Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1127580 | RHN49092.1 | 97.150 | 386 | 6 | 2 | 1 | 385 | 51 | 432 | 0.0 | 760 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1127580 | sp|Q9S6Z8|KCO5_ARATH | 68.000 | 325 | 98 | 1 | 63 | 381 | 80 | 404 | 2.21e-153 | 441 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1127580 | A0A396H780 | 97.150 | 386 | 6 | 2 | 1 | 385 | 51 | 432 | 0.0 | 760 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0017510 | Msa1127580 | 0.807261 | 5.511615e-50 | -8.615850e-47 |
| Msa0610430 | Msa1127580 | 0.801300 | 9.610224e-49 | -8.615850e-47 |
| Msa0638280 | Msa1127580 | 0.813424 | 2.577545e-51 | -8.615850e-47 |
| Msa0673460 | Msa1127580 | 0.804948 | 1.690508e-49 | -8.615850e-47 |
| Msa0157290 | Msa1127580 | 0.807118 | 5.909238e-50 | -8.615850e-47 |
| Msa0215320 | Msa1127580 | -0.808730 | 2.682779e-50 | -8.615850e-47 |
| Msa0223410 | Msa1127580 | -0.806143 | 9.489718e-50 | -8.615850e-47 |
| Msa0226890 | Msa1127580 | 0.808709 | 2.711199e-50 | -8.615850e-47 |
| Msa0378080 | Msa1127580 | 0.804810 | 1.806554e-49 | -8.615850e-47 |
| Msa0442850 | Msa1127580 | 0.816604 | 5.075259e-52 | -8.615850e-47 |
| Msa0466390 | Msa1127580 | 0.818055 | 2.392990e-52 | -8.615850e-47 |
| Msa0467960 | Msa1127580 | -0.800645 | 1.307733e-48 | -8.615850e-47 |
| Msa0475580 | Msa1127580 | 0.801015 | 1.099101e-48 | -8.615850e-47 |
| Msa0990960 | Msa1127580 | 0.812367 | 4.393422e-51 | -8.615850e-47 |
| Msa1014540 | Msa1127580 | 0.819841 | 9.396740e-53 | -8.615850e-47 |
| Msa1046300 | Msa1127580 | 0.808810 | 2.578878e-50 | -8.615850e-47 |
| Msa1082910 | Msa1127580 | 0.845049 | 5.174277e-59 | -8.615850e-47 |
| Msa0241640 | Msa1127580 | 0.811805 | 5.826739e-51 | -8.615850e-47 |
| Msa0279700 | Msa1127580 | 0.836623 | 8.394564e-57 | -8.615850e-47 |
| Msa0312690 | Msa1127580 | -0.801383 | 9.242389e-49 | -8.615850e-47 |
| Msa0323080 | Msa1127580 | 0.814654 | 1.379729e-51 | -8.615850e-47 |
| Msa0344830 | Msa1127580 | 0.834157 | 3.525008e-56 | -8.615850e-47 |
| Msa0350990 | Msa1127580 | 0.801866 | 7.356790e-49 | -8.615850e-47 |
| Msa0358170 | Msa1127580 | 0.819286 | 1.257953e-52 | -8.615850e-47 |
| Msa1127580 | Msa1127630 | 0.990648 | 1.215186e-183 | -8.615850e-47 |
| Msa1127580 | Msa1186950 | -0.812920 | 3.326113e-51 | -8.615850e-47 |
| Msa1127580 | Msa1351620 | 0.805215 | 1.486473e-49 | -8.615850e-47 |
| Msa1127580 | Msa1362880 | 0.811713 | 6.102027e-51 | -8.615850e-47 |
| Msa1127580 | Msa1369530 | 0.830446 | 2.923187e-55 | -8.615850e-47 |
| Msa0518040 | Msa1127580 | 0.805718 | 1.166192e-49 | -8.615850e-47 |
| Msa0562440 | Msa1127580 | 0.800034 | 1.741761e-48 | -8.615850e-47 |
| Msa0579290 | Msa1127580 | 0.808923 | 2.439732e-50 | -8.615850e-47 |
| Msa0579390 | Msa1127580 | 0.818093 | 2.346464e-52 | -8.615850e-47 |
| Msa0850960 | Msa1127580 | 0.807283 | 5.451712e-50 | -8.615850e-47 |
| Msa0880140 | Msa1127580 | 0.805503 | 1.293382e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1127580 | MtrunA17_Chr7g0270761 | 97.150 | 386 | 6 | 2 | 1 | 385 | 51 | 432 | 0.0 | 760 |
| Msa1127580 | MtrunA17_Chr4g0051871 | 62.654 | 324 | 116 | 3 | 63 | 385 | 99 | 418 | 2.44e-145 | 418 |
| Msa1127580 | MtrunA17_Chr5g0443241 | 41.108 | 343 | 195 | 6 | 5 | 343 | 3 | 342 | 4.24e-71 | 227 |
| Msa1127580 | MtrunA17_Chr4g0076241 | 37.288 | 295 | 177 | 3 | 84 | 376 | 55 | 343 | 2.22e-65 | 211 |
| Msa1127580 | MtrunA17_Chr5g0446411 | 32.551 | 341 | 219 | 3 | 50 | 385 | 14 | 348 | 3.08e-59 | 196 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1127580 | AT4G01840.1 | 68.000 | 325 | 98 | 1 | 63 | 381 | 80 | 404 | 2.25e-154 | 441 |
| Msa1127580 | AT4G18160.1 | 60.725 | 331 | 128 | 2 | 55 | 385 | 106 | 434 | 5.95e-133 | 388 |
