Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1127630 | RHN49092.1 | 97.150 | 386 | 6 | 2 | 1 | 385 | 51 | 432 | 0.0 | 760 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1127630 | sp|Q9S6Z8|KCO5_ARATH | 68.000 | 325 | 98 | 1 | 63 | 381 | 80 | 404 | 2.21e-153 | 441 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1127630 | A0A396H780 | 97.150 | 386 | 6 | 2 | 1 | 385 | 51 | 432 | 0.0 | 760 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0017510 | Msa1127630 | 0.802923 | 4.456530e-49 | -8.615850e-47 |
| Msa0638280 | Msa1127630 | 0.820912 | 5.339043e-53 | -8.615850e-47 |
| Msa0638320 | Msa1127630 | 0.801427 | 9.049407e-49 | -8.615850e-47 |
| Msa0677270 | Msa1127630 | 0.801132 | 1.040146e-48 | -8.615850e-47 |
| Msa0157290 | Msa1127630 | 0.802674 | 5.015833e-49 | -8.615850e-47 |
| Msa0200950 | Msa1127630 | -0.800411 | 1.459834e-48 | -8.615850e-47 |
| Msa0215320 | Msa1127630 | -0.805236 | 1.471209e-49 | -8.615850e-47 |
| Msa0223410 | Msa1127630 | -0.801449 | 8.958492e-49 | -8.615850e-47 |
| Msa0226890 | Msa1127630 | 0.806963 | 6.372190e-50 | -8.615850e-47 |
| Msa0378080 | Msa1127630 | 0.810298 | 1.235785e-50 | -8.615850e-47 |
| Msa0442850 | Msa1127630 | 0.819694 | 1.015227e-52 | -8.615850e-47 |
| Msa0466390 | Msa1127630 | 0.810449 | 1.146345e-50 | -8.615850e-47 |
| Msa0470180 | Msa1127630 | 0.801594 | 8.363899e-49 | -8.615850e-47 |
| Msa0475580 | Msa1127630 | 0.805594 | 1.238238e-49 | -8.615850e-47 |
| Msa0990960 | Msa1127630 | 0.808513 | 2.984481e-50 | -8.615850e-47 |
| Msa1014540 | Msa1127630 | 0.816996 | 4.145939e-52 | -8.615850e-47 |
| Msa1040120 | Msa1127630 | 0.810835 | 9.461996e-51 | -8.615850e-47 |
| Msa1082910 | Msa1127630 | 0.842723 | 2.172543e-58 | -8.615850e-47 |
| Msa0241640 | Msa1127630 | 0.814528 | 1.471379e-51 | -8.615850e-47 |
| Msa0279700 | Msa1127630 | 0.835316 | 1.801577e-56 | -8.615850e-47 |
| Msa0279790 | Msa1127630 | 0.800609 | 1.329961e-48 | -8.615850e-47 |
| Msa0323080 | Msa1127630 | 0.805138 | 1.542609e-49 | -8.615850e-47 |
| Msa0344830 | Msa1127630 | 0.830789 | 2.409529e-55 | -8.615850e-47 |
| Msa0350990 | Msa1127630 | 0.802879 | 4.550089e-49 | -8.615850e-47 |
| Msa0358170 | Msa1127630 | 0.821860 | 3.225169e-53 | -8.615850e-47 |
| Msa1127580 | Msa1127630 | 0.990648 | 1.215186e-183 | -8.615850e-47 |
| Msa1127630 | Msa1186950 | -0.811333 | 7.378922e-51 | -8.615850e-47 |
| Msa1127630 | Msa1362880 | 0.801860 | 7.375457e-49 | -8.615850e-47 |
| Msa1127630 | Msa1369530 | 0.830064 | 3.624124e-55 | -8.615850e-47 |
| Msa1127630 | Msa1427830 | 0.802727 | 4.891267e-49 | -8.615850e-47 |
| Msa0518040 | Msa1127630 | 0.808540 | 2.946021e-50 | -8.615850e-47 |
| Msa0579290 | Msa1127630 | 0.807711 | 4.422352e-50 | -8.615850e-47 |
| Msa0579390 | Msa1127630 | 0.818904 | 1.536142e-52 | -8.615850e-47 |
| Msa0850960 | Msa1127630 | 0.803942 | 2.739519e-49 | -8.615850e-47 |
| Msa0880140 | Msa1127630 | 0.801315 | 9.540323e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1127630 | MtrunA17_Chr7g0270761 | 97.150 | 386 | 6 | 2 | 1 | 385 | 51 | 432 | 0.0 | 760 |
| Msa1127630 | MtrunA17_Chr4g0051871 | 62.654 | 324 | 116 | 3 | 63 | 385 | 99 | 418 | 2.44e-145 | 418 |
| Msa1127630 | MtrunA17_Chr5g0443241 | 41.108 | 343 | 195 | 6 | 5 | 343 | 3 | 342 | 4.24e-71 | 227 |
| Msa1127630 | MtrunA17_Chr4g0076241 | 37.288 | 295 | 177 | 3 | 84 | 376 | 55 | 343 | 2.22e-65 | 211 |
| Msa1127630 | MtrunA17_Chr5g0446411 | 32.551 | 341 | 219 | 3 | 50 | 385 | 14 | 348 | 3.08e-59 | 196 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1127630 | AT4G01840.1 | 68.000 | 325 | 98 | 1 | 63 | 381 | 80 | 404 | 2.25e-154 | 441 |
| Msa1127630 | AT4G18160.1 | 60.725 | 331 | 128 | 2 | 55 | 385 | 106 | 434 | 5.95e-133 | 388 |
