AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0942550


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0942550 MtrunA17_Chr6g0459071 98.039 306 1 1 1 301 1 306 0.0 614
Msa0942550 MtrunA17_Chr6g0459091 91.531 307 20 2 1 301 1 307 0.0 577
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0942550 AT3G27240.1 85.621 306 39 1 1 301 2 307 3.90e-178 494
Msa0942550 AT5G40810.1 84.641 306 42 1 1 301 2 307 9.80e-178 493
Msa0942550 AT5G40810.2 90.769 260 19 1 47 301 1 260 3.30e-162 452

Find 121 sgRNAs with CRISPR-Local

Find 422 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGCTGGTGTCTCAGGTCTTT+TGG 0.163244 6_3:-17572162 Msa0942550:CDS
TTTATATATGAAACTGTTAT+TGG 0.165636 6_3:-17569225 Msa0942550:three_prime_UTR
TTAAGAGCCCTTGCTTTAAT+TGG 0.175578 6_3:-17572185 Msa0942550:CDS
TTCTGTAACTCCAACGAATT+TGG 0.201397 6_3:+17569587 None:intergenic
ACTTGCAGATGGGATTTAAA+TGG 0.252277 6_3:-17569783 Msa0942550:intron
TTGGGACTTGGGAGGTGTTT+GGG 0.294675 6_3:+17576021 None:intergenic
TGGATATTGCTGTATAATAA+AGG 0.298145 6_3:-17569119 None:intergenic
GAGTGTCAGAATGTTCTTAT+TGG 0.313681 6_3:-17569360 Msa0942550:three_prime_UTR
TAAAATGCATCTCACATATA+TGG 0.326001 6_3:+17569525 None:intergenic
ATTGGGACTTGGGAGGTGTT+TGG 0.328159 6_3:+17576020 None:intergenic
ATGGATATTTGTACTTTCAT+TGG 0.329694 6_3:-17569764 Msa0942550:CDS
AGAATGTTCTTATTGGAAAC+TGG 0.336407 6_3:-17569353 Msa0942550:three_prime_UTR
ATGGCTCCACCAGGGAAATA+AGG 0.352039 6_3:+17570130 None:intergenic
TATGTGTTTGCTCTCCTAAC+TGG 0.353553 6_3:-17570775 Msa0942550:CDS
TTAGACATTTGTTAAGTGAT+TGG 0.359787 6_3:-17569425 Msa0942550:three_prime_UTR
AATTAAAGCAAGGGCTCTTA+AGG 0.362156 6_3:+17572187 None:intergenic
GAATTTGGCATGACGAGAAT+TGG 0.369422 6_3:+17569602 None:intergenic
CTACATACACTTATATAATC+TGG 0.372083 6_3:-17569452 Msa0942550:three_prime_UTR
ACAACATAATAAAATTGAAT+TGG 0.376817 6_3:+17569315 None:intergenic
TAGACATTTGTTAAGTGATT+GGG 0.377081 6_3:-17569424 Msa0942550:three_prime_UTR
AACATCTCACCCTCATCATT+GGG 0.377350 6_3:+17571014 None:intergenic
GTCTCAAAGAAAGACGGTTC+TGG 0.381617 6_3:-17572227 Msa0942550:CDS
TTAATTGGAGCTGGTGTCTC+AGG 0.388344 6_3:-17572170 Msa0942550:CDS
GTGATTGAAGAAGAGTCAAT+TGG 0.393532 6_3:+17576002 None:intergenic
TTCTTACCAGAGAATGAGAT+TGG 0.400483 6_3:+17574198 None:intergenic
CTCTCTGCAGCTTCTCTCTC+CGG 0.401840 6_3:-17575963 Msa0942550:five_prime_UTR
AAAGCGATCACTGAGTTTAC+CGG 0.403522 6_3:+17570983 None:intergenic
AAACATCTCACCCTCATCAT+TGG 0.411590 6_3:+17571013 None:intergenic
TTTGATATCATACCGTGATT+TGG 0.414012 6_3:-17571100 Msa0942550:CDS
CATTACAATCCTTATTTCCC+TGG 0.414300 6_3:-17570139 Msa0942550:CDS
GCAGCTGATTCATTTGCATA+TGG 0.415455 6_3:+17570954 None:intergenic
GCGCCATCATTAAGCATCTT+AGG 0.416554 6_3:+17570100 None:intergenic
TTACGAAATGGAAGCGCGAT+TGG 0.440990 6_3:+17575922 None:intergenic
AGTACCTGAGCTTCGGTAGC+AGG 0.443562 6_3:+17570055 None:intergenic
TACGAAATGGAAGCGCGATT+GGG 0.445237 6_3:+17575923 None:intergenic
AAAGACGGTTCTGGCTCTAC+TGG 0.446521 6_3:-17572218 Msa0942550:CDS
GCCCTTGCTTTAATTGGAGC+TGG 0.448077 6_3:-17572179 Msa0942550:CDS
AAGAAGAGTCAATTGGGACT+TGG 0.450778 6_3:+17576009 None:intergenic
CCGCATACTATCGTCGTCTT+CGG 0.462299 6_3:-17569729 Msa0942550:CDS
GGAAGAGAGAGGATCGAATC+CGG 0.467481 6_3:+17575944 None:intergenic
GAAACTCCAATCTCATTCTC+TGG 0.472075 6_3:-17574204 Msa0942550:intron
TGAGATGGAAGAGCGAAAAC+TGG 0.475157 6_3:-17569880 Msa0942550:intron
GATACTTATACCAACATACT+TGG 0.476088 6_3:+17569190 None:intergenic
TCAGCTGCTAGGTTTGCTAA+TGG 0.483837 6_3:-17570939 Msa0942550:CDS
ATACTTATACCAACATACTT+GGG 0.486119 6_3:+17569191 None:intergenic
AGAAGAAGAGGTAAAGGCTA+TGG 0.498278 6_3:-17571063 Msa0942550:CDS
TATCAAAGACATGGAATGGC+AGG 0.507429 6_3:+17571116 None:intergenic
TCTCGTCATGCCAAATTCGT+TGG 0.509698 6_3:-17569597 Msa0942550:three_prime_UTR
TCATAAAAGTACCTGAGCTT+CGG 0.512637 6_3:+17570048 None:intergenic
GGCATGGCAATGGCTCCACC+AGG 0.514815 6_3:+17570121 None:intergenic
TTGGTAATAAGACTTAGATC+AGG 0.519781 6_3:+17570903 None:intergenic
ACCGTCTTTCTTTGAGACAA+TGG 0.522311 6_3:+17572232 None:intergenic
AGAAGAGTCAATTGGGACTT+GGG 0.525895 6_3:+17576010 None:intergenic
AATACACATGTTTGAGAAGA+GGG 0.527196 6_3:+17569494 None:intergenic
GTACCTGAGCTTCGGTAGCA+GGG 0.529146 6_3:+17570056 None:intergenic
TGATTGAAGAAGAGTCAATT+GGG 0.529880 6_3:+17576003 None:intergenic
GGCTATGGCAGCTGAGATTG+AGG 0.530766 6_3:-17571048 Msa0942550:CDS
GCTTACAGAAGAAGAGGTAA+AGG 0.532451 6_3:-17571069 Msa0942550:intron
ATATAAGTGTATGTAGGTCC+TGG 0.537436 6_3:+17569459 None:intergenic
ATGATATCAAAGACATGGAA+TGG 0.537539 6_3:+17571112 None:intergenic
GCTGAGATTGAGGTGGAAGA+TGG 0.539723 6_3:-17571038 Msa0942550:CDS
GATTCATTTGCATATGGCTG+AGG 0.541130 6_3:+17570960 None:intergenic
TACCCCTGCTACCGAAGCTC+AGG 0.543312 6_3:-17570059 Msa0942550:intron
ATAATAATGTAGATCAGAGA+AGG 0.546231 6_3:-17570166 Msa0942550:intron
ACAGTCTGAACAGAGATGGC+TGG 0.550214 6_3:-17574254 Msa0942550:intron
GAATATACCGAAATACCAGC+AGG 0.552545 6_3:+17570739 None:intergenic
TACAATCCTTATTTCCCTGG+TGG 0.554688 6_3:-17570136 Msa0942550:CDS
AAGCGATCACTGAGTTTACC+GGG 0.554889 6_3:+17570984 None:intergenic
TCGCATCTCCACACTATCCA+TGG 0.559094 6_3:-17572097 Msa0942550:CDS
TGTTCTTAAGTCTCGCAAGT+TGG 0.563450 6_3:-17569701 Msa0942550:CDS
AAGACTTAGATCAGGAGGAT+AGG 0.563590 6_3:+17570911 None:intergenic
TTGGGCAGCAGAACCTGAGA+TGG 0.563754 6_3:-17569895 Msa0942550:CDS
CAGATTATATAAGTGTATGT+AGG 0.566337 6_3:+17569453 None:intergenic
AGGATTCCCTCGTGAGGCCA+TGG 0.566894 6_3:+17572080 None:intergenic
ATCATTAAGCATCTTAGGCA+TGG 0.575465 6_3:+17570105 None:intergenic
ATGCAAATGAATCAGCTGCT+AGG 0.576296 6_3:-17570950 Msa0942550:CDS
GGTGAGATGTTTACACGCCC+CGG 0.579989 6_3:-17571002 Msa0942550:CDS
GGTGTTGCTTACAGAAGAAG+AGG 0.583439 6_3:-17571075 Msa0942550:intron
CACCAGCTCCAATTAAAGCA+AGG 0.593167 6_3:+17572177 None:intergenic
AAATACACATGTTTGAGAAG+AGG 0.595794 6_3:+17569493 None:intergenic
TCAGCTGATGAAGCTGAGCA+TGG 0.598104 6_3:-17572122 Msa0942550:CDS
AATGAAGACCCCAAGTATGT+TGG 0.598413 6_3:-17569200 Msa0942550:three_prime_UTR
GTGTATGTAGGTCCTGGAGG+AGG 0.598701 6_3:+17569465 None:intergenic
TCCATTGTCTCAAAGAAAGA+CGG 0.601122 6_3:-17572233 Msa0942550:CDS
CATACTATCGTCGTCTTCGG+TGG 0.604083 6_3:-17569726 Msa0942550:CDS
GTAATAAGACTTAGATCAGG+AGG 0.606361 6_3:+17570906 None:intergenic
ACCAGCTCCAATTAAAGCAA+GGG 0.607014 6_3:+17572178 None:intergenic
ATCCACAGTCTGAACAGAGA+TGG 0.609865 6_3:-17574258 Msa0942550:intron
TCGTGAGGCCATGGATAGTG+TGG 0.617512 6_3:+17572089 None:intergenic
ATATCATACCGTGATTTGGT+TGG 0.618625 6_3:-17571096 Msa0942550:intron
AAGCATCTTAGGCATGGCAA+TGG 0.619124 6_3:+17570111 None:intergenic
TACTTATACCAACATACTTG+GGG 0.620209 6_3:+17569192 None:intergenic
GAGACAATGGATGATACAGA+AGG 0.620313 6_3:+17572245 None:intergenic
TACCTGAGCTTCGGTAGCAG+GGG 0.625058 6_3:+17570057 None:intergenic
GGCGCTGTTGAATATGAAGA+TGG 0.625884 6_3:-17570082 Msa0942550:CDS
ACACTATCCATGGCCTCACG+AGG 0.626043 6_3:-17572087 Msa0942550:CDS
ACGGTATGATATCAAAGACA+TGG 0.629932 6_3:+17571107 None:intergenic
ATGCCTAAGATGCTTAATGA+TGG 0.630986 6_3:-17570103 Msa0942550:CDS
GGAAGATGGCCCCAATGATG+AGG 0.644119 6_3:-17571024 Msa0942550:CDS
GCTGCTAGGTTTGCTAATGG+AGG 0.646946 6_3:-17570936 Msa0942550:CDS
AGAGTCAATTGGGACTTGGG+AGG 0.651192 6_3:+17576013 None:intergenic
AATATACCGAAATACCAGCA+GGG 0.651584 6_3:+17570740 None:intergenic
ATATACCGAAATACCAGCAG+GGG 0.655558 6_3:+17570741 None:intergenic
AAGCAACACCAACCAAATCA+CGG 0.657890 6_3:+17571088 None:intergenic
ATGGATAGTGTGGAGATGCG+AGG 0.659382 6_3:+17572099 None:intergenic
GTCTGAACAGAGATGGCTGG+AGG 0.660770 6_3:-17574251 Msa0942550:exon
CACTATCCATGGCCTCACGA+GGG 0.662222 6_3:-17572086 Msa0942550:CDS
GAAGATGGCCCCAATGATGA+GGG 0.664245 6_3:-17571023 Msa0942550:CDS
ACATCTCACCCTCATCATTG+GGG 0.664508 6_3:+17571015 None:intergenic
TAAGTGTATGTAGGTCCTGG+AGG 0.685220 6_3:+17569462 None:intergenic
GTGTATAAACTTGATGACCA+CGG 0.686663 6_3:+17571151 None:intergenic
TATACCGAAATACCAGCAGG+GGG 0.699409 6_3:+17570742 None:intergenic
AAGCGTGATCATATGAACTG+AGG 0.699683 6_3:+17572060 None:intergenic
TATGGCAGCTGAGATTGAGG+TGG 0.700807 6_3:-17571045 Msa0942550:CDS
AAGCGCGATTGGGAAGAGAG+AGG 0.701234 6_3:+17575933 None:intergenic
GCATGGCAATGGCTCCACCA+GGG 0.715609 6_3:+17570122 None:intergenic
GAACTGAGGATTCCCTCGTG+AGG 0.723147 6_3:+17572074 None:intergenic
CCGAAGACGACGATAGTATG+CGG 0.728381 6_3:+17569729 None:intergenic
AGCGATCACTGAGTTTACCG+GGG 0.742025 6_3:+17570985 None:intergenic
TGTATGGACAGGATTCGCCG+TGG 0.758824 6_3:-17571168 Msa0942550:intron
ATACCGAAATACCAGCAGGG+GGG 0.810875 6_3:+17570743 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GTTTTTTTTTTTTTTTGTAT+TGG - chr6_3:17569591-17569610 Msa0942550:three_prime_UTR 10.0%
!!! AATTGAAATTTTAAAGTTAA+GGG - chr6_3:17570184-17570203 Msa0942550:intron 10.0%
!! GTATTATTTATAGAAATAAA+AGG + chr6_3:17573826-17573845 None:intergenic 10.0%
!! TAATAATTATCTATCAATTT+AGG - chr6_3:17575172-17575191 Msa0942550:intron 10.0%
!!! TTAGTTGTAATTTTATTCAT+TGG - chr6_3:17569496-17569515 Msa0942550:three_prime_UTR 15.0%
!! TAATGAATAAAGTAATAGTT+TGG - chr6_3:17569959-17569978 Msa0942550:intron 15.0%
!!! CTTATTTTTTAGTTTAAGTT+TGG - chr6_3:17570005-17570024 Msa0942550:intron 15.0%
!!! GTAACTTTAAAAGTTTTAAT+CGG - chr6_3:17570035-17570054 Msa0942550:intron 15.0%
!!! TAACTTTAAAAGTTTTAATC+GGG - chr6_3:17570036-17570055 Msa0942550:intron 15.0%
!!! CAATTGAAATTTTAAAGTTA+AGG - chr6_3:17570183-17570202 Msa0942550:intron 15.0%
!!! CTAATTTTATACGTAATTAT+GGG + chr6_3:17572145-17572164 None:intergenic 15.0%
!! AGAATAAATTTAAACTCTAA+AGG + chr6_3:17572463-17572482 None:intergenic 15.0%
!! TTAATACTATAAATAGGAAT+CGG - chr6_3:17572502-17572521 Msa0942550:intron 15.0%
!!! GTGAATATTTTTTATTGTTA+TGG - chr6_3:17572779-17572798 Msa0942550:intron 15.0%
!!! AATATTTTTTATTGTTATGG+TGG - chr6_3:17572782-17572801 Msa0942550:intron 15.0%
!!! GCATTAAATATTTTACAAAT+TGG + chr6_3:17574641-17574660 None:intergenic 15.0%
!! ATTTATAAAAAGATTACTGT+TGG - chr6_3:17575524-17575543 Msa0942550:intron 15.0%
!! ACAACATAATAAAATTGAAT+TGG + chr6_3:17575848-17575867 None:intergenic 15.0%
!! TTTATATATGAAACTGTTAT+TGG - chr6_3:17575935-17575954 Msa0942550:five_prime_UTR 15.0%
!! ACTATGAGAAATGAAAAAAT+TGG + chr6_3:17569321-17569340 None:intergenic 20.0%
!! ATCATTCATATTTCATAAAC+TGG + chr6_3:17569560-17569579 None:intergenic 20.0%
!!! TTTTTTTGGAGTTTAGATTT+TGG - chr6_3:17569665-17569684 Msa0942550:exon 20.0%
!! GCAATCAAATTATAATGTAA+AGG + chr6_3:17569697-17569716 None:intergenic 20.0%
!! CTAACACAATTTAAACAAAA+AGG + chr6_3:17570094-17570113 None:intergenic 20.0%
!! TTGTTTAAATTGTGTTAGAA+AGG - chr6_3:17570096-17570115 Msa0942550:CDS 20.0%
!! TGTTTAAATTGTGTTAGAAA+GGG - chr6_3:17570097-17570116 Msa0942550:CDS 20.0%
!!! TATAAAAGTATCATGAATAG+AGG + chr6_3:17570994-17571013 None:intergenic 20.0%
!!! ATTTTAAATCCCATAAGATA+AGG + chr6_3:17571042-17571061 None:intergenic 20.0%
!! AAGATAAATTCGAAAATGAA+AGG - chr6_3:17571485-17571504 Msa0942550:intron 20.0%
!! ATTAGGTTCTATCATTTAAT+GGG - chr6_3:17571600-17571619 Msa0942550:intron 20.0%
!! GAAAACAAAACAAAACAATT+TGG + chr6_3:17571645-17571664 None:intergenic 20.0%
!!! TCTATTTTATTCTGGTAAAT+AGG - chr6_3:17572029-17572048 Msa0942550:intron 20.0%
!!! TCTTATTTAACTACTTAGTA+TGG - chr6_3:17572103-17572122 Msa0942550:CDS 20.0%
!!! CCTAATTTTATACGTAATTA+TGG + chr6_3:17572146-17572165 None:intergenic 20.0%
!! CCATAATTACGTATAAAATT+AGG - chr6_3:17572143-17572162 Msa0942550:CDS 20.0%
!! ACTGAAAAAAATTAGGTAAT+TGG - chr6_3:17572222-17572241 Msa0942550:CDS 20.0%
!! CTGAAAAAAATTAGGTAATT+GGG - chr6_3:17572223-17572242 Msa0942550:CDS 20.0%
!! GTAAATTAAACATTTACCTA+TGG + chr6_3:17573246-17573265 None:intergenic 20.0%
!! GCTGAAAAAAATTAAAACTA+GGG + chr6_3:17573287-17573306 None:intergenic 20.0%
!! TGGTTAAAAACTTAAAATCT+TGG - chr6_3:17573366-17573385 Msa0942550:intron 20.0%
!! AGAATAAAACAAAGCAATAA+AGG + chr6_3:17573859-17573878 None:intergenic 20.0%
!! AGTTCAGATTAAATATATGA+TGG + chr6_3:17573918-17573937 None:intergenic 20.0%
!!! ATATATTAGCTGATTTTGTA+TGG - chr6_3:17573976-17573995 Msa0942550:intron 20.0%
!! TTCATACTATATAAAACCTA+AGG + chr6_3:17574311-17574330 None:intergenic 20.0%
!!! CTGTATTTAGTCTTAAAAAA+AGG + chr6_3:17574456-17574475 None:intergenic 20.0%
!!! CATTTAAAAGCACAATTTTT+TGG + chr6_3:17574552-17574571 None:intergenic 20.0%
!! TATTGAAAGAAAATCATCTA+TGG + chr6_3:17574690-17574709 None:intergenic 20.0%
!! AAATAAAAAACAAAGCTTGA+AGG + chr6_3:17575508-17575527 None:intergenic 20.0%
!! TTATCTTCAGTAAAGAAAAA+AGG - chr6_3:17575770-17575789 Msa0942550:intron 20.0%
!! TATCTTCAGTAAAGAAAAAA+GGG - chr6_3:17575771-17575790 Msa0942550:intron 20.0%
!! GAATGGAAAATGAATAAAAA+TGG - chr6_3:17576021-17576040 Msa0942550:five_prime_UTR 20.0%
!!! TTTTTTTTGTCTTTCACTGT+AGG + chr6_3:17569924-17569943 None:intergenic 25.0%
!!! AGCTAGTTTTGGTTTTAATA+TGG - chr6_3:17570067-17570086 Msa0942550:CDS 25.0%
! TTCGTGAAAGTTTATCAATT+TGG + chr6_3:17570124-17570143 None:intergenic 25.0%
! TGATAAACTTTCACGAAATA+AGG - chr6_3:17570127-17570146 Msa0942550:CDS 25.0%
! GATAAACTTTCACGAAATAA+GGG - chr6_3:17570128-17570147 Msa0942550:CDS 25.0%
!!! CTAACTTCTTATTTTCAGTT+TGG + chr6_3:17570211-17570230 None:intergenic 25.0%
! TGAAAATAAGAAGTTAGACA+AGG - chr6_3:17570214-17570233 Msa0942550:intron 25.0%
! GAAAATAAGAAGTTAGACAA+GGG - chr6_3:17570215-17570234 Msa0942550:intron 25.0%
!! AAAGACATCTTTTAATGTGT+TGG - chr6_3:17570403-17570422 Msa0942550:intron 25.0%
!! AAGACATCTTTTAATGTGTT+GGG - chr6_3:17570404-17570423 Msa0942550:intron 25.0%
!! TGAAATTTCTTCAGTTTTCA+TGG - chr6_3:17570466-17570485 Msa0942550:intron 25.0%
! TCTCATGTTATAAGATTATG+TGG - chr6_3:17570491-17570510 Msa0942550:intron 25.0%
! GAAAAGATAGACAATACAAA+AGG + chr6_3:17570545-17570564 None:intergenic 25.0%
!!! AAATTTTGACAAGAAGAATG+TGG + chr6_3:17570567-17570586 None:intergenic 25.0%
! ATGTTAAACACTCGATAAAT+AGG + chr6_3:17570619-17570638 None:intergenic 25.0%
! TATTTATCGAGTGTTTAACA+TGG - chr6_3:17570618-17570637 Msa0942550:intron 25.0%
! GTATTTCAAATTTCATATCG+TGG + chr6_3:17570673-17570692 None:intergenic 25.0%
!! TTCTGGCAATTTTCTTTTAT+GGG - chr6_3:17570703-17570722 Msa0942550:intron 25.0%
!!! TTTTATGGGTTCATTTTTCA+TGG - chr6_3:17570717-17570736 Msa0942550:intron 25.0%
! AAAATGAGTTTATGTAGTGA+TGG + chr6_3:17570775-17570794 None:intergenic 25.0%
! TGTTCATACAAAAAAGACTA+AGG + chr6_3:17570882-17570901 None:intergenic 25.0%
!!! GTGTTTTTCAACAATTATTG+AGG - chr6_3:17570931-17570950 Msa0942550:CDS 25.0%
!!! TTTTTCAACAATTATTGAGG+AGG - chr6_3:17570934-17570953 Msa0942550:CDS 25.0%
!!! ATTTTGTTATACATATGCGA+GGG - chr6_3:17571102-17571121 Msa0942550:CDS 25.0%
!! CAACAGTTTTACTGATAAAT+TGG + chr6_3:17571224-17571243 None:intergenic 25.0%
! CAATTTATCAGTAAAACTGT+TGG - chr6_3:17571222-17571241 Msa0942550:intron 25.0%
! ATGATAAACTAGTAATGCAA+GGG + chr6_3:17571363-17571382 None:intergenic 25.0%
! AATGATAAACTAGTAATGCA+AGG + chr6_3:17571364-17571383 None:intergenic 25.0%
! CATTAAATGATAGAACCTAA+TGG + chr6_3:17571601-17571620 None:intergenic 25.0%
! CATTAGGTTCTATCATTTAA+TGG - chr6_3:17571599-17571618 Msa0942550:intron 25.0%
! TGTCTTAATTTACTCTCAAA+TGG - chr6_3:17571704-17571723 Msa0942550:intron 25.0%
!! ACAGTATGTCTATTTTATTC+TGG - chr6_3:17572021-17572040 Msa0942550:intron 25.0%
! AGTAGTTAAATAAGATCATG+AGG + chr6_3:17572098-17572117 None:intergenic 25.0%
!!! TACCTAATTTTTTTCAGTCA+GGG + chr6_3:17572220-17572239 None:intergenic 25.0%
!!! TTACCTAATTTTTTTCAGTC+AGG + chr6_3:17572221-17572240 None:intergenic 25.0%
!! TATCCAAGTTTAACTTTAGA+TGG - chr6_3:17572633-17572652 Msa0942550:intron 25.0%
!! AATCCATCTAAAGTTAAACT+TGG + chr6_3:17572639-17572658 None:intergenic 25.0%
! AATAAGCTTATCATGAAAGA+TGG + chr6_3:17572738-17572757 None:intergenic 25.0%
!! ATTGTCATTGATTGTCATAT+TGG - chr6_3:17572755-17572774 Msa0942550:intron 25.0%
! TATTAGAAAAAGACATGATC+AGG + chr6_3:17572871-17572890 None:intergenic 25.0%
!!! AGTTTTTCCTTCGTTTTTTT+TGG - chr6_3:17573138-17573157 Msa0942550:intron 25.0%
! GTACGTTTAAGCAAAATAAA+AGG + chr6_3:17573170-17573189 None:intergenic 25.0%
! GGCTGAAAAAAATTAAAACT+AGG + chr6_3:17573288-17573307 None:intergenic 25.0%
!!! GTTTTAATTTTTTTCAGCCT+TGG - chr6_3:17573289-17573308 Msa0942550:intron 25.0%
! TTAAGAGAAATAGAGAAAGT+GGG - chr6_3:17573651-17573670 Msa0942550:intron 25.0%
! TCAGATTAAATATATGATGG+AGG + chr6_3:17573915-17573934 None:intergenic 25.0%
!! ATATTTTACAAATTGGTGTG+TGG + chr6_3:17574634-17574653 None:intergenic 25.0%
! AAATCATCTATGGTATCAAA+AGG + chr6_3:17574680-17574699 None:intergenic 25.0%
! TTCGATATAATACTTTCATG+TGG - chr6_3:17574726-17574745 Msa0942550:intron 25.0%
! ATATAATACTTTCATGTGGA+TGG - chr6_3:17574730-17574749 Msa0942550:intron 25.0%
! ATAATAATGTAGATCAGAGA+AGG - chr6_3:17574994-17575013 Msa0942550:intron 25.0%
!!! TTTTATTTGTTGTTGCAGAT+GGG - chr6_3:17575218-17575237 Msa0942550:intron 25.0%
! ATGGATATTTGTACTTTCAT+TGG - chr6_3:17575396-17575415 Msa0942550:intron 25.0%
! TAAAATGCATCTCACATATA+TGG + chr6_3:17575638-17575657 None:intergenic 25.0%
! CAGATTATATAAGTGTATGT+AGG + chr6_3:17575710-17575729 None:intergenic 25.0%
! CTACATACACTTATATAATC+TGG - chr6_3:17575708-17575727 Msa0942550:intron 25.0%
!! TTAGACATTTGTTAAGTGAT+TGG - chr6_3:17575735-17575754 Msa0942550:intron 25.0%
!! TAGACATTTGTTAAGTGATT+GGG - chr6_3:17575736-17575755 Msa0942550:intron 25.0%
!!! TAAGTGATTGGGTTTATTTT+TGG - chr6_3:17575747-17575766 Msa0942550:intron 25.0%
! AGTAAAGAAAAAAGGGAAAA+GGG - chr6_3:17575778-17575797 Msa0942550:intron 25.0%
! ATACTTATACCAACATACTT+GGG + chr6_3:17575972-17575991 None:intergenic 25.0%
!!! CTGAATATTTCTTTTGAGAA+TGG - chr6_3:17576004-17576023 Msa0942550:five_prime_UTR 25.0%
TGATTGAAGAAGAGTCAATT+GGG + chr6_3:17569160-17569179 None:intergenic 30.0%
TACGCAACTATGCAAAATTA+GGG + chr6_3:17569391-17569410 None:intergenic 30.0%
ATACGCAACTATGCAAAATT+AGG + chr6_3:17569392-17569411 None:intergenic 30.0%
! ATTTTGCATAGTTGCGTATT+TGG - chr6_3:17569393-17569412 Msa0942550:three_prime_UTR 30.0%
! AATTTTATTCATTGGCGAGA+TGG - chr6_3:17569504-17569523 Msa0942550:three_prime_UTR 30.0%
! TTGGAGTTTAGATTTTGGAT+TGG - chr6_3:17569670-17569689 Msa0942550:exon 30.0%
!! TTGACTTTTAGAAGTTTCAG+TGG + chr6_3:17570242-17570261 None:intergenic 30.0%
! ACTGAAACTTCTAAAAGTCA+AGG - chr6_3:17570241-17570260 Msa0942550:intron 30.0%
!!! CTTGTTTTTTGGTTTCAGTT+CGG + chr6_3:17570269-17570288 None:intergenic 30.0%
GAACTGAAACCAAAAAACAA+GGG - chr6_3:17570268-17570287 Msa0942550:intron 30.0%
!!! ATCATATGTCCCTTGTTTTT+TGG + chr6_3:17570280-17570299 None:intergenic 30.0%
! AGACATCTTTTAATGTGTTG+GGG - chr6_3:17570405-17570424 Msa0942550:intron 30.0%
TGTACAACAAAAAACACCAA+TGG + chr6_3:17570433-17570452 None:intergenic 30.0%
TGTATAGTCTGTCTAATTCA+TGG + chr6_3:17570596-17570615 None:intergenic 30.0%
! GTTCTGGCAATTTTCTTTTA+TGG - chr6_3:17570702-17570721 Msa0942550:intron 30.0%
! ATGTTTCTGACCTTATCTTA+TGG - chr6_3:17571029-17571048 Msa0942550:CDS 30.0%
! TGTTTCTGACCTTATCTTAT+GGG - chr6_3:17571030-17571049 Msa0942550:CDS 30.0%
!! GATTTTGTTATACATATGCG+AGG - chr6_3:17571101-17571120 Msa0942550:CDS 30.0%
! AAATCAGAAGTTGTCTTTTC+TGG - chr6_3:17571125-17571144 Msa0942550:CDS 30.0%
TCAACAAGCATTATAAGACA+AGG + chr6_3:17571185-17571204 None:intergenic 30.0%
! AATTTTGCAAAAGAGTTTCC+AGG - chr6_3:17571302-17571321 Msa0942550:intron 30.0%
TATCTATGACTGTTAGATGA+GGG + chr6_3:17571331-17571350 None:intergenic 30.0%
ATATCTATGACTGTTAGATG+AGG + chr6_3:17571332-17571351 None:intergenic 30.0%
TTAGTGTCAACTAAACTCTT+GGG + chr6_3:17571410-17571429 None:intergenic 30.0%
ATTAGTGTCAACTAAACTCT+TGG + chr6_3:17571411-17571430 None:intergenic 30.0%
GAATTAAGCTTGATCATAGT+TGG + chr6_3:17571548-17571567 None:intergenic 30.0%
GTTCTATCATTTAATGGGAT+TGG - chr6_3:17571605-17571624 Msa0942550:intron 30.0%
!! CAAATCATAAGGTATTGCTA+CGG + chr6_3:17571780-17571799 None:intergenic 30.0%
TTGTAGAGATGCAAATCATA+AGG + chr6_3:17571791-17571810 None:intergenic 30.0%
ATTGCAATTGTAGTCATGAT+AGG + chr6_3:17571815-17571834 None:intergenic 30.0%
TAAAATAGACATACTGTTGC+TGG + chr6_3:17572018-17572037 None:intergenic 30.0%
AGAAGATACTAGATTAGTAG+CGG + chr6_3:17572071-17572090 None:intergenic 30.0%
TATACGTAATTATGGGTGAA+AGG + chr6_3:17572138-17572157 None:intergenic 30.0%
AAAATTAGGTAATTGGGAGT+TGG - chr6_3:17572229-17572248 Msa0942550:CDS 30.0%
!! TGTTCTAGAGTAACATGATT+TGG + chr6_3:17572415-17572434 None:intergenic 30.0%
!! GTAAATTCTTTTGACTGTTC+AGG - chr6_3:17572561-17572580 Msa0942550:intron 30.0%
! TTTTATAACAATGTGTCCCT+CGG - chr6_3:17572840-17572859 Msa0942550:intron 30.0%
GAATTGTCCAAAAAAAACGA+AGG + chr6_3:17573148-17573167 None:intergenic 30.0%
! CAAAACCATGAAAGCATAAT+AGG + chr6_3:17573328-17573347 None:intergenic 30.0%
!! ATTATGCTTTCATGGTTTTG+AGG - chr6_3:17573328-17573347 Msa0942550:intron 30.0%
! ATAGGACTCATCCTATTTTA+AGG - chr6_3:17573489-17573508 Msa0942550:intron 30.0%
!!! CTATTTTAAGGCTTTCTTCT+GGG - chr6_3:17573501-17573520 Msa0942550:intron 30.0%
GTTAAGAGAAATAGAGAAAG+TGG - chr6_3:17573650-17573669 Msa0942550:intron 30.0%
! GAATTTGTGTTATTGTTGAG+TGG - chr6_3:17573690-17573709 Msa0942550:intron 30.0%
AGAGAACATTAGTTCCTTTA+AGG - chr6_3:17573756-17573775 Msa0942550:intron 30.0%
ATGATATCAAAGACATGGAA+TGG + chr6_3:17574051-17574070 None:intergenic 30.0%
TTTGATATCATACCGTGATT+TGG - chr6_3:17574060-17574079 Msa0942550:intron 30.0%
! TTGGTAATAAGACTTAGATC+AGG + chr6_3:17574260-17574279 None:intergenic 30.0%
GCAGAAAATTGACATTACTT+TGG + chr6_3:17574279-17574298 None:intergenic 30.0%
TTTCTGCTAGTAATTTCCTT+AGG - chr6_3:17574292-17574311 Msa0942550:intron 30.0%
AAGAATGCAAGTTACTGTAA+TGG + chr6_3:17574479-17574498 None:intergenic 30.0%
! TTGTGCTTTTAAATGTTGTG+TGG - chr6_3:17574557-17574576 Msa0942550:intron 30.0%
GAAACATTAATATTGTGTGC+TGG + chr6_3:17574773-17574792 None:intergenic 30.0%
TTGTCAATCATGCACATATA+TGG - chr6_3:17574823-17574842 Msa0942550:intron 30.0%
!!! CTGCTCTTGATCTTTTTTTA+TGG - chr6_3:17574960-17574979 Msa0942550:intron 30.0%
!!! CTTTTATTTGTTGTTGCAGA+TGG - chr6_3:17575217-17575236 Msa0942550:intron 30.0%
!! TTTATTTGTTGTTGCAGATG+GGG - chr6_3:17575219-17575238 Msa0942550:intron 30.0%
!!! ATGTTGTGTCATTTTTGTCT+TGG - chr6_3:17575246-17575265 Msa0942550:intron 30.0%
!!! TGTTGTGTCATTTTTGTCTT+GGG - chr6_3:17575247-17575266 Msa0942550:intron 30.0%
CTGATAGAAGACGAAAATAA+AGG + chr6_3:17575313-17575332 None:intergenic 30.0%
AATACACATGTTTGAGAAGA+GGG + chr6_3:17575669-17575688 None:intergenic 30.0%
AAATACACATGTTTGAGAAG+AGG + chr6_3:17575670-17575689 None:intergenic 30.0%
CAGTAAAGAAAAAAGGGAAA+AGG - chr6_3:17575777-17575796 Msa0942550:intron 30.0%
AGAATGTTCTTATTGGAAAC+TGG - chr6_3:17575807-17575826 Msa0942550:intron 30.0%
TACTTATACCAACATACTTG+GGG + chr6_3:17575971-17575990 None:intergenic 30.0%
GATACTTATACCAACATACT+TGG + chr6_3:17575973-17575992 None:intergenic 30.0%
GTGATTGAAGAAGAGTCAAT+TGG + chr6_3:17569161-17569180 None:intergenic 35.0%
CTCTAGCTATCACTTTGATT+TGG - chr6_3:17569273-17569292 Msa0942550:three_prime_UTR 35.0%
!! GGATTGTGTTGTTTGAGATT+TGG - chr6_3:17569613-17569632 Msa0942550:three_prime_UTR 35.0%
TATGTAATTCCTAGCTTGAC+CGG - chr6_3:17569811-17569830 Msa0942550:intron 35.0%
CAACCTAAAAATATCGGCAT+TGG + chr6_3:17569837-17569856 None:intergenic 35.0%
!!! CAATGCCGATATTTTTAGGT+TGG - chr6_3:17569835-17569854 Msa0942550:intron 35.0%
GGTGTCCAACCTAAAAATAT+CGG + chr6_3:17569843-17569862 None:intergenic 35.0%
CGAACTGAAACCAAAAAACA+AGG - chr6_3:17570267-17570286 Msa0942550:intron 35.0%
GAAATACGCTATGTTTGTTC+TGG - chr6_3:17570686-17570705 Msa0942550:intron 35.0%
AGATCAAGAAATAACGCACA+AGG + chr6_3:17570820-17570839 None:intergenic 35.0%
TTCTTACCAGAGAATGAGAT+TGG + chr6_3:17570965-17570984 None:intergenic 35.0%
! GATTTAAAATTGAGACCCCT+AGG - chr6_3:17571052-17571071 Msa0942550:CDS 35.0%
ATCTATGACTGTTAGATGAG+GGG + chr6_3:17571330-17571349 None:intergenic 35.0%
TGATCAAGCTTAATTCCGTT+AGG - chr6_3:17571552-17571571 Msa0942550:intron 35.0%
AAAACTGTGCAAGCTACAAA+TGG + chr6_3:17571891-17571910 None:intergenic 35.0%
!!! CTAATTTTTTTCAGTCAGGG+AGG + chr6_3:17572217-17572236 None:intergenic 35.0%
CTCCCTGACTGAAAAAAATT+AGG - chr6_3:17572215-17572234 Msa0942550:CDS 35.0%
! CTAGAGTAACATGATTTGGA+GGG + chr6_3:17572411-17572430 None:intergenic 35.0%
! TCTAGAGTAACATGATTTGG+AGG + chr6_3:17572412-17572431 None:intergenic 35.0%
!!! TGTGTTTGCGAATTGGTTTT+TGG + chr6_3:17572440-17572459 None:intergenic 35.0%
AACTCAGTTGTAGTACTAAG+AGG + chr6_3:17572688-17572707 None:intergenic 35.0%
TAGTACTACAACTGAGTTCT+TGG - chr6_3:17572690-17572709 Msa0942550:intron 35.0%
TCCATTGTCTCAAAGAAAGA+CGG - chr6_3:17572927-17572946 Msa0942550:intron 35.0%
AATTAAAGCAAGGGCTCTTA+AGG + chr6_3:17572976-17572995 None:intergenic 35.0%
TTAAGAGCCCTTGCTTTAAT+TGG - chr6_3:17572975-17572994 Msa0942550:intron 35.0%
CACTTATGATCACAAATGCA+AGG + chr6_3:17573209-17573228 None:intergenic 35.0%
CTTGCATTTGTGATCATAAG+TGG - chr6_3:17573207-17573226 Msa0942550:intron 35.0%
GTCTTCCTATTATGCTTTCA+TGG - chr6_3:17573320-17573339 Msa0942550:intron 35.0%
CTAGCAAATATCGCAATACA+TGG + chr6_3:17573426-17573445 None:intergenic 35.0%
TCCTATCACAGGATCTATAA+CGG + chr6_3:17573475-17573494 None:intergenic 35.0%
CCAGAAGAAAGCCTTAAAAT+AGG + chr6_3:17573503-17573522 None:intergenic 35.0%
!!! CCTATTTTAAGGCTTTCTTC+TGG - chr6_3:17573500-17573519 Msa0942550:intron 35.0%
AGTTAGCACATCAGTTGTAT+AGG - chr6_3:17573606-17573625 Msa0942550:intron 35.0%
ACATCAGTTGTATAGGTTCA+TGG - chr6_3:17573613-17573632 Msa0942550:intron 35.0%
!! TTAGCTGATTTTGTATGGAC+AGG - chr6_3:17573981-17574000 Msa0942550:intron 35.0%
! GTGTATAAACTTGATGACCA+CGG + chr6_3:17574012-17574031 None:intergenic 35.0%
ACGGTATGATATCAAAGACA+TGG + chr6_3:17574056-17574075 None:intergenic 35.0%
!! ATATCATACCGTGATTTGGT+TGG - chr6_3:17574064-17574083 Msa0942550:intron 35.0%
GTAATAAGACTTAGATCAGG+AGG + chr6_3:17574257-17574276 None:intergenic 35.0%
AATATACCGAAATACCAGCA+GGG + chr6_3:17574423-17574442 None:intergenic 35.0%
ATTCTTCAGAAGTTGTCATG+TGG - chr6_3:17574493-17574512 Msa0942550:intron 35.0%
TACAAATTGGTGTGTGGAAA+GGG + chr6_3:17574628-17574647 None:intergenic 35.0%
TTACAAATTGGTGTGTGGAA+AGG + chr6_3:17574629-17574648 None:intergenic 35.0%
! CATTACAATCCTTATTTCCC+TGG - chr6_3:17575021-17575040 Msa0942550:intron 35.0%
ATCATTAAGCATCTTAGGCA+TGG + chr6_3:17575058-17575077 None:intergenic 35.0%
ATGCCTAAGATGCTTAATGA+TGG - chr6_3:17575057-17575076 Msa0942550:intron 35.0%
!! TCATAAAAGTACCTGAGCTT+CGG + chr6_3:17575115-17575134 None:intergenic 35.0%
ACTTGCAGATGGGATTTAAA+TGG - chr6_3:17575377-17575396 Msa0942550:intron 35.0%
TTCTGTAACTCCAACGAATT+TGG + chr6_3:17575576-17575595 None:intergenic 35.0%
ATATAAGTGTATGTAGGTCC+TGG + chr6_3:17575704-17575723 None:intergenic 35.0%
GAGTGTCAGAATGTTCTTAT+TGG - chr6_3:17575800-17575819 Msa0942550:intron 35.0%
AGAAGAGTCAATTGGGACTT+GGG + chr6_3:17569153-17569172 None:intergenic 40.0%
AAGAAGAGTCAATTGGGACT+TGG + chr6_3:17569154-17569173 None:intergenic 40.0%
AGAGAAAGAGGCTTACGAAA+TGG + chr6_3:17569253-17569272 None:intergenic 40.0%
TGATAGCTAGAGAGAGAAAG+AGG + chr6_3:17569265-17569284 None:intergenic 40.0%
!! CTAAAAATATCGGCATTGGC+CGG + chr6_3:17569833-17569852 None:intergenic 40.0%
!! GGGTCTCTTATAGCTAGTTT+TGG - chr6_3:17570056-17570075 Msa0942550:intron 40.0%
! TTAATGTGTTGGGGTACCAT+TGG - chr6_3:17570414-17570433 Msa0942550:intron 40.0%
GAAACTCCAATCTCATTCTC+TGG - chr6_3:17570956-17570975 Msa0942550:CDS 40.0%
GGATTAATGTCACGATTCTC+TGG - chr6_3:17571243-17571262 Msa0942550:intron 40.0%
TCAAGCTTAATTCCGTTAGG+TGG - chr6_3:17571555-17571574 Msa0942550:intron 40.0%
GCTAGTCATTTGATGCCATT+AGG - chr6_3:17571583-17571602 Msa0942550:intron 40.0%
!!! CTGTCCACCACTTTTTTCTT+TGG - chr6_3:17571668-17571687 Msa0942550:intron 40.0%
CATGCCAAAGAAAAAAGTGG+TGG + chr6_3:17571675-17571694 None:intergenic 40.0%
CCACATGCCAAAGAAAAAAG+TGG + chr6_3:17571678-17571697 None:intergenic 40.0%
!!! CCACTTTTTTCTTTGGCATG+TGG - chr6_3:17571675-17571694 Msa0942550:intron 40.0%
CTCTCAAATGGTCGTTATCA+AGG - chr6_3:17571716-17571735 Msa0942550:intron 40.0%
! TTACCGTAGTCCAGTAGTTT+TGG - chr6_3:17571851-17571870 Msa0942550:intron 40.0%
AAGCCAAAACTACTGGACTA+CGG + chr6_3:17571857-17571876 None:intergenic 40.0%
AGCTCATAAGCCAAAACTAC+TGG + chr6_3:17571864-17571883 None:intergenic 40.0%
! GGTAATTGGGAGTTGGATTT+TGG - chr6_3:17572236-17572255 Msa0942550:CDS 40.0%
! AATTGGGAGTTGGATTTTGG+AGG - chr6_3:17572239-17572258 Msa0942550:CDS 40.0%
! ATTGGGAGTTGGATTTTGGA+GGG - chr6_3:17572240-17572259 Msa0942550:CDS 40.0%
! CTAAAGGTGTGTTTGCGAAT+TGG + chr6_3:17572447-17572466 None:intergenic 40.0%
! TGAGTTCTTGGCTCCAATTT+TGG - chr6_3:17572702-17572721 Msa0942550:intron 40.0%
TGGCATGCAGTAACCAAAAT+TGG + chr6_3:17572718-17572737 None:intergenic 40.0%
GAGACAATGGATGATACAGA+AGG + chr6_3:17572918-17572937 None:intergenic 40.0%
!! ACCGTCTTTCTTTGAGACAA+TGG + chr6_3:17572931-17572950 None:intergenic 40.0%
ACCAGCTCCAATTAAAGCAA+GGG + chr6_3:17572985-17573004 None:intergenic 40.0%
TGGTTGTCAAAGTCAACCAT+AGG - chr6_3:17573227-17573246 Msa0942550:intron 40.0%
TAGGAAGACTAGATTCTCCA+AGG + chr6_3:17573309-17573328 None:intergenic 40.0%
TGAGGTGACATGATCTAACA+TGG - chr6_3:17573346-17573365 Msa0942550:intron 40.0%
AATAGGATGAGTCCTATCAC+AGG + chr6_3:17573486-17573505 None:intergenic 40.0%
! TTCTTGTTTGCTCTACACCT+CGG - chr6_3:17573547-17573566 Msa0942550:intron 40.0%
AGTTGTATAGGTTCATGGTG+TGG - chr6_3:17573618-17573637 Msa0942550:intron 40.0%
AGTGGGAAATGAATTGTGCA+AGG - chr6_3:17573668-17573687 Msa0942550:intron 40.0%
ATTGTTGAGTGGAGAGAGAA+AGG - chr6_3:17573701-17573720 Msa0942550:intron 40.0%
!! GAGAGAGAAAGGTATCAAGA+GGG - chr6_3:17573712-17573731 Msa0942550:intron 40.0%
CATAGAGCTAAGCTCCTTAA+AGG + chr6_3:17573773-17573792 None:intergenic 40.0%
!! CTTTAAGGAGCTTAGCTCTA+TGG - chr6_3:17573771-17573790 Msa0942550:intron 40.0%
TATCAAAGACATGGAATGGC+AGG + chr6_3:17574047-17574066 None:intergenic 40.0%
AAGCAACACCAACCAAATCA+CGG + chr6_3:17574075-17574094 None:intergenic 40.0%
GCTTACAGAAGAAGAGGTAA+AGG - chr6_3:17574091-17574110 Msa0942550:intron 40.0%
AGAAGAAGAGGTAAAGGCTA+TGG - chr6_3:17574097-17574116 Msa0942550:intron 40.0%
AACATCTCACCCTCATCATT+GGG + chr6_3:17574149-17574168 None:intergenic 40.0%
AAACATCTCACCCTCATCAT+TGG + chr6_3:17574150-17574169 None:intergenic 40.0%
AAAGCGATCACTGAGTTTAC+CGG + chr6_3:17574180-17574199 None:intergenic 40.0%
GATTCATTTGCATATGGCTG+AGG + chr6_3:17574203-17574222 None:intergenic 40.0%
! GCAGCTGATTCATTTGCATA+TGG + chr6_3:17574209-17574228 None:intergenic 40.0%
ATGCAAATGAATCAGCTGCT+AGG - chr6_3:17574210-17574229 Msa0942550:CDS 40.0%
AAGACTTAGATCAGGAGGAT+AGG + chr6_3:17574252-17574271 None:intergenic 40.0%
TATGTGTTTGCTCTCCTAAC+TGG - chr6_3:17574385-17574404 Msa0942550:intron 40.0%
ATATACCGAAATACCAGCAG+GGG + chr6_3:17574422-17574441 None:intergenic 40.0%
GAATATACCGAAATACCAGC+AGG + chr6_3:17574424-17574443 None:intergenic 40.0%
AAATTGCTTGACCACCTGAT+GGG - chr6_3:17574516-17574535 Msa0942550:intron 40.0%
ATACTTTCATGTGGATGGCT+TGG - chr6_3:17574735-17574754 Msa0942550:intron 40.0%
AGTATTGTCACACGGATACA+AGG + chr6_3:17574942-17574961 None:intergenic 40.0%
TCAAGAGCAGTATTGTCACA+CGG + chr6_3:17574950-17574969 None:intergenic 40.0%
! TACAATCCTTATTTCCCTGG+TGG - chr6_3:17575024-17575043 Msa0942550:intron 40.0%
! GGTACTTTTATGAGCTGATG+AGG - chr6_3:17575122-17575141 Msa0942550:intron 40.0%
ACATTGCTACTACTTGCAGA+TGG - chr6_3:17575366-17575385 Msa0942550:intron 40.0%
CATTGCTACTACTTGCAGAT+GGG - chr6_3:17575367-17575386 Msa0942550:intron 40.0%
TGTTCTTAAGTCTCGCAAGT+TGG - chr6_3:17575459-17575478 Msa0942550:intron 40.0%
GAATTTGGCATGACGAGAAT+TGG + chr6_3:17575561-17575580 None:intergenic 40.0%
! TGTATTTTGTTACCTCCTCC+AGG - chr6_3:17575683-17575702 Msa0942550:intron 40.0%
AATGAAGACCCCAAGTATGT+TGG - chr6_3:17575960-17575979 Msa0942550:five_prime_UTR 40.0%
AGAGAGAGAGAGAGAGAAGT+TGG + chr6_3:17569183-17569202 None:intergenic 45.0%
! TACGAAATGGAAGCGCGATT+GGG + chr6_3:17569240-17569259 None:intergenic 45.0%
! TTACGAAATGGAAGCGCGAT+TGG + chr6_3:17569241-17569260 None:intergenic 45.0%
! CGGCCAATGCCGATATTTTT+AGG - chr6_3:17569831-17569850 Msa0942550:intron 45.0%
CACAGTTGTGTGTGAGTTTC+AGG - chr6_3:17569889-17569908 Msa0942550:CDS 45.0%
AGTTGTGTGTGAGTTTCAGG+TGG - chr6_3:17569892-17569911 Msa0942550:CDS 45.0%
CTTTGCAATTGCCTTGCTTG+AGG - chr6_3:17570328-17570347 Msa0942550:intron 45.0%
GCTAGAAGTTCTTGAACGAG+AGG - chr6_3:17570352-17570371 Msa0942550:intron 45.0%
ATCCACAGTCTGAACAGAGA+TGG - chr6_3:17570902-17570921 Msa0942550:CDS 45.0%
ATCCCTCAAAGTCTAGCCTA+GGG + chr6_3:17571071-17571090 None:intergenic 45.0%
! TAGGCTAGACTTTGAGGGAT+GGG - chr6_3:17571071-17571090 Msa0942550:intron 45.0%
!! GACTAGCTTAGTCCACCTAA+CGG + chr6_3:17571570-17571589 None:intergenic 45.0%
!! TAAGGTATTGCTACGGCATC+AGG + chr6_3:17571773-17571792 None:intergenic 45.0%
!! TTGGGAGTTGGATTTTGGAG+GGG - chr6_3:17572241-17572260 Msa0942550:CDS 45.0%
!! GATTTTGGAGGGGAATGCTT+TGG - chr6_3:17572251-17572270 Msa0942550:CDS 45.0%
ACATGATCAGGATCTTCCGA+GGG + chr6_3:17572859-17572878 None:intergenic 45.0%
GTCTCAAAGAAAGACGGTTC+TGG - chr6_3:17572933-17572952 Msa0942550:intron 45.0%
CACCAGCTCCAATTAAAGCA+AGG + chr6_3:17572986-17573005 None:intergenic 45.0%
TTAATTGGAGCTGGTGTCTC+AGG - chr6_3:17572990-17573009 Msa0942550:intron 45.0%
GCCGTTATAGATCCTGTGAT+AGG - chr6_3:17573471-17573490 Msa0942550:intron 45.0%
TTAAGGCTTTCTTCTGGGTC+AGG - chr6_3:17573506-17573525 Msa0942550:intron 45.0%
TGTATAGGTTCATGGTGTGG+AGG - chr6_3:17573621-17573640 Msa0942550:intron 45.0%
GTATAGGTTCATGGTGTGGA+GGG - chr6_3:17573622-17573641 Msa0942550:intron 45.0%
!! GGAGAGAGAAAGGTATCAAG+AGG - chr6_3:17573711-17573730 Msa0942550:intron 45.0%
AGGGATCATGCAGTCTGTTA+GGG - chr6_3:17573731-17573750 Msa0942550:intron 45.0%
!! GGTGTTGCTTACAGAAGAAG+AGG - chr6_3:17574085-17574104 Msa0942550:intron 45.0%
ACATCTCACCCTCATCATTG+GGG + chr6_3:17574148-17574167 None:intergenic 45.0%
AAGCGATCACTGAGTTTACC+GGG + chr6_3:17574179-17574198 None:intergenic 45.0%
!! TCAGCTGCTAGGTTTGCTAA+TGG - chr6_3:17574221-17574240 Msa0942550:CDS 45.0%
! CGTTTGCCCTTTGTGTTTTC+AGG - chr6_3:17574342-17574361 Msa0942550:intron 45.0%
GACGAGCCTGAAAACACAAA+GGG + chr6_3:17574351-17574370 None:intergenic 45.0%
TGACGAGCCTGAAAACACAA+AGG + chr6_3:17574352-17574371 None:intergenic 45.0%
!! TGTTTTCAGGCTCGTCACAA+TGG - chr6_3:17574355-17574374 Msa0942550:intron 45.0%
TATACCGAAATACCAGCAGG+GGG + chr6_3:17574421-17574440 None:intergenic 45.0%
GAAATTGCTTGACCACCTGA+TGG - chr6_3:17574515-17574534 Msa0942550:intron 45.0%
AAGCATCTTAGGCATGGCAA+TGG + chr6_3:17575052-17575071 None:intergenic 45.0%
GCGCCATCATTAAGCATCTT+AGG + chr6_3:17575063-17575082 None:intergenic 45.0%
GGCGCTGTTGAATATGAAGA+TGG - chr6_3:17575078-17575097 Msa0942550:intron 45.0%
! AGTTTTCGCTCTTCCATCTC+AGG + chr6_3:17575281-17575300 None:intergenic 45.0%
TGAGATGGAAGAGCGAAAAC+TGG - chr6_3:17575280-17575299 Msa0942550:intron 45.0%
TCTCGTCATGCCAAATTCGT+TGG - chr6_3:17575563-17575582 Msa0942550:intron 45.0%
TAAGTGTATGTAGGTCCTGG+AGG + chr6_3:17575701-17575720 None:intergenic 45.0%
!!! TTTTTTTTTTTTTTTGTATT+GGG - chr6_3:17569592-17569611 Msa0942550:three_prime_UTR 5.0%
!!! TAAAGTATTTTTTTTTTTTT+TGG - chr6_3:17569651-17569670 Msa0942550:three_prime_UTR 5.0%
!!! TTTTTTTTTTTTTTTGATTT+AGG - chr6_3:17569749-17569768 Msa0942550:CDS 5.0%
!!! AAATTTTTAATACTATAAAT+AGG - chr6_3:17572496-17572515 Msa0942550:intron 5.0%
!! TTGGGACTTGGGAGGTGTTT+GGG + chr6_3:17569142-17569161 None:intergenic 50.0%
!! ATTGGGACTTGGGAGGTGTT+TGG + chr6_3:17569143-17569162 None:intergenic 50.0%
AGAGTCAATTGGGACTTGGG+AGG + chr6_3:17569150-17569169 None:intergenic 50.0%
GGAAGAGAGAGGATCGAATC+CGG + chr6_3:17569219-17569238 None:intergenic 50.0%
!! TTAGGTTGGACACCTTCACC+TGG - chr6_3:17569849-17569868 Msa0942550:intron 50.0%
! TAGGTTGGACACCTTCACCT+GGG - chr6_3:17569850-17569869 Msa0942550:intron 50.0%
CACACACAACTGTGAGATCC+CGG + chr6_3:17569883-17569902 None:intergenic 50.0%
AACTTCTAGCGCCTCAAGCA+AGG + chr6_3:17570342-17570361 None:intergenic 50.0%
AGCCATCTCTGTTCAGACTG+TGG + chr6_3:17570907-17570926 None:intergenic 50.0%
ACAGTCTGAACAGAGATGGC+TGG - chr6_3:17570906-17570925 Msa0942550:CDS 50.0%
ACCCCTAGGCTAGACTTTGA+GGG - chr6_3:17571066-17571085 Msa0942550:intron 50.0%
TCCCTCAAAGTCTAGCCTAG+GGG + chr6_3:17571070-17571089 None:intergenic 50.0%
CATCCCTCAAAGTCTAGCCT+AGG + chr6_3:17571072-17571091 None:intergenic 50.0%
! CTAGGCTAGACTTTGAGGGA+TGG - chr6_3:17571070-17571089 Msa0942550:intron 50.0%
! AGGCTAGACTTTGAGGGATG+GGG - chr6_3:17571072-17571091 Msa0942550:intron 50.0%
ACTGTTAGATGAGGGGAACC+TGG + chr6_3:17571323-17571342 None:intergenic 50.0%
ATCAGGTGATGTGGATCGCA+TGG + chr6_3:17571756-17571775 None:intergenic 50.0%
CAGGGAGGATTGACGAAGAT+TGG + chr6_3:17572202-17572221 None:intergenic 50.0%
! TTGGAGGGGAATGCTTTGGA+AGG - chr6_3:17572255-17572274 Msa0942550:intron 50.0%
GACATGATCAGGATCTTCCG+AGG + chr6_3:17572860-17572879 None:intergenic 50.0%
!! AAAGACGGTTCTGGCTCTAC+TGG - chr6_3:17572942-17572961 Msa0942550:intron 50.0%
GCCCTTGCTTTAATTGGAGC+TGG - chr6_3:17572981-17573000 Msa0942550:intron 50.0%
! AGCTGGTGTCTCAGGTCTTT+TGG - chr6_3:17572998-17573017 Msa0942550:intron 50.0%
! GCTGGTGTCTCAGGTCTTTT+GGG - chr6_3:17572999-17573018 Msa0942550:intron 50.0%
TCAGCTGATGAAGCTGAGCA+TGG - chr6_3:17573038-17573057 Msa0942550:intron 50.0%
ATGGATAGTGTGGAGATGCG+AGG + chr6_3:17573064-17573083 None:intergenic 50.0%
TCGCATCTCCACACTATCCA+TGG - chr6_3:17573063-17573082 Msa0942550:intron 50.0%
GTTTGCTCTACACCTCGGAT+AGG - chr6_3:17573552-17573571 Msa0942550:intron 50.0%
GGATAGGAGCCTGAATGAGA+AGG - chr6_3:17573568-17573587 Msa0942550:intron 50.0%
TAGGAGCCTGAATGAGAAGG+TGG - chr6_3:17573571-17573590 Msa0942550:intron 50.0%
AGGAGCCTGAATGAGAAGGT+GGG - chr6_3:17573572-17573591 Msa0942550:intron 50.0%
TTGAGCCCACCTTCTCATTC+AGG + chr6_3:17573580-17573599 None:intergenic 50.0%
GAGGGATCATGCAGTCTGTT+AGG - chr6_3:17573730-17573749 Msa0942550:intron 50.0%
GGGATCATGCAGTCTGTTAG+GGG - chr6_3:17573732-17573751 Msa0942550:intron 50.0%
TATGGCAGCTGAGATTGAGG+TGG - chr6_3:17574115-17574134 Msa0942550:intron 50.0%
GCTGAGATTGAGGTGGAAGA+TGG - chr6_3:17574122-17574141 Msa0942550:intron 50.0%
GAAGATGGCCCCAATGATGA+GGG - chr6_3:17574137-17574156 Msa0942550:intron 50.0%
AGCGATCACTGAGTTTACCG+GGG + chr6_3:17574178-17574197 None:intergenic 50.0%
!! GCTGCTAGGTTTGCTAATGG+AGG - chr6_3:17574224-17574243 Msa0942550:CDS 50.0%
ATACCGAAATACCAGCAGGG+GGG + chr6_3:17574420-17574439 None:intergenic 50.0%
TTGGTTCCAAACCACCCATC+AGG + chr6_3:17574533-17574552 None:intergenic 50.0%
ATGGCTCCACCAGGGAAATA+AGG + chr6_3:17575033-17575052 None:intergenic 50.0%
CCGAAGACGACGATAGTATG+CGG + chr6_3:17575434-17575453 None:intergenic 50.0%
CCGCATACTATCGTCGTCTT+CGG - chr6_3:17575431-17575450 Msa0942550:intron 50.0%
CATACTATCGTCGTCTTCGG+TGG - chr6_3:17575434-17575453 Msa0942550:intron 50.0%
CTCTCTGCAGCTTCTCTCTC+CGG - chr6_3:17569197-17569216 Msa0942550:three_prime_UTR 55.0%
AAGCGCGATTGGGAAGAGAG+AGG + chr6_3:17569230-17569249 None:intergenic 55.0%
GTCTGAACAGAGATGGCTGG+AGG - chr6_3:17570909-17570928 Msa0942550:CDS 55.0%
GACCCCTAGGCTAGACTTTG+AGG - chr6_3:17571065-17571084 Msa0942550:intron 55.0%
! GGCTAGACTTTGAGGGATGG+GGG - chr6_3:17571073-17571092 Msa0942550:intron 55.0%
TGCTACGGCATCAGGTGATG+TGG + chr6_3:17571765-17571784 None:intergenic 55.0%
TCGTGAGGCCATGGATAGTG+TGG + chr6_3:17573074-17573093 None:intergenic 55.0%
ACACTATCCATGGCCTCACG+AGG - chr6_3:17573073-17573092 Msa0942550:intron 55.0%
CACTATCCATGGCCTCACGA+GGG - chr6_3:17573074-17573093 Msa0942550:intron 55.0%
GAACTGAGGATTCCCTCGTG+AGG + chr6_3:17573089-17573108 None:intergenic 55.0%
CTCATTCAGGCTCCTATCCG+AGG + chr6_3:17573567-17573586 None:intergenic 55.0%
TGTATGGACAGGATTCGCCG+TGG - chr6_3:17573992-17574011 Msa0942550:intron 55.0%
GGCTATGGCAGCTGAGATTG+AGG - chr6_3:17574112-17574131 Msa0942550:intron 55.0%
GGAAGATGGCCCCAATGATG+AGG - chr6_3:17574136-17574155 Msa0942550:intron 55.0%
GGTGAGATGTTTACACGCCC+CGG - chr6_3:17574158-17574177 Msa0942550:intron 55.0%
AAATACCAGCAGGGGGGTCA+CGG + chr6_3:17574414-17574433 None:intergenic 55.0%
TGACCCCCCTGCTGGTATTT+CGG - chr6_3:17574414-17574433 Msa0942550:intron 55.0%
TTGCTTGACCACCTGATGGG+TGG - chr6_3:17574519-17574538 Msa0942550:intron 55.0%
! TGACCACCTGATGGGTGGTT+TGG - chr6_3:17574524-17574543 Msa0942550:intron 55.0%
GTTCCAAACCACCCATCAGG+TGG + chr6_3:17574530-17574549 None:intergenic 55.0%
TACCTGAGCTTCGGTAGCAG+GGG + chr6_3:17575106-17575125 None:intergenic 55.0%
GTACCTGAGCTTCGGTAGCA+GGG + chr6_3:17575107-17575126 None:intergenic 55.0%
AGTACCTGAGCTTCGGTAGC+AGG + chr6_3:17575108-17575127 None:intergenic 55.0%
TTGGGCAGCAGAACCTGAGA+TGG - chr6_3:17575265-17575284 Msa0942550:intron 55.0%
GTGTATGTAGGTCCTGGAGG+AGG + chr6_3:17575698-17575717 None:intergenic 55.0%
CCTTCACCTGGGTTCGAGTC+CGG - chr6_3:17569861-17569880 Msa0942550:intron 60.0%
CTTCACCTGGGTTCGAGTCC+GGG - chr6_3:17569862-17569881 Msa0942550:intron 60.0%
AGGATTCCCTCGTGAGGCCA+TGG + chr6_3:17573083-17573102 None:intergenic 60.0%
GGGGGTCACGGTAACCAGTT+AGG + chr6_3:17574402-17574421 None:intergenic 60.0%
GCATGGCAATGGCTCCACCA+GGG + chr6_3:17575041-17575060 None:intergenic 60.0%
TACCCCTGCTACCGAAGCTC+AGG - chr6_3:17575101-17575120 Msa0942550:intron 60.0%
!! CGGCATTGGCCGGTCAAGCT+AGG + chr6_3:17569823-17569842 None:intergenic 65.0%
CCGGACTCGAACCCAGGTGA+AGG + chr6_3:17569864-17569883 None:intergenic 65.0%
GAGATCCCGGACTCGAACCC+AGG + chr6_3:17569870-17569889 None:intergenic 65.0%
GGCATGGCAATGGCTCCACC+AGG + chr6_3:17575042-17575061 None:intergenic 65.0%
GGTTACCGTGACCCCCCTGC+TGG - chr6_3:17574406-17574425 Msa0942550:intron 70.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 17569121 17576061 17569121 ID=Msa0942550;Name=Msa0942550
chr6_3 mRNA 17569121 17576061 17569121 ID=Msa0942550-mRNA-1;Parent=Msa0942550;Name=Msa0942550-mRNA-1;_AED=0.03;_eAED=0.03;_QI=147|0.87|0.77|1|0.87|0.77|9|560|301
chr6_3 exon 17569121 17569797 17569121 ID=Msa0942550-mRNA-1:exon:5272;Parent=Msa0942550-mRNA-1
chr6_3 exon 17569881 17569946 17569881 ID=Msa0942550-mRNA-1:exon:5271;Parent=Msa0942550-mRNA-1
chr6_3 exon 17570060 17570176 17570060 ID=Msa0942550-mRNA-1:exon:5270;Parent=Msa0942550-mRNA-1
chr6_3 exon 17570747 17570818 17570747 ID=Msa0942550-mRNA-1:exon:5269;Parent=Msa0942550-mRNA-1
chr6_3 exon 17570902 17571083 17570902 ID=Msa0942550-mRNA-1:exon:5268;Parent=Msa0942550-mRNA-1
chr6_3 exon 17571097 17571179 17571097 ID=Msa0942550-mRNA-1:exon:5267;Parent=Msa0942550-mRNA-1
chr6_3 exon 17572059 17572270 17572059 ID=Msa0942550-mRNA-1:exon:5266;Parent=Msa0942550-mRNA-1
chr6_3 exon 17574205 17574272 17574205 ID=Msa0942550-mRNA-1:exon:5265;Parent=Msa0942550-mRNA-1
chr6_3 exon 17575926 17576061 17575926 ID=Msa0942550-mRNA-1:exon:5264;Parent=Msa0942550-mRNA-1
chr6_3 five_prime_UTR 17575926 17576061 17575926 ID=Msa0942550-mRNA-1:five_prime_utr;Parent=Msa0942550-mRNA-1
chr6_3 five_prime_UTR 17574262 17574272 17574262 ID=Msa0942550-mRNA-1:five_prime_utr;Parent=Msa0942550-mRNA-1
chr6_3 CDS 17574205 17574261 17574205 ID=Msa0942550-mRNA-1:cds;Parent=Msa0942550-mRNA-1
chr6_3 CDS 17572059 17572270 17572059 ID=Msa0942550-mRNA-1:cds;Parent=Msa0942550-mRNA-1
chr6_3 CDS 17571097 17571179 17571097 ID=Msa0942550-mRNA-1:cds;Parent=Msa0942550-mRNA-1
chr6_3 CDS 17570902 17571083 17570902 ID=Msa0942550-mRNA-1:cds;Parent=Msa0942550-mRNA-1
chr6_3 CDS 17570747 17570818 17570747 ID=Msa0942550-mRNA-1:cds;Parent=Msa0942550-mRNA-1
chr6_3 CDS 17570060 17570176 17570060 ID=Msa0942550-mRNA-1:cds;Parent=Msa0942550-mRNA-1
chr6_3 CDS 17569881 17569946 17569881 ID=Msa0942550-mRNA-1:cds;Parent=Msa0942550-mRNA-1
chr6_3 CDS 17569681 17569797 17569681 ID=Msa0942550-mRNA-1:cds;Parent=Msa0942550-mRNA-1
chr6_3 three_prime_UTR 17569121 17569680 17569121 ID=Msa0942550-mRNA-1:three_prime_utr;Parent=Msa0942550-mRNA-1
Gene Sequence

>Msa0942550

ATGGCTGGAGGTGTTTTTCAACAATTATTGAGGAGGAAACTCCAATCTCATTCTCTGAGTCCTTCTGTATCATCCATTGTCTCAAAGAAAGACGGTTCTGGCTCTACTGGCAGCAGTTCCTTAAGAGCCCTTGCTTTAATTGGAGCTGGTGTCTCAGGTCTTTTGGGTTTTGCAACAACAGCATCAGCTGATGAAGCTGAGCATGGCCTCGCATCTCCACACTATCCATGGCCTCACGAGGGAATCCTCAGTTCATATGATCACGCTTCGATTCGCCGTGGTCATCAAGTTTATACACAAGTCTGTGCTTCCTGCCATTCCATGTCTTTGATATCATACCGTGATTTGGTTGAAGAAGAGGTAAAGGCTATGGCAGCTGAGATTGAGGTGGAAGATGGCCCCAATGATGAGGGTGAGATGTTTACACGCCCCGGTAAACTCAGTGATCGCTTTCCTCAGCCATATGCAAATGAATCAGCTGCTAGGTTTGCTAATGGAGGAGCCTATCCTCCTGATCTAAGTCTTATTACCAAAGCTCGTCACAATGGTCAGAACTATGTGTTTGCTCTCCTAACTGGTTACCGTGACCCCCCTGCTGGTATTTCGATCAGAGAAGGATTGCATTACAATCCTTATTTCCCTGGTGGAGCCATTGCCATGCCTAAGATGCTTAATGATGGCGCTGTTGAATATGAAGATGGTACCCCTGCTACCGAAGCTCAGATGGGGAAAGATGTTGTGTCATTTTTGTCTTGGGCAGCAGAACCTGAGATGGAAGAGCGAAAACTGATGGGATTTAAATGGATATTTGTACTTTCATTGGCATTACTTCAAGCCGCATACTATCGTCGTCTTCGGTGGTCTGTTCTTAAGTCTCGCAAGTTGGTTCTTGATGTTGTCAACTAG

Protein sequence

>Msa0942550

MAGGVFQQLLRRKLQSHSLSPSVSSIVSKKDGSGSTGSSSLRALALIGAGVSGLLGFATTASADEAEHGLASPHYPWPHEGILSSYDHASIRRGHQVYTQVCASCHSMSLISYRDLVEEEVKAMAAEIEVEDGPNDEGEMFTRPGKLSDRFPQPYANESAARFANGGAYPPDLSLITKARHNGQNYVFALLTGYRDPPAGISIREGLHYNPYFPGGAIAMPKMLNDGAVEYEDGTPATEAQMGKDVVSFLSWAAEPEMEERKLMGFKWIFVLSLALLQAAYYRRLRWSVLKSRKLVLDVVN*