| Msa1127580 | AT5G46370.1 | 57.764 | 322 | 129 | 2 | 69 | 385 | 115 | 434 | 6.61e-125 | 367 |
| Msa1127580 | AT1G02510.1 | 43.151 | 292 | 133 | 5 | 84 | 369 | 14 | 278 | 4.86e-68 | 216 |
| Msa1127580 | AT5G55630.2 | 37.024 | 289 | 178 | 3 | 97 | 385 | 73 | 357 | 1.04e-61 | 202 |
| Msa1127580 | AT5G55630.1 | 37.024 | 289 | 178 | 3 | 97 | 385 | 73 | 357 | 1.04e-61 | 202 |
| Msa1127580 | AT5G46360.1 | 51.534 | 163 | 76 | 1 | 223 | 385 | 100 | 259 | 1.73e-47 | 162 |
| Msa1127580 | AT5G46360.2 | 51.773 | 141 | 65 | 1 | 223 | 363 | 100 | 237 | 4.07e-40 | 143 |
Find 98 sgRNAs with CRISPR-Local
Find 186 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGGGTTGATTCTATTTATT+TGG | 0.161088 | 7_3:+79207489 | Msa1127580:CDS |
| GTTGGTCATTGTTGGGTTTA+AGG | 0.175814 | 7_3:-79206982 | None:intergenic |
| GTGGTGGTGGTTGTTGTTGT+AGG | 0.206072 | 7_3:-79206826 | None:intergenic |
| AGTTTAGTCATTGGTGTTAA+AGG | 0.245811 | 7_3:-79207199 | None:intergenic |
| GACGATTGTTTGCCGCAATT+TGG | 0.274052 | 7_3:+79207569 | Msa1127580:CDS |
| GGCTATGTCGTTGAAGGATT+TGG | 0.277283 | 7_3:-79206801 | None:intergenic |
| CCATTGACGAAAAGAAAATT+AGG | 0.287019 | 7_3:-79206721 | None:intergenic |
| ATGGAATTGGTTTGAGGTTT+GGG | 0.300185 | 7_3:-79207013 | None:intergenic |
| TGCAAATTTGTGATCAGTTC+AGG | 0.304949 | 7_3:+79208840 | Msa1127580:CDS |
| TGTACAGAAATTAGAATTGT+TGG | 0.316179 | 7_3:+79209033 | Msa1127580:three_prime_UTR |
| CCATCATTCGACAAGGCATT+TGG | 0.327849 | 7_3:+79207032 | Msa1127580:CDS |
| CAAAAGGTAGGATGAGGATT+AGG | 0.342640 | 7_3:+79207383 | Msa1127580:CDS |
| GTGTATTGGTGTTGGGAGTT+TGG | 0.345263 | 7_3:+79207441 | Msa1127580:CDS |
| TAGGATGAGGATTAGGTTGA+AGG | 0.364579 | 7_3:+79207390 | Msa1127580:CDS |
| AAAAGATAAATGATGAGATT+TGG | 0.371428 | 7_3:-79206676 | None:intergenic |
| AGTTGAGGTTGGTCATTGTT+GGG | 0.371622 | 7_3:-79206989 | None:intergenic |
| CACCGACAGAGAGGTATATA+AGG | 0.374305 | 7_3:-79207060 | None:intergenic |
| GATGGAATTGGTTTGAGGTT+TGG | 0.376622 | 7_3:-79207014 | None:intergenic |
| GAAAGATGAAATAATGTTCC+TGG | 0.384243 | 7_3:-79209109 | None:intergenic |
| TTTCTACTTTGATGGTTGCT+AGG | 0.386044 | 7_3:+79207599 | Msa1127580:CDS |
| AAGTTGAGGTTGGTCATTGT+TGG | 0.391303 | 7_3:-79206990 | None:intergenic |
| GCTGCTGATATCAACAATAC+TGG | 0.402274 | 7_3:+79207718 | Msa1127580:CDS |
| TTGACGGTTGATTAGAAGAA+AGG | 0.404260 | 7_3:-79206756 | None:intergenic |
| TGTTATCTTCCCACAGTTAG+AGG | 0.407237 | 7_3:-79208873 | None:intergenic |
| AAATAAAGAGCATCAACAAC+AGG | 0.414802 | 7_3:-79207133 | None:intergenic |
| TTCTACTTTGATGGTTGCTA+GGG | 0.415421 | 7_3:+79207600 | Msa1127580:CDS |
| CATTGTTGGGTTTAAGGTGT+GGG | 0.422331 | 7_3:-79206976 | None:intergenic |
| GCAAAATGTACATGTATTGT+TGG | 0.430655 | 7_3:+79208999 | Msa1127580:three_prime_UTR |
| GAGGTTTGGGAAGTTGAGGT+TGG | 0.431644 | 7_3:-79207000 | None:intergenic |
| ACCATGTGTACAATTGGTTA+TGG | 0.433224 | 7_3:+79207166 | Msa1127580:CDS |
| TGGTGGTGGTTGTTGTTGTA+GGG | 0.435035 | 7_3:-79206825 | None:intergenic |
| TTGAAGGTTGGTTTAGCACT+TGG | 0.451400 | 7_3:+79207406 | Msa1127580:CDS |
| CCAAATGCCTTGTCGAATGA+TGG | 0.453277 | 7_3:-79207032 | None:intergenic |
| ATAGTCACCATGTGTACAAT+TGG | 0.454431 | 7_3:+79207160 | Msa1127580:CDS |
| TATATAGTTGATGTTGCAAA+AGG | 0.455329 | 7_3:+79207367 | Msa1127580:CDS |
| TTGTTGTGGAGTGAAGTTGA+TGG | 0.456292 | 7_3:-79206873 | None:intergenic |
| CCGGGCTTCAAATGGGTGCT+AGG | 0.460277 | 7_3:+79207323 | Msa1127580:CDS |
| GATGAGAAAATGGTTGTTGT+TGG | 0.463757 | 7_3:-79206901 | None:intergenic |
| TCGTTGAAGGATTTGGAAGA+AGG | 0.465006 | 7_3:-79206794 | None:intergenic |
| TCACTAGAAGATGGATAGAA+AGG | 0.465834 | 7_3:+79209069 | Msa1127580:three_prime_UTR |
| CGAATGATGGAATTGGTTTG+AGG | 0.466080 | 7_3:-79207019 | None:intergenic |
| TGTTGTTGGTGGTGTTGTTG+TGG | 0.469045 | 7_3:-79206887 | None:intergenic |
| ATGAGGATTAGGTTGAAGGT+TGG | 0.469655 | 7_3:+79207394 | Msa1127580:CDS |
| ACATAGGAGATTGGCTAAGA+AGG | 0.469957 | 7_3:+79207660 | Msa1127580:CDS |
| TAGGGTGGCTATGTCGTTGA+AGG | 0.470550 | 7_3:-79206807 | None:intergenic |
| GTTCCTGGTATATTCATGAT+AGG | 0.470657 | 7_3:-79209094 | None:intergenic |
| GATAACATTACCTCATCTCT+TGG | 0.475408 | 7_3:+79208889 | Msa1127580:CDS |
| CAAAATGTACATGTATTGTT+GGG | 0.483368 | 7_3:+79209000 | Msa1127580:three_prime_UTR |
| TCTGTTACAACGGTTGGTTA+TGG | 0.489001 | 7_3:+79207520 | Msa1127580:CDS |
| CAAGCAAAGAGTTTAGTCAT+TGG | 0.489008 | 7_3:-79207208 | None:intergenic |
| CTTCAAATGGGTGCTAGGGA+AGG | 0.490825 | 7_3:+79207328 | Msa1127580:CDS |
| GATGATTGTGGTGGTGGTGG+TGG | 0.499175 | 7_3:-79206839 | None:intergenic |
| TGGTGGTTGTTGTTGTAGGG+TGG | 0.501302 | 7_3:-79206822 | None:intergenic |
| AAGCTTGATCCCTCTAACTG+TGG | 0.503033 | 7_3:+79208863 | Msa1127580:CDS |
| GTTATGTCTGTTACAACGGT+TGG | 0.504121 | 7_3:+79207514 | Msa1127580:CDS |
| CCTAGCACCCATTTGAAGCC+CGG | 0.504757 | 7_3:-79207323 | None:intergenic |
| ATCTCAGATGATTGTGGTGG+TGG | 0.509487 | 7_3:-79206845 | None:intergenic |
| GGCTGTTATGTCTGTTACAA+CGG | 0.510559 | 7_3:+79207510 | Msa1127580:CDS |
| TTCAAATGGGTGCTAGGGAA+GGG | 0.511419 | 7_3:+79207329 | Msa1127580:CDS |
| TGATAGAAGACATAGGAGAT+TGG | 0.511668 | 7_3:+79207651 | Msa1127580:CDS |
| GAGAAATTACTATTGAAGAC+TGG | 0.520740 | 7_3:+79207692 | Msa1127580:CDS |
| AACATTACCTCATCTCTTGG+AGG | 0.522630 | 7_3:+79208892 | Msa1127580:CDS |
| TGACGGTTGATTAGAAGAAA+GGG | 0.523925 | 7_3:-79206755 | None:intergenic |
| TCATTGTTGGGTTTAAGGTG+TGG | 0.524950 | 7_3:-79206977 | None:intergenic |
| GAAGGATTTGGAAGAAGGGA+AGG | 0.526559 | 7_3:-79206789 | None:intergenic |
| CGTTGAAGGATTTGGAAGAA+GGG | 0.527448 | 7_3:-79206793 | None:intergenic |
| GAGAAAATGGTTGTTGTTGG+TGG | 0.528520 | 7_3:-79206898 | None:intergenic |
| TCAGATGATTGTGGTGGTGG+TGG | 0.528689 | 7_3:-79206842 | None:intergenic |
| GCCTTGTCGAATGATGGAAT+TGG | 0.531639 | 7_3:-79207026 | None:intergenic |
| GTTTGAGGTTTGGGAAGTTG+AGG | 0.533112 | 7_3:-79207004 | None:intergenic |
| CACTAGAAGATGGATAGAAA+GGG | 0.535885 | 7_3:+79209070 | Msa1127580:three_prime_UTR |
| CGGGCTTCAAATGGGTGCTA+GGG | 0.542060 | 7_3:+79207324 | Msa1127580:CDS |
| ATGTTGCAAAAGGTAGGATG+AGG | 0.545166 | 7_3:+79207377 | Msa1127580:CDS |
| TGGTTTAGCACTTGGTGTGG+TGG | 0.548065 | 7_3:+79207414 | Msa1127580:CDS |
| AGAATGAAGTCACTAGAAGA+TGG | 0.548520 | 7_3:+79209060 | Msa1127580:three_prime_UTR |
| GTTATCTTCCCACAGTTAGA+GGG | 0.552658 | 7_3:-79208872 | None:intergenic |
| CTCCTTATATACCTCTCTGT+CGG | 0.565796 | 7_3:+79207058 | Msa1127580:CDS |
| AAGGATTTGGAAGAAGGGAA+GGG | 0.571773 | 7_3:-79206788 | None:intergenic |
| TTCATAGATATACTTCTAAG+TGG | 0.573910 | 7_3:+79207256 | Msa1127580:CDS |
| AGCTTGATCCCTCTAACTGT+GGG | 0.580855 | 7_3:+79208864 | Msa1127580:CDS |
| TACCTCATCTCTTGGAGGGT+AGG | 0.595849 | 7_3:+79208897 | Msa1127580:CDS |
| TCCATAACCAATTGTACACA+TGG | 0.601726 | 7_3:-79207167 | None:intergenic |
| CTAGAATTGATAGAAGACAT+AGG | 0.603969 | 7_3:+79207644 | Msa1127580:CDS |
| TAGTTGATGTTGCAAAAGGT+AGG | 0.608491 | 7_3:+79207371 | Msa1127580:CDS |
| TGTGGGAGAATGAACATGGC+TGG | 0.615636 | 7_3:-79206959 | None:intergenic |
| ATTGCGGCAAACAATCGTCC+CGG | 0.616820 | 7_3:-79207565 | None:intergenic |
| GATTGTATCTCAGATGATTG+TGG | 0.626746 | 7_3:-79206851 | None:intergenic |
| GGACCTATCATGAATATACC+AGG | 0.628206 | 7_3:+79209091 | Msa1127580:three_prime_UTR |
| GGTTGGTTTAGCACTTGGTG+TGG | 0.630070 | 7_3:+79207411 | Msa1127580:CDS |
| ACATTACCTCATCTCTTGGA+GGG | 0.633541 | 7_3:+79208893 | Msa1127580:CDS |
| GACCTACCCTCCAAGAGATG+AGG | 0.650185 | 7_3:-79208899 | None:intergenic |
| AATAAAGAGCATCAACAACA+GGG | 0.664300 | 7_3:-79207132 | None:intergenic |
| ACCAATTCCATCATTCGACA+AGG | 0.666542 | 7_3:+79207025 | Msa1127580:CDS |
| AGAAAACAACAACCAAATTG+CGG | 0.666954 | 7_3:-79207581 | None:intergenic |
| ACGAAAAGAAAATTAGGACA+TGG | 0.675064 | 7_3:-79206715 | None:intergenic |
| TGTATCTCAGATGATTGTGG+TGG | 0.681331 | 7_3:-79206848 | None:intergenic |
| AAGGTGTGGGAGAATGAACA+TGG | 0.713654 | 7_3:-79206963 | None:intergenic |
| ATATTATGACACCGACAGAG+AGG | 0.738363 | 7_3:-79207069 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATTAGAATATCATATTTA+TGG | - | chr7_3:79208339-79208358 | None:intergenic | 10.0% |
| !!! | TATTCAATTATTTTATCATA+TGG | + | chr7_3:79208678-79208697 | Msa1127580:intron | 10.0% |
| !! | TAATTAACTAATGATCTTAA+GGG | - | chr7_3:79208372-79208391 | None:intergenic | 15.0% |
| !! | AAAAGATAAATGATGAGATT+TGG | - | chr7_3:79206679-79206698 | None:intergenic | 20.0% |
| !!! | TTTACCCTCTTTTTAATTTT+AGG | + | chr7_3:79207765-79207784 | Msa1127580:intron | 20.0% |
| !! | TTGACCTAAAATTAAAAAGA+GGG | - | chr7_3:79207772-79207791 | None:intergenic | 20.0% |
| !! | TTTGACCTAAAATTAAAAAG+AGG | - | chr7_3:79207773-79207792 | None:intergenic | 20.0% |
| !! | AATTAACTAATGATCTTAAG+GGG | - | chr7_3:79208371-79208390 | None:intergenic | 20.0% |
| !! | GTAATTAACTAATGATCTTA+AGG | - | chr7_3:79208373-79208392 | None:intergenic | 20.0% |
| !! | CTTATTATTAAACTTGTGAT+TGG | + | chr7_3:79208564-79208583 | Msa1127580:intron | 20.0% |
| !!! | ATATGGTGTAGTTATTTTAA+AGG | + | chr7_3:79208695-79208714 | Msa1127580:intron | 20.0% |
| !!! | TTTTGTTTGTGATGAGAAAA+TGG | - | chr7_3:79206914-79206933 | None:intergenic | 25.0% |
| ! | TTCAACACAAAAAATTTCTC+TGG | + | chr7_3:79207097-79207116 | Msa1127580:CDS | 25.0% |
| ! | TTCATAGATATACTTCTAAG+TGG | + | chr7_3:79207256-79207275 | Msa1127580:CDS | 25.0% |
| !!! | TGGACTTGTTAATTTTGTTT+TGG | + | chr7_3:79207276-79207295 | Msa1127580:CDS | 25.0% |
| !! | TATATAGTTGATGTTGCAAA+AGG | + | chr7_3:79207367-79207386 | Msa1127580:CDS | 25.0% |
| !!! | TCAACAATACTGGTTTTATT+AGG | + | chr7_3:79207728-79207747 | Msa1127580:CDS | 25.0% |
| !! | AACATTTTGTTGCAATATCA+AGG | + | chr7_3:79207892-79207911 | Msa1127580:intron | 25.0% |
| !! | CATAATTTTCCATAATAGCA+GGG | - | chr7_3:79208059-79208078 | None:intergenic | 25.0% |
| ! | ACATAAAAAAAACCTTGATG+CGG | + | chr7_3:79208130-79208149 | Msa1127580:intron | 25.0% |
| ! | GCTTATGACTAAGAATATAT+TGG | - | chr7_3:79208462-79208481 | None:intergenic | 25.0% |
| !! | TTAATTCACATTAGCTTAGA+TGG | + | chr7_3:79208501-79208520 | Msa1127580:intron | 25.0% |
| !! | TAATTCACATTAGCTTAGAT+GGG | + | chr7_3:79208502-79208521 | Msa1127580:intron | 25.0% |
| ! | CAAAATGTACATGTATTGTT+GGG | + | chr7_3:79209000-79209019 | Msa1127580:three_prime_UTR | 25.0% |
| ! | TGTACAGAAATTAGAATTGT+TGG | + | chr7_3:79209033-79209052 | Msa1127580:three_prime_UTR | 25.0% |
| ACGAAAAGAAAATTAGGACA+TGG | - | chr7_3:79206718-79206737 | None:intergenic | 30.0% | |
| CCATTGACGAAAAGAAAATT+AGG | - | chr7_3:79206724-79206743 | None:intergenic | 30.0% | |
| ! | CCTAATTTTCTTTTCGTCAA+TGG | + | chr7_3:79206721-79206740 | Msa1127580:exon | 30.0% |
| !! | AATAAAGAGCATCAACAACA+GGG | - | chr7_3:79207135-79207154 | None:intergenic | 30.0% |
| !! | AAATAAAGAGCATCAACAAC+AGG | - | chr7_3:79207136-79207155 | None:intergenic | 30.0% |
| !! | AGTTTAGTCATTGGTGTTAA+AGG | - | chr7_3:79207202-79207221 | None:intergenic | 30.0% |
| !!! | TGCTTGTGTTTTTGTTTTAG+TGG | + | chr7_3:79207225-79207244 | Msa1127580:CDS | 30.0% |
| !!! | GCTTGTGTTTTTGTTTTAGT+GGG | + | chr7_3:79207226-79207245 | Msa1127580:CDS | 30.0% |
| !!! | GTTTTTGTTTTAGTGGGTTT+TGG | + | chr7_3:79207232-79207251 | Msa1127580:CDS | 30.0% |
| !! | CAAGAGAATACGATTTTAAC+CGG | + | chr7_3:79207304-79207323 | Msa1127580:CDS | 30.0% |
| !! | AAGAGAATACGATTTTAACC+GGG | + | chr7_3:79207305-79207324 | Msa1127580:CDS | 30.0% |
| !!! | TTTGGTTTTGTGTTTTGTTG+AGG | + | chr7_3:79207459-79207478 | Msa1127580:CDS | 30.0% |
| !!! | TTGGTTTTGTGTTTTGTTGA+GGG | + | chr7_3:79207460-79207479 | Msa1127580:CDS | 30.0% |
| !! | CTGGGTTGATTCTATTTATT+TGG | + | chr7_3:79207489-79207508 | Msa1127580:CDS | 30.0% |
| AGAAAACAACAACCAAATTG+CGG | - | chr7_3:79207584-79207603 | None:intergenic | 30.0% | |
| !!! | GTTGTTGTTTTCTACTTTGA+TGG | + | chr7_3:79207591-79207610 | Msa1127580:CDS | 30.0% |
| CTAGAATTGATAGAAGACAT+AGG | + | chr7_3:79207644-79207663 | Msa1127580:CDS | 30.0% | |
| GAGAAATTACTATTGAAGAC+TGG | + | chr7_3:79207692-79207711 | Msa1127580:CDS | 30.0% | |
| !! | AAATCCGTAGTTCTAAATTG+CGG | + | chr7_3:79207790-79207809 | Msa1127580:intron | 30.0% |
| ! | TATACCGCAATTTAGAACTA+CGG | - | chr7_3:79207797-79207816 | None:intergenic | 30.0% |
| GCGGTATATAATTGTAATTG+TGG | + | chr7_3:79207809-79207828 | Msa1127580:intron | 30.0% | |
| TAATTGTGGCTGTAATGTAA+AGG | + | chr7_3:79207823-79207842 | Msa1127580:intron | 30.0% | |
| AGCAATACACAAACAAAACA+TGG | + | chr7_3:79207973-79207992 | Msa1127580:intron | 30.0% | |
| ACATGAGTGGTTTATAATTG+TGG | + | chr7_3:79208004-79208023 | Msa1127580:intron | 30.0% | |
| ! | CCATAATTTTCCATAATAGC+AGG | - | chr7_3:79208060-79208079 | None:intergenic | 30.0% |
| CCTGCTATTATGGAAAATTA+TGG | + | chr7_3:79208057-79208076 | Msa1127580:intron | 30.0% | |
| GAATGTGAAATTACTACTTC+TGG | + | chr7_3:79208245-79208264 | Msa1127580:intron | 30.0% | |
| ACCAAACAAGAATACAACAT+TGG | + | chr7_3:79208310-79208329 | Msa1127580:intron | 30.0% | |
| TCCAATGTTGTATTCTTGTT+TGG | - | chr7_3:79208314-79208333 | None:intergenic | 30.0% | |
| !! | ATTTTCAAGCTGAAAGAGAT+GGG | + | chr7_3:79208794-79208813 | Msa1127580:CDS | 30.0% |
| GCAAAATGTACATGTATTGT+TGG | + | chr7_3:79208999-79209018 | Msa1127580:three_prime_UTR | 30.0% | |
| GAAAGATGAAATAATGTTCC+TGG | - | chr7_3:79209112-79209131 | None:intergenic | 30.0% | |
| TGACGGTTGATTAGAAGAAA+GGG | - | chr7_3:79206758-79206777 | None:intergenic | 35.0% | |
| TTGACGGTTGATTAGAAGAA+AGG | - | chr7_3:79206759-79206778 | None:intergenic | 35.0% | |
| ! | GGAAGGGTTGTAAATTTTGA+CGG | - | chr7_3:79206775-79206794 | None:intergenic | 35.0% |
| GATTGTATCTCAGATGATTG+TGG | - | chr7_3:79206854-79206873 | None:intergenic | 35.0% | |
| GATGAGAAAATGGTTGTTGT+TGG | - | chr7_3:79206904-79206923 | None:intergenic | 35.0% | |
| !! | ATGGAATTGGTTTGAGGTTT+GGG | - | chr7_3:79207016-79207035 | None:intergenic | 35.0% |
| ATAGTCACCATGTGTACAAT+TGG | + | chr7_3:79207160-79207179 | Msa1127580:CDS | 35.0% | |
| ACCATGTGTACAATTGGTTA+TGG | + | chr7_3:79207166-79207185 | Msa1127580:CDS | 35.0% | |
| TCCATAACCAATTGTACACA+TGG | - | chr7_3:79207170-79207189 | None:intergenic | 35.0% | |
| CAAGCAAAGAGTTTAGTCAT+TGG | - | chr7_3:79207211-79207230 | None:intergenic | 35.0% | |
| !! | ATTTTAACCGGGCTTCAAAT+GGG | + | chr7_3:79207316-79207335 | Msa1127580:CDS | 35.0% |
| ! | TAGTTGATGTTGCAAAAGGT+AGG | + | chr7_3:79207371-79207390 | Msa1127580:CDS | 35.0% |
| !!! | TGGTTTTGTGTATTGGTGTT+GGG | + | chr7_3:79207434-79207453 | Msa1127580:CDS | 35.0% |
| ! | TTTTGTTGAGGGTTTAGACT+GGG | + | chr7_3:79207471-79207490 | Msa1127580:CDS | 35.0% |
| !!! | TAGAGCTTTTAAGACTCTTC+CGG | + | chr7_3:79207546-79207565 | Msa1127580:CDS | 35.0% |
| ! | TTTCTACTTTGATGGTTGCT+AGG | + | chr7_3:79207599-79207618 | Msa1127580:CDS | 35.0% |
| ! | TTCTACTTTGATGGTTGCTA+GGG | + | chr7_3:79207600-79207619 | Msa1127580:CDS | 35.0% |
| ! | TGCTAGGGCTTTTCTTTATT+TGG | + | chr7_3:79207615-79207634 | Msa1127580:CDS | 35.0% |
| TGATAGAAGACATAGGAGAT+TGG | + | chr7_3:79207651-79207670 | Msa1127580:CDS | 35.0% | |
| AAAGAGGGTAAAGAACTGTT+GGG | - | chr7_3:79207757-79207776 | None:intergenic | 35.0% | |
| AAAAGAGGGTAAAGAACTGT+TGG | - | chr7_3:79207758-79207777 | None:intergenic | 35.0% | |
| TTGCAACAACATTGCAATTG+CGG | + | chr7_3:79207858-79207877 | Msa1127580:intron | 35.0% | |
| TATCAAGGTTTGCAGTGTAA+CGG | + | chr7_3:79207907-79207926 | Msa1127580:intron | 35.0% | |
| ! | GGCAACTTCAATTTAGAACA+TGG | + | chr7_3:79207928-79207947 | Msa1127580:intron | 35.0% |
| CATGGTAATTTACACATGAG+TGG | + | chr7_3:79207991-79208010 | Msa1127580:intron | 35.0% | |
| CCACAATTATGGTTACATTG+CGG | + | chr7_3:79208099-79208118 | Msa1127580:intron | 35.0% | |
| TCTATCCACAATTGCAATTG+CGG | - | chr7_3:79208156-79208175 | None:intergenic | 35.0% | |
| !! | AAGACTAGTCTTATTGGTTC+TGG | - | chr7_3:79208220-79208239 | None:intergenic | 35.0% |
| !! | CTCACAAAGACTAGTCTTAT+TGG | - | chr7_3:79208226-79208245 | None:intergenic | 35.0% |
| ! | ACTTCTGGTAAAGTGCTAAT+TGG | + | chr7_3:79208260-79208279 | Msa1127580:intron | 35.0% |
| ! | CTTCTGGTAAAGTGCTAATT+GGG | + | chr7_3:79208261-79208280 | Msa1127580:intron | 35.0% |
| ! | TTCTGGTAAAGTGCTAATTG+GGG | + | chr7_3:79208262-79208281 | Msa1127580:intron | 35.0% |
| CAAGTTGCTATAATCATCTG+TGG | + | chr7_3:79208392-79208411 | Msa1127580:intron | 35.0% | |
| !! | TGATTGGTAATGTCACTTTC+TGG | + | chr7_3:79208580-79208599 | Msa1127580:intron | 35.0% |
| !! | GATTGGTAATGTCACTTTCT+GGG | + | chr7_3:79208581-79208600 | Msa1127580:intron | 35.0% |
| ATGCATCATAGTACACAAGT+AGG | + | chr7_3:79208618-79208637 | Msa1127580:intron | 35.0% | |
| TGCATCATAGTACACAAGTA+GGG | + | chr7_3:79208619-79208638 | Msa1127580:intron | 35.0% | |
| GAAAACAAAGTGAAGAAGGA+TGG | - | chr7_3:79208756-79208775 | None:intergenic | 35.0% | |
| TGCTGAAAACAAAGTGAAGA+AGG | - | chr7_3:79208760-79208779 | None:intergenic | 35.0% | |
| !! | GATTTTCAAGCTGAAAGAGA+TGG | + | chr7_3:79208793-79208812 | Msa1127580:CDS | 35.0% |
| TGCAAATTTGTGATCAGTTC+AGG | + | chr7_3:79208840-79208859 | Msa1127580:CDS | 35.0% | |
| GATAACATTACCTCATCTCT+TGG | + | chr7_3:79208889-79208908 | Msa1127580:CDS | 35.0% | |
| !!! | TGTTTTAGTGCAAAAGCTAG+TGG | + | chr7_3:79208947-79208966 | Msa1127580:three_prime_UTR | 35.0% |
| AGAATGAAGTCACTAGAAGA+TGG | + | chr7_3:79209060-79209079 | Msa1127580:three_prime_UTR | 35.0% | |
| TCACTAGAAGATGGATAGAA+AGG | + | chr7_3:79209069-79209088 | Msa1127580:three_prime_UTR | 35.0% | |
| CACTAGAAGATGGATAGAAA+GGG | + | chr7_3:79209070-79209089 | Msa1127580:three_prime_UTR | 35.0% | |
| GTTCCTGGTATATTCATGAT+AGG | - | chr7_3:79209097-79209116 | None:intergenic | 35.0% | |
| AAGGATTTGGAAGAAGGGAA+GGG | - | chr7_3:79206791-79206810 | None:intergenic | 40.0% | |
| CGTTGAAGGATTTGGAAGAA+GGG | - | chr7_3:79206796-79206815 | None:intergenic | 40.0% | |
| TCGTTGAAGGATTTGGAAGA+AGG | - | chr7_3:79206797-79206816 | None:intergenic | 40.0% | |
| TGTATCTCAGATGATTGTGG+TGG | - | chr7_3:79206851-79206870 | None:intergenic | 40.0% | |
| TTGTTGTGGAGTGAAGTTGA+TGG | - | chr7_3:79206876-79206895 | None:intergenic | 40.0% | |
| ! | GAGAAAATGGTTGTTGTTGG+TGG | - | chr7_3:79206901-79206920 | None:intergenic | 40.0% |
| ! | CATTGTTGGGTTTAAGGTGT+GGG | - | chr7_3:79206979-79206998 | None:intergenic | 40.0% |
| ! | TCATTGTTGGGTTTAAGGTG+TGG | - | chr7_3:79206980-79206999 | None:intergenic | 40.0% |
| GTTGGTCATTGTTGGGTTTA+AGG | - | chr7_3:79206985-79207004 | None:intergenic | 40.0% | |
| ! | AGTTGAGGTTGGTCATTGTT+GGG | - | chr7_3:79206992-79207011 | None:intergenic | 40.0% |
| ! | AAGTTGAGGTTGGTCATTGT+TGG | - | chr7_3:79206993-79207012 | None:intergenic | 40.0% |
| !! | GATGGAATTGGTTTGAGGTT+TGG | - | chr7_3:79207017-79207036 | None:intergenic | 40.0% |
| !! | CGAATGATGGAATTGGTTTG+AGG | - | chr7_3:79207022-79207041 | None:intergenic | 40.0% |
| ACCAATTCCATCATTCGACA+AGG | + | chr7_3:79207025-79207044 | Msa1127580:CDS | 40.0% | |
| CTCCTTATATACCTCTCTGT+CGG | + | chr7_3:79207058-79207077 | Msa1127580:CDS | 40.0% | |
| ATATTATGACACCGACAGAG+AGG | - | chr7_3:79207072-79207091 | None:intergenic | 40.0% | |
| !! | GATTTTAACCGGGCTTCAAA+TGG | + | chr7_3:79207315-79207334 | Msa1127580:CDS | 40.0% |
| ATGTTGCAAAAGGTAGGATG+AGG | + | chr7_3:79207377-79207396 | Msa1127580:CDS | 40.0% | |
| CAAAAGGTAGGATGAGGATT+AGG | + | chr7_3:79207383-79207402 | Msa1127580:CDS | 40.0% | |
| !! | TAGGATGAGGATTAGGTTGA+AGG | + | chr7_3:79207390-79207409 | Msa1127580:CDS | 40.0% |
| !! | ATGAGGATTAGGTTGAAGGT+TGG | + | chr7_3:79207394-79207413 | Msa1127580:CDS | 40.0% |
| !! | TTGAAGGTTGGTTTAGCACT+TGG | + | chr7_3:79207406-79207425 | Msa1127580:CDS | 40.0% |
| !!! | GTGGTTTTGTGTATTGGTGT+TGG | + | chr7_3:79207433-79207452 | Msa1127580:CDS | 40.0% |
| !! | GTTTTGTTGAGGGTTTAGAC+TGG | + | chr7_3:79207470-79207489 | Msa1127580:CDS | 40.0% |
| GGCTGTTATGTCTGTTACAA+CGG | + | chr7_3:79207510-79207529 | Msa1127580:CDS | 40.0% | |
| GTTATGTCTGTTACAACGGT+TGG | + | chr7_3:79207514-79207533 | Msa1127580:CDS | 40.0% | |
| ! | TCTGTTACAACGGTTGGTTA+TGG | + | chr7_3:79207520-79207539 | Msa1127580:CDS | 40.0% |
| !!! | AGAGCTTTTAAGACTCTTCC+GGG | + | chr7_3:79207547-79207566 | Msa1127580:CDS | 40.0% |
| !! | GGCTTTTCTTTATTTGGCTG+AGG | + | chr7_3:79207621-79207640 | Msa1127580:CDS | 40.0% |
| ! | ACATAGGAGATTGGCTAAGA+AGG | + | chr7_3:79207660-79207679 | Msa1127580:CDS | 40.0% |
| GCTGCTGATATCAACAATAC+TGG | + | chr7_3:79207718-79207737 | Msa1127580:CDS | 40.0% | |
| CATTGCAATCCCTGCTATTA+TGG | + | chr7_3:79208047-79208066 | Msa1127580:intron | 40.0% | |
| CCGCAATGTAACCATAATTG+TGG | - | chr7_3:79208102-79208121 | None:intergenic | 40.0% | |
| ! | TCTGGTAAAGTGCTAATTGG+GGG | + | chr7_3:79208263-79208282 | Msa1127580:intron | 40.0% |
| TGACGACCAAAATTGCTATC+AGG | - | chr7_3:79208289-79208308 | None:intergenic | 40.0% | |
| GCATCATAGTACACAAGTAG+GGG | + | chr7_3:79208620-79208639 | Msa1127580:intron | 40.0% | |
| GTTATCTTCCCACAGTTAGA+GGG | - | chr7_3:79208875-79208894 | None:intergenic | 40.0% | |
| TGTTATCTTCCCACAGTTAG+AGG | - | chr7_3:79208876-79208895 | None:intergenic | 40.0% | |
| AACATTACCTCATCTCTTGG+AGG | + | chr7_3:79208892-79208911 | Msa1127580:CDS | 40.0% | |
| ACATTACCTCATCTCTTGGA+GGG | + | chr7_3:79208893-79208912 | Msa1127580:CDS | 40.0% | |
| GGACCTATCATGAATATACC+AGG | + | chr7_3:79209091-79209110 | Msa1127580:three_prime_UTR | 40.0% | |
| GAAGGATTTGGAAGAAGGGA+AGG | - | chr7_3:79206792-79206811 | None:intergenic | 45.0% | |
| GGCTATGTCGTTGAAGGATT+TGG | - | chr7_3:79206804-79206823 | None:intergenic | 45.0% | |
| !! | TGGTGGTGGTTGTTGTTGTA+GGG | - | chr7_3:79206828-79206847 | None:intergenic | 45.0% |
| ATCTCAGATGATTGTGGTGG+TGG | - | chr7_3:79206848-79206867 | None:intergenic | 45.0% | |
| !! | TGTTGTTGGTGGTGTTGTTG+TGG | - | chr7_3:79206890-79206909 | None:intergenic | 45.0% |
| AAGGTGTGGGAGAATGAACA+TGG | - | chr7_3:79206966-79206985 | None:intergenic | 45.0% | |
| ! | GTTTGAGGTTTGGGAAGTTG+AGG | - | chr7_3:79207007-79207026 | None:intergenic | 45.0% |
| ! | GCCTTGTCGAATGATGGAAT+TGG | - | chr7_3:79207029-79207048 | None:intergenic | 45.0% |
| CCAAATGCCTTGTCGAATGA+TGG | - | chr7_3:79207035-79207054 | None:intergenic | 45.0% | |
| ! | CCATCATTCGACAAGGCATT+TGG | + | chr7_3:79207032-79207051 | Msa1127580:CDS | 45.0% |
| ! | CACCGACAGAGAGGTATATA+AGG | - | chr7_3:79207063-79207082 | None:intergenic | 45.0% |
| TTCAAATGGGTGCTAGGGAA+GGG | + | chr7_3:79207329-79207348 | Msa1127580:CDS | 45.0% | |
| ! | TAGGGAAGGGTTTTCTGCTA+GGG | + | chr7_3:79207342-79207361 | Msa1127580:CDS | 45.0% |
| !!! | GGTGTGGTGGTTTTGTGTAT+TGG | + | chr7_3:79207427-79207446 | Msa1127580:CDS | 45.0% |
| !! | GTGTATTGGTGTTGGGAGTT+TGG | + | chr7_3:79207441-79207460 | Msa1127580:CDS | 45.0% |
| GACGATTGTTTGCCGCAATT+TGG | + | chr7_3:79207569-79207588 | Msa1127580:CDS | 45.0% | |
| TGGTTTATAATTGTGGCGCG+CGG | + | chr7_3:79208011-79208030 | Msa1127580:intron | 45.0% | |
| AGCTGATGCGACCACAATTA+TGG | + | chr7_3:79208088-79208107 | Msa1127580:intron | 45.0% | |
| AAGCTTGATCCCTCTAACTG+TGG | + | chr7_3:79208863-79208882 | Msa1127580:CDS | 45.0% | |
| AGCTTGATCCCTCTAACTGT+GGG | + | chr7_3:79208864-79208883 | Msa1127580:CDS | 45.0% | |
| TAGGGTGGCTATGTCGTTGA+AGG | - | chr7_3:79206810-79206829 | None:intergenic | 50.0% | |
| ! | TGGTGGTTGTTGTTGTAGGG+TGG | - | chr7_3:79206825-79206844 | None:intergenic | 50.0% |
| !! | GTGGTGGTGGTTGTTGTTGT+AGG | - | chr7_3:79206829-79206848 | None:intergenic | 50.0% |
| !! | TCAGATGATTGTGGTGGTGG+TGG | - | chr7_3:79206845-79206864 | None:intergenic | 50.0% |
| TGTGGGAGAATGAACATGGC+TGG | - | chr7_3:79206962-79206981 | None:intergenic | 50.0% | |
| GAGGTTTGGGAAGTTGAGGT+TGG | - | chr7_3:79207003-79207022 | None:intergenic | 50.0% | |
| CTTCAAATGGGTGCTAGGGA+AGG | + | chr7_3:79207328-79207347 | Msa1127580:CDS | 50.0% | |
| ! | CTAGGGAAGGGTTTTCTGCT+AGG | + | chr7_3:79207341-79207360 | Msa1127580:CDS | 50.0% |
| !! | GGTTGGTTTAGCACTTGGTG+TGG | + | chr7_3:79207411-79207430 | Msa1127580:CDS | 50.0% |
| !! | TGGTTTAGCACTTGGTGTGG+TGG | + | chr7_3:79207414-79207433 | Msa1127580:CDS | 50.0% |
| ATTGCGGCAAACAATCGTCC+CGG | - | chr7_3:79207568-79207587 | None:intergenic | 50.0% | |
| ! | TGGGGGCCTGATAGCAATTT+TGG | + | chr7_3:79208280-79208299 | Msa1127580:intron | 50.0% |
| TACCTCATCTCTTGGAGGGT+AGG | + | chr7_3:79208897-79208916 | Msa1127580:CDS | 50.0% | |
| !! | GATGATTGTGGTGGTGGTGG+TGG | - | chr7_3:79206842-79206861 | None:intergenic | 55.0% |
| !!! | TGGCTGGTGCTGTTTTGCAG+CGG | - | chr7_3:79206946-79206965 | None:intergenic | 55.0% |
| ! | CCTAGCACCCATTTGAAGCC+CGG | - | chr7_3:79207326-79207345 | None:intergenic | 55.0% |
| CGGGCTTCAAATGGGTGCTA+GGG | + | chr7_3:79207324-79207343 | Msa1127580:CDS | 55.0% | |
| TTGCAATTGCGGCCGCATCA+AGG | - | chr7_3:79208145-79208164 | None:intergenic | 55.0% | |
| TGCGGCCGCAATTGCAATTG+TGG | + | chr7_3:79208148-79208167 | Msa1127580:intron | 55.0% | |
| GACCTACCCTCCAAGAGATG+AGG | - | chr7_3:79208902-79208921 | None:intergenic | 55.0% | |
| CCGGGCTTCAAATGGGTGCT+AGG | + | chr7_3:79207323-79207342 | Msa1127580:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 79206655 | 79209160 | 79206655 | ID=Msa1127580;Name=Msa1127580 |
| chr7_3 | mRNA | 79206655 | 79209160 | 79206655 | ID=Msa1127580-mRNA-1;Parent=Msa1127580;Name=Msa1127580-mRNA-1;_AED=0.00;_eAED=0.00;_QI=85|1|1|1|1|1|2|235|385 |
| chr7_3 | exon | 79206655 | 79207749 | 79206655 | ID=Msa1127580-mRNA-1:exon:22358;Parent=Msa1127580-mRNA-1 |
| chr7_3 | exon | 79208778 | 79209160 | 79208778 | ID=Msa1127580-mRNA-1:exon:22359;Parent=Msa1127580-mRNA-1 |
| chr7_3 | five_prime_UTR | 79206655 | 79206739 | 79206655 | ID=Msa1127580-mRNA-1:five_prime_utr;Parent=Msa1127580-mRNA-1 |
| chr7_3 | CDS | 79206740 | 79207749 | 79206740 | ID=Msa1127580-mRNA-1:cds;Parent=Msa1127580-mRNA-1 |
| chr7_3 | CDS | 79208778 | 79208925 | 79208778 | ID=Msa1127580-mRNA-1:cds;Parent=Msa1127580-mRNA-1 |
| chr7_3 | three_prime_UTR | 79208926 | 79209160 | 79208926 | ID=Msa1127580-mRNA-1:three_prime_utr;Parent=Msa1127580-mRNA-1 |
| Gene Sequence |
| Protein sequence |