| Msa1127630 | AT5G46370.1 | 57.764 | 322 | 129 | 2 | 69 | 385 | 115 | 434 | 6.61e-125 | 367 |
| Msa1127630 | AT1G02510.1 | 43.151 | 292 | 133 | 5 | 84 | 369 | 14 | 278 | 4.86e-68 | 216 |
| Msa1127630 | AT5G55630.2 | 37.024 | 289 | 178 | 3 | 97 | 385 | 73 | 357 | 1.04e-61 | 202 |
| Msa1127630 | AT5G55630.1 | 37.024 | 289 | 178 | 3 | 97 | 385 | 73 | 357 | 1.04e-61 | 202 |
| Msa1127630 | AT5G46360.1 | 51.534 | 163 | 76 | 1 | 223 | 385 | 100 | 259 | 1.73e-47 | 162 |
| Msa1127630 | AT5G46360.2 | 51.773 | 141 | 65 | 1 | 223 | 363 | 100 | 237 | 4.07e-40 | 143 |
Find 98 sgRNAs with CRISPR-Local
Find 187 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGGGTTGATTCTATTTATT+TGG | 0.161088 | 7_3:+79248007 | Msa1127630:CDS |
| GTTGGTCATTGTTGGGTTTA+AGG | 0.175814 | 7_3:-79247500 | None:intergenic |
| GTGGTGGTGGTTGTTGTTGT+AGG | 0.206072 | 7_3:-79247344 | None:intergenic |
| AGTTTAGTCATTGGTGTTAA+AGG | 0.245811 | 7_3:-79247717 | None:intergenic |
| GACGATTGTTTGCCGCAATT+TGG | 0.274052 | 7_3:+79248087 | Msa1127630:CDS |
| GGCTATGTCGTTGAAGGATT+TGG | 0.277283 | 7_3:-79247319 | None:intergenic |
| CCATTGACGAAAAGAAAATT+AGG | 0.287019 | 7_3:-79247239 | None:intergenic |
| ATGGAATTGGTTTGAGGTTT+GGG | 0.300185 | 7_3:-79247531 | None:intergenic |
| TGCAAATTTGTGATCAGTTC+AGG | 0.304949 | 7_3:+79249358 | Msa1127630:CDS |
| TGTACAGAAATTAGAATTGT+TGG | 0.316179 | 7_3:+79249551 | Msa1127630:three_prime_UTR |
| CCATCATTCGACAAGGCATT+TGG | 0.327849 | 7_3:+79247550 | Msa1127630:CDS |
| AGAATGAAGTCACTAGAAAA+TGG | 0.329601 | 7_3:+79249578 | Msa1127630:three_prime_UTR |
| CAAAAGGTAGGATGAGGATT+AGG | 0.342640 | 7_3:+79247901 | Msa1127630:CDS |
| GTGTATTGGTGTTGGGAGTT+TGG | 0.345263 | 7_3:+79247959 | Msa1127630:CDS |
| TAGGATGAGGATTAGGTTGA+AGG | 0.364579 | 7_3:+79247908 | Msa1127630:CDS |
| AAAAGATAAATGATGAGATT+TGG | 0.371428 | 7_3:-79247194 | None:intergenic |
| AGTTGAGGTTGGTCATTGTT+GGG | 0.371622 | 7_3:-79247507 | None:intergenic |
| CACCGACAGAGAGGTATATA+AGG | 0.374305 | 7_3:-79247578 | None:intergenic |
| GATGGAATTGGTTTGAGGTT+TGG | 0.376622 | 7_3:-79247532 | None:intergenic |
| GAAAGATGAAATAATGTTCC+TGG | 0.384243 | 7_3:-79249627 | None:intergenic |
| TTTCTACTTTGATGGTTGCT+AGG | 0.386044 | 7_3:+79248117 | Msa1127630:CDS |
| AAGTTGAGGTTGGTCATTGT+TGG | 0.391303 | 7_3:-79247508 | None:intergenic |
| GCTGCTGATATCAACAATAC+TGG | 0.402274 | 7_3:+79248236 | Msa1127630:CDS |
| TTGACGGTTGATTAGAAGAA+AGG | 0.404260 | 7_3:-79247274 | None:intergenic |
| TGTTATCTTCCCACAGTTAG+AGG | 0.407237 | 7_3:-79249391 | None:intergenic |
| AAATAAAGAGCATCAACAAC+AGG | 0.414802 | 7_3:-79247651 | None:intergenic |
| TTCTACTTTGATGGTTGCTA+GGG | 0.415421 | 7_3:+79248118 | Msa1127630:CDS |
| CATTGTTGGGTTTAAGGTGT+GGG | 0.422331 | 7_3:-79247494 | None:intergenic |
| GCAAAATGTACATGTATTGT+TGG | 0.430655 | 7_3:+79249517 | Msa1127630:three_prime_UTR |
| GAGGTTTGGGAAGTTGAGGT+TGG | 0.431644 | 7_3:-79247518 | None:intergenic |
| ACCATGTGTACAATTGGTTA+TGG | 0.433224 | 7_3:+79247684 | Msa1127630:CDS |
| TCACTAGAAAATGGATAGAA+AGG | 0.434013 | 7_3:+79249587 | Msa1127630:three_prime_UTR |
| TGGTGGTGGTTGTTGTTGTA+GGG | 0.435035 | 7_3:-79247343 | None:intergenic |
| TTGAAGGTTGGTTTAGCACT+TGG | 0.451400 | 7_3:+79247924 | Msa1127630:CDS |
| CCAAATGCCTTGTCGAATGA+TGG | 0.453277 | 7_3:-79247550 | None:intergenic |
| ATAGTCACCATGTGTACAAT+TGG | 0.454431 | 7_3:+79247678 | Msa1127630:CDS |
| TATATAGTTGATGTTGCAAA+AGG | 0.455329 | 7_3:+79247885 | Msa1127630:CDS |
| TTGTTGTGGAGTGAAGTTGA+TGG | 0.456292 | 7_3:-79247391 | None:intergenic |
| CCGGGCTTCAAATGGGTGCT+AGG | 0.460277 | 7_3:+79247841 | Msa1127630:CDS |
| GATGAGAAAATGGTTGTTGT+TGG | 0.463757 | 7_3:-79247419 | None:intergenic |
| TCGTTGAAGGATTTGGAAGA+AGG | 0.465006 | 7_3:-79247312 | None:intergenic |
