Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1163630 | XP_013449852.1 | 94.062 | 421 | 23 | 1 | 1 | 419 | 1 | 421 | 0.0 | 764 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1163630 | sp|Q0V7S6|FK125_ARATH | 51.090 | 413 | 177 | 7 | 28 | 419 | 34 | 442 | 6.67e-136 | 399 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1163630 | A0A072UDK6 | 94.062 | 421 | 23 | 1 | 1 | 419 | 1 | 421 | 0.0 | 764 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0043980 | Msa1163630 | 0.809599 | 1.747317e-50 | -8.615850e-47 |
| Msa0090570 | Msa1163630 | 0.811476 | 6.870257e-51 | -8.615850e-47 |
| Msa0604290 | Msa1163630 | 0.808288 | 3.333842e-50 | -8.615850e-47 |
| Msa0657120 | Msa1163630 | 0.832451 | 9.381114e-56 | -8.615850e-47 |
| Msa0682680 | Msa1163630 | 0.807419 | 5.101830e-50 | -8.615850e-47 |
| Msa0685090 | Msa1163630 | 0.801222 | 9.967157e-49 | -8.615850e-47 |
| Msa0701100 | Msa1163630 | 0.818597 | 1.803804e-52 | -8.615850e-47 |
| Msa0746170 | Msa1163630 | 0.802059 | 6.714889e-49 | -8.615850e-47 |
| Msa0746210 | Msa1163630 | 0.804191 | 2.431871e-49 | -8.615850e-47 |
| Msa0138020 | Msa1163630 | 0.809021 | 2.324611e-50 | -8.615850e-47 |
| Msa0160960 | Msa1163630 | 0.810180 | 1.310510e-50 | -8.615850e-47 |
| Msa0183850 | Msa1163630 | 0.813168 | 2.933488e-51 | -8.615850e-47 |
| Msa0207030 | Msa1163630 | 0.809797 | 1.584410e-50 | -8.615850e-47 |
| Msa0233370 | Msa1163630 | 0.806603 | 7.592847e-50 | -8.615850e-47 |
| Msa0388730 | Msa1163630 | 0.814410 | 1.562578e-51 | -8.615850e-47 |
| Msa0994370 | Msa1163630 | 0.824704 | 6.987742e-54 | -8.615850e-47 |
| Msa0303150 | Msa1163630 | 0.827477 | 1.531363e-54 | -8.615850e-47 |
| Msa0305410 | Msa1163630 | 0.803700 | 3.076328e-49 | -8.615850e-47 |
| Msa1163630 | Msa1207310 | 0.803337 | 3.657954e-49 | -8.615850e-47 |
| Msa1163630 | Msa1270660 | 0.809797 | 1.584585e-50 | -8.615850e-47 |
| Msa1163630 | Msa1295330 | 0.801322 | 9.510558e-49 | -8.615850e-47 |
| Msa1163630 | Msa1316360 | 0.808478 | 3.036557e-50 | -8.615850e-47 |
| Msa1163630 | Msa1376110 | 0.815556 | 8.700708e-52 | -8.615850e-47 |
| Msa1163630 | Msa1382020 | 0.810826 | 9.501444e-51 | -8.615850e-47 |
| Msa1163630 | Msa1400930 | 0.816993 | 4.151475e-52 | -8.615850e-47 |
| Msa1163630 | Msa1407600 | 0.800498 | 1.400940e-48 | -8.615850e-47 |
| Msa1163630 | Msa1434420 | -0.828896 | 6.965190e-55 | -8.615850e-47 |
| Msa0518170 | Msa1163630 | 0.804486 | 2.111282e-49 | -8.615850e-47 |
| Msa0856960 | Msa1163630 | 0.820633 | 6.186651e-53 | -8.615850e-47 |
| Msa0890550 | Msa1163630 | 0.812845 | 3.453452e-51 | -8.615850e-47 |
| Msa0921420 | Msa1163630 | 0.804079 | 2.566326e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1163630 | MtrunA17_Chr7g0260891 | 94.062 | 421 | 23 | 1 | 1 | 419 | 1 | 421 | 0.0 | 764 |
| Msa1163630 | MtrunA17_Chr7g0260051 | 29.091 | 220 | 141 | 7 | 30 | 245 | 2 | 210 | 3.97e-16 | 79.3 |
| Msa1163630 | MtrunA17_Chr2g0281551 | 26.027 | 219 | 142 | 5 | 84 | 290 | 25 | 235 | 4.32e-12 | 67.4 |
| Msa1163630 | MtrunA17_Chr4g0063531 | 24.898 | 245 | 164 | 7 | 29 | 270 | 64 | 291 | 7.17e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1163630 | AT4G03030.1 | 51.090 | 413 | 177 | 7 | 28 | 419 | 34 | 442 | 6.78e-137 | 399 |
| Msa1163630 | AT1G16250.2 | 26.706 | 337 | 216 | 9 | 32 | 359 | 8 | 322 | 6.05e-19 | 88.6 |
| Msa1163630 | AT1G16250.1 | 26.706 | 337 | 216 | 9 | 32 | 359 | 8 | 322 | 6.05e-19 | 88.6 |
| Msa1163630 | AT2G24540.1 | 25.816 | 337 | 147 | 14 | 32 | 307 | 28 | 322 | 1.15e-12 | 69.3 |
| Msa1163630 | AT1G55270.1 | 25.217 | 230 | 154 | 8 | 32 | 259 | 78 | 291 | 4.67e-11 | 64.7 |
Find 144 sgRNAs with CRISPR-Local
Find 235 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATAGTTCCTGTCTTCTTAT+AGG | 0.206501 | 7_4:+54981321 | None:intergenic |
| AGAGGGGAGAGAGGGAGTTT+AGG | 0.214883 | 7_4:-54983057 | Msa1163630:CDS |
| GAGGGGAGAGAGGGAGTTTA+GGG | 0.244532 | 7_4:-54983056 | Msa1163630:CDS |
