTGGCGAGACTTATGAAA+TGG | + | chr7_3:45897921-45897940 | Msa1106310:CDS | 40.0% | |
| ! | CATGTCATTTATAGCAGAGC+AGG | + | chr7_3:45897957-45897976 | Msa1106310:CDS | 40.0% |
| ! | ATGTTCATTTTCAGCATGCC+CGG | - | chr7_3:45898209-45898228 | None:intergenic | 40.0% |
| CTGATGTATATCCTGTTGGA+AGG | + | chr7_3:45898281-45898300 | Msa1106310:CDS | 40.0% | |
| ATTGCAGAGAGAGGAATATG+TGG | - | chr7_3:45898439-45898458 | None:intergenic | 40.0% | |
| GAACAACTTATTGCAGAGAG+AGG | - | chr7_3:45898448-45898467 | None:intergenic | 40.0% | |
| AACAGTTAAAAGAGGACCTG+AGG | + | chr7_3:45898487-45898506 | Msa1106310:intron | 40.0% | |
| ACAGTTAAAAGAGGACCTGA+GGG | + | chr7_3:45898488-45898507 | Msa1106310:intron | 40.0% | |
| TAAACGCGCTACTACTTATC+TGG | + | chr7_3:45898758-45898777 | Msa1106310:intron | 40.0% | |
| CGTGTAACACTCAAAAGAGA+TGG | + | chr7_3:45898791-45898810 | Msa1106310:CDS | 40.0% | |
| ! | ACGAACTTGGATTGATTCAC+CGG | + | chr7_3:45898868-45898887 | Msa1106310:CDS | 40.0% |
| GGTCCTGACAAATTTGACTA+CGG | + | chr7_3:45898898-45898917 | Msa1106310:CDS | 40.0% | |
| GTCCTGACAAATTTGACTAC+GGG | + | chr7_3:45898899-45898918 | Msa1106310:CDS | 40.0% | |
| TCCTGACAAATTTGACTACG+GGG | + | chr7_3:45898900-45898919 | Msa1106310:CDS | 40.0% | |
| !!! | GTGCTTTATTTTCAACCGTG+TGG | + | chr7_3:45898932-45898951 | Msa1106310:CDS | 40.0% |
| !! | TTTATTTTCAACCGTGTGGC+TGG | + | chr7_3:45898936-45898955 | Msa1106310:CDS | 40.0% |
| GTGCATATACTGTAGGTTAC+AGG | - | chr7_3:45899022-45899041 | None:intergenic | 40.0% | |
| GTAACCTACAGTATATGCAC+TGG | + | chr7_3:45899022-45899041 | Msa1106310:intron | 40.0% | |
| ! | GCATTTACATTTTGCAGAGC+TGG | + | chr7_3:45899278-45899297 | Msa1106310:intron | 40.0% |
| TATCAAGTTTGTGACCCTGA+AGG | + | chr7_3:45899386-45899405 | Msa1106310:CDS | 40.0% | |
| TACTATACAAAGGGCCTGTT+TGG | + | chr7_3:45899779-45899798 | Msa1106310:intron | 40.0% | |
| ACAAGCATTTGACGGTGTTT+GGG | - | chr7_3:45900048-45900067 | None:intergenic | 40.0% | |
| TGATGTATCGTATCCCTGTT+TGG | + | chr7_3:45900227-45900246 | Msa1106310:intron | 40.0% | |
| GCAGTAAATCACACCAAACA+GGG | - | chr7_3:45900243-45900262 | None:intergenic | 40.0% | |
| AGCAGTAAATCACACCAAAC+AGG | - | chr7_3:45900244-45900263 | None:intergenic | 40.0% | |
| ! | ATCAAGTTGTTCCATTCTGC+AGG | + | chr7_3:45900292-45900311 | Msa1106310:intron | 40.0% |
| TCTGATGGCAACAACTTCTT+GGG | - | chr7_3:45900401-45900420 | None:intergenic | 40.0% | |
| !! | GACATCTTTGGTTTGTAGAG+AGG | - | chr7_3:45900535-45900554 | None:intergenic | 40.0% |
| TCTGTCAGATCAAACCATCT+AGG | - | chr7_3:45900677-45900696 | None:intergenic | 40.0% | |
| TAGATGGTTTGATCTGACAG+AGG | + | chr7_3:45900676-45900695 | Msa1106310:CDS | 40.0% | |
| AGGAAGTAACTTCAACACCT+TGG | + | chr7_3:45900696-45900715 | Msa1106310:CDS | 40.0% | |
| GGAAGTAACTTCAACACCTT+GGG | + | chr7_3:45900697-45900716 | Msa1106310:CDS | 40.0% | |
| GAAGTAACTTCAACACCTTG+GGG | + | chr7_3:45900698-45900717 | Msa1106310:CDS | 40.0% | |
| TAAACTTCCAATTCACCCCA+AGG | - | chr7_3:45900716-45900735 | None:intergenic | 40.0% | |
| ! | ACTGATTTCCATGGCACCAA+TGG | + | chr7_3:45895707-45895726 | Msa1106310:exon | 45.0% |
| !! | TTTAGGATCCATTGGTGCCA+TGG | - | chr7_3:45895718-45895737 | None:intergenic | 45.0% |
| ACTGCTTCTAGTAGTAGTGG+TGG | + | chr7_3:45895744-45895763 | Msa1106310:CDS | 45.0% | |
| GTTATTAATACTCCGGCTGC+CGG | + | chr7_3:45896029-45896048 | Msa1106310:intron | 45.0% | |
| TTATTAATACTCCGGCTGCC+GGG | + | chr7_3:45896030-45896049 | Msa1106310:intron | 45.0% | |
| TTTCAGTACTCCTGAGGGAT+TGG | + | chr7_3:45896348-45896367 | Msa1106310:intron | 45.0% | |
| AGGAACTGAAGATGCTGAAG+AGG | + | chr7_3:45896390-45896409 | Msa1106310:CDS | 45.0% | |
| TGCTGAAGAGGAAGCTAAGA+AGG | + | chr7_3:45896402-45896421 | Msa1106310:CDS | 45.0% | |
| GCTGAAGAGGAAGCTAAGAA+GGG | + | chr7_3:45896403-45896422 | Msa1106310:CDS | 45.0% | |
| ACATGCAGAGAAGAGCTCAT+AGG | - | chr7_3:45896860-45896879 | None:intergenic | 45.0% | |
| GCAATTGCTTGTGGACATTG+CGG | - | chr7_3:45897048-45897067 | None:intergenic | 45.0% | |
| TGTCCACAAGCAATTGCAAG+CGG | + | chr7_3:45897051-45897070 | Msa1106310:intron | 45.0% | |
| TATCCGCTTGCAATTGCTTG+TGG | - | chr7_3:45897057-45897076 | None:intergenic | 45.0% | |
| TACAGGAACGGGATAGTTAC+TGG | + | chr7_3:45897230-45897249 | Msa1106310:intron | 45.0% | |
| GATGCTACAAAGAATGGCTG+AGG | + | chr7_3:45897330-45897349 | Msa1106310:CDS | 45.0% | |
| ! | CACACACACACACACACTTT+TGG | + | chr7_3:45897664-45897683 | Msa1106310:intron | 45.0% |
| TAGCACTAAATCACGTACCG+CGG | + | chr7_3:45897738-45897757 | Msa1106310:intron | 45.0% | |
| TATGAAATGGCTAACCACGG+TGG | + | chr7_3:45897934-45897953 | Msa1106310:CDS | 45.0% | |
| CTATAAATGACATGCCACCG+TGG | - | chr7_3:45897951-45897970 | None:intergenic | 45.0% | |
| AGCCGAGTTGCCAAGAAATT+TGG | - | chr7_3:45898263-45898282 | None:intergenic | 45.0% | |
| TCGGCTGATGTATATCCTGT+TGG | + | chr7_3:45898277-45898296 | Msa1106310:CDS | 45.0% | |
| GCTACTACTTATCTGGATGC+AGG | + | chr7_3:45898765-45898784 | Msa1106310:intron | 45.0% | |
| AGATGGTGTGACGCTTGATT+TGG | + | chr7_3:45898808-45898827 | Msa1106310:CDS | 45.0% | |
| ! | CGAACTTGGATTGATTCACC+GGG | + | chr7_3:45898869-45898888 | Msa1106310:CDS | 45.0% |
| ! | GAACTTGGATTGATTCACCG+GGG | + | chr7_3:45898870-45898889 | Msa1106310:CDS | 45.0% |
| ! | AACTTGGATTGATTCACCGG+GGG | + | chr7_3:45898871-45898890 | Msa1106310:CDS | 45.0% |
| CCTGACAAATTTGACTACGG+GGG | + | chr7_3:45898901-45898920 | Msa1106310:CDS | 45.0% | |
| CCATCCAGTGCATATACTGT+AGG | - | chr7_3:45899029-45899048 | None:intergenic | 45.0% | |
| CCTACAGTATATGCACTGGA+TGG | + | chr7_3:45899026-45899045 | Msa1106310:intron | 45.0% | |
| ! | TATGCACTGGATGGATTCCA+TGG | + | chr7_3:45899035-45899054 | Msa1106310:intron | 45.0% |
| ! | AGTTACTGGCTGCTACAGTA+TGG | - | chr7_3:45899062-45899081 | None:intergenic | 45.0% |
| CATCGATGTTATGGCCATAG+AGG | + | chr7_3:45899459-45899478 | Msa1106310:intron | 45.0% | |
| GCGATAGCATATCACCTCTA+TGG | - | chr7_3:45899476-45899495 | None:intergenic | 45.0% | |
| CACAAGCATTTGACGGTGTT+TGG | - | chr7_3:45900049-45900068 | None:intergenic | 45.0% | |
| CTGAAGACACTCTCAGTGTT+TGG | - | chr7_3:45900110-45900129 | None:intergenic | 45.0% | |
| !! | CAAACACTGAGAGTGTCTTC+AGG | + | chr7_3:45900108-45900127 | Msa1106310:intron | 45.0% |
| GTTGTTCCATTCTGCAGGTT+TGG | + | chr7_3:45900297-45900316 | Msa1106310:intron | 45.0% | |
| AACTCTCCAAACCTGCAGAA+TGG | - | chr7_3:45900306-45900325 | None:intergenic | 45.0% | |
| TGTGCGCAAAATGGGTGTAT+TGG | - | chr7_3:45900355-45900374 | None:intergenic | 45.0% | |
| GTCTGATGGCAACAACTTCT+TGG | - | chr7_3:45900402-45900421 | None:intergenic | 45.0% | |
| TCGTCTTCGTCCTGATAGAA+TGG | + | chr7_3:45900424-45900443 | Msa1106310:CDS | 45.0% | |
| ! | GAACCCCCTTTTGACATCTT+TGG | - | chr7_3:45900547-45900566 | None:intergenic | 45.0% |
| ACCAGAAGTTCACTCCTAGA+TGG | + | chr7_3:45900660-45900679 | Msa1106310:CDS | 45.0% | |
| ACCATCTAGGAGTGAACTTC+TGG | - | chr7_3:45900664-45900683 | None:intergenic | 45.0% | |
| TTCAACACCTTGGGGTGAAT+TGG | + | chr7_3:45900706-45900725 | Msa1106310:CDS | 45.0% | |
| AGGCTGAATAGGCATTCTTG+TGG | + | chr7_3:45900846-45900865 | Msa1106310:exon | 45.0% | |
| !!! | ATTATTTTATTTGATATTAT+TGG | + | chr7_3:45895584-45895603 | Msa1106310:five_prime_UTR | 5.0% |
| !! | AAAATGATTATATTATATTA+GGG | - | chr7_3:45899175-45899194 | None:intergenic | 5.0% |
| GCTTCTAGTAGTAGTGGTGG+TGG | + | chr7_3:45895747-45895766 | Msa1106310:CDS | 50.0% | |
| TATTAATACTCCGGCTGCCG+GGG | + | chr7_3:45896031-45896050 | Msa1106310:intron | 50.0% | |
| GAATTACCAGGTTCCTTCCC+CGG | - | chr7_3:45896051-45896070 | None:intergenic | 50.0% | |
| ACACATGCAGACGAGTCGTT+CGG | - | chr7_3:45896145-45896164 | None:intergenic | 50.0% | |
| GCATCTTCAGTTCCTCCTTC+TGG | - | chr7_3:45896385-45896404 | None:intergenic | 50.0% | |
| AGGAAGCTAAGAAGGGACGA+TGG | + | chr7_3:45896410-45896429 | Msa1106310:CDS | 50.0% | |
| GAAGGGACGATGGAAAGATG+AGG | + | chr7_3:45896420-45896439 | Msa1106310:CDS | 50.0% | |
| !! | TTGTCAAATAGCGGGTGCAG+TGG | - | chr7_3:45896959-45896978 | None:intergenic | 50.0% |
| !! | CAACGAGAGTACCTTCCAAC+AGG | - | chr7_3:45898295-45898314 | None:intergenic | 50.0% |
| ! | GATTGATTCACCGGGGGATA+TGG | + | chr7_3:45898877-45898896 | Msa1106310:CDS | 50.0% |
| TTTGTCAGGACCATATCCCC+CGG | - | chr7_3:45898890-45898909 | None:intergenic | 50.0% | |
| CCCCCGTAGTCAAATTTGTC+AGG | - | chr7_3:45898904-45898923 | None:intergenic | 50.0% | |
| ! | TTTCAACCGTGTGGCTGGTT+TGG | + | chr7_3:45898941-45898960 | Msa1106310:CDS | 50.0% |
| !! | TTCAACCGTGTGGCTGGTTT+GGG | + | chr7_3:45898942-45898961 | Msa1106310:CDS | 50.0% |
| TCATACCCAAACCAGCCACA+CGG | - | chr7_3:45898950-45898969 | None:intergenic | 50.0% | |
| CTGGAAGTGGTTCTCCTTCA+GGG | - | chr7_3:45899403-45899422 | None:intergenic | 50.0% | |
| ACGGTGTTTGGGAGAGCTTA+CGG | - | chr7_3:45900037-45900056 | None:intergenic | 50.0% | |
| TGCTCAAGGGCCATTCTATC+AGG | - | chr7_3:45900437-45900456 | None:intergenic | 50.0% | |
| TGATAGAATGGCCCTTGAGC+AGG | + | chr7_3:45900436-45900455 | Msa1106310:CDS | 50.0% | |
| GATAGAATGGCCCTTGAGCA+GGG | + | chr7_3:45900437-45900456 | Msa1106310:CDS | 50.0% | |
| TTACCTGCTCTTCTCGTTGC+CGG | - | chr7_3:45900477-45900496 | None:intergenic | 50.0% | |
| AGCTGAGAAGAGAAACCGAG+AGG | + | chr7_3:45900631-45900650 | Msa1106310:CDS | 50.0% | |
| !! | ACTTCTGGTTCTTCGCCTCT+CGG | - | chr7_3:45900649-45900668 | None:intergenic | 50.0% |
| CAGAACTATCTACAGCAGCG+CGG | - | chr7_3:45900766-45900785 | None:intergenic | 50.0% | |
| GGCCCGAACTCTGAATTACC+AGG | - | chr7_3:45896063-45896082 | None:intergenic | 55.0% | |
| CACATGCAGACGAGTCGTTC+GGG | - | chr7_3:45896144-45896163 | None:intergenic | 55.0% | |
| TTGTGGACATTGCGGCGCTA+TGG | - | chr7_3:45897040-45897059 | None:intergenic | 55.0% | |
| CATCACCCTCCAATGAGTGC+CGG | + | chr7_3:45898187-45898206 | Msa1106310:CDS | 55.0% | |
| ATCACCCTCCAATGAGTGCC+GGG | + | chr7_3:45898188-45898207 | Msa1106310:CDS | 55.0% | |
| GGCTGCTACAGTATGGACCA+TGG | - | chr7_3:45899055-45899074 | None:intergenic | 55.0% | |
| CAGAGCTGGCCGATATGAAG+TGG | + | chr7_3:45899292-45899311 | Msa1106310:intron | 55.0% | |
| GCTGGCCGATATGAAGTGGA+TGG | + | chr7_3:45899296-45899315 | Msa1106310:CDS | 55.0% | |
| CCTGGAAGTGGTTCTCCTTC+AGG | - | chr7_3:45899404-45899423 | None:intergenic | 55.0% | |
| CCTGAAGGAGAACCACTTCC+AGG | + | chr7_3:45899401-45899420 | Msa1106310:CDS | 55.0% | |
| TTGAGCTCAGTGCCTGGAAG+TGG | - | chr7_3:45899416-45899435 | None:intergenic | 55.0% | |
| !! | TCCAGGCACTGAGCTCAAAG+AGG | + | chr7_3:45899418-45899437 | Msa1106310:CDS | 55.0% |
| ACCTCTTTGAGCTCAGTGCC+TGG | - | chr7_3:45899422-45899441 | None:intergenic | 55.0% | |
| GGACGAAGACGAGAGTCTGA+TGG | - | chr7_3:45900416-45900435 | None:intergenic | 55.0% | |
| GGATAGGTCACCCTGCTCAA+GGG | - | chr7_3:45900450-45900469 | None:intergenic | 55.0% | |
| ATTGCGGCGCTATGGCGTAG+TGG | - | chr7_3:45897032-45897051 | None:intergenic | 60.0% | |
| CATGCCCGGCACTCATTGGA+GGG | - | chr7_3:45898195-45898214 | None:intergenic | 60.0% | |
| TCAGCATGCCCGGCACTCAT+TGG | - | chr7_3:45898199-45898218 | None:intergenic | 60.0% | |
| CGGATAGGTCACCCTGCTCA+AGG | - | chr7_3:45900451-45900470 | None:intergenic | 60.0% | |
| CAGGGTGACCTATCCGTGTC+CGG | + | chr7_3:45900455-45900474 | Msa1106310:CDS | 60.0% | |
| TCTCGTTGCCGGACACGGAT+AGG | - | chr7_3:45900466-45900485 | None:intergenic | 60.0% | |
| GCTCTTCTCGTTGCCGGACA+CGG | - | chr7_3:45900471-45900490 | None:intergenic | 60.0% | |
| TGTCCGGCAACGAGAAGAGC+AGG | + | chr7_3:45900471-45900490 | Msa1106310:CDS | 60.0% | |
| AATACTCCGGCTGCCGGGGA+AGG | + | chr7_3:45896035-45896054 | Msa1106310:intron | 65.0% | |
| GCATGCCCGGCACTCATTGG+AGG | - | chr7_3:45898196-45898215 | None:intergenic | 65.0% | |
| CAGGTTCCTTCCCCGGCAGC+CGG | - | chr7_3:45896044-45896063 | None:intergenic | 70.0% | |
| CGGCTGCCGGGGAAGGAACC+TGG | + | chr7_3:45896042-45896061 | Msa1106310:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 45895376 | 45901171 | 45895376 | ID=Msa1106310;Name=Msa1106310 |
| chr7_3 | mRNA | 45895376 | 45901171 | 45895376 | ID=Msa1106310-mRNA-1;Parent=Msa1106310;Name=Msa1106310-mRNA-1;_AED=0.11;_eAED=0.11;_QI=341|1|1|1|1|1|10|315|460 |
| chr7_3 | exon | 45895376 | 45895835 | 45895376 | ID=Msa1106310-mRNA-1:exon:9437;Parent=Msa1106310-mRNA-1 |
| chr7_3 | exon | 45896354 | 45896441 | 45896354 | ID=Msa1106310-mRNA-1:exon:9438;Parent=Msa1106310-mRNA-1 |
| chr7_3 | exon | 45897235 | 45897351 | 45897235 | ID=Msa1106310-mRNA-1:exon:9439;Parent=Msa1106310-mRNA-1 |
| chr7_3 | exon | 45897475 | 45897547 | 45897475 | ID=Msa1106310-mRNA-1:exon:9440;Parent=Msa1106310-mRNA-1 |
| chr7_3 | exon | 45897860 | 45897978 | 45897860 | ID=Msa1106310-mRNA-1:exon:9441;Parent=Msa1106310-mRNA-1 |
| chr7_3 | exon | 45898181 | 45898302 | 45898181 | ID=Msa1106310-mRNA-1:exon:9442;Parent=Msa1106310-mRNA-1 |
| chr7_3 | exon | 45898787 | 45898963 | 45898787 | ID=Msa1106310-mRNA-1:exon:9443;Parent=Msa1106310-mRNA-1 |
| chr7_3 | exon | 45899295 | 45899439 | 45899295 | ID=Msa1106310-mRNA-1:exon:9444;Parent=Msa1106310-mRNA-1 |
| chr7_3 | exon | 45900314 | 45900492 | 45900314 | ID=Msa1106310-mRNA-1:exon:9445;Parent=Msa1106310-mRNA-1 |
| chr7_3 | exon | 45900613 | 45901171 | 45900613 | ID=Msa1106310-mRNA-1:exon:9446;Parent=Msa1106310-mRNA-1 |
| chr7_3 | five_prime_UTR | 45895376 | 45895716 | 45895376 | ID=Msa1106310-mRNA-1:five_prime_utr;Parent=Msa1106310-mRNA-1 |
| chr7_3 | CDS | 45895717 | 45895835 | 45895717 | ID=Msa1106310-mRNA-1:cds;Parent=Msa1106310-mRNA-1 |
| chr7_3 | CDS | 45896354 | 45896441 | 45896354 | ID=Msa1106310-mRNA-1:cds;Parent=Msa1106310-mRNA-1 |
| chr7_3 | CDS | 45897235 | 45897351 | 45897235 | ID=Msa1106310-mRNA-1:cds;Parent=Msa1106310-mRNA-1 |
| chr7_3 | CDS | 45897475 | 45897547 | 45897475 | ID=Msa1106310-mRNA-1:cds;Parent=Msa1106310-mRNA-1 |
| chr7_3 | CDS | 45897860 | 45897978 | 45897860 | ID=Msa1106310-mRNA-1:cds;Parent=Msa1106310-mRNA-1 |
| chr7_3 | CDS | 45898181 | 45898302 | 45898181 | ID=Msa1106310-mRNA-1:cds;Parent=Msa1106310-mRNA-1 |
| chr7_3 | CDS | 45898787 | 45898963 | 45898787 | ID=Msa1106310-mRNA-1:cds;Parent=Msa1106310-mRNA-1 |
| chr7_3 | CDS | 45899295 | 45899439 | 45899295 | ID=Msa1106310-mRNA-1:cds;Parent=Msa1106310-mRNA-1 |
| chr7_3 | CDS | 45900314 | 45900492 | 45900314 | ID=Msa1106310-mRNA-1:cds;Parent=Msa1106310-mRNA-1 |
| chr7_3 | CDS | 45900613 | 45900856 | 45900613 | ID=Msa1106310-mRNA-1:cds;Parent=Msa1106310-mRNA-1 |
| chr7_3 | three_prime_UTR | 45900857 | 45901171 | 45900857 | ID=Msa1106310-mRNA-1:three_prime_utr;Parent=Msa1106310-mRNA-1 |
| Gene Sequence |
| Protein sequence |