| CGAATGATGGAATTGGTTTG+AGG | 0.466080 | 7_3:-79247537 | None:intergenic |
| TGTTGTTGGTGGTGTTGTTG+TGG | 0.469045 | 7_3:-79247405 | None:intergenic |
| ATGAGGATTAGGTTGAAGGT+TGG | 0.469655 | 7_3:+79247912 | Msa1127630:CDS |
| ACATAGGAGATTGGCTAAGA+AGG | 0.469957 | 7_3:+79248178 | Msa1127630:CDS |
| TAGGGTGGCTATGTCGTTGA+AGG | 0.470550 | 7_3:-79247325 | None:intergenic |
| GTTCCTGGTATATTCATGAT+AGG | 0.470657 | 7_3:-79249612 | None:intergenic |
| GATAACATTACCTCATCTCT+TGG | 0.475408 | 7_3:+79249407 | Msa1127630:CDS |
| CAAAATGTACATGTATTGTT+GGG | 0.483368 | 7_3:+79249518 | Msa1127630:three_prime_UTR |
| TCTGTTACAACGGTTGGTTA+TGG | 0.489001 | 7_3:+79248038 | Msa1127630:CDS |
| CAAGCAAAGAGTTTAGTCAT+TGG | 0.489008 | 7_3:-79247726 | None:intergenic |
| CTTCAAATGGGTGCTAGGGA+AGG | 0.490825 | 7_3:+79247846 | Msa1127630:CDS |
| GATGATTGTGGTGGTGGTGG+TGG | 0.499175 | 7_3:-79247357 | None:intergenic |
| TGGTGGTTGTTGTTGTAGGG+TGG | 0.501302 | 7_3:-79247340 | None:intergenic |
| AAGCTTGATCCCTCTAACTG+TGG | 0.503033 | 7_3:+79249381 | Msa1127630:CDS |
| GTTATGTCTGTTACAACGGT+TGG | 0.504121 | 7_3:+79248032 | Msa1127630:CDS |
| CCTAGCACCCATTTGAAGCC+CGG | 0.504757 | 7_3:-79247841 | None:intergenic |
| ATCTCAGATGATTGTGGTGG+TGG | 0.509487 | 7_3:-79247363 | None:intergenic |
| GGCTGTTATGTCTGTTACAA+CGG | 0.510559 | 7_3:+79248028 | Msa1127630:CDS |
| TTCAAATGGGTGCTAGGGAA+GGG | 0.511419 | 7_3:+79247847 | Msa1127630:CDS |
| TGATAGAAGACATAGGAGAT+TGG | 0.511668 | 7_3:+79248169 | Msa1127630:CDS |
| GAGAAATTACTATTGAAGAC+TGG | 0.520740 | 7_3:+79248210 | Msa1127630:CDS |
| AACATTACCTCATCTCTTGG+AGG | 0.522630 | 7_3:+79249410 | Msa1127630:CDS |
| TGACGGTTGATTAGAAGAAA+GGG | 0.523925 | 7_3:-79247273 | None:intergenic |
| TCATTGTTGGGTTTAAGGTG+TGG | 0.524950 | 7_3:-79247495 | None:intergenic |
| GAAGGATTTGGAAGAAGGGA+AGG | 0.526559 | 7_3:-79247307 | None:intergenic |
| CGTTGAAGGATTTGGAAGAA+GGG | 0.527448 | 7_3:-79247311 | None:intergenic |
| GAGAAAATGGTTGTTGTTGG+TGG | 0.528520 | 7_3:-79247416 | None:intergenic |
| TCAGATGATTGTGGTGGTGG+TGG | 0.528689 | 7_3:-79247360 | None:intergenic |
| GCCTTGTCGAATGATGGAAT+TGG | 0.531639 | 7_3:-79247544 | None:intergenic |
| GTTTGAGGTTTGGGAAGTTG+AGG | 0.533112 | 7_3:-79247522 | None:intergenic |
| CACTAGAAAATGGATAGAAA+GGG | 0.537281 | 7_3:+79249588 | Msa1127630:three_prime_UTR |
| CGGGCTTCAAATGGGTGCTA+GGG | 0.542060 | 7_3:+79247842 | Msa1127630:CDS |
| ATGTTGCAAAAGGTAGGATG+AGG | 0.545166 | 7_3:+79247895 | Msa1127630:CDS |
| TGGTTTAGCACTTGGTGTGG+TGG | 0.548065 | 7_3:+79247932 | Msa1127630:CDS |
| GTTATCTTCCCACAGTTAGA+GGG | 0.552658 | 7_3:-79249390 | None:intergenic |
| CTCCTTATATACCTCTCTGT+CGG | 0.565796 | 7_3:+79247576 | Msa1127630:CDS |
| AAGGATTTGGAAGAAGGGAA+GGG | 0.571773 | 7_3:-79247306 | None:intergenic |
| TTCATAGATATACTTCTAAG+TGG | 0.573910 | 7_3:+79247774 | Msa1127630:CDS |
| AGCTTGATCCCTCTAACTGT+GGG | 0.580855 | 7_3:+79249382 | Msa1127630:CDS |
| TACCTCATCTCTTGGAGGGT+AGG | 0.595849 | 7_3:+79249415 | Msa1127630:CDS |
| TCCATAACCAATTGTACACA+TGG | 0.601726 | 7_3:-79247685 | None:intergenic |
| CTAGAATTGATAGAAGACAT+AGG | 0.603969 | 7_3:+79248162 | Msa1127630:CDS |
| TAGTTGATGTTGCAAAAGGT+AGG | 0.608491 | 7_3:+79247889 | Msa1127630:CDS |
| TGTGGGAGAATGAACATGGC+TGG | 0.615636 | 7_3:-79247477 | None:intergenic |
| ATTGCGGCAAACAATCGTCC+CGG | 0.616820 | 7_3:-79248083 | None:intergenic |
| GATTGTATCTCAGATGATTG+TGG | 0.626746 | 7_3:-79247369 | None:intergenic |
| GGACCTATCATGAATATACC+AGG | 0.628206 | 7_3:+79249609 | Msa1127630:three_prime_UTR |
| GGTTGGTTTAGCACTTGGTG+TGG | 0.630070 | 7_3:+79247929 | Msa1127630:CDS |
| ACATTACCTCATCTCTTGGA+GGG | 0.633541 | 7_3:+79249411 | Msa1127630:CDS |
| GACCTACCCTCCAAGAGATG+AGG | 0.650185 | 7_3:-79249417 | None:intergenic |
| AATAAAGAGCATCAACAACA+GGG | 0.664300 | 7_3:-79247650 | None:intergenic |
| ACCAATTCCATCATTCGACA+AGG | 0.666542 | 7_3:+79247543 | Msa1127630:CDS |
| AGAAAACAACAACCAAATTG+CGG | 0.666954 | 7_3:-79248099 | None:intergenic |
| ACGAAAAGAAAATTAGGACA+TGG | 0.675064 | 7_3:-79247233 | None:intergenic |
| TGTATCTCAGATGATTGTGG+TGG | 0.681331 | 7_3:-79247366 | None:intergenic |
| AAGGTGTGGGAGAATGAACA+TGG | 0.713654 | 7_3:-79247481 | None:intergenic |
| ATATTATGACACCGACAGAG+AGG | 0.738363 | 7_3:-79247587 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATTAGAATATCATATTTA+TGG | - | chr7_3:79248857-79248876 | None:intergenic | 10.0% |
| !!! | TATTCAATTATTTTATCATA+TGG | + | chr7_3:79249196-79249215 | Msa1127630:intron | 10.0% |
| !! | TAATTAACTAATGATCTTAA+GGG | - | chr7_3:79248890-79248909 | None:intergenic | 15.0% |
| !! | AAAAGATAAATGATGAGATT+TGG | - | chr7_3:79247197-79247216 | None:intergenic | 20.0% |
| !!! | TTTACCCTCTTTTTAATTTT+AGG | + | chr7_3:79248283-79248302 | Msa1127630:intron | 20.0% |
| !! | TTGACCTAAAATTAAAAAGA+GGG | - | chr7_3:79248290-79248309 | None:intergenic | 20.0% |
| !! | TTTGACCTAAAATTAAAAAG+AGG | - | chr7_3:79248291-79248310 | None:intergenic | 20.0% |
| !! | AAATAAAAAAAACCTTGATG+CGG | + | chr7_3:79248648-79248667 | Msa1127630:intron | 20.0% |
| !! | AATTAACTAATGATCTTAAG+GGG | - | chr7_3:79248889-79248908 | None:intergenic | 20.0% |
| !! | GTAATTAACTAATGATCTTA+AGG | - | chr7_3:79248891-79248910 | None:intergenic | 20.0% |
| !! | CTTATTATTAAACTTGTGAT+TGG | + | chr7_3:79249082-79249101 | Msa1127630:intron | 20.0% |
| !!! | ATATGGTGTAGTTATTTTAA+AGG | + | chr7_3:79249213-79249232 | Msa1127630:intron | 20.0% |
| !!! | TTTTGTTTGTGATGAGAAAA+TGG | - | chr7_3:79247432-79247451 | None:intergenic | 25.0% |
| ! | TTCAACACAAAAAATTTCTC+TGG | + | chr7_3:79247615-79247634 | Msa1127630:CDS | 25.0% |
| ! | TTCATAGATATACTTCTAAG+TGG | + | chr7_3:79247774-79247793 | Msa1127630:CDS | 25.0% |
| !!! | TGGACTTGTTAATTTTGTTT+TGG | + | chr7_3:79247794-79247813 | Msa1127630:CDS | 25.0% |
| !! | TATATAGTTGATGTTGCAAA+AGG | + | chr7_3:79247885-79247904 | Msa1127630:CDS | 25.0% |
| !!! | TCAACAATACTGGTTTTATT+AGG | + | chr7_3:79248246-79248265 | Msa1127630:CDS | 25.0% |
| !! | AACATTTTGTTGCAATATCA+AGG | + | chr7_3:79248410-79248429 | Msa1127630:intron | 25.0% |
| !! | CATAATTTTCCATAATAGCA+GGG | - | chr7_3:79248577-79248596 | None:intergenic | 25.0% |
| ! | GCTTATGACTAAGAATATAT+TGG | - | chr7_3:79248980-79248999 | None:intergenic | 25.0% |
| !! | TTAATTCACATTAGCTTAGA+TGG | + | chr7_3:79249019-79249038 | Msa1127630:intron | 25.0% |
| !! | TAATTCACATTAGCTTAGAT+GGG | + | chr7_3:79249020-79249039 | Msa1127630:intron | 25.0% |
| ! | TATTAAACTTGTGATTGGTA+AGG | + | chr7_3:79249087-79249106 | Msa1127630:intron | 25.0% |
| ! | CAAAATGTACATGTATTGTT+GGG | + | chr7_3:79249518-79249537 | Msa1127630:three_prime_UTR | 25.0% |
| ! | TGTACAGAAATTAGAATTGT+TGG | + | chr7_3:79249551-79249570 | Msa1127630:three_prime_UTR | 25.0% |
| ACGAAAAGAAAATTAGGACA+TGG | - | chr7_3:79247236-79247255 | None:intergenic | 30.0% | |
| CCATTGACGAAAAGAAAATT+AGG | - | chr7_3:79247242-79247261 | None:intergenic | 30.0% | |
| ! | CCTAATTTTCTTTTCGTCAA+TGG | + | chr7_3:79247239-79247258 | Msa1127630:exon | 30.0% |
| !! | AATAAAGAGCATCAACAACA+GGG | - | chr7_3:79247653-79247672 | None:intergenic | 30.0% |
| !! | AAATAAAGAGCATCAACAAC+AGG | - | chr7_3:79247654-79247673 | None:intergenic | 30.0% |
| !! | AGTTTAGTCATTGGTGTTAA+AGG | - | chr7_3:79247720-79247739 | None:intergenic | 30.0% |
| !!! | TGCTTGTGTTTTTGTTTTAG+TGG | + | chr7_3:79247743-79247762 | Msa1127630:CDS | 30.0% |
| !!! | GCTTGTGTTTTTGTTTTAGT+GGG | + | chr7_3:79247744-79247763 | Msa1127630:CDS | 30.0% |
| !!! | GTTTTTGTTTTAGTGGGTTT+TGG | + | chr7_3:79247750-79247769 | Msa1127630:CDS | 30.0% |
| !! | CAAGAGAATACGATTTTAAC+CGG | + | chr7_3:79247822-79247841 | Msa1127630:CDS | 30.0% |
| !! | AAGAGAATACGATTTTAACC+GGG | + | chr7_3:79247823-79247842 | Msa1127630:CDS | 30.0% |
| !!! | TTTGGTTTTGTGTTTTGTTG+AGG | + | chr7_3:79247977-79247996 | Msa1127630:CDS | 30.0% |
| !!! | TTGGTTTTGTGTTTTGTTGA+GGG | + | chr7_3:79247978-79247997 | Msa1127630:CDS | 30.0% |
| !! | CTGGGTTGATTCTATTTATT+TGG | + | chr7_3:79248007-79248026 | Msa1127630:CDS | 30.0% |
| AGAAAACAACAACCAAATTG+CGG | - | chr7_3:79248102-79248121 | None:intergenic | 30.0% | |
| !!! | GTTGTTGTTTTCTACTTTGA+TGG | + | chr7_3:79248109-79248128 | Msa1127630:CDS | 30.0% |
| CTAGAATTGATAGAAGACAT+AGG | + | chr7_3:79248162-79248181 | Msa1127630:CDS | 30.0% | |
| GAGAAATTACTATTGAAGAC+TGG | + | chr7_3:79248210-79248229 | Msa1127630:CDS | 30.0% | |
| !! | AAATCCGTAGTTCTAAATTG+CGG | + | chr7_3:79248308-79248327 | Msa1127630:intron | 30.0% |
| ! | TATACCGCAATTTAGAACTA+CGG | - | chr7_3:79248315-79248334 | None:intergenic | 30.0% |
| GCGGTATATAATTGTAATTG+TGG | + | chr7_3:79248327-79248346 | Msa1127630:intron | 30.0% | |
| TAATTGTGGCTGTAATGTAA+AGG | + | chr7_3:79248341-79248360 | Msa1127630:intron | 30.0% | |
| AGCAATACACAAACAAAACA+TGG | + | chr7_3:79248491-79248510 | Msa1127630:intron | 30.0% | |
| ACATGAGTGGTTTATAATTG+TGG | + | chr7_3:79248522-79248541 | Msa1127630:intron | 30.0% | |
| ! | CCATAATTTTCCATAATAGC+AGG | - | chr7_3:79248578-79248597 | None:intergenic | 30.0% |
| CCTGCTATTATGGAAAATTA+TGG | + | chr7_3:79248575-79248594 | Msa1127630:intron | 30.0% | |
| GAATGTGAAATTACTACTTC+TGG | + | chr7_3:79248763-79248782 | Msa1127630:intron | 30.0% | |
| ACCAAACAAGAATACAACAT+TGG | + | chr7_3:79248828-79248847 | Msa1127630:intron | 30.0% | |
| TCCAATGTTGTATTCTTGTT+TGG | - | chr7_3:79248832-79248851 | None:intergenic | 30.0% | |
| !! | ATTTTCAAGCTGAAAGAGAT+GGG | + | chr7_3:79249312-79249331 | Msa1127630:CDS | 30.0% |
| GCAAAATGTACATGTATTGT+TGG | + | chr7_3:79249517-79249536 | Msa1127630:three_prime_UTR | 30.0% | |
| AGAATGAAGTCACTAGAAAA+TGG | + | chr7_3:79249578-79249597 | Msa1127630:three_prime_UTR | 30.0% | |
| TCACTAGAAAATGGATAGAA+AGG | + | chr7_3:79249587-79249606 | Msa1127630:three_prime_UTR | 30.0% | |
| CACTAGAAAATGGATAGAAA+GGG | + | chr7_3:79249588-79249607 | Msa1127630:three_prime_UTR | 30.0% | |
| GAAAGATGAAATAATGTTCC+TGG | - | chr7_3:79249630-79249649 | None:intergenic | 30.0% | |
| TGACGGTTGATTAGAAGAAA+GGG | - | chr7_3:79247276-79247295 | None:intergenic | 35.0% | |
| TTGACGGTTGATTAGAAGAA+AGG | - | chr7_3:79247277-79247296 | None:intergenic | 35.0% | |
| ! | GGAAGGGTTGTAAATTTTGA+CGG | - | chr7_3:79247293-79247312 | None:intergenic | 35.0% |
| GATTGTATCTCAGATGATTG+TGG | - | chr7_3:79247372-79247391 | None:intergenic | 35.0% | |
| GATGAGAAAATGGTTGTTGT+TGG | - | chr7_3:79247422-79247441 | None:intergenic | 35.0% | |
| !! | ATGGAATTGGTTTGAGGTTT+GGG | - | chr7_3:79247534-79247553 | None:intergenic | 35.0% |
| ATAGTCACCATGTGTACAAT+TGG | + | chr7_3:79247678-79247697 | Msa1127630:CDS | 35.0% | |
| ACCATGTGTACAATTGGTTA+TGG | + | chr7_3:79247684-79247703 | Msa1127630:CDS | 35.0% | |
| TCCATAACCAATTGTACACA+TGG | - | chr7_3:79247688-79247707 | None:intergenic | 35.0% | |
| CAAGCAAAGAGTTTAGTCAT+TGG | - | chr7_3:79247729-79247748 | None:intergenic | 35.0% | |
| !! | ATTTTAACCGGGCTTCAAAT+GGG | + | chr7_3:79247834-79247853 | Msa1127630:CDS | 35.0% |
| ! | TAGTTGATGTTGCAAAAGGT+AGG | + | chr7_3:79247889-79247908 | Msa1127630:CDS | 35.0% |
| !!! | TGGTTTTGTGTATTGGTGTT+GGG | + | chr7_3:79247952-79247971 | Msa1127630:CDS | 35.0% |
| ! | TTTTGTTGAGGGTTTAGACT+GGG | + | chr7_3:79247989-79248008 | Msa1127630:CDS | 35.0% |
| !!! | TAGAGCTTTTAAGACTCTTC+CGG | + | chr7_3:79248064-79248083 | Msa1127630:CDS | 35.0% |
| ! | TTTCTACTTTGATGGTTGCT+AGG | + | chr7_3:79248117-79248136 | Msa1127630:CDS | 35.0% |
| ! | TTCTACTTTGATGGTTGCTA+GGG | + | chr7_3:79248118-79248137 | Msa1127630:CDS | 35.0% |
| ! | TGCTAGGGCTTTTCTTTATT+TGG | + | chr7_3:79248133-79248152 | Msa1127630:CDS | 35.0% |
| TGATAGAAGACATAGGAGAT+TGG | + | chr7_3:79248169-79248188 | Msa1127630:CDS | 35.0% | |
| AAAGAGGGTAAAGAACTGTT+GGG | - | chr7_3:79248275-79248294 | None:intergenic | 35.0% | |
| AAAAGAGGGTAAAGAACTGT+TGG | - | chr7_3:79248276-79248295 | None:intergenic | 35.0% | |
| TTGCAACAACATTGCAATTG+CGG | + | chr7_3:79248376-79248395 | Msa1127630:intron | 35.0% | |
| TATCAAGGTTTGCAGTGTAA+CGG | + | chr7_3:79248425-79248444 | Msa1127630:intron | 35.0% | |
| ! | GGCAACTTCAATTTAGAACA+TGG | + | chr7_3:79248446-79248465 | Msa1127630:intron | 35.0% |
| CATGGTAATTTACACATGAG+TGG | + | chr7_3:79248509-79248528 | Msa1127630:intron | 35.0% | |
| CCACAATTATGGTTACATTG+CGG | + | chr7_3:79248617-79248636 | Msa1127630:intron | 35.0% | |
| TCTATCCACAATTGCAATTG+CGG | - | chr7_3:79248674-79248693 | None:intergenic | 35.0% | |
| !! | AAGACTAGTCTTATTGGTTC+TGG | - | chr7_3:79248738-79248757 | None:intergenic | 35.0% |
| !! | CTCACAAAGACTAGTCTTAT+TGG | - | chr7_3:79248744-79248763 | None:intergenic | 35.0% |
| ! | ACTTCTGGTAAAGTGCTAAT+TGG | + | chr7_3:79248778-79248797 | Msa1127630:intron | 35.0% |
| ! | CTTCTGGTAAAGTGCTAATT+GGG | + | chr7_3:79248779-79248798 | Msa1127630:intron | 35.0% |
| ! | TTCTGGTAAAGTGCTAATTG+GGG | + | chr7_3:79248780-79248799 | Msa1127630:intron | 35.0% |
| CAAGTTGCTATAATCATCTG+TGG | + | chr7_3:79248910-79248929 | Msa1127630:intron | 35.0% | |
| ATGCATCATAGTACACAAGT+AGG | + | chr7_3:79249136-79249155 | Msa1127630:intron | 35.0% | |
| TGCATCATAGTACACAAGTA+GGG | + | chr7_3:79249137-79249156 | Msa1127630:intron | 35.0% | |
| GAAAACAAAGTGAAGAAGGA+TGG | - | chr7_3:79249274-79249293 | None:intergenic | 35.0% | |
| TGCTGAAAACAAAGTGAAGA+AGG | - | chr7_3:79249278-79249297 | None:intergenic | 35.0% | |
| !! | GATTTTCAAGCTGAAAGAGA+TGG | + | chr7_3:79249311-79249330 | Msa1127630:CDS | 35.0% |
| TGCAAATTTGTGATCAGTTC+AGG | + | chr7_3:79249358-79249377 | Msa1127630:CDS | 35.0% | |
| GATAACATTACCTCATCTCT+TGG | + | chr7_3:79249407-79249426 | Msa1127630:CDS | 35.0% | |
| !!! | TGTTTTAGTGCAAAAGCTAG+TGG | + | chr7_3:79249465-79249484 | Msa1127630:three_prime_UTR | 35.0% |
| GTTCCTGGTATATTCATGAT+AGG | - | chr7_3:79249615-79249634 | None:intergenic | 35.0% | |
| AAGGATTTGGAAGAAGGGAA+GGG | - | chr7_3:79247309-79247328 | None:intergenic | 40.0% | |
| CGTTGAAGGATTTGGAAGAA+GGG | - | chr7_3:79247314-79247333 | None:intergenic | 40.0% | |
| TCGTTGAAGGATTTGGAAGA+AGG | - | chr7_3:79247315-79247334 | None:intergenic | 40.0% | |
| TGTATCTCAGATGATTGTGG+TGG | - | chr7_3:79247369-79247388 | None:intergenic | 40.0% | |
| TTGTTGTGGAGTGAAGTTGA+TGG | - | chr7_3:79247394-79247413 | None:intergenic | 40.0% | |
| ! | GAGAAAATGGTTGTTGTTGG+TGG | - | chr7_3:79247419-79247438 | None:intergenic | 40.0% |
| ! | CATTGTTGGGTTTAAGGTGT+GGG | - | chr7_3:79247497-79247516 | None:intergenic | 40.0% |
| ! | TCATTGTTGGGTTTAAGGTG+TGG | - | chr7_3:79247498-79247517 | None:intergenic | 40.0% |
| GTTGGTCATTGTTGGGTTTA+AGG | - | chr7_3:79247503-79247522 | None:intergenic | 40.0% | |
| ! | AGTTGAGGTTGGTCATTGTT+GGG | - | chr7_3:79247510-79247529 | None:intergenic | 40.0% |
| ! | AAGTTGAGGTTGGTCATTGT+TGG | - | chr7_3:79247511-79247530 | None:intergenic | 40.0% |
| !! | GATGGAATTGGTTTGAGGTT+TGG | - | chr7_3:79247535-79247554 | None:intergenic | 40.0% |
| !! | CGAATGATGGAATTGGTTTG+AGG | - | chr7_3:79247540-79247559 | None:intergenic | 40.0% |
| ACCAATTCCATCATTCGACA+AGG | + | chr7_3:79247543-79247562 | Msa1127630:CDS | 40.0% | |
| CTCCTTATATACCTCTCTGT+CGG | + | chr7_3:79247576-79247595 | Msa1127630:CDS | 40.0% | |
| ATATTATGACACCGACAGAG+AGG | - | chr7_3:79247590-79247609 | None:intergenic | 40.0% | |
| !! | GATTTTAACCGGGCTTCAAA+TGG | + | chr7_3:79247833-79247852 | Msa1127630:CDS | 40.0% |
| ATGTTGCAAAAGGTAGGATG+AGG | + | chr7_3:79247895-79247914 | Msa1127630:CDS | 40.0% | |
| CAAAAGGTAGGATGAGGATT+AGG | + | chr7_3:79247901-79247920 | Msa1127630:CDS | 40.0% | |
| !! | TAGGATGAGGATTAGGTTGA+AGG | + | chr7_3:79247908-79247927 | Msa1127630:CDS | 40.0% |
| !! | ATGAGGATTAGGTTGAAGGT+TGG | + | chr7_3:79247912-79247931 | Msa1127630:CDS | 40.0% |
| !! | TTGAAGGTTGGTTTAGCACT+TGG | + | chr7_3:79247924-79247943 | Msa1127630:CDS | 40.0% |
| !!! | GTGGTTTTGTGTATTGGTGT+TGG | + | chr7_3:79247951-79247970 | Msa1127630:CDS | 40.0% |
| !! | GTTTTGTTGAGGGTTTAGAC+TGG | + | chr7_3:79247988-79248007 | Msa1127630:CDS | 40.0% |
| GGCTGTTATGTCTGTTACAA+CGG | + | chr7_3:79248028-79248047 | Msa1127630:CDS | 40.0% | |
| GTTATGTCTGTTACAACGGT+TGG | + | chr7_3:79248032-79248051 | Msa1127630:CDS | 40.0% | |
| ! | TCTGTTACAACGGTTGGTTA+TGG | + | chr7_3:79248038-79248057 | Msa1127630:CDS | 40.0% |
| !!! | AGAGCTTTTAAGACTCTTCC+GGG | + | chr7_3:79248065-79248084 | Msa1127630:CDS | 40.0% |
| !! | GGCTTTTCTTTATTTGGCTG+AGG | + | chr7_3:79248139-79248158 | Msa1127630:CDS | 40.0% |
| ! | ACATAGGAGATTGGCTAAGA+AGG | + | chr7_3:79248178-79248197 | Msa1127630:CDS | 40.0% |
| GCTGCTGATATCAACAATAC+TGG | + | chr7_3:79248236-79248255 | Msa1127630:CDS | 40.0% | |
| CATTGCAATCCCTGCTATTA+TGG | + | chr7_3:79248565-79248584 | Msa1127630:intron | 40.0% | |
| CCGCAATGTAACCATAATTG+TGG | - | chr7_3:79248620-79248639 | None:intergenic | 40.0% | |
| ! | TCTGGTAAAGTGCTAATTGG+GGG | + | chr7_3:79248781-79248800 | Msa1127630:intron | 40.0% |
| TGACGACCAAAATTGCTATC+AGG | - | chr7_3:79248807-79248826 | None:intergenic | 40.0% | |
| ! | TGATTGGTAAGGTCACTTTC+TGG | + | chr7_3:79249098-79249117 | Msa1127630:intron | 40.0% |
| ! | GATTGGTAAGGTCACTTTCT+GGG | + | chr7_3:79249099-79249118 | Msa1127630:intron | 40.0% |
| GCATCATAGTACACAAGTAG+GGG | + | chr7_3:79249138-79249157 | Msa1127630:intron | 40.0% | |
| GTTATCTTCCCACAGTTAGA+GGG | - | chr7_3:79249393-79249412 | None:intergenic | 40.0% | |
| TGTTATCTTCCCACAGTTAG+AGG | - | chr7_3:79249394-79249413 | None:intergenic | 40.0% | |
| AACATTACCTCATCTCTTGG+AGG | + | chr7_3:79249410-79249429 | Msa1127630:CDS | 40.0% | |
| ACATTACCTCATCTCTTGGA+GGG | + | chr7_3:79249411-79249430 | Msa1127630:CDS | 40.0% | |
| GGACCTATCATGAATATACC+AGG | + | chr7_3:79249609-79249628 | Msa1127630:three_prime_UTR | 40.0% | |
| GAAGGATTTGGAAGAAGGGA+AGG | - | chr7_3:79247310-79247329 | None:intergenic | 45.0% | |
| GGCTATGTCGTTGAAGGATT+TGG | - | chr7_3:79247322-79247341 | None:intergenic | 45.0% | |
| !! | TGGTGGTGGTTGTTGTTGTA+GGG | - | chr7_3:79247346-79247365 | None:intergenic | 45.0% |
| ATCTCAGATGATTGTGGTGG+TGG | - | chr7_3:79247366-79247385 | None:intergenic | 45.0% | |
| !! | TGTTGTTGGTGGTGTTGTTG+TGG | - | chr7_3:79247408-79247427 | None:intergenic | 45.0% |
| AAGGTGTGGGAGAATGAACA+TGG | - | chr7_3:79247484-79247503 | None:intergenic | 45.0% | |
| ! | GTTTGAGGTTTGGGAAGTTG+AGG | - | chr7_3:79247525-79247544 | None:intergenic | 45.0% |
| ! | GCCTTGTCGAATGATGGAAT+TGG | - | chr7_3:79247547-79247566 | None:intergenic | 45.0% |
| CCAAATGCCTTGTCGAATGA+TGG | - | chr7_3:79247553-79247572 | None:intergenic | 45.0% | |
| ! | CCATCATTCGACAAGGCATT+TGG | + | chr7_3:79247550-79247569 | Msa1127630:CDS | 45.0% |
| ! | CACCGACAGAGAGGTATATA+AGG | - | chr7_3:79247581-79247600 | None:intergenic | 45.0% |
| TTCAAATGGGTGCTAGGGAA+GGG | + | chr7_3:79247847-79247866 | Msa1127630:CDS | 45.0% | |
| ! | TAGGGAAGGGTTTTCTGCTA+GGG | + | chr7_3:79247860-79247879 | Msa1127630:CDS | 45.0% |
| !!! | GGTGTGGTGGTTTTGTGTAT+TGG | + | chr7_3:79247945-79247964 | Msa1127630:CDS | 45.0% |
| !! | GTGTATTGGTGTTGGGAGTT+TGG | + | chr7_3:79247959-79247978 | Msa1127630:CDS | 45.0% |
| GACGATTGTTTGCCGCAATT+TGG | + | chr7_3:79248087-79248106 | Msa1127630:CDS | 45.0% | |
| TGGTTTATAATTGTGGCGCG+CGG | + | chr7_3:79248529-79248548 | Msa1127630:intron | 45.0% | |
| AGCTGATGCGACCACAATTA+TGG | + | chr7_3:79248606-79248625 | Msa1127630:intron | 45.0% | |
| AAGCTTGATCCCTCTAACTG+TGG | + | chr7_3:79249381-79249400 | Msa1127630:CDS | 45.0% | |
| AGCTTGATCCCTCTAACTGT+GGG | + | chr7_3:79249382-79249401 | Msa1127630:CDS | 45.0% | |
| TAGGGTGGCTATGTCGTTGA+AGG | - | chr7_3:79247328-79247347 | None:intergenic | 50.0% | |
| ! | TGGTGGTTGTTGTTGTAGGG+TGG | - | chr7_3:79247343-79247362 | None:intergenic | 50.0% |
| !! | GTGGTGGTGGTTGTTGTTGT+AGG | - | chr7_3:79247347-79247366 | None:intergenic | 50.0% |
| !! | TCAGATGATTGTGGTGGTGG+TGG | - | chr7_3:79247363-79247382 | None:intergenic | 50.0% |
| TGTGGGAGAATGAACATGGC+TGG | - | chr7_3:79247480-79247499 | None:intergenic | 50.0% | |
| GAGGTTTGGGAAGTTGAGGT+TGG | - | chr7_3:79247521-79247540 | None:intergenic | 50.0% | |
| CTTCAAATGGGTGCTAGGGA+AGG | + | chr7_3:79247846-79247865 | Msa1127630:CDS | 50.0% | |
| ! | CTAGGGAAGGGTTTTCTGCT+AGG | + | chr7_3:79247859-79247878 | Msa1127630:CDS | 50.0% |
| !! | GGTTGGTTTAGCACTTGGTG+TGG | + | chr7_3:79247929-79247948 | Msa1127630:CDS | 50.0% |
| !! | TGGTTTAGCACTTGGTGTGG+TGG | + | chr7_3:79247932-79247951 | Msa1127630:CDS | 50.0% |
| ATTGCGGCAAACAATCGTCC+CGG | - | chr7_3:79248086-79248105 | None:intergenic | 50.0% | |
| ! | TGGGGGCCTGATAGCAATTT+TGG | + | chr7_3:79248798-79248817 | Msa1127630:intron | 50.0% |
| TACCTCATCTCTTGGAGGGT+AGG | + | chr7_3:79249415-79249434 | Msa1127630:CDS | 50.0% | |
| !! | GATGATTGTGGTGGTGGTGG+TGG | - | chr7_3:79247360-79247379 | None:intergenic | 55.0% |
| !!! | TGGCTGGTGCTGTTTTGCAG+CGG | - | chr7_3:79247464-79247483 | None:intergenic | 55.0% |
| ! | CCTAGCACCCATTTGAAGCC+CGG | - | chr7_3:79247844-79247863 | None:intergenic | 55.0% |
| CGGGCTTCAAATGGGTGCTA+GGG | + | chr7_3:79247842-79247861 | Msa1127630:CDS | 55.0% | |
| TTGCAATTGCGGCCGCATCA+AGG | - | chr7_3:79248663-79248682 | None:intergenic | 55.0% | |
| TGCGGCCGCAATTGCAATTG+TGG | + | chr7_3:79248666-79248685 | Msa1127630:intron | 55.0% | |
| GACCTACCCTCCAAGAGATG+AGG | - | chr7_3:79249420-79249439 | None:intergenic | 55.0% | |
| CCGGGCTTCAAATGGGTGCT+AGG | + | chr7_3:79247841-79247860 | Msa1127630:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 79247173 | 79249678 | 79247173 | ID=Msa1127630;Name=Msa1127630 |
| chr7_3 | mRNA | 79247173 | 79249678 | 79247173 | ID=Msa1127630-mRNA-1;Parent=Msa1127630;Name=Msa1127630-mRNA-1;_AED=0.00;_eAED=0.00;_QI=85|1|1|1|1|1|2|235|385 |
| chr7_3 | exon | 79247173 | 79248267 | 79247173 | ID=Msa1127630-mRNA-1:exon:22360;Parent=Msa1127630-mRNA-1 |
| chr7_3 | exon | 79249296 | 79249678 | 79249296 | ID=Msa1127630-mRNA-1:exon:22361;Parent=Msa1127630-mRNA-1 |
| chr7_3 | five_prime_UTR | 79247173 | 79247257 | 79247173 | ID=Msa1127630-mRNA-1:five_prime_utr;Parent=Msa1127630-mRNA-1 |
| chr7_3 | CDS | 79247258 | 79248267 | 79247258 | ID=Msa1127630-mRNA-1:cds;Parent=Msa1127630-mRNA-1 |
| chr7_3 | CDS | 79249296 | 79249443 | 79249296 | ID=Msa1127630-mRNA-1:cds;Parent=Msa1127630-mRNA-1 |
| chr7_3 | three_prime_UTR | 79249444 | 79249678 | 79249444 | ID=Msa1127630-mRNA-1:three_prime_utr;Parent=Msa1127630-mRNA-1 |
| Gene Sequence |
| Protein sequence |