| TATGCGGTGGTTTCGAATTC+CGG | 0.251227 | 7_4:-54983235 | Msa1163630:CDS |
| AGTGGTTCGATGACTGTTTC+GGG | 0.256388 | 7_4:-54983019 | Msa1163630:CDS |
| GCATATTGATCAGCTATTAT+TGG | 0.258359 | 7_4:-54981004 | Msa1163630:three_prime_UTR |
| GGGGTGATGGGGAGAATGTT+AGG | 0.265069 | 7_4:-54982913 | Msa1163630:CDS |
| CGTTTGGGAGATTAGGGATT+AGG | 0.279807 | 7_4:+54983689 | None:intergenic |
| AAGTGCAGATTTCCATGATT+TGG | 0.300592 | 7_4:+54983603 | None:intergenic |
| TCCTGTCTTCTTATAGGATC+TGG | 0.309647 | 7_4:+54981327 | None:intergenic |
| GAGAGGGAGTTTAGGGTGAT+TGG | 0.312871 | 7_4:-54983049 | Msa1163630:CDS |
| TACAATATATTCAGCACTTA+AGG | 0.312955 | 7_4:+54980974 | None:intergenic |
| GTTGGAGATGTGTGGGGTGA+TGG | 0.316696 | 7_4:-54982926 | Msa1163630:CDS |
| GATGGTGGTGGTGAAGGTGG+CGG | 0.317550 | 7_4:+54983718 | None:intergenic |
| TAGTGGTTCGATGACTGTTT+CGG | 0.319409 | 7_4:-54983020 | Msa1163630:CDS |
| TGTGTTGGGTTTGTGGAGAG+GGG | 0.325568 | 7_4:-54983073 | Msa1163630:CDS |
| GATCAATATGCATATTTATA+TGG | 0.326670 | 7_4:+54981016 | None:intergenic |
| GTGTGTTGGGTTTGTGGAGA+GGG | 0.327409 | 7_4:-54983074 | Msa1163630:CDS |
| GATGCGCTGCACAATGAATT+TGG | 0.330132 | 7_4:+54981145 | None:intergenic |
| TTGGAGATGTGTGGGGTGAT+GGG | 0.337403 | 7_4:-54982925 | Msa1163630:CDS |
| ATGGTGGTGGTGAAGGTGGC+GGG | 0.337432 | 7_4:+54983719 | None:intergenic |
| GGTGTGTTGGGTTTGTGGAG+AGG | 0.342922 | 7_4:-54983075 | Msa1163630:CDS |
| ATACTTCGTTTGGGAGATTA+GGG | 0.344605 | 7_4:+54983683 | None:intergenic |
| GATACTTCGTTTGGGAGATT+AGG | 0.345641 | 7_4:+54983682 | None:intergenic |
| ATTGTTCGTGATACTTCGTT+TGG | 0.347974 | 7_4:+54983673 | None:intergenic |
| CCTCCCCGTGGTTCAGCCTT+TGG | 0.353072 | 7_4:-54981424 | Msa1163630:CDS |
| GGAGGATCGGTGGGAGGAAA+TGG | 0.354749 | 7_4:-54983122 | Msa1163630:CDS |
| GGTGGTGGTGAAGGTGGCGG+GGG | 0.358073 | 7_4:+54983721 | None:intergenic |
| ATGATTTCCGATGAGAATTC+CGG | 0.367277 | 7_4:-54983781 | Msa1163630:CDS |
| GTACATCTCTTGACTTGATC+AGG | 0.369121 | 7_4:-54981068 | Msa1163630:three_prime_UTR |
| TGGTGGTGGTGAAGGTGGCG+GGG | 0.369586 | 7_4:+54983720 | None:intergenic |
| TCCGGTGAGATTGTGGTTGC+CGG | 0.372734 | 7_4:-54983217 | Msa1163630:CDS |
| TGCGGGGTGTGTTGGGTTTG+TGG | 0.386578 | 7_4:-54983080 | Msa1163630:CDS |
| TGAAATCAATTTCCAAATCA+TGG | 0.406574 | 7_4:-54983615 | Msa1163630:CDS |
| TGATGATTGTGGTTCTCCTT+TGG | 0.409764 | 7_4:-54982867 | Msa1163630:CDS |
| TTTGGTGTTGTTGTCGTAGC+TGG | 0.411310 | 7_4:-54981406 | Msa1163630:CDS |
| TGGGATTGGAGGATGGTTTG+TGG | 0.412264 | 7_4:-54982955 | Msa1163630:CDS |
| GGGTGATGGGGAGAATGTTA+GGG | 0.415945 | 7_4:-54982912 | Msa1163630:CDS |
| GATGGTTTGTGGCGTGAGGT+TGG | 0.422552 | 7_4:-54982944 | Msa1163630:CDS |
| GAAGACGAAGGACGATTAAT+CGG | 0.428822 | 7_4:+54983340 | None:intergenic |
| GCGTGAGGTTGGAGATGTGT+GGG | 0.435571 | 7_4:-54982933 | Msa1163630:CDS |
| GGTTTGTGGAGAGGGGAGAG+AGG | 0.435716 | 7_4:-54983066 | Msa1163630:CDS |
| AACTTCGCCGCCGTTCCGTT+TGG | 0.437112 | 7_4:-54983412 | Msa1163630:CDS |
| GTTTGTGGAGAGGGGAGAGA+GGG | 0.442563 | 7_4:-54983065 | Msa1163630:CDS |
| AACACCAAAGGCTGAACCAC+GGG | 0.445548 | 7_4:+54981420 | None:intergenic |
| TTGTTCGTGATACTTCGTTT+GGG | 0.449693 | 7_4:+54983674 | None:intergenic |
| AGGGTGATTGGTGGTTATAG+TGG | 0.451778 | 7_4:-54983037 | Msa1163630:CDS |
| GTGGTGATGGGATTGGAGGA+TGG | 0.453536 | 7_4:-54982962 | Msa1163630:CDS |
| CTCATATACCCAACGATTTG+AGG | 0.454221 | 7_4:+54981465 | None:intergenic |
| TCCTCCGTCGTTGACGGTGG+AGG | 0.456777 | 7_4:+54983751 | None:intergenic |
| AGGGCTGGGAAGATTGTTGT+TGG | 0.460840 | 7_4:-54982893 | Msa1163630:CDS |
| GGTTCTCATGTTTACATCAT+CGG | 0.462270 | 7_4:-54983391 | Msa1163630:CDS |
| AGATGCGGTGGTGATGGGAT+TGG | 0.472221 | 7_4:-54982969 | Msa1163630:CDS |
| AGCGGCGGGATCGAGGATTA+GGG | 0.474002 | 7_4:-54983167 | Msa1163630:CDS |
| TTAGGGATTAGGATTGATGA+TGG | 0.476251 | 7_4:+54983700 | None:intergenic |
| AGGGAGTTTAGGGTGATTGG+TGG | 0.480598 | 7_4:-54983046 | Msa1163630:CDS |
| TGAAATGTCCTCAAATCGTT+GGG | 0.482305 | 7_4:-54981473 | Msa1163630:CDS |
| GAGATTGTGGTTGCCGGAGG+TGG | 0.488014 | 7_4:-54983211 | Msa1163630:CDS |
| CAAATGCCGCGATCCACCTC+CGG | 0.488824 | 7_4:+54983198 | None:intergenic |
| TTGTAGAGATGCGGTGGTGA+TGG | 0.490289 | 7_4:-54982975 | Msa1163630:CDS |
| GATGGGGAGAATGTTAGGGC+TGG | 0.493211 | 7_4:-54982908 | Msa1163630:CDS |
| CCGTAAACGTGAGGGTTACA+CGG | 0.497083 | 7_4:+54983442 | None:intergenic |
| ATTGATGATGGTGGTGGTGA+AGG | 0.499274 | 7_4:+54983712 | None:intergenic |
| TGCGGTGGTGATGGGATTGG+AGG | 0.501742 | 7_4:-54982966 | Msa1163630:CDS |
| ATGGGGAGAATGTTAGGGCT+GGG | 0.501991 | 7_4:-54982907 | Msa1163630:CDS |
| TCCAGATCCTATAAGAAGAC+AGG | 0.502731 | 7_4:-54981328 | Msa1163630:CDS |
| ATGAAATGTCCTCAAATCGT+TGG | 0.505780 | 7_4:-54981474 | Msa1163630:CDS |
| GATGATGGTGGTGGTGAAGG+TGG | 0.507339 | 7_4:+54983715 | None:intergenic |
| TGTAGAGATGCGGTGGTGAT+GGG | 0.510227 | 7_4:-54982974 | Msa1163630:CDS |
| GATGAATCCTCCGTCGTTGA+CGG | 0.511794 | 7_4:+54983745 | None:intergenic |
| GGCGTGAGGTTGGAGATGTG+TGG | 0.512797 | 7_4:-54982934 | Msa1163630:CDS |
| CAGCGCATCATTTGACCACC+AGG | 0.513772 | 7_4:-54981131 | Msa1163630:three_prime_UTR |
| TGGAGATGTGTGGGGTGATG+GGG | 0.515207 | 7_4:-54982924 | Msa1163630:CDS |
| ACCACCAGGTTCCATGTAGG+TGG | 0.523915 | 7_4:-54981117 | Msa1163630:three_prime_UTR |
| TGTTTACATCATCGGTGGAT+CGG | 0.525243 | 7_4:-54983383 | Msa1163630:CDS |
| AGATACGGCGTGGAAATTGA+AGG | 0.527307 | 7_4:+54983508 | None:intergenic |
| ACTTCCACGAGGTGAAATCA+TGG | 0.528720 | 7_4:+54983264 | None:intergenic |
| GGGATCGAGGATTAGGGCGG+CGG | 0.547164 | 7_4:-54983161 | Msa1163630:CDS |
| TTACACGGCATAGGTGGAAG+TGG | 0.555547 | 7_4:+54983457 | None:intergenic |
| GGAGGATGGTTTGTGGCGTG+AGG | 0.558416 | 7_4:-54982948 | Msa1163630:CDS |
| TTCGAATTCCGGTGAGATTG+TGG | 0.561203 | 7_4:-54983224 | Msa1163630:CDS |
| CCCGCACGAAAACACGGCAA+CGG | 0.562967 | 7_4:+54983097 | None:intergenic |
| ATATCTACACGGCAAGTGAA+AGG | 0.566041 | 7_4:+54981241 | None:intergenic |
| CCTCCGTCGTTGACGGTGGA+GGG | 0.569467 | 7_4:+54983752 | None:intergenic |
| ACAAATATAAGCCACCTACA+TGG | 0.569652 | 7_4:+54981106 | None:intergenic |
| GCTGAATATATTGTAATGGA+TGG | 0.570126 | 7_4:-54980966 | Msa1163630:three_prime_UTR |
| AGACGAGCGTGATGAGCGTA+AGG | 0.572703 | 7_4:+54983637 | None:intergenic |
| GGAGCGTTACGACGTGGAGG+AGG | 0.573227 | 7_4:-54983140 | Msa1163630:CDS |
| TACATCTCTTGACTTGATCA+GGG | 0.574804 | 7_4:-54981067 | Msa1163630:three_prime_UTR |
| AAGTGCTGAATATATTGTAA+TGG | 0.575336 | 7_4:-54980970 | Msa1163630:three_prime_UTR |
| GTTGTTGGTGATGATGATTG+TGG | 0.576005 | 7_4:-54982878 | Msa1163630:CDS |
| GCGTTAACGTCGAAGAGATA+CGG | 0.576042 | 7_4:+54983493 | None:intergenic |
| CGACGTGGAGGAGGATCGGT+GGG | 0.577365 | 7_4:-54983131 | Msa1163630:CDS |
| ATGTAAACATGAGAACCAAA+CGG | 0.579349 | 7_4:+54983397 | None:intergenic |
| ACACACCCCGCACGAAAACA+CGG | 0.583750 | 7_4:+54983091 | None:intergenic |
| GAATCCTCCGTCGTTGACGG+TGG | 0.584072 | 7_4:+54983748 | None:intergenic |
| TCCGGCAACCACAATCTCAC+CGG | 0.586627 | 7_4:+54983216 | None:intergenic |
| GTGGTTCGATGACTGTTTCG+GGG | 0.587804 | 7_4:-54983018 | Msa1163630:CDS |
| GGGATTAGGATTGATGATGG+TGG | 0.590793 | 7_4:+54983703 | None:intergenic |
| TCTCATGTTTACATCATCGG+TGG | 0.591595 | 7_4:-54983388 | Msa1163630:CDS |
| CCCTCCACCGTCAACGACGG+AGG | 0.592904 | 7_4:-54983752 | Msa1163630:CDS |
| CGTGGAGGAGGATCGGTGGG+AGG | 0.594947 | 7_4:-54983128 | Msa1163630:CDS |
| CAACACCAAAGGCTGAACCA+CGG | 0.596661 | 7_4:+54981419 | None:intergenic |
| TGAGGGTTACACGGCATAGG+TGG | 0.601059 | 7_4:+54983451 | None:intergenic |
| GTGGAAATTGAAGGATTCTG+AGG | 0.602845 | 7_4:+54983517 | None:intergenic |
| TTGACCACCAGGTTCCATGT+AGG | 0.606590 | 7_4:-54981120 | Msa1163630:three_prime_UTR |
| CACAATTGGTCTGTGAATTG+TGG | 0.608733 | 7_4:-54981200 | Msa1163630:exon |
| TCTCTACAATACTCATCCAC+CGG | 0.613632 | 7_4:+54982989 | None:intergenic |
| TGGTTCGATGACTGTTTCGG+GGG | 0.617310 | 7_4:-54983017 | Msa1163630:CDS |
| ACATCAAGCATGAAAACCAA+AGG | 0.619973 | 7_4:+54982851 | None:intergenic |
| CGTGAGGTTGGAGATGTGTG+GGG | 0.620119 | 7_4:-54982932 | Msa1163630:CDS |
| ATTAGGATTGATGATGGTGG+TGG | 0.621130 | 7_4:+54983706 | None:intergenic |
| GTTACGACGTGGAGGAGGAT+CGG | 0.621685 | 7_4:-54983135 | Msa1163630:CDS |
| TTTCCCTCCACCGTCAACGA+CGG | 0.627781 | 7_4:-54983755 | Msa1163630:CDS |
| ACGTGAGGGTTACACGGCAT+AGG | 0.629013 | 7_4:+54983448 | None:intergenic |
| TGGAAATTGAAGGATTCTGA+GGG | 0.632981 | 7_4:+54983518 | None:intergenic |
| ACGATTTCACAGAAAGTCGA+AGG | 0.634437 | 7_4:-54981351 | Msa1163630:CDS |
| GGTGAGATTGTGGTTGCCGG+AGG | 0.634690 | 7_4:-54983214 | Msa1163630:CDS |
| TGACGGTGGAGGGAAATCGC+CGG | 0.636312 | 7_4:+54983762 | None:intergenic |
| GAAATCGCCGGAATTCTCAT+CGG | 0.638907 | 7_4:+54983774 | None:intergenic |
| GAGCGTAAGGAATCATTGAG+AGG | 0.640428 | 7_4:+54983650 | None:intergenic |
| TGGTTGCCGGAGGTGGATCG+CGG | 0.640713 | 7_4:-54983204 | Msa1163630:CDS |
| ATGAGAACCAAACGGAACGG+CGG | 0.644477 | 7_4:+54983405 | None:intergenic |
| TAAGCCACCTACATGGAACC+TGG | 0.644678 | 7_4:+54981113 | None:intergenic |
| GGCGGGATCGAGGATTAGGG+CGG | 0.646449 | 7_4:-54983164 | Msa1163630:CDS |
| CAGCACTAGTAATATCTACA+CGG | 0.646673 | 7_4:+54981230 | None:intergenic |
| TACACAAACCGTAAACGTGA+GGG | 0.647643 | 7_4:+54983434 | None:intergenic |
| AGCTACGACAACAACACCAA+AGG | 0.650508 | 7_4:+54981408 | None:intergenic |
| TTACACAAACCGTAAACGTG+AGG | 0.656934 | 7_4:+54983433 | None:intergenic |
| ACGACGTGGAGGAGGATCGG+TGG | 0.658596 | 7_4:-54983132 | Msa1163630:CDS |
| AACATGAGAACCAAACGGAA+CGG | 0.659463 | 7_4:+54983402 | None:intergenic |
| TGAGTATTGTAGAGATGCGG+TGG | 0.660486 | 7_4:-54982981 | Msa1163630:CDS |
| GGCGGAGCGTTACGACGTGG+AGG | 0.661628 | 7_4:-54983143 | Msa1163630:CDS |
| AACACTAACGAAGAAGACGA+AGG | 0.661764 | 7_4:+54983328 | None:intergenic |
| GGCGGCGGAGCGTTACGACG+TGG | 0.662264 | 7_4:-54983146 | Msa1163630:CDS |
| AAAGAAGACATGGAGAACAA+TGG | 0.662314 | 7_4:-54981275 | Msa1163630:CDS |
| TGGAAGTGGACACCACGCAA+CGG | 0.665549 | 7_4:+54983471 | None:intergenic |
| GCTTCCATGATTTCACCTCG+TGG | 0.675177 | 7_4:-54983268 | Msa1163630:CDS |
| ACACCAAAGGCTGAACCACG+GGG | 0.697166 | 7_4:+54981421 | None:intergenic |
| AACGTCGAAGAGATACGGCG+TGG | 0.713938 | 7_4:+54983498 | None:intergenic |
| GGATGAGTATTGTAGAGATG+CGG | 0.724542 | 7_4:-54982984 | Msa1163630:CDS |
| CCAAAGGCTGAACCACGGGG+AGG | 0.740753 | 7_4:+54981424 | None:intergenic |
| GCCACCTACATGGAACCTGG+TGG | 0.742534 | 7_4:+54981116 | None:intergenic |
| GCATAAGCAAAACTTCCACG+AGG | 0.817382 | 7_4:+54983253 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GAATTTCATATTATTAAGTT+TGG | - | chr7_4:54982012-54982031 | Msa1163630:intron | 15.0% |
| !! | AGATATTACAAAAAAATGTT+AGG | - | chr7_4:54982245-54982264 | Msa1163630:intron | 15.0% |
| !!! | ACATCTTATTTTTATAGTTT+AGG | - | chr7_4:54983538-54983557 | Msa1163630:CDS | 15.0% |
| !! | AAAAAAATGTTAGGATATGT+GGG | - | chr7_4:54982254-54982273 | Msa1163630:intron | 20.0% |
| !! | ATTTATTTGTTCATTACGTT+TGG | - | chr7_4:54982401-54982420 | Msa1163630:intron | 20.0% |
| !! | TGTAATCACATTTATTACTT+TGG | - | chr7_4:54982623-54982642 | Msa1163630:intron | 20.0% |
| !! | AGGGATTTATATATATGATT+GGG | + | chr7_4:54983062-54983081 | None:intergenic | 20.0% |
| !! | GATCAATATGCATATTTATA+TGG | + | chr7_4:54983701-54983720 | None:intergenic | 20.0% |
| ! | TGAAATCAATTTCCAAATCA+TGG | - | chr7_4:54981099-54981118 | Msa1163630:three_prime_UTR | 25.0% |
| !! | TCAATTTTCGTAATTTTTCG+TGG | - | chr7_4:54981414-54981433 | Msa1163630:CDS | 25.0% |
| !! | CAATTTTCGTAATTTTTCGT+GGG | - | chr7_4:54981415-54981434 | Msa1163630:CDS | 25.0% |
| ! | ATCAATGTCATACTATTAAG+TGG | - | chr7_4:54982177-54982196 | Msa1163630:intron | 25.0% |
| ! | CAAAAAAATGTTAGGATATG+TGG | - | chr7_4:54982253-54982272 | Msa1163630:intron | 25.0% |
| ! | TAACAAAGAGCAATGTAAAT+TGG | + | chr7_4:54982962-54982981 | None:intergenic | 25.0% |
| ! | AATTTACATTGCTCTTTGTT+AGG | - | chr7_4:54982961-54982980 | Msa1163630:CDS | 25.0% |
| ! | CAGGGATTTATATATATGAT+TGG | + | chr7_4:54983063-54983082 | None:intergenic | 25.0% |
| ! | ATAATCCAAAAAAGAAGACA+TGG | - | chr7_4:54983429-54983448 | Msa1163630:CDS | 25.0% |
| ! | TACAATATATTCAGCACTTA+AGG | + | chr7_4:54983743-54983762 | None:intergenic | 25.0% |
| !!! | AAGTGCTGAATATATTGTAA+TGG | - | chr7_4:54983744-54983763 | Msa1163630:CDS | 25.0% |
| !!! | TGTTACTTTGTTTTAAACTC+TGG | - | chr7_4:54983798-54983817 | Msa1163630:exon | 25.0% |
| ATGTAAACATGAGAACCAAA+CGG | + | chr7_4:54981320-54981339 | None:intergenic | 30.0% | |
| ! | TTGATGTCAATGAGATTTTC+AGG | - | chr7_4:54981879-54981898 | Msa1163630:intron | 30.0% |
| !!! | TCAGGTACTTCATTGTTTTT+TGG | - | chr7_4:54981897-54981916 | Msa1163630:intron | 30.0% |
| !!! | CAGGTACTTCATTGTTTTTT+GGG | - | chr7_4:54981898-54981917 | Msa1163630:intron | 30.0% |
| !!! | ACTTCATTGTTTTTTGGGTT+TGG | - | chr7_4:54981903-54981922 | Msa1163630:intron | 30.0% |
| TATTAAGTTTGGACATTCGT+TGG | - | chr7_4:54982023-54982042 | Msa1163630:intron | 30.0% | |
| TTGTCTTGATGTCTGATTAT+TGG | + | chr7_4:54982096-54982115 | None:intergenic | 30.0% | |
| ATGTCATACTATTAAGTGGT+TGG | - | chr7_4:54982181-54982200 | Msa1163630:intron | 30.0% | |
| TGTCATACTATTAAGTGGTT+GGG | - | chr7_4:54982182-54982201 | Msa1163630:intron | 30.0% | |
| GGCAATGTGCATAAATTATT+AGG | - | chr7_4:54982325-54982344 | Msa1163630:intron | 30.0% | |
| ! | GATAAAAAAGTACATCATGC+AGG | - | chr7_4:54982347-54982366 | Msa1163630:intron | 30.0% |
| TTGTTTACACACATCATGAT+TGG | - | chr7_4:54983006-54983025 | Msa1163630:CDS | 30.0% | |
| GCATATTGATCAGCTATTAT+TGG | - | chr7_4:54983710-54983729 | Msa1163630:CDS | 30.0% | |
| ! | GCTGAATATATTGTAATGGA+TGG | - | chr7_4:54983748-54983767 | Msa1163630:CDS | 30.0% |
| ATGATTTCCGATGAGAATTC+CGG | - | chr7_4:54980933-54980952 | Msa1163630:three_prime_UTR | 35.0% | |
| TTAGGGATTAGGATTGATGA+TGG | + | chr7_4:54981017-54981036 | None:intergenic | 35.0% | |
| ATACTTCGTTTGGGAGATTA+GGG | + | chr7_4:54981034-54981053 | None:intergenic | 35.0% | |
| TTGTTCGTGATACTTCGTTT+GGG | + | chr7_4:54981043-54981062 | None:intergenic | 35.0% | |
| ATTGTTCGTGATACTTCGTT+TGG | + | chr7_4:54981044-54981063 | None:intergenic | 35.0% | |
| AAGTGCAGATTTCCATGATT+TGG | + | chr7_4:54981114-54981133 | None:intergenic | 35.0% | |
| TGGAAATTGAAGGATTCTGA+GGG | + | chr7_4:54981199-54981218 | None:intergenic | 35.0% | |
| GGTTCTCATGTTTACATCAT+CGG | - | chr7_4:54981323-54981342 | Msa1163630:CDS | 35.0% | |
| ! | TTTTCGTAATTTTTCGTGGG+AGG | - | chr7_4:54981418-54981437 | Msa1163630:CDS | 35.0% |
| ACATCAAGCATGAAAACCAA+AGG | + | chr7_4:54981866-54981885 | None:intergenic | 35.0% | |
| AAGCTATGGATAAGTTGCAT+GGG | + | chr7_4:54982069-54982088 | None:intergenic | 35.0% | |
| AAAGCTATGGATAAGTTGCA+TGG | + | chr7_4:54982070-54982089 | None:intergenic | 35.0% | |
| TGATTATTGGCACAAAGCTA+TGG | + | chr7_4:54982083-54982102 | None:intergenic | 35.0% | |
| GATCAATCTCATTTCCTGAA+TGG | - | chr7_4:54982147-54982166 | Msa1163630:intron | 35.0% | |
| TAATATGATGCCTTGAAGTC+TGG | - | chr7_4:54982513-54982532 | Msa1163630:intron | 35.0% | |
| GCACATGAGATTCTCAATTA+TGG | - | chr7_4:54982553-54982572 | Msa1163630:intron | 35.0% | |
| ! | CTTCAACATTTTTCCTTCTG+TGG | - | chr7_4:54982681-54982700 | Msa1163630:intron | 35.0% |
| TAACCAAAGCTATGCTTTAC+TGG | - | chr7_4:54982734-54982753 | Msa1163630:intron | 35.0% | |
| TTTACTGGTCCATGATTATG+TGG | - | chr7_4:54982749-54982768 | Msa1163630:intron | 35.0% | |
| CATTCTACACCACATAATCA+TGG | + | chr7_4:54982761-54982780 | None:intergenic | 35.0% | |
| TGATTGTATCTCAAATCGAC+TGG | + | chr7_4:54982802-54982821 | None:intergenic | 35.0% | |
| ! | CCTATACAGTGTTGAATCAA+TGG | + | chr7_4:54982830-54982849 | None:intergenic | 35.0% |
| !! | CCATTGATTCAACACTGTAT+AGG | - | chr7_4:54982827-54982846 | Msa1163630:intron | 35.0% |
| TTCAACACTGTATAGGACAA+TGG | - | chr7_4:54982834-54982853 | Msa1163630:intron | 35.0% | |
| ATCATCTAGCAGACCAAAAA+TGG | - | chr7_4:54982928-54982947 | Msa1163630:CDS | 35.0% | |
| ! | ATTGGCAAGCATTCCATTTT+TGG | + | chr7_4:54982944-54982963 | None:intergenic | 35.0% |
| AACATAGTGATAGATCCAAC+TGG | + | chr7_4:54982988-54983007 | None:intergenic | 35.0% | |
| AGTTCAAGCAAAACAGTACA+GGG | + | chr7_4:54983081-54983100 | None:intergenic | 35.0% | |
| AAGTTCAAGCAAAACAGTAC+AGG | + | chr7_4:54983082-54983101 | None:intergenic | 35.0% | |
| GTATCCTCTACTATGTACAT+GGG | + | chr7_4:54983112-54983131 | None:intergenic | 35.0% | |
| TGTATCCTCTACTATGTACA+TGG | + | chr7_4:54983113-54983132 | None:intergenic | 35.0% | |
| AGAGGATACAATATCCTTGA+TGG | - | chr7_4:54983123-54983142 | Msa1163630:CDS | 35.0% | |
| ATGAAATGTCCTCAAATCGT+TGG | - | chr7_4:54983240-54983259 | Msa1163630:CDS | 35.0% | |
| TGAAATGTCCTCAAATCGTT+GGG | - | chr7_4:54983241-54983260 | Msa1163630:CDS | 35.0% | |
| CATAGTTCCTGTCTTCTTAT+AGG | + | chr7_4:54983396-54983415 | None:intergenic | 35.0% | |
| !!! | GTTCTCCATGTCTTCTTTTT+TGG | + | chr7_4:54983437-54983456 | None:intergenic | 35.0% |
| AAAGAAGACATGGAGAACAA+TGG | - | chr7_4:54983439-54983458 | Msa1163630:CDS | 35.0% | |
| CAGCACTAGTAATATCTACA+CGG | + | chr7_4:54983487-54983506 | None:intergenic | 35.0% | |
| ACAAATATAAGCCACCTACA+TGG | + | chr7_4:54983611-54983630 | None:intergenic | 35.0% | |
| ! | TACATCTCTTGACTTGATCA+GGG | - | chr7_4:54983647-54983666 | Msa1163630:CDS | 35.0% |
| !! | ATTAGGATTGATGATGGTGG+TGG | + | chr7_4:54981011-54981030 | None:intergenic | 40.0% |
| GATACTTCGTTTGGGAGATT+AGG | + | chr7_4:54981035-54981054 | None:intergenic | 40.0% | |
| GTGGAAATTGAAGGATTCTG+AGG | + | chr7_4:54981200-54981219 | None:intergenic | 40.0% | |
| TACACAAACCGTAAACGTGA+GGG | + | chr7_4:54981283-54981302 | None:intergenic | 40.0% | |
| TTACACAAACCGTAAACGTG+AGG | + | chr7_4:54981284-54981303 | None:intergenic | 40.0% | |
| AACATGAGAACCAAACGGAA+CGG | + | chr7_4:54981315-54981334 | None:intergenic | 40.0% | |
| TCTCATGTTTACATCATCGG+TGG | - | chr7_4:54981326-54981345 | Msa1163630:CDS | 40.0% | |
| TGTTTACATCATCGGTGGAT+CGG | - | chr7_4:54981331-54981350 | Msa1163630:CDS | 40.0% | |
| GAAGACGAAGGACGATTAAT+CGG | + | chr7_4:54981377-54981396 | None:intergenic | 40.0% | |
| AACACTAACGAAGAAGACGA+AGG | + | chr7_4:54981389-54981408 | None:intergenic | 40.0% | |
| ! | TCGTGGAAGTTTTGCTTATG+CGG | - | chr7_4:54981463-54981482 | Msa1163630:CDS | 40.0% |
| TAGTGGTTCGATGACTGTTT+CGG | - | chr7_4:54981694-54981713 | Msa1163630:intron | 40.0% | |
| TCTCTACAATACTCATCCAC+CGG | + | chr7_4:54981728-54981747 | None:intergenic | 40.0% | |
| ! | GGATGAGTATTGTAGAGATG+CGG | - | chr7_4:54981730-54981749 | Msa1163630:intron | 40.0% |
| !! | GTTGTTGGTGATGATGATTG+TGG | - | chr7_4:54981836-54981855 | Msa1163630:intron | 40.0% |
| TGATGATTGTGGTTCTCCTT+TGG | - | chr7_4:54981847-54981866 | Msa1163630:intron | 40.0% | |
| CATTGATCACACTTCCATTC+AGG | + | chr7_4:54982164-54982183 | None:intergenic | 40.0% | |
| CATACTATTAAGTGGTTGGG+CGG | - | chr7_4:54982185-54982204 | Msa1163630:intron | 40.0% | |
| ATACTATTAAGTGGTTGGGC+GGG | - | chr7_4:54982186-54982205 | Msa1163630:intron | 40.0% | |
| ! | GGATTGGGTTGTAGAGATTT+AGG | - | chr7_4:54982207-54982226 | Msa1163630:intron | 40.0% |
| CGAAGCTCTGTAACTAATTG+TGG | - | chr7_4:54982304-54982323 | Msa1163630:intron | 40.0% | |
| GATTCTCAATTATGGAGACG+AGG | - | chr7_4:54982561-54982580 | Msa1163630:intron | 40.0% | |
| ! | AAGCAAAGCATTAGCCATCA+AGG | + | chr7_4:54983140-54983159 | None:intergenic | 40.0% |
| CTCATATACCCAACGATTTG+AGG | + | chr7_4:54983252-54983271 | None:intergenic | 40.0% | |
| ACGATTTCACAGAAAGTCGA+AGG | - | chr7_4:54983363-54983382 | Msa1163630:CDS | 40.0% | |
| TCCAGATCCTATAAGAAGAC+AGG | - | chr7_4:54983386-54983405 | Msa1163630:CDS | 40.0% | |
| TCCTGTCTTCTTATAGGATC+TGG | + | chr7_4:54983390-54983409 | None:intergenic | 40.0% | |
| ATATCTACACGGCAAGTGAA+AGG | + | chr7_4:54983476-54983495 | None:intergenic | 40.0% | |
| !!! | AGTGCTGTTTTGAGCACAAT+TGG | - | chr7_4:54983500-54983519 | Msa1163630:CDS | 40.0% |
| ! | CACAATTGGTCTGTGAATTG+TGG | - | chr7_4:54983514-54983533 | Msa1163630:CDS | 40.0% |
| ! | GTACATCTCTTGACTTGATC+AGG | - | chr7_4:54983646-54983665 | Msa1163630:CDS | 40.0% |
| GAAATCGCCGGAATTCTCAT+CGG | + | chr7_4:54980943-54980962 | None:intergenic | 45.0% | |
| !! | ATTGATGATGGTGGTGGTGA+AGG | + | chr7_4:54981005-54981024 | None:intergenic | 45.0% |
| !! | GGGATTAGGATTGATGATGG+TGG | + | chr7_4:54981014-54981033 | None:intergenic | 45.0% |
| CGTTTGGGAGATTAGGGATT+AGG | + | chr7_4:54981028-54981047 | None:intergenic | 45.0% | |
| GAGCGTAAGGAATCATTGAG+AGG | + | chr7_4:54981067-54981086 | None:intergenic | 45.0% | |
| AGATACGGCGTGGAAATTGA+AGG | + | chr7_4:54981209-54981228 | None:intergenic | 45.0% | |
| GCGTTAACGTCGAAGAGATA+CGG | + | chr7_4:54981224-54981243 | None:intergenic | 45.0% | |
| ACTTCCACGAGGTGAAATCA+TGG | + | chr7_4:54981453-54981472 | None:intergenic | 45.0% | |
| GCATAAGCAAAACTTCCACG+AGG | + | chr7_4:54981464-54981483 | None:intergenic | 45.0% | |
| ! | TGGAAGTTTTGCTTATGCGG+TGG | - | chr7_4:54981466-54981485 | Msa1163630:CDS | 45.0% |
| TATGCGGTGGTTTCGAATTC+CGG | - | chr7_4:54981479-54981498 | Msa1163630:CDS | 45.0% | |
| TTCGAATTCCGGTGAGATTG+TGG | - | chr7_4:54981490-54981509 | Msa1163630:intron | 45.0% | |
| ! | AGGGTGATTGGTGGTTATAG+TGG | - | chr7_4:54981677-54981696 | Msa1163630:intron | 45.0% |
| AGTGGTTCGATGACTGTTTC+GGG | - | chr7_4:54981695-54981714 | Msa1163630:intron | 45.0% | |
| ! | TGAGTATTGTAGAGATGCGG+TGG | - | chr7_4:54981733-54981752 | Msa1163630:intron | 45.0% |
| TGATGCCTTGAAGTCTGGAA+TGG | - | chr7_4:54982518-54982537 | Msa1163630:intron | 45.0% | |
| TCAAGCCATTCCAGACTTCA+AGG | + | chr7_4:54982526-54982545 | None:intergenic | 45.0% | |
| CATCGATCAAGATCCACAGA+AGG | + | chr7_4:54982697-54982716 | None:intergenic | 45.0% | |
| GGACCAGTAAAGCATAGCTT+TGG | + | chr7_4:54982740-54982759 | None:intergenic | 45.0% | |
| AAATCGACTGGCGAAAGGTA+AGG | + | chr7_4:54982790-54982809 | None:intergenic | 45.0% | |
| ATCTCAAATCGACTGGCGAA+AGG | + | chr7_4:54982795-54982814 | None:intergenic | 45.0% | |
| TGCTCTTTGTTAGGACCAGT+TGG | - | chr7_4:54982970-54982989 | Msa1163630:CDS | 45.0% | |
| GCAACCCATGTACATAGTAG+AGG | - | chr7_4:54983105-54983124 | Msa1163630:CDS | 45.0% | |
| AGCTACGACAACAACACCAA+AGG | + | chr7_4:54983309-54983328 | None:intergenic | 45.0% | |
| !! | TTTGGTGTTGTTGTCGTAGC+TGG | - | chr7_4:54983308-54983327 | Msa1163630:CDS | 45.0% |
| GATGCGCTGCACAATGAATT+TGG | + | chr7_4:54983572-54983591 | None:intergenic | 45.0% | |
| GATGAATCCTCCGTCGTTGA+CGG | + | chr7_4:54980972-54980991 | None:intergenic | 50.0% | |
| TTACACGGCATAGGTGGAAG+TGG | + | chr7_4:54981260-54981279 | None:intergenic | 50.0% | |
| CCGTAAACGTGAGGGTTACA+CGG | + | chr7_4:54981275-54981294 | None:intergenic | 50.0% | |
| CCGTGTAACCCTCACGTTTA+CGG | - | chr7_4:54981272-54981291 | Msa1163630:CDS | 50.0% | |
| ATGAGAACCAAACGGAACGG+CGG | + | chr7_4:54981312-54981331 | None:intergenic | 50.0% | |
| GCTTCCATGATTTCACCTCG+TGG | - | chr7_4:54981446-54981465 | Msa1163630:CDS | 50.0% | |
| !!! | GGATCGCGGCATTTGGTTTT+TGG | - | chr7_4:54981524-54981543 | Msa1163630:intron | 50.0% |
| !!! | GCGGCATTTGGTTTTTGGAG+CGG | - | chr7_4:54981529-54981548 | Msa1163630:intron | 50.0% |
| !!! | GCATTTGGTTTTTGGAGCGG+CGG | - | chr7_4:54981532-54981551 | Msa1163630:intron | 50.0% |
| !!! | CATTTGGTTTTTGGAGCGGC+GGG | - | chr7_4:54981533-54981552 | Msa1163630:intron | 50.0% |
| GTGTGTTGGGTTTGTGGAGA+GGG | - | chr7_4:54981640-54981659 | Msa1163630:intron | 50.0% | |
| TGTGTTGGGTTTGTGGAGAG+GGG | - | chr7_4:54981641-54981660 | Msa1163630:intron | 50.0% | |
| ! | GAGAGGGAGTTTAGGGTGAT+TGG | - | chr7_4:54981665-54981684 | Msa1163630:intron | 50.0% |
| ! | AGGGAGTTTAGGGTGATTGG+TGG | - | chr7_4:54981668-54981687 | Msa1163630:intron | 50.0% |
| GTGGTTCGATGACTGTTTCG+GGG | - | chr7_4:54981696-54981715 | Msa1163630:intron | 50.0% | |
| TGGTTCGATGACTGTTTCGG+GGG | - | chr7_4:54981697-54981716 | Msa1163630:intron | 50.0% | |
| TTGTAGAGATGCGGTGGTGA+TGG | - | chr7_4:54981739-54981758 | Msa1163630:intron | 50.0% | |
| TGTAGAGATGCGGTGGTGAT+GGG | - | chr7_4:54981740-54981759 | Msa1163630:intron | 50.0% | |
| TGGGATTGGAGGATGGTTTG+TGG | - | chr7_4:54981759-54981778 | Msa1163630:intron | 50.0% | |
| TTGGAGATGTGTGGGGTGAT+GGG | - | chr7_4:54981789-54981808 | Msa1163630:intron | 50.0% | |
| !! | GGGTGATGGGGAGAATGTTA+GGG | - | chr7_4:54981802-54981821 | Msa1163630:intron | 50.0% |
| ATGGGGAGAATGTTAGGGCT+GGG | - | chr7_4:54981807-54981826 | Msa1163630:intron | 50.0% | |
| AGGGCTGGGAAGATTGTTGT+TGG | - | chr7_4:54981821-54981840 | Msa1163630:intron | 50.0% | |
| ATTAAGTGGTTGGGCGGGAT+TGG | - | chr7_4:54982191-54982210 | Msa1163630:intron | 50.0% | |
| TTAAGTGGTTGGGCGGGATT+GGG | - | chr7_4:54982192-54982211 | Msa1163630:intron | 50.0% | |
| CAATTATGGAGACGAGGTGC+TGG | - | chr7_4:54982567-54982586 | Msa1163630:intron | 50.0% | |
| AACACCAAAGGCTGAACCAC+GGG | + | chr7_4:54983297-54983316 | None:intergenic | 50.0% | |
| CAACACCAAAGGCTGAACCA+CGG | + | chr7_4:54983298-54983317 | None:intergenic | 50.0% | |
| TTGACCACCAGGTTCCATGT+AGG | - | chr7_4:54983594-54983613 | Msa1163630:CDS | 50.0% | |
| TAAGCCACCTACATGGAACC+TGG | + | chr7_4:54983604-54983623 | None:intergenic | 50.0% | |
| TTTCCCTCCACCGTCAACGA+CGG | - | chr7_4:54980959-54980978 | Msa1163630:three_prime_UTR | 55.0% | |
| !! | GATGATGGTGGTGGTGAAGG+TGG | + | chr7_4:54981002-54981021 | None:intergenic | 55.0% |
| AGACGAGCGTGATGAGCGTA+AGG | + | chr7_4:54981080-54981099 | None:intergenic | 55.0% | |
| AACGTCGAAGAGATACGGCG+TGG | + | chr7_4:54981219-54981238 | None:intergenic | 55.0% | |
| TGGAAGTGGACACCACGCAA+CGG | + | chr7_4:54981246-54981265 | None:intergenic | 55.0% | |
| TGAGGGTTACACGGCATAGG+TGG | + | chr7_4:54981266-54981285 | None:intergenic | 55.0% | |
| ACGTGAGGGTTACACGGCAT+AGG | + | chr7_4:54981269-54981288 | None:intergenic | 55.0% | |
| TCCGGTGAGATTGTGGTTGC+CGG | - | chr7_4:54981497-54981516 | Msa1163630:intron | 55.0% | |
| TCCGGCAACCACAATCTCAC+CGG | + | chr7_4:54981501-54981520 | None:intergenic | 55.0% | |
| GTTACGACGTGGAGGAGGAT+CGG | - | chr7_4:54981579-54981598 | Msa1163630:intron | 55.0% | |
| ACACACCCCGCACGAAAACA+CGG | + | chr7_4:54981626-54981645 | None:intergenic | 55.0% | |
| ! | TGTTTTCGTGCGGGGTGTGT+TGG | - | chr7_4:54981626-54981645 | Msa1163630:intron | 55.0% |
| ! | GTTTTCGTGCGGGGTGTGTT+GGG | - | chr7_4:54981627-54981646 | Msa1163630:intron | 55.0% |
| GGTGTGTTGGGTTTGTGGAG+AGG | - | chr7_4:54981639-54981658 | Msa1163630:intron | 55.0% | |
| GTTTGTGGAGAGGGGAGAGA+GGG | - | chr7_4:54981649-54981668 | Msa1163630:intron | 55.0% | |
| AGAGGGGAGAGAGGGAGTTT+AGG | - | chr7_4:54981657-54981676 | Msa1163630:intron | 55.0% | |
| GAGGGGAGAGAGGGAGTTTA+GGG | - | chr7_4:54981658-54981677 | Msa1163630:intron | 55.0% | |
| !! | GACTGTTTCGGGGGTGTTTC+CGG | - | chr7_4:54981706-54981725 | Msa1163630:intron | 55.0% |
| !! | AGATGCGGTGGTGATGGGAT+TGG | - | chr7_4:54981745-54981764 | Msa1163630:intron | 55.0% |
| !! | GTGGTGATGGGATTGGAGGA+TGG | - | chr7_4:54981752-54981771 | Msa1163630:intron | 55.0% |
| ! | GATGGTTTGTGGCGTGAGGT+TGG | - | chr7_4:54981770-54981789 | Msa1163630:intron | 55.0% |
| GCGTGAGGTTGGAGATGTGT+GGG | - | chr7_4:54981781-54981800 | Msa1163630:intron | 55.0% | |
| CGTGAGGTTGGAGATGTGTG+GGG | - | chr7_4:54981782-54981801 | Msa1163630:intron | 55.0% | |
| GTTGGAGATGTGTