AlfalfaGEDB | Msa0428170

M. sativa cultivar zhongmu-4 / Msa0428170

KEGG: -
GO: GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007275 GO:0008150 GO:0009791 GO:0009909 GO:0009910 GO:0010228 GO:0010321 GO:0022414 GO:0032501 GO:0032502 GO:0040034 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048506 GO:0048509 GO:0048510 GO:0048519 GO:0048580 GO:0048581 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0051093 GO:0051239 GO:0051241 GO:0061458 GO:0065007 GO:2000026 GO:2000241 GO:2000242
PFAM: PF07899.14

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0428170	XP_003602718.2	93.614	642	41	0	1	642	1	642	0.0	1152

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0428170	sp\|P0DH90\|FRIGI_ARATH	36.628	516	276	10	28	537	57	527	2.16e-90	295

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0428170	G7J2Q4	93.614	642	41	0	1	642	1	642	0.0	1152

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0003220	Msa0428170	0.800963	1.126215e-48	-8.615850e-47
Msa0008410	Msa0428170	0.868926	4.540917e-66	-8.615850e-47
Msa0010020	Msa0428170	0.823528	1.319493e-53	-8.615850e-47
Msa0027390	Msa0428170	0.808255	3.387855e-50	-8.615850e-47
Msa0029630	Msa0428170	0.809163	2.167043e-50	-8.615850e-47
Msa0030300	Msa0428170	0.800161	1.641231e-48	-8.615850e-47
Msa0033880	Msa0428170	0.810484	1.126323e-50	-8.615850e-47
Msa0038000	Msa0428170	0.823816	1.129914e-53	-8.615850e-47
Msa0038440	Msa0428170	0.819296	1.251488e-52	-8.615850e-47
Msa0039250	Msa0428170	0.802913	4.477507e-49	-8.615850e-47

Showing 1 to 10 of 233 entries

Previous1 2 3 4 5…24Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0428170	MtrunA17_Chr3g0131341	93.614	642	41	0	1	642	1	642	0.0	1152
Msa0428170	MtrunA17_Chr8g0337661	27.076	277	193	6	155	425	175	448	1.47e-25	111
Msa0428170	MtrunA17_Chr8g0337651	26.165	279	193	7	155	425	175	448	4.04e-23	103
Msa0428170	MtrunA17_Chr4g0053711	23.659	410	279	10	44	425	36	439	8.15e-20	93.6
Msa0428170	MtrunA17_Chr1g0205391	25.852	352	207	10	125	462	106	417	4.04e-17	84.7
Msa0428170	MtrunA17_Chr8g0390621	26.165	279	182	9	154	426	121	381	2.51e-13	72.8
Msa0428170	MtrunA17_Chr5g0445281	23.158	285	193	7	154	433	127	390	8.53e-13	71.2

Showing 1 to 7 of 7 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0428170	AT4G00650.1	39.655	290	138	6	28	316	57	310	3.11e-55	191
Msa0428170	AT5G48385.1	27.046	281	190	9	155	425	178	453	3.34e-22	101
Msa0428170	AT3G22440.1	26.911	327	196	10	154	468	133	428	2.00e-15	80.1
Msa0428170	AT4G14900.1	23.881	335	198	11	154	468	129	426	8.09e-13	71.6

Showing 1 to 4 of 4 entries

Previous1Next

Find 156 sgRNAs with CRISPR-Local

Find 392 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCGAAATCAATTGCTGA+TGG	0.597725	3_2:-78966923	Msa0428170:CDS
AAAGATATTCGTGATGTCAC+TGG	0.492624	3_2:-78963508	Msa0428170:CDS
AAAGGTATAAGCCAAGTCAA+GGG	0.641496	3_2:+78963850	None:intergenic
AAATGAATTCAGTACTGTCT+GGG	0.506777	3_2:+78963805	None:intergenic
AAATTGGTGTTTGAATGCAT+TGG	0.613256	3_2:-78966623	Msa0428170:CDS
AAATTTCTCTTCAAACCCAA+AGG	0.615925	3_2:+78963832	None:intergenic
AAGAGACTCGTTGTTGAAGG+TGG	0.604637	3_2:-78966425	Msa0428170:CDS
AAGCTGACTATCCTATAGGA+TGG	0.636412	3_2:+78962787	None:intergenic
AATCCCGGTGGCACTGAAAA+AGG	0.281228	3_2:-78966660	Msa0428170:CDS
AATGAATTCAGTACTGTCTG+GGG	0.662675	3_2:+78963806	None:intergenic

Showing 1 to 10 of 156 entries

Previous1 2 3 4 5…16Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
CAATTCAAGCTTTCAAAAAC+AGG	-	chr3_2:78962795-78962814	Msa0428170:three_prime_UTR	30.0%
TGTTGAAAGTGAAGCAAAAA+TGG	-	chr3_2:78963387-78963406	Msa0428170:CDS	30.0%
AAAAATGGAACGTAAACTGA+AGG	-	chr3_2:78963402-78963421	Msa0428170:CDS	30.0%
ATGTATTGTATACATGCCTT+TGG	-	chr3_2:78963655-78963674	Msa0428170:intron	30.0%
TGTATTGTATACATGCCTTT+GGG	-	chr3_2:78963656-78963675	Msa0428170:intron	30.0%
TATATATCCTACATTCCCAA+AGG	+	chr3_2:78963674-78963693	None:intergenic	30.0%
TGAAAAACAAACCAACAGTA+TGG	+	chr3_2:78963858-78963877	None:intergenic	30.0%
CAATTGAATGATCAAACATG+TGG	+	chr3_2:78964236-78964255	None:intergenic	30.0%
CATGTTTGATCATTCAATTG+TGG	-	chr3_2:78964236-78964255	Msa0428170:intron	30.0%
TGATATGATTGTAAGAGCAA+TGG	-	chr3_2:78964911-78964930	Msa0428170:intron	30.0%

Showing 1 to 10 of 392 entries

Previous1 2 3 4 5…40Next

Chromosome	Type	Strat	End	Strand	Name
chr3_2	gene	78962541	78967363	78962541	ID=Msa0428170;Name=Msa0428170
chr3_2	mRNA	78962541	78967363	78962541	ID=Msa0428170-mRNA-1;Parent=Msa0428170;Name=Msa0428170-mRNA-1;_AED=0.01;_eAED=0.01;_QI=139\|1\|1\|1\|1\|1\|3\|333\|642
chr3_2	exon	78962541	78963656	78962541	ID=Msa0428170-mRNA-1:exon:21099;Parent=Msa0428170-mRNA-1
chr3_2	exon	78963742	78963914	78963742	ID=Msa0428170-mRNA-1:exon:21098;Parent=Msa0428170-mRNA-1
chr3_2	exon	78966252	78967363	78966252	ID=Msa0428170-mRNA-1:exon:21097;Parent=Msa0428170-mRNA-1
chr3_2	five_prime_UTR	78967225	78967363	78967225	ID=Msa0428170-mRNA-1:five_prime_utr;Parent=Msa0428170-mRNA-1
chr3_2	CDS	78966252	78967224	78966252	ID=Msa0428170-mRNA-1:cds;Parent=Msa0428170-mRNA-1
chr3_2	CDS	78963742	78963914	78963742	ID=Msa0428170-mRNA-1:cds;Parent=Msa0428170-mRNA-1
chr3_2	CDS	78962874	78963656	78962874	ID=Msa0428170-mRNA-1:cds;Parent=Msa0428170-mRNA-1
chr3_2	three_prime_UTR	78962541	78962873	78962541	ID=Msa0428170-mRNA-1:three_prime_utr;Parent=Msa0428170-mRNA-1

Gene Sequence

>Msa0428170

ATGGAAGAAAATAACCACTCCACAGCCTCCGACGCTCCAATTCCGCCGGAAAACCAACACGACGCCGGCGCCAATATTTCGAAATCGGTGAATGAACTCAACGATTTGTCAATTTCAATTCAAGCTTTCAAAAACAGGTACGATGAACTTCAAAATCATCTCAATTTCATTGAACACGCCATCGAAACCAGAACCAAAGAACTCGAAGCCCTAGGCACCACCACCGCCGCAAATGTAGTCACCGATAACGGTAACATTGTTCCATCTGAACCAGAATCGAAACCGAAATCAATTGCTGATGGCGAAGAAATAGAAGAAGAAGATCCTGAAGAAGAAGAAGAAGAAGAAGATCCGGAAGAAGAAGAAGAGGAGGTAGAAGAAGAAGTAGAAGAGGTTGAAGAAGAAGTGAAAAAAGAAGAACAACAAGAACAAAAAGAAGAAGAAAAAGGTGAGCCTCACTCGCTGTGCAAAACGATGAATAGCCGTGGTTTGCGAAAGTATATACTTACGCATCTATCTGAAACGCCGTCGCTTAAGGAAAAAATCCCGGTGGCACTGAAAAAGGCGCCGGAACCGGCAAAATTGGTGTTTGAATGCATTGGTAGATTTTACCTTCAAGGAAGCAAAGCCTATACAACAAACTCACCGATGATTACTGCGAGGCAAGCTTCAATTTTGGTTTTGGAATACTATCTGATGTCTGGCTGTGTTGAAAGTGAAGCAAAAATGGAACGTAAACTGAAGGCAGAAGCTGCAGATGCAGCGGGTGCATGGAGGAAGAGACTCGTTGTTGAAGGTGGTGTGGCTATGGCAAGTGAAATGGATGCAAGAGGTTTGACTCTTTTTCTTGCGTGCTTTGGGATTCATGGTGTTTTTAGGAATGAGGATATTGCCAACTTGGTTCGTTTGAGCAAACCTGGAGAAATCTCGCACCTTCTTCGCGTTTCTGGGAGCCTTTCTAGCAGGGTTTCAGATATTGCTCAGGGAATGATGAAAAAGGGCAAAGTTGTTGAAGCCCTTGACTTGGCTTATACCTTTGGGTTTGAAGAGAAATTTTCTCCCCAGACAGTACTGAATTCATTTCTACAAAAGTCTAATGAAGTTTGGAAGAAAGCAAAACAAGCACGTGATGTTCCTAGTTTGCTGAATAAAGCAAATGGAAAATATTTATCTGATTTGAAATCGGTTGTCAACTGTTTGGAAGGTCACAAACTTGATTTTGCAAAACTTCTTCCTGATTGGAAACTTAAGGATACAATTCTCAAATTGGAGAAAGATATTCGTGATGTCACTGGAAAAATTGAAGACAATTCAACGTCCAAGAGAAAATTGGACAAAAGCAGTGCATCAAAGAAAGTGAGTGTTCCAGACACAAAACGAACAAGGCACGCTGTGAGAGATCCTTATGTGGCATCACCTTCAGTAACTACCTTGCAAAAGCAAAGGATTGCTGGTCATATGGATGGCAGTTCATATGATAGTTCATTAACAGCACATTTTCTGGAGGGTAGATCCTATGGCTACCCAAATAATTATTCCACTGTAGCATCTGCTGCACAAATTGGATCTGTTTCAGGGTCATTACCCGAAGGTTATCTTGGAAGGGGAGTGTCAATTGGGGGAGCCATAGGTGGTCCACTTTCTGGCTATCAGAGTGATATGCCAATTGATAATGTTGGGACAACGCTGAATAGCAGTAGCTCTCTGTATAGTAGATTGCATAGTGTAGATGAAGGGGCATTATCTTACGGTAGATCAGTCGAGCCGAGTTTTGTAGGACAACCTTCATCGGCGCGAGTAAATCATATGTATGGGAGAACATCTGCAGAAGGTTATGCAGGTTTGCCAGATCATCACTCTATTGGTGTTCCTAGTCACGGCGGAGGTTCTGATTTGTATAGCTTTGCTGATTCTGTATTCGATGTGTAG

Protein sequence

>Msa0428170

MEENNHSTASDAPIPPENQHDAGANISKSVNELNDLSISIQAFKNRYDELQNHLNFIEHAIETRTKELEALGTTTAANVVTDNGNIVPSEPESKPKSIADGEEIEEEDPEEEEEEEDPEEEEEEVEEEVEEVEEEVKKEEQQEQKEEEKGEPHSLCKTMNSRGLRKYILTHLSETPSLKEKIPVALKKAPEPAKLVFECIGRFYLQGSKAYTTNSPMITARQASILVLEYYLMSGCVESEAKMERKLKAEAADAAGAWRKRLVVEGGVAMASEMDARGLTLFLACFGIHGVFRNEDIANLVRLSKPGEISHLLRVSGSLSSRVSDIAQGMMKKGKVVEALDLAYTFGFEEKFSPQTVLNSFLQKSNEVWKKAKQARDVPSLLNKANGKYLSDLKSVVNCLEGHKLDFAKLLPDWKLKDTILKLEKDIRDVTGKIEDNSTSKRKLDKSSASKKVSVPDTKRTRHAVRDPYVASPSVTTLQKQRIAGHMDGSSYDSSLTAHFLEGRSYGYPNNYSTVASAAQIGSVSGSLPEGYLGRGVSIGGAIGGPLSGYQSDMPIDNVGTTLNSSSSLYSRLHSVDEGALSYGRSVEPSFVGQPSSARVNHMYGRTSAEGYAGLPDHHSIGVPSHGGGSDLYSFADSVFDV*