Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1148580 | AES89267.1 | 99.425 | 174 | 1 | 0 | 1 | 174 | 1 | 174 | 2.69e-117 | 362 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1148580 | sp|F4IGL2|KN7E_ARATH | 80.460 | 174 | 34 | 0 | 1 | 174 | 1 | 174 | 1.24e-94 | 295 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1148580 | G7JJW4 | 99.425 | 174 | 1 | 0 | 1 | 174 | 1 | 174 | 1.28e-117 | 362 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0639120 | Msa1148580 | 0.804081 | 2.563211e-49 | -8.615850e-47 |
Msa0659990 | Msa1148580 | 0.821372 | 4.181346e-53 | -8.615850e-47 |
Msa0795660 | Msa1148580 | 0.800364 | 1.492313e-48 | -8.615850e-47 |
Msa0825270 | Msa1148580 | 0.805131 | 1.547767e-49 | -8.615850e-47 |
Msa0127040 | Msa1148580 | 0.801479 | 8.832290e-49 | -8.615850e-47 |
Msa0198520 | Msa1148580 | 0.823269 | 1.516708e-53 | -8.615850e-47 |
Msa0198530 | Msa1148580 | 0.826735 | 2.304437e-54 | -8.615850e-47 |
Msa0215360 | Msa1148580 | 0.801534 | 8.605885e-49 | -8.615850e-47 |
Msa0413450 | Msa1148580 | 0.808053 | 3.741421e-50 | -8.615850e-47 |
Msa0428170 | Msa1148580 | 0.811734 | 6.036043e-51 | -8.615850e-47 |
Msa0474700 | Msa1148580 | 0.813255 | 2.807948e-51 | -8.615850e-47 |
Msa0478580 | Msa1148580 | 0.808047 | 3.753039e-50 | -8.615850e-47 |
Msa0981430 | Msa1148580 | 0.812115 | 4.986999e-51 | -8.615850e-47 |
Msa1083880 | Msa1148580 | 0.803887 | 2.812589e-49 | -8.615850e-47 |
Msa1093330 | Msa1148580 | 0.803681 | 3.104730e-49 | -8.615850e-47 |
Msa0239450 | Msa1148580 | 0.807700 | 4.447483e-50 | -8.615850e-47 |
Msa0267870 | Msa1148580 | 0.816259 | 6.063190e-52 | -8.615850e-47 |
Msa0291520 | Msa1148580 | 0.810562 | 1.083774e-50 | -8.615850e-47 |
Msa0321190 | Msa1148580 | 0.802713 | 4.923541e-49 | -8.615850e-47 |
Msa0322590 | Msa1148580 | 0.836596 | 8.529249e-57 | -8.615850e-47 |
Msa1148580 | Msa1181170 | -0.807060 | 6.079160e-50 | -8.615850e-47 |
Msa1148580 | Msa1201830 | 0.810550 | 1.090071e-50 | -8.615850e-47 |
Msa1148580 | Msa1227690 | 0.815860 | 7.445646e-52 | -8.615850e-47 |
Msa1148580 | Msa1254710 | 0.804435 | 2.162894e-49 | -8.615850e-47 |
Msa1148580 | Msa1294840 | 0.819745 | 9.881926e-53 | -8.615850e-47 |
Msa1148580 | Msa1299360 | 0.808159 | 3.551319e-50 | -8.615850e-47 |
Msa1148580 | Msa1344850 | 0.821583 | 3.737613e-53 | -8.615850e-47 |
Msa1148580 | Msa1463470 | 0.807561 | 4.759326e-50 | -8.615850e-47 |
Msa0505150 | Msa1148580 | 0.800623 | 1.321493e-48 | -8.615850e-47 |
Msa0513440 | Msa1148580 | 0.804413 | 2.185943e-49 | -8.615850e-47 |
Msa0869010 | Msa1148580 | 0.809100 | 2.236316e-50 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1148580 | MtrunA17_Chr4g0036001 | 99.425 | 174 | 1 | 0 | 1 | 174 | 1 | 174 | 3.24e-121 | 362 |
Msa1148580 | MtrunA17_Chr8g0372171 | 67.614 | 176 | 50 | 2 | 1 | 174 | 1 | 171 | 7.50e-77 | 247 |
Msa1148580 | MtrunA17_Chr5g0405181 | 65.909 | 176 | 54 | 2 | 1 | 174 | 1 | 172 | 2.16e-73 | 237 |
Msa1148580 | MtrunA17_Chr3g0142261 | 60.510 | 157 | 61 | 1 | 19 | 174 | 14 | 170 | 2.74e-58 | 196 |
Msa1148580 | MtrunA17_Chr4g0070001 | 53.289 | 152 | 69 | 1 | 22 | 173 | 141 | 290 | 7.71e-49 | 169 |
Msa1148580 | MtrunA17_Chr6g0483701 | 51.948 | 154 | 73 | 1 | 22 | 174 | 28 | 181 | 3.45e-46 | 161 |
Msa1148580 | MtrunA17_Chr7g0258991 | 40.252 | 159 | 81 | 4 | 22 | 173 | 71 | 222 | 2.62e-26 | 104 |
Msa1148580 | MtrunA17_Chr3g0145071 | 36.723 | 177 | 98 | 4 | 3 | 173 | 80 | 248 | 4.67e-26 | 103 |
Msa1148580 | MtrunA17_Chr4g0035661 | 36.306 | 157 | 88 | 3 | 23 | 173 | 88 | 238 | 3.31e-25 | 101 |
Msa1148580 | MtrunA17_Chr1g0152231 | 38.462 | 156 | 86 | 4 | 23 | 172 | 2 | 153 | 1.54e-23 | 96.7 |
Msa1148580 | MtrunA17_Chr1g0193221 | 35.032 | 157 | 85 | 4 | 23 | 173 | 2 | 147 | 4.36e-23 | 95.1 |
Msa1148580 | MtrunA17_Chr8g0369881 | 34.104 | 173 | 98 | 5 | 2 | 165 | 853 | 1018 | 4.08e-21 | 89.7 |
Msa1148580 | MtrunA17_Chr5g0447041 | 35.119 | 168 | 90 | 5 | 16 | 169 | 426 | 588 | 1.46e-19 | 85.1 |
Msa1148580 | MtrunA17_Chr4g0062291 | 32.370 | 173 | 103 | 4 | 14 | 173 | 113 | 284 | 2.03e-19 | 84.7 |
Msa1148580 | MtrunA17_Chr1g0178411 | 31.395 | 172 | 94 | 3 | 11 | 164 | 5 | 170 | 8.59e-19 | 82.8 |
Msa1148580 | MtrunA17_Chr2g0327581 | 29.825 | 171 | 100 | 3 | 10 | 166 | 40 | 204 | 7.15e-18 | 80.1 |
Msa1148580 | MtrunA17_Chr2g0307481 | 32.727 | 165 | 95 | 5 | 22 | 173 | 66 | 227 | 8.50e-18 | 80.1 |
Msa1148580 | MtrunA17_Chr1g0182151 | 30.675 | 163 | 96 | 4 | 22 | 169 | 52 | 212 | 2.22e-17 | 79.0 |
Msa1148580 | MtrunA17_Chr5g0407791 | 32.184 | 174 | 105 | 6 | 7 | 173 | 872 | 1039 | 2.57e-17 | 78.6 |
Msa1148580 | MtrunA17_Chr5g0411971 | 34.483 | 174 | 99 | 7 | 7 | 170 | 381 | 549 | 3.37e-17 | 78.2 |
Msa1148580 | MtrunA17_Chr5g0421521 | 33.908 | 174 | 100 | 7 | 7 | 170 | 356 | 524 | 7.05e-17 | 77.4 |
Msa1148580 | MtrunA17_Chr7g0266631 | 29.747 | 158 | 92 | 2 | 25 | 164 | 10 | 166 | 1.27e-16 | 76.6 |
Msa1148580 | MtrunA17_Chr5g0421591 | 33.333 | 174 | 101 | 7 | 7 | 170 | 356 | 524 | 1.69e-16 | 76.3 |
Msa1148580 | MtrunA17_Chr2g0312631 | 34.104 | 173 | 99 | 7 | 4 | 167 | 365 | 531 | 1.88e-16 | 76.3 |
Msa1148580 | MtrunA17_Chr1g0195111 | 34.104 | 173 | 95 | 6 | 16 | 173 | 388 | 556 | 1.94e-16 | 76.3 |
Msa1148580 | MtrunA17_Chr5g0398521 | 33.951 | 162 | 91 | 4 | 24 | 174 | 57 | 213 | 2.76e-16 | 75.5 |
Msa1148580 | MtrunA17_Chr7g0269691 | 35.758 | 165 | 91 | 5 | 16 | 169 | 392 | 552 | 3.30e-16 | 75.5 |
Msa1148580 | MtrunA17_Chr2g0319271 | 32.418 | 182 | 92 | 6 | 4 | 165 | 380 | 550 | 3.35e-16 | 75.5 |
Msa1148580 | MtrunA17_Chr3g0102921 | 31.515 | 165 | 100 | 4 | 16 | 169 | 430 | 592 | 3.60e-16 | 75.5 |
Msa1148580 | MtrunA17_Chr8g0390981 | 33.143 | 175 | 98 | 6 | 9 | 169 | 499 | 668 | 5.74e-16 | 74.7 |
Msa1148580 | MtrunA17_Chr8g0386901 | 32.121 | 165 | 99 | 4 | 16 | 169 | 475 | 637 | 8.54e-16 | 74.3 |
Msa1148580 | MtrunA17_Chr2g0322291 | 27.778 | 198 | 111 | 5 | 3 | 173 | 60 | 252 | 1.55e-15 | 73.6 |
Msa1148580 | MtrunA17_Chr6g0484511 | 33.548 | 155 | 85 | 5 | 25 | 166 | 290 | 439 | 3.69e-15 | 72.4 |
Msa1148580 | MtrunA17_Chr1g0192481 | 32.121 | 165 | 97 | 4 | 16 | 169 | 50 | 210 | 9.05e-15 | 71.2 |
Msa1148580 | MtrunA17_Chr7g0257301 | 35.659 | 129 | 64 | 5 | 49 | 166 | 421 | 541 | 1.41e-14 | 70.9 |
Msa1148580 | MtrunA17_Chr2g0280421 | 32.222 | 180 | 104 | 6 | 1 | 167 | 415 | 589 | 2.05e-14 | 70.1 |
Msa1148580 | MtrunA17_Chr4g0042061 | 30.460 | 174 | 108 | 4 | 4 | 166 | 413 | 584 | 2.35e-14 | 70.1 |
Msa1148580 | MtrunA17_Chr7g0245931 | 30.818 | 159 | 100 | 3 | 24 | 174 | 52 | 208 | 7.76e-14 | 68.6 |
Msa1148580 | MtrunA17_Chr6g0485471 | 33.333 | 165 | 101 | 4 | 13 | 173 | 108 | 267 | 3.15e-13 | 66.6 |
Msa1148580 | MtrunA17_Chr4g0049011 | 29.310 | 174 | 108 | 5 | 4 | 166 | 260 | 429 | 3.99e-13 | 66.6 |
Msa1148580 | MtrunA17_Chr7g0272871 | 33.544 | 158 | 95 | 5 | 16 | 166 | 119 | 273 | 5.68e-13 | 65.9 |
Msa1148580 | MtrunA17_Chr4g0045381 | 30.508 | 177 | 82 | 4 | 25 | 173 | 194 | 357 | 7.98e-13 | 65.9 |
Msa1148580 | MtrunA17_Chr1g0191851 | 35.616 | 146 | 80 | 6 | 25 | 161 | 148 | 288 | 8.50e-13 | 65.5 |
Msa1148580 | MtrunA17_Chr2g0331761 | 31.169 | 154 | 101 | 3 | 24 | 173 | 185 | 337 | 1.54e-12 | 64.7 |
Msa1148580 | MtrunA17_Chr7g0271961 | 29.375 | 160 | 101 | 3 | 16 | 164 | 393 | 551 | 2.94e-12 | 63.9 |
Msa1148580 | MtrunA17_Chr3g0122121 | 31.609 | 174 | 82 | 7 | 25 | 173 | 99 | 260 | 5.60e-12 | 63.2 |
Msa1148580 | MtrunA17_Chr8g0377731 | 30.233 | 172 | 86 | 5 | 25 | 173 | 56 | 216 | 7.20e-12 | 62.8 |
Msa1148580 | MtrunA17_Chr4g0069141 | 32.000 | 175 | 88 | 8 | 22 | 173 | 151 | 317 | 1.58e-11 | 62.0 |
Msa1148580 | MtrunA17_Chr2g0295881 | 32.484 | 157 | 97 | 5 | 24 | 173 | 197 | 351 | 3.47e-11 | 60.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1148580 | AT2G21300.2 | 80.460 | 174 | 34 | 0 | 1 | 174 | 1 | 174 | 1.26e-95 | 295 |
Msa1148580 | AT2G21300.4 | 80.460 | 174 | 34 | 0 | 1 | 174 | 1 | 174 | 1.26e-95 | 295 |
Msa1148580 | AT2G21300.3 | 80.460 | 174 | 34 | 0 | 1 | 174 | 1 | 174 | 1.26e-95 | 295 |
Msa1148580 | AT2G21300.1 | 80.460 | 174 | 34 | 0 | 1 | 174 | 1 | 174 | 1.26e-95 | 295 |
Msa1148580 | AT2G21300.5 | 80.460 | 174 | 34 | 0 | 1 | 174 | 1 | 174 | 1.26e-95 | 295 |
Msa1148580 | AT4G38950.3 | 82.353 | 153 | 27 | 0 | 22 | 174 | 11 | 163 | 6.63e-87 | 271 |
Msa1148580 | AT4G38950.5 | 82.353 | 153 | 27 | 0 | 22 | 174 | 11 | 163 | 6.63e-87 | 271 |
Msa1148580 | AT4G38950.4 | 82.353 | 153 | 27 | 0 | 22 | 174 | 11 | 163 | 6.63e-87 | 271 |
Msa1148580 | AT4G38950.1 | 82.353 | 153 | 27 | 0 | 22 | 174 | 11 | 163 | 6.63e-87 | 271 |
Msa1148580 | AT4G38950.2 | 82.353 | 153 | 27 | 0 | 22 | 174 | 11 | 163 | 6.63e-87 | 271 |
Msa1148580 | AT3G51150.1 | 64.024 | 164 | 57 | 1 | 13 | 174 | 6 | 169 | 2.82e-70 | 229 |
Msa1148580 | AT3G51150.2 | 64.024 | 164 | 57 | 1 | 13 | 174 | 6 | 169 | 3.00e-70 | 229 |
Msa1148580 | AT3G51150.4 | 64.024 | 164 | 57 | 1 | 13 | 174 | 6 | 169 | 3.00e-70 | 229 |
Msa1148580 | AT3G51150.3 | 64.024 | 164 | 57 | 1 | 13 | 174 | 6 | 169 | 3.00e-70 | 229 |
Msa1148580 | AT5G66310.2 | 64.634 | 164 | 56 | 1 | 13 | 174 | 7 | 170 | 1.34e-68 | 225 |
Msa1148580 | AT5G66310.3 | 64.634 | 164 | 56 | 1 | 13 | 174 | 7 | 170 | 1.34e-68 | 225 |
Msa1148580 | AT5G66310.1 | 64.634 | 164 | 56 | 1 | 13 | 174 | 7 | 170 | 1.34e-68 | 225 |
Msa1148580 | AT5G42490.2 | 67.742 | 155 | 50 | 0 | 20 | 174 | 5 | 159 | 1.87e-65 | 216 |
Msa1148580 | AT5G42490.1 | 67.742 | 155 | 50 | 0 | 20 | 174 | 5 | 159 | 1.97e-65 | 216 |
Msa1148580 | AT4G24170.1 | 65.409 | 159 | 46 | 4 | 20 | 174 | 2 | 155 | 4.38e-61 | 204 |
Msa1148580 | AT4G24170.2 | 65.409 | 159 | 46 | 4 | 20 | 174 | 2 | 155 | 4.38e-61 | 204 |
Msa1148580 | AT3G43210.3 | 50.877 | 171 | 77 | 2 | 9 | 174 | 9 | 177 | 2.59e-52 | 179 |
Msa1148580 | AT3G43210.5 | 50.877 | 171 | 77 | 2 | 9 | 174 | 9 | 177 | 2.59e-52 | 179 |
Msa1148580 | AT3G43210.2 | 50.877 | 171 | 77 | 2 | 9 | 174 | 9 | 177 | 2.59e-52 | 179 |
Msa1148580 | AT3G43210.4 | 50.877 | 171 | 77 | 2 | 9 | 174 | 9 | 177 | 2.59e-52 | 179 |
Msa1148580 | AT3G43210.1 | 50.877 | 171 | 77 | 2 | 9 | 174 | 9 | 177 | 2.59e-52 | 179 |
Msa1148580 | AT1G18370.1 | 51.948 | 154 | 73 | 1 | 22 | 174 | 29 | 182 | 3.03e-46 | 162 |
Msa1148580 | AT1G21730.1 | 40.000 | 160 | 82 | 4 | 21 | 173 | 72 | 224 | 6.18e-28 | 109 |
Msa1148580 | AT3G10180.2 | 36.943 | 157 | 83 | 3 | 23 | 173 | 2 | 148 | 2.32e-27 | 107 |
Msa1148580 | AT3G10180.1 | 36.943 | 157 | 83 | 3 | 23 | 173 | 2 | 148 | 2.35e-27 | 107 |
Msa1148580 | AT5G06670.8 | 37.736 | 159 | 87 | 2 | 21 | 173 | 63 | 215 | 1.96e-26 | 105 |
Msa1148580 | AT5G06670.4 | 37.736 | 159 | 87 | 2 | 21 | 173 | 63 | 215 | 1.96e-26 | 105 |
Msa1148580 | AT5G06670.7 | 37.736 | 159 | 87 | 2 | 21 | 173 | 63 | 215 | 1.96e-26 | 105 |
Msa1148580 | AT5G06670.5 | 37.736 | 159 | 87 | 2 | 21 | 173 | 63 | 215 | 2.28e-26 | 105 |
Msa1148580 | AT5G06670.2 | 37.736 | 159 | 87 | 2 | 21 | 173 | 63 | 215 | 4.64e-26 | 104 |
Msa1148580 | AT5G06670.3 | 37.736 | 159 | 87 | 2 | 21 | 173 | 63 | 215 | 4.64e-26 | 104 |
Msa1148580 | AT3G12020.3 | 38.365 | 159 | 86 | 2 | 21 | 173 | 66 | 218 | 6.07e-26 | 103 |
Msa1148580 | AT3G12020.2 | 38.365 | 159 | 86 | 2 | 21 | 173 | 66 | 218 | 6.07e-26 | 103 |
Msa1148580 | AT3G12020.4 | 38.365 | 159 | 86 | 2 | 21 | 173 | 66 | 218 | 6.88e-26 | 103 |
Msa1148580 | AT3G12020.1 | 38.365 | 159 | 86 | 2 | 21 | 173 | 66 | 218 | 6.88e-26 | 103 |
Msa1148580 | AT4G39050.1 | 36.196 | 163 | 90 | 3 | 18 | 173 | 92 | 247 | 1.77e-25 | 102 |
Msa1148580 | AT2G21380.2 | 36.538 | 156 | 85 | 4 | 25 | 173 | 105 | 253 | 2.94e-24 | 99.0 |
Msa1148580 | AT2G21380.1 | 36.538 | 156 | 85 | 4 | 25 | 173 | 105 | 253 | 2.94e-24 | 99.0 |
Msa1148580 | AT5G06670.6 | 35.714 | 168 | 87 | 3 | 21 | 173 | 63 | 224 | 1.74e-23 | 96.7 |
Msa1148580 | AT5G06670.1 | 35.714 | 168 | 87 | 3 | 21 | 173 | 63 | 224 | 1.74e-23 | 96.7 |
Msa1148580 | AT1G59540.1 | 35.897 | 156 | 88 | 4 | 23 | 172 | 2 | 151 | 1.38e-19 | 85.5 |
Msa1148580 | AT1G18550.1 | 32.022 | 178 | 107 | 4 | 9 | 173 | 136 | 312 | 2.58e-18 | 82.0 |
Msa1148580 | AT2G28620.1 | 31.915 | 188 | 100 | 3 | 9 | 173 | 40 | 222 | 2.91e-18 | 81.6 |
Msa1148580 | AT2G28620.3 | 31.915 | 188 | 100 | 3 | 9 | 173 | 40 | 222 | 3.11e-18 | 81.6 |
Msa1148580 | AT2G28620.2 | 31.915 | 188 | 100 | 3 | 9 | 173 | 40 | 222 | 3.11e-18 | 81.6 |
Msa1148580 | AT2G36200.2 | 30.114 | 176 | 95 | 5 | 10 | 165 | 3 | 170 | 1.63e-17 | 79.7 |
Msa1148580 | AT1G09170.3 | 32.530 | 166 | 98 | 4 | 16 | 170 | 426 | 588 | 5.18e-17 | 78.2 |
Msa1148580 | AT1G09170.7 | 32.530 | 166 | 98 | 4 | 16 | 170 | 426 | 588 | 5.18e-17 | 78.2 |
Msa1148580 | AT1G09170.6 | 32.530 | 166 | 98 | 4 | 16 | 170 | 426 | 588 | 5.67e-17 | 78.2 |
Msa1148580 | AT1G09170.8 | 32.530 | 166 | 98 | 4 | 16 | 170 | 426 | 588 | 5.67e-17 | 78.2 |
Msa1148580 | AT1G09170.4 | 32.530 | 166 | 98 | 4 | 16 | 170 | 426 | 588 | 5.74e-17 | 78.2 |
Msa1148580 | AT1G09170.5 | 32.530 | 166 | 98 | 4 | 16 | 170 | 426 | 588 | 5.90e-17 | 78.2 |
Msa1148580 | AT1G09170.2 | 32.530 | 166 | 98 | 4 | 16 | 170 | 426 | 588 | 6.31e-17 | 77.8 |
Msa1148580 | AT5G65930.1 | 33.548 | 155 | 87 | 5 | 16 | 161 | 879 | 1026 | 1.05e-16 | 77.4 |
Msa1148580 | AT5G65930.2 | 33.548 | 155 | 87 | 5 | 16 | 161 | 880 | 1027 | 1.06e-16 | 77.4 |
Msa1148580 | AT5G65930.3 | 33.548 | 155 | 87 | 5 | 16 | 161 | 886 | 1033 | 1.11e-16 | 77.4 |
Msa1148580 | AT5G27000.1 | 34.337 | 166 | 96 | 4 | 16 | 170 | 386 | 549 | 1.25e-16 | 77.0 |
Msa1148580 | AT2G47500.1 | 34.940 | 166 | 93 | 5 | 16 | 170 | 391 | 552 | 3.09e-16 | 75.9 |
Msa1148580 | AT2G47500.2 | 34.940 | 166 | 93 | 5 | 16 | 170 | 391 | 552 | 3.22e-16 | 75.9 |
Msa1148580 | AT3G44730.1 | 33.133 | 166 | 98 | 5 | 16 | 170 | 369 | 532 | 3.38e-16 | 75.9 |
Msa1148580 | AT3G44730.4 | 33.133 | 166 | 98 | 5 | 16 | 170 | 369 | 532 | 3.38e-16 | 75.9 |
Msa1148580 | AT3G44730.2 | 33.133 | 166 | 98 | 5 | 16 | 170 | 414 | 577 | 3.59e-16 | 75.9 |
Msa1148580 | AT3G44730.3 | 33.133 | 166 | 98 | 5 | 16 | 170 | 414 | 577 | 3.59e-16 | 75.9 |
Msa1148580 | AT3G45850.2 | 30.769 | 156 | 93 | 2 | 25 | 166 | 56 | 210 | 4.80e-16 | 75.5 |
Msa1148580 | AT3G45850.1 | 30.769 | 156 | 93 | 2 | 25 | 166 | 56 | 210 | 4.80e-16 | 75.5 |
Msa1148580 | AT2G22610.3 | 31.928 | 166 | 99 | 5 | 7 | 163 | 401 | 561 | 5.61e-16 | 75.1 |
Msa1148580 | AT2G22610.1 | 31.928 | 166 | 99 | 5 | 7 | 163 | 400 | 560 | 5.72e-16 | 75.1 |
Msa1148580 | AT2G22610.2 | 31.928 | 166 | 99 | 5 | 7 | 163 | 400 | 560 | 6.22e-16 | 75.1 |
Msa1148580 | AT4G27180.1 | 33.520 | 179 | 102 | 6 | 4 | 169 | 368 | 542 | 7.74e-16 | 74.7 |
Msa1148580 | AT4G27180.2 | 33.520 | 179 | 102 | 6 | 4 | 169 | 368 | 542 | 7.74e-16 | 74.7 |
Msa1148580 | AT3G17360.1 | 33.898 | 177 | 76 | 7 | 25 | 173 | 169 | 332 | 7.97e-16 | 74.7 |
Msa1148580 | AT3G17360.3 | 33.898 | 177 | 76 | 7 | 25 | 173 | 169 | 332 | 8.20e-16 | 74.7 |
Msa1148580 | AT1G72250.4 | 34.524 | 168 | 93 | 7 | 4 | 161 | 492 | 652 | 8.26e-16 | 74.7 |
Msa1148580 | AT1G12430.2 | 32.704 | 159 | 97 | 3 | 24 | 174 | 70 | 226 | 8.31e-16 | 74.7 |
Msa1148580 | AT1G72250.3 | 34.524 | 168 | 93 | 7 | 4 | 161 | 493 | 653 | 8.34e-16 | 74.7 |
Msa1148580 | AT1G12430.1 | 32.704 | 159 | 97 | 3 | 24 | 174 | 70 | 226 | 8.47e-16 | 74.7 |
Msa1148580 | AT2G36200.1 | 29.885 | 174 | 98 | 3 | 10 | 165 | 3 | 170 | 8.49e-16 | 74.7 |
Msa1148580 | AT3G17360.2 | 33.898 | 177 | 76 | 7 | 25 | 173 | 169 | 332 | 8.69e-16 | 74.7 |
Msa1148580 | AT1G72250.1 | 34.524 | 168 | 93 | 7 | 4 | 161 | 472 | 632 | 9.17e-16 | 74.7 |
Msa1148580 | AT1G72250.2 | 34.524 | 168 | 93 | 7 | 4 | 161 | 481 | 641 | 9.26e-16 | 74.7 |
Msa1148580 | AT5G41310.1 | 31.875 | 160 | 96 | 4 | 16 | 164 | 414 | 571 | 1.80e-15 | 73.6 |
Msa1148580 | AT5G54670.1 | 32.203 | 177 | 107 | 4 | 4 | 169 | 377 | 551 | 2.13e-15 | 73.6 |
Msa1148580 | AT5G54670.2 | 32.203 | 177 | 107 | 4 | 4 | 169 | 377 | 551 | 2.13e-15 | 73.6 |
Msa1148580 | AT3G49650.1 | 34.356 | 163 | 92 | 6 | 25 | 174 | 15 | 175 | 2.37e-15 | 73.2 |
Msa1148580 | AT5G54670.3 | 32.203 | 177 | 107 | 4 | 4 | 169 | 317 | 491 | 2.44e-15 | 73.2 |
Msa1148580 | AT1G01950.2 | 31.765 | 170 | 97 | 5 | 16 | 174 | 55 | 216 | 4.88e-15 | 72.4 |
Msa1148580 | AT1G01950.1 | 31.765 | 170 | 97 | 5 | 16 | 174 | 55 | 216 | 4.89e-15 | 72.4 |
Msa1148580 | AT1G01950.3 | 31.765 | 170 | 97 | 5 | 16 | 174 | 55 | 216 | 4.91e-15 | 72.4 |
Msa1148580 | AT5G27550.2 | 34.911 | 169 | 96 | 7 | 7 | 166 | 114 | 277 | 9.00e-15 | 71.6 |
Msa1148580 | AT5G27550.1 | 34.911 | 169 | 96 | 7 | 7 | 166 | 114 | 277 | 9.00e-15 | 71.6 |
Msa1148580 | AT3G19050.1 | 31.638 | 177 | 80 | 4 | 25 | 173 | 194 | 357 | 2.84e-14 | 70.5 |
Msa1148580 | AT2G37420.1 | 29.268 | 164 | 85 | 5 | 25 | 166 | 49 | 203 | 5.08e-14 | 69.7 |
Msa1148580 | AT2G37420.2 | 29.268 | 164 | 85 | 5 | 25 | 166 | 49 | 203 | 5.08e-14 | 69.7 |
Msa1148580 | AT3G16060.1 | 32.727 | 165 | 102 | 4 | 13 | 173 | 162 | 321 | 5.10e-14 | 69.3 |
Msa1148580 | AT1G55550.1 | 34.899 | 149 | 79 | 6 | 25 | 166 | 92 | 229 | 9.41e-14 | 68.6 |
Msa1148580 | AT3G63480.1 | 31.515 | 165 | 92 | 5 | 25 | 173 | 4 | 163 | 1.01e-13 | 68.6 |
Msa1148580 | AT3G63480.2 | 31.515 | 165 | 92 | 5 | 25 | 173 | 4 | 163 | 1.07e-13 | 68.6 |
Msa1148580 | AT1G73860.1 | 32.680 | 153 | 90 | 4 | 25 | 166 | 510 | 660 | 1.08e-13 | 68.6 |
Msa1148580 | AT1G73860.2 | 32.680 | 153 | 90 | 4 | 25 | 166 | 427 | 577 | 1.69e-13 | 68.2 |
Msa1148580 | AT4G05190.1 | 31.977 | 172 | 101 | 5 | 8 | 166 | 412 | 580 | 2.38e-13 | 67.4 |
Msa1148580 | AT4G05190.2 | 31.977 | 172 | 101 | 5 | 8 | 166 | 399 | 567 | 2.71e-13 | 67.4 |
Msa1148580 | AT1G63640.5 | 30.539 | 167 | 101 | 5 | 16 | 170 | 454 | 617 | 3.56e-13 | 67.0 |
Msa1148580 | AT3G10310.1 | 36.937 | 111 | 58 | 3 | 71 | 170 | 407 | 516 | 3.65e-13 | 67.0 |
Msa1148580 | AT3G10310.2 | 36.937 | 111 | 58 | 3 | 71 | 170 | 407 | 516 | 3.66e-13 | 67.0 |
Msa1148580 | AT4G21270.1 | 31.395 | 172 | 102 | 5 | 8 | 166 | 415 | 583 | 3.70e-13 | 67.0 |
Msa1148580 | AT1G63640.1 | 30.539 | 167 | 101 | 5 | 16 | 170 | 464 | 627 | 4.32e-13 | 67.0 |
Msa1148580 | AT1G63640.4 | 30.539 | 167 | 101 | 5 | 16 | 170 | 464 | 627 | 4.32e-13 | 67.0 |
Msa1148580 | AT1G63640.3 | 30.539 | 167 | 101 | 5 | 16 | 170 | 464 | 627 | 4.40e-13 | 67.0 |
Msa1148580 | AT1G18410.4 | 34.146 | 123 | 69 | 3 | 59 | 170 | 666 | 787 | 4.97e-13 | 66.6 |
Msa1148580 | AT1G18410.3 | 34.146 | 123 | 69 | 3 | 59 | 170 | 523 | 644 | 5.19e-13 | 66.6 |
Msa1148580 | AT1G18410.2 | 34.146 | 123 | 69 | 3 | 59 | 170 | 523 | 644 | 5.19e-13 | 66.6 |
Msa1148580 | AT4G14150.1 | 29.714 | 175 | 81 | 5 | 25 | 173 | 92 | 250 | 9.46e-13 | 65.9 |
Msa1148580 | AT1G63640.2 | 30.818 | 159 | 95 | 5 | 16 | 162 | 464 | 619 | 1.43e-12 | 65.5 |
Msa1148580 | AT1G18410.1 | 34.783 | 115 | 63 | 3 | 59 | 162 | 666 | 779 | 7.24e-12 | 63.2 |
Msa1148580 | AT1G18410.5 | 34.783 | 115 | 63 | 3 | 59 | 162 | 513 | 626 | 8.14e-12 | 63.2 |
Msa1148580 | AT3G44050.1 | 30.286 | 175 | 91 | 5 | 22 | 173 | 91 | 257 | 1.31e-11 | 62.8 |
Msa1148580 | AT3G54870.3 | 31.746 | 126 | 73 | 2 | 58 | 173 | 137 | 259 | 2.99e-11 | 61.6 |
Msa1148580 | AT3G54870.1 | 31.746 | 126 | 73 | 2 | 58 | 173 | 137 | 259 | 2.99e-11 | 61.6 |
Msa1148580 | AT3G54870.2 | 31.746 | 126 | 73 | 2 | 58 | 173 | 137 | 259 | 3.44e-11 | 61.2 |
Msa1148580 | AT3G23670.1 | 27.429 | 175 | 85 | 4 | 25 | 173 | 97 | 255 | 5.88e-11 | 60.8 |
Msa1148580 | AT3G23670.2 | 30.400 | 125 | 65 | 2 | 71 | 173 | 131 | 255 | 6.58e-11 | 60.5 |
Find 36 sgRNAs with CRISPR-Local
Find 178 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTATTAACTACCGCAATTAA+TGG | 0.253574 | 7_4:-28868576 | Msa1148580:five_prime_UTR |
GGTGGCAGACAGAGTATTTC+GGG | 0.253890 | 7_4:-28867580 | Msa1148580:intron |
TATTAACTACCGCAATTAAT+GGG | 0.355348 | 7_4:-28868575 | Msa1148580:five_prime_UTR |
TGGTGGCAGACAGAGTATTT+CGG | 0.358079 | 7_4:-28867581 | Msa1148580:intron |
TTTCCAAGTGCCTACACATT+TGG | 0.368868 | 7_4:-28868135 | Msa1148580:intron |
TGCTAATGAATCTGCAGATT+GGG | 0.381276 | 7_4:-28868214 | Msa1148580:CDS |
AACCTTCACGCAATGTATTC+CGG | 0.415906 | 7_4:+28868163 | None:intergenic |
CTGCTAATGAATCTGCAGAT+TGG | 0.419350 | 7_4:-28868215 | Msa1148580:CDS |
AGAAGATTCTTGTGTTACTT+AGG | 0.420887 | 7_4:-28868266 | Msa1148580:CDS |
TAGGTTGCGTGATGATCCTT+AGG | 0.452683 | 7_4:-28867075 | None:intergenic |
CTGGAGAAGAGTTGTCGAAA+TGG | 0.453784 | 7_4:-28868320 | Msa1148580:CDS |
GAAATTTCCTTCTCGTTCAA+AGG | 0.470575 | 7_4:+28868237 | None:intergenic |
TTCTTGTGTTACTTAGGCTT+AGG | 0.470717 | 7_4:-28868260 | Msa1148580:CDS |
TGGGATTAGCTTGTTAATTG+AGG | 0.472715 | 7_4:-28868385 | Msa1148580:five_prime_UTR |
AGGTATATGAGGAAGGAGCT+AGG | 0.481647 | 7_4:-28867539 | Msa1148580:CDS |
TTACCAAATGTGTAGGCACT+TGG | 0.492018 | 7_4:+28868132 | None:intergenic |
TGGAGAAGAGTTGTCGAAAT+GGG | 0.504063 | 7_4:-28868319 | Msa1148580:CDS |
TGAAACGAAGCAGGTATATG+AGG | 0.513008 | 7_4:-28867550 | Msa1148580:CDS |
TCGAAATGGGAGAAGATGAA+TGG | 0.517570 | 7_4:-28868306 | Msa1148580:CDS |
GAGAAGATGAATGGAGTTAG+TGG | 0.531131 | 7_4:-28868297 | Msa1148580:CDS |
GGTATATGAGGAAGGAGCTA+GGG | 0.535524 | 7_4:-28867538 | Msa1148580:CDS |
CAGTGGAAAGACATATACTA+TGG | 0.536613 | 7_4:-28867369 | Msa1148580:CDS |
GATTAGCTTGTTAATTGAGG+TGG | 0.551277 | 7_4:-28868382 | Msa1148580:five_prime_UTR |
GCTTAGGCCTTTGAACGAGA+AGG | 0.553255 | 7_4:-28868244 | Msa1148580:CDS |
GGATCATCACGCAACCTAAG+TGG | 0.556914 | 7_4:+28867080 | None:intergenic |
GGGTGACTGTGAAACGAAGC+AGG | 0.565088 | 7_4:-28867559 | Msa1148580:CDS |
ATGGATTTACCAAACGAAGA+AGG | 0.570460 | 7_4:+28868543 | None:intergenic |
GCATATGGGCAAACAAGCAG+TGG | 0.571286 | 7_4:-28867386 | Msa1148580:CDS |
GCACTGACAACACTCCACTT+AGG | 0.581250 | 7_4:-28867094 | Msa1148580:CDS |
GGAAAGACATATACTATGGT+CGG | 0.584005 | 7_4:-28867365 | Msa1148580:CDS |
ATTTAACTTACCAAATGTGT+AGG | 0.586180 | 7_4:+28868125 | None:intergenic |
TACCGGAATACATTGCGTGA+AGG | 0.600495 | 7_4:-28868165 | Msa1148580:CDS |
ACGAAGCAGGTATATGAGGA+AGG | 0.610187 | 7_4:-28867546 | Msa1148580:CDS |
GAAATCGCTCTTTCAGTAGT+CGG | 0.626438 | 7_4:-28867516 | Msa1148580:CDS |
ATCGCTCTTTCAGTAGTCGG+TGG | 0.629355 | 7_4:-28867513 | Msa1148580:CDS |
GTGGCAGACAGAGTATTTCG+GGG | 0.692851 | 7_4:-28867579 | Msa1148580:intron |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | GTAATTAAACTATTAATAAT+TGG | - | chr7_4:28868372-28868391 | Msa1148580:five_prime_UTR | 10.0% |
!! | GTAATTAAACTATTAATAAT+TGG | - | chr7_4:28868372-28868391 | Msa1148580:five_prime_UTR | 10.0% |
!! | TCATAAATTAATCATAATGA+TGG | + | chr7_4:28867147-28867166 | None:intergenic | 15.0% |
!! | CTAAATCAATTTACATAAAT+TGG | - | chr7_4:28867866-28867885 | Msa1148580:intron | 15.0% |
!! | TCATAAATTAATCATAATGA+TGG | + | chr7_4:28867147-28867166 | None:intergenic | 15.0% |
!! | CTAAATCAATTTACATAAAT+TGG | - | chr7_4:28867866-28867885 | Msa1148580:intron | 15.0% |
!! | TCAATTTACATAAATTGGTA+AGG | - | chr7_4:28867871-28867890 | Msa1148580:intron | 20.0% |
!! | TTGATATAAATATCCAAGTT+TGG | + | chr7_4:28867930-28867949 | None:intergenic | 20.0% |
!! | TCAATTTACATAAATTGGTA+AGG | - | chr7_4:28867871-28867890 | Msa1148580:intron | 20.0% |
!! | TTGATATAAATATCCAAGTT+TGG | + | chr7_4:28867930-28867949 | None:intergenic | 20.0% |
! | TTATTAACTACCGCAATTAA+TGG | - | chr7_4:28867092-28867111 | Msa1148580:CDS | 25.0% |
! | TATTAACTACCGCAATTAAT+GGG | - | chr7_4:28867093-28867112 | Msa1148580:CDS | 25.0% |
! | TAACAAAAACCCATTAATTG+CGG | + | chr7_4:28867105-28867124 | None:intergenic | 25.0% |
!!! | TTTTTCTCTTTTAGGAAACA+TGG | - | chr7_4:28867247-28867266 | Msa1148580:intron | 25.0% |
!!! | TTTTCTCTTTTAGGAAACAT+GGG | - | chr7_4:28867248-28867267 | Msa1148580:intron | 25.0% |
!! | ATTTAACTTACCAAATGTGT+AGG | + | chr7_4:28867546-28867565 | None:intergenic | 25.0% |
!!! | GGTTTTGATAATTCTAAGTT+CGG | + | chr7_4:28867688-28867707 | None:intergenic | 25.0% |
! | AAGTTAAGATCATGTCAATT+GGG | + | chr7_4:28867791-28867810 | None:intergenic | 25.0% |
! | AAAGTTAAGATCATGTCAAT+TGG | + | chr7_4:28867792-28867811 | None:intergenic | 25.0% |
! | TTAATGTTGATATGAACACT+TGG | - | chr7_4:28867821-28867840 | Msa1148580:intron | 25.0% |
! | ATTATGACACATTAGATTGA+TGG | - | chr7_4:28868022-28868041 | Msa1148580:intron | 25.0% |
!!! | TTCTGAATATTTGTTGTGAT+TGG | - | chr7_4:28868067-28868086 | Msa1148580:intron | 25.0% |
! | GTGAGTATAAATTAGTATGT+TGG | - | chr7_4:28868186-28868205 | Msa1148580:CDS | 25.0% |
! | TATGTTAATCAAGAAGTAGA+AGG | + | chr7_4:28868230-28868249 | None:intergenic | 25.0% |
! | TTCTACTTCTTGATTAACAT+AGG | - | chr7_4:28868229-28868248 | Msa1148580:CDS | 25.0% |
!!! | ATATTTTTGACTACGCAAAA+AGG | - | chr7_4:28868349-28868368 | Msa1148580:exon | 25.0% |
!!! | TATTTTTGACTACGCAAAAA+GGG | - | chr7_4:28868350-28868369 | Msa1148580:exon | 25.0% |
! | TTATTAACTACCGCAATTAA+TGG | - | chr7_4:28867092-28867111 | Msa1148580:CDS | 25.0% |
! | TATTAACTACCGCAATTAAT+GGG | - | chr7_4:28867093-28867112 | Msa1148580:CDS | 25.0% |
! | TAACAAAAACCCATTAATTG+CGG | + | chr7_4:28867105-28867124 | None:intergenic | 25.0% |
!!! | TTTTTCTCTTTTAGGAAACA+TGG | - | chr7_4:28867247-28867266 | Msa1148580:intron | 25.0% |
!!! | TTTTCTCTTTTAGGAAACAT+GGG | - | chr7_4:28867248-28867267 | Msa1148580:intron | 25.0% |
!! | ATTTAACTTACCAAATGTGT+AGG | + | chr7_4:28867546-28867565 | None:intergenic | 25.0% |
!!! | GGTTTTGATAATTCTAAGTT+CGG | + | chr7_4:28867688-28867707 | None:intergenic | 25.0% |
! | AAGTTAAGATCATGTCAATT+GGG | + | chr7_4:28867791-28867810 | None:intergenic | 25.0% |
! | AAAGTTAAGATCATGTCAAT+TGG | + | chr7_4:28867792-28867811 | None:intergenic | 25.0% |
! | TTAATGTTGATATGAACACT+TGG | - | chr7_4:28867821-28867840 | Msa1148580:intron | 25.0% |
! | ATTATGACACATTAGATTGA+TGG | - | chr7_4:28868022-28868041 | Msa1148580:intron | 25.0% |
!!! | TTCTGAATATTTGTTGTGAT+TGG | - | chr7_4:28868067-28868086 | Msa1148580:intron | 25.0% |
! | GTGAGTATAAATTAGTATGT+TGG | - | chr7_4:28868186-28868205 | Msa1148580:CDS | 25.0% |
! | TATGTTAATCAAGAAGTAGA+AGG | + | chr7_4:28868230-28868249 | None:intergenic | 25.0% |
! | TTCTACTTCTTGATTAACAT+AGG | - | chr7_4:28868229-28868248 | Msa1148580:CDS | 25.0% |
!!! | ATATTTTTGACTACGCAAAA+AGG | - | chr7_4:28868349-28868368 | Msa1148580:exon | 25.0% |
!!! | TATTTTTGACTACGCAAAAA+GGG | - | chr7_4:28868350-28868369 | Msa1148580:exon | 25.0% |
! | TTTTTGTTACCTTCTTCGTT+TGG | - | chr7_4:28867116-28867135 | Msa1148580:CDS | 30.0% |
TAAAAGAGAAAAAGCGAAAC+GGG | + | chr7_4:28867240-28867259 | None:intergenic | 30.0% | |
CTAAAAGAGAAAAAGCGAAA+CGG | + | chr7_4:28867241-28867260 | None:intergenic | 30.0% | |
!!! | AACATGGGTTGTTTTTGAAA+TGG | - | chr7_4:28867263-28867282 | Msa1148580:intron | 30.0% |
!!! | ACATGGGTTGTTTTTGAAAT+GGG | - | chr7_4:28867264-28867283 | Msa1148580:intron | 30.0% |
TTAATTGAGGTGGAAAAAGA+GGG | - | chr7_4:28867296-28867315 | Msa1148580:intron | 30.0% | |
!! | AGAAGATTCTTGTGTTACTT+AGG | - | chr7_4:28867402-28867421 | Msa1148580:intron | 30.0% |
! | ATGATACTACGATTTTGTAC+CGG | - | chr7_4:28867486-28867505 | Msa1148580:intron | 30.0% |
! | TTGATAATTCTAAGTTCGGT+CGG | + | chr7_4:28867684-28867703 | None:intergenic | 30.0% |
! | AAAAGAGTACATCAAAGCTA+GGG | + | chr7_4:28867768-28867787 | None:intergenic | 30.0% |
!! | GTCAATTTTTATTTGCCTGT+TGG | - | chr7_4:28867843-28867862 | Msa1148580:intron | 30.0% |
! | TGTAAATTGATTTAGCCAAC+AGG | + | chr7_4:28867861-28867880 | None:intergenic | 30.0% |
!! | TTGTTTTTCTTCTCCAAACT+TGG | - | chr7_4:28867914-28867933 | Msa1148580:intron | 30.0% |
TATTCAGAAAAACTCTGTTC+AGG | + | chr7_4:28868056-28868075 | None:intergenic | 30.0% | |
!! | TGAATATTTGTTGTGATTGG+TGG | - | chr7_4:28868070-28868089 | Msa1148580:intron | 30.0% |
! | AACATAGTGCTATTAACACA+AGG | - | chr7_4:28868458-28868477 | Msa1148580:intron | 30.0% |
! | TTTTTGTTACCTTCTTCGTT+TGG | - | chr7_4:28867116-28867135 | Msa1148580:CDS | 30.0% |
TAAAAGAGAAAAAGCGAAAC+GGG | + | chr7_4:28867240-28867259 | None:intergenic | 30.0% | |
CTAAAAGAGAAAAAGCGAAA+CGG | + | chr7_4:28867241-28867260 | None:intergenic | 30.0% | |
!!! | AACATGGGTTGTTTTTGAAA+TGG | - | chr7_4:28867263-28867282 | Msa1148580:intron | 30.0% |
!!! | ACATGGGTTGTTTTTGAAAT+GGG | - | chr7_4:28867264-28867283 | Msa1148580:intron | 30.0% |
TTAATTGAGGTGGAAAAAGA+GGG | - | chr7_4:28867296-28867315 | Msa1148580:intron | 30.0% | |
!! | AGAAGATTCTTGTGTTACTT+AGG | - | chr7_4:28867402-28867421 | Msa1148580:intron | 30.0% |
! | ATGATACTACGATTTTGTAC+CGG | - | chr7_4:28867486-28867505 | Msa1148580:intron | 30.0% |
! | TTGATAATTCTAAGTTCGGT+CGG | + | chr7_4:28867684-28867703 | None:intergenic | 30.0% |
! | AAAAGAGTACATCAAAGCTA+GGG | + | chr7_4:28867768-28867787 | None:intergenic | 30.0% |
!! | GTCAATTTTTATTTGCCTGT+TGG | - | chr7_4:28867843-28867862 | Msa1148580:intron | 30.0% |
! | TGTAAATTGATTTAGCCAAC+AGG | + | chr7_4:28867861-28867880 | None:intergenic | 30.0% |
!! | TTGTTTTTCTTCTCCAAACT+TGG | - | chr7_4:28867914-28867933 | Msa1148580:intron | 30.0% |
TATTCAGAAAAACTCTGTTC+AGG | + | chr7_4:28868056-28868075 | None:intergenic | 30.0% | |
!! | TGAATATTTGTTGTGATTGG+TGG | - | chr7_4:28868070-28868089 | Msa1148580:intron | 30.0% |
! | AACATAGTGCTATTAACACA+AGG | - | chr7_4:28868458-28868477 | Msa1148580:intron | 30.0% |
ATGGATTTACCAAACGAAGA+AGG | + | chr7_4:28867128-28867147 | None:intergenic | 35.0% | |
!!! | CGTTTCGCTTTTTCTCTTTT+AGG | - | chr7_4:28867239-28867258 | Msa1148580:intron | 35.0% |
!! | TGGGATTAGCTTGTTAATTG+AGG | - | chr7_4:28867283-28867302 | Msa1148580:intron | 35.0% |
!! | GATTAGCTTGTTAATTGAGG+TGG | - | chr7_4:28867286-28867305 | Msa1148580:intron | 35.0% |
GTTAATTGAGGTGGAAAAAG+AGG | - | chr7_4:28867295-28867314 | Msa1148580:intron | 35.0% | |
GGTTTGGAAGTGAGAAAAAT+GGG | - | chr7_4:28867317-28867336 | Msa1148580:intron | 35.0% | |
!! | TTCTTGTGTTACTTAGGCTT+AGG | - | chr7_4:28867408-28867427 | Msa1148580:intron | 35.0% |
GAAATTTCCTTCTCGTTCAA+AGG | + | chr7_4:28867434-28867453 | None:intergenic | 35.0% | |
TGCTAATGAATCTGCAGATT+GGG | - | chr7_4:28867454-28867473 | Msa1148580:intron | 35.0% | |
TGATAATTCTAAGTTCGGTC+GGG | + | chr7_4:28867683-28867702 | None:intergenic | 35.0% | |
! | GAAAAGAGTACATCAAAGCT+AGG | + | chr7_4:28867769-28867788 | None:intergenic | 35.0% |
GTTAATCAAGAAGTAGAAGG+TGG | + | chr7_4:28868227-28868246 | None:intergenic | 35.0% | |
!! | TCAGCGAGTATTTTTGCATA+TGG | - | chr7_4:28868267-28868286 | Msa1148580:CDS | 35.0% |
!! | CAGCGAGTATTTTTGCATAT+GGG | - | chr7_4:28868268-28868287 | Msa1148580:CDS | 35.0% |
CAGTGGAAAGACATATACTA+TGG | - | chr7_4:28868299-28868318 | Msa1148580:CDS | 35.0% | |
GGAAAGACATATACTATGGT+CGG | - | chr7_4:28868303-28868322 | Msa1148580:CDS | 35.0% | |
ATGGATTTACCAAACGAAGA+AGG | + | chr7_4:28867128-28867147 | None:intergenic | 35.0% | |
!!! | CGTTTCGCTTTTTCTCTTTT+AGG | - | chr7_4:28867239-28867258 | Msa1148580:intron | 35.0% |
!! | TGGGATTAGCTTGTTAATTG+AGG | - | chr7_4:28867283-28867302 | Msa1148580:intron | 35.0% |
!! | GATTAGCTTGTTAATTGAGG+TGG | - | chr7_4:28867286-28867305 | Msa1148580:intron | 35.0% |
GTTAATTGAGGTGGAAAAAG+AGG | - | chr7_4:28867295-28867314 | Msa1148580:intron | 35.0% | |
GGTTTGGAAGTGAGAAAAAT+GGG | - | chr7_4:28867317-28867336 | Msa1148580:intron | 35.0% | |
!! | TTCTTGTGTTACTTAGGCTT+AGG | - | chr7_4:28867408-28867427 | Msa1148580:intron | 35.0% |
GAAATTTCCTTCTCGTTCAA+AGG | + | chr7_4:28867434-28867453 | None:intergenic | 35.0% | |
TGCTAATGAATCTGCAGATT+GGG | - | chr7_4:28867454-28867473 | Msa1148580:intron | 35.0% | |
TGATAATTCTAAGTTCGGTC+GGG | + | chr7_4:28867683-28867702 | None:intergenic | 35.0% | |
! | GAAAAGAGTACATCAAAGCT+AGG | + | chr7_4:28867769-28867788 | None:intergenic | 35.0% |
GTTAATCAAGAAGTAGAAGG+TGG | + | chr7_4:28868227-28868246 | None:intergenic | 35.0% | |
!! | TCAGCGAGTATTTTTGCATA+TGG | - | chr7_4:28868267-28868286 | Msa1148580:CDS | 35.0% |
!! | CAGCGAGTATTTTTGCATAT+GGG | - | chr7_4:28868268-28868287 | Msa1148580:CDS | 35.0% |
CAGTGGAAAGACATATACTA+TGG | - | chr7_4:28868299-28868318 | Msa1148580:CDS | 35.0% | |
GGAAAGACATATACTATGGT+CGG | - | chr7_4:28868303-28868322 | Msa1148580:CDS | 35.0% | |
GGGTTTGGAAGTGAGAAAAA+TGG | - | chr7_4:28867316-28867335 | Msa1148580:intron | 40.0% | |
AGAAAAATGGGAGCTATTGC+TGG | - | chr7_4:28867329-28867348 | Msa1148580:CDS | 40.0% | |
TGGAGAAGAGTTGTCGAAAT+GGG | - | chr7_4:28867349-28867368 | Msa1148580:CDS | 40.0% | |
TCGAAATGGGAGAAGATGAA+TGG | - | chr7_4:28867362-28867381 | Msa1148580:CDS | 40.0% | |
GAGAAGATGAATGGAGTTAG+TGG | - | chr7_4:28867371-28867390 | Msa1148580:CDS | 40.0% | |
CTGCTAATGAATCTGCAGAT+TGG | - | chr7_4:28867453-28867472 | Msa1148580:intron | 40.0% | |
AACCTTCACGCAATGTATTC+CGG | + | chr7_4:28867508-28867527 | None:intergenic | 40.0% | |
TTTCCAAGTGCCTACACATT+TGG | - | chr7_4:28867533-28867552 | Msa1148580:CDS | 40.0% | |
TTACCAAATGTGTAGGCACT+TGG | + | chr7_4:28867539-28867558 | None:intergenic | 40.0% | |
AGTCTTAATCCTCAGTTCCA+GGG | + | chr7_4:28867717-28867736 | None:intergenic | 40.0% | |
TGAAACGAAGCAGGTATATG+AGG | - | chr7_4:28868118-28868137 | Msa1148580:intron | 40.0% | |
GAAATCGCTCTTTCAGTAGT+CGG | - | chr7_4:28868152-28868171 | Msa1148580:CDS | 40.0% | |
GCTTCAGTATCATTGTTCTC+TGG | - | chr7_4:28868417-28868436 | Msa1148580:intron | 40.0% | |
GGGTTTGGAAGTGAGAAAAA+TGG | - | chr7_4:28867316-28867335 | Msa1148580:intron | 40.0% | |
AGAAAAATGGGAGCTATTGC+TGG | - | chr7_4:28867329-28867348 | Msa1148580:CDS | 40.0% | |
TGGAGAAGAGTTGTCGAAAT+GGG | - | chr7_4:28867349-28867368 | Msa1148580:CDS | 40.0% | |
TCGAAATGGGAGAAGATGAA+TGG | - | chr7_4:28867362-28867381 | Msa1148580:CDS | 40.0% | |
GAGAAGATGAATGGAGTTAG+TGG | - | chr7_4:28867371-28867390 | Msa1148580:CDS | 40.0% | |
CTGCTAATGAATCTGCAGAT+TGG | - | chr7_4:28867453-28867472 | Msa1148580:intron | 40.0% | |
AACCTTCACGCAATGTATTC+CGG | + | chr7_4:28867508-28867527 | None:intergenic | 40.0% | |
TTTCCAAGTGCCTACACATT+TGG | - | chr7_4:28867533-28867552 | Msa1148580:CDS | 40.0% | |
TTACCAAATGTGTAGGCACT+TGG | + | chr7_4:28867539-28867558 | None:intergenic | 40.0% | |
AGTCTTAATCCTCAGTTCCA+GGG | + | chr7_4:28867717-28867736 | None:intergenic | 40.0% | |
TGAAACGAAGCAGGTATATG+AGG | - | chr7_4:28868118-28868137 | Msa1148580:intron | 40.0% | |
GAAATCGCTCTTTCAGTAGT+CGG | - | chr7_4:28868152-28868171 | Msa1148580:CDS | 40.0% | |
GCTTCAGTATCATTGTTCTC+TGG | - | chr7_4:28868417-28868436 | Msa1148580:intron | 40.0% | |
TGAGGTGGAAAAAGAGGGTT+TGG | - | chr7_4:28867301-28867320 | Msa1148580:intron | 45.0% | |
CTGGAGAAGAGTTGTCGAAA+TGG | - | chr7_4:28867348-28867367 | Msa1148580:CDS | 45.0% | |
TACCGGAATACATTGCGTGA+AGG | - | chr7_4:28867503-28867522 | Msa1148580:intron | 45.0% | |
ATTCTAAGTTCGGTCGGGTT+TGG | + | chr7_4:28867678-28867697 | None:intergenic | 45.0% | |
TTATCAAAACCCCTTCTCCC+TGG | - | chr7_4:28867697-28867716 | Msa1148580:intron | 45.0% | |
GAGTCTTAATCCTCAGTTCC+AGG | + | chr7_4:28867718-28867737 | None:intergenic | 45.0% | |
! | TGGTGGCAGACAGAGTATTT+CGG | - | chr7_4:28868087-28868106 | Msa1148580:intron | 45.0% |
ACGAAGCAGGTATATGAGGA+AGG | - | chr7_4:28868122-28868141 | Msa1148580:intron | 45.0% | |
AGGTATATGAGGAAGGAGCT+AGG | - | chr7_4:28868129-28868148 | Msa1148580:intron | 45.0% | |
GGTATATGAGGAAGGAGCTA+GGG | - | chr7_4:28868130-28868149 | Msa1148580:intron | 45.0% | |
TGAGGTGGAAAAAGAGGGTT+TGG | - | chr7_4:28867301-28867320 | Msa1148580:intron | 45.0% | |
CTGGAGAAGAGTTGTCGAAA+TGG | - | chr7_4:28867348-28867367 | Msa1148580:CDS | 45.0% | |
TACCGGAATACATTGCGTGA+AGG | - | chr7_4:28867503-28867522 | Msa1148580:intron | 45.0% | |
ATTCTAAGTTCGGTCGGGTT+TGG | + | chr7_4:28867678-28867697 | None:intergenic | 45.0% | |
TTATCAAAACCCCTTCTCCC+TGG | - | chr7_4:28867697-28867716 | Msa1148580:intron | 45.0% | |
GAGTCTTAATCCTCAGTTCC+AGG | + | chr7_4:28867718-28867737 | None:intergenic | 45.0% | |
! | TGGTGGCAGACAGAGTATTT+CGG | - | chr7_4:28868087-28868106 | Msa1148580:intron | 45.0% |
ACGAAGCAGGTATATGAGGA+AGG | - | chr7_4:28868122-28868141 | Msa1148580:intron | 45.0% | |
AGGTATATGAGGAAGGAGCT+AGG | - | chr7_4:28868129-28868148 | Msa1148580:intron | 45.0% | |
GGTATATGAGGAAGGAGCTA+GGG | - | chr7_4:28868130-28868149 | Msa1148580:intron | 45.0% | |
GCTTAGGCCTTTGAACGAGA+AGG | - | chr7_4:28867424-28867443 | Msa1148580:intron | 50.0% | |
ATCCTCAGTTCCAGGGAGAA+GGG | + | chr7_4:28867710-28867729 | None:intergenic | 50.0% | |
AATCCTCAGTTCCAGGGAGA+AGG | + | chr7_4:28867711-28867730 | None:intergenic | 50.0% | |
! | GGTGGCAGACAGAGTATTTC+GGG | - | chr7_4:28868088-28868107 | Msa1148580:intron | 50.0% |
! | GTGGCAGACAGAGTATTTCG+GGG | - | chr7_4:28868089-28868108 | Msa1148580:intron | 50.0% |
ATCGCTCTTTCAGTAGTCGG+TGG | - | chr7_4:28868155-28868174 | Msa1148580:CDS | 50.0% | |
GCATATGGGCAAACAAGCAG+TGG | - | chr7_4:28868282-28868301 | Msa1148580:CDS | 50.0% | |
! | GCACTGACAACACTCCACTT+AGG | - | chr7_4:28868574-28868593 | Msa1148580:five_prime_UTR | 50.0% |
GGATCATCACGCAACCTAAG+TGG | + | chr7_4:28868591-28868610 | None:intergenic | 50.0% | |
GCTTAGGCCTTTGAACGAGA+AGG | - | chr7_4:28867424-28867443 | Msa1148580:intron | 50.0% | |
ATCCTCAGTTCCAGGGAGAA+GGG | + | chr7_4:28867710-28867729 | None:intergenic | 50.0% | |
AATCCTCAGTTCCAGGGAGA+AGG | + | chr7_4:28867711-28867730 | None:intergenic | 50.0% | |
! | GGTGGCAGACAGAGTATTTC+GGG | - | chr7_4:28868088-28868107 | Msa1148580:intron | 50.0% |
! | GTGGCAGACAGAGTATTTCG+GGG | - | chr7_4:28868089-28868108 | Msa1148580:intron | 50.0% |
ATCGCTCTTTCAGTAGTCGG+TGG | - | chr7_4:28868155-28868174 | Msa1148580:CDS | 50.0% | |
GCATATGGGCAAACAAGCAG+TGG | - | chr7_4:28868282-28868301 | Msa1148580:CDS | 50.0% | |
! | GCACTGACAACACTCCACTT+AGG | - | chr7_4:28868574-28868593 | Msa1148580:five_prime_UTR | 50.0% |
GGATCATCACGCAACCTAAG+TGG | + | chr7_4:28868591-28868610 | None:intergenic | 50.0% | |
TCCTCAGTTCCAGGGAGAAG+GGG | + | chr7_4:28867709-28867728 | None:intergenic | 55.0% | |
GGGTGACTGTGAAACGAAGC+AGG | - | chr7_4:28868109-28868128 | Msa1148580:intron | 55.0% | |
TCCTCAGTTCCAGGGAGAAG+GGG | + | chr7_4:28867709-28867728 | None:intergenic | 55.0% | |
GGGTGACTGTGAAACGAAGC+AGG | - | chr7_4:28868109-28868128 | Msa1148580:intron | 55.0% | |
ACCCCTTCTCCCTGGAACTG+AGG | - | chr7_4:28867705-28867724 | Msa1148580:intron | 60.0% | |
ACCCCTTCTCCCTGGAACTG+AGG | - | chr7_4:28867705-28867724 | Msa1148580:intron | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7_4 | gene | 28867076 | 28868614 | 28867076 | ID=Msa1148580;Name=Msa1148580 |
chr7_4 | mRNA | 28867076 | 28868614 | 28867076 | ID=Msa1148580-mRNA-1;Parent=Msa1148580;Name=Msa1148580-mRNA-1;_AED=0.10;_eAED=0.10;_QI=136|1|0.8|1|0.75|0.6|5|0|174 |
chr7_4 | exon | 28867076 | 28867189 | 28867076 | ID=Msa1148580-mRNA-1:exon:7086;Parent=Msa1148580-mRNA-1 |
chr7_4 | exon | 28867319 | 28867419 | 28867319 | ID=Msa1148580-mRNA-1:exon:7085;Parent=Msa1148580-mRNA-1 |
chr7_4 | exon | 28867505 | 28867594 | 28867505 | ID=Msa1148580-mRNA-1:exon:7084;Parent=Msa1148580-mRNA-1 |
chr7_4 | exon | 28868136 | 28868429 | 28868136 | ID=Msa1148580-mRNA-1:exon:7083;Parent=Msa1148580-mRNA-1 |
chr7_4 | exon | 28868553 | 28868614 | 28868553 | ID=Msa1148580-mRNA-1:exon:7082;Parent=Msa1148580-mRNA-1 |
chr7_4 | five_prime_UTR | 28868553 | 28868614 | 28868553 | ID=Msa1148580-mRNA-1:five_prime_utr;Parent=Msa1148580-mRNA-1 |
chr7_4 | five_prime_UTR | 28868356 | 28868429 | 28868356 | ID=Msa1148580-mRNA-1:five_prime_utr;Parent=Msa1148580-mRNA-1 |
chr7_4 | CDS | 28868136 | 28868355 | 28868136 | ID=Msa1148580-mRNA-1:cds;Parent=Msa1148580-mRNA-1 |
chr7_4 | CDS | 28867505 | 28867594 | 28867505 | ID=Msa1148580-mRNA-1:cds;Parent=Msa1148580-mRNA-1 |
chr7_4 | CDS | 28867319 | 28867419 | 28867319 | ID=Msa1148580-mRNA-1:cds;Parent=Msa1148580-mRNA-1 |
chr7_4 | CDS | 28867076 | 28867189 | 28867076 | ID=Msa1148580-mRNA-1:cds;Parent=Msa1148580-mRNA-1 |
Gene Sequence |
Protein sequence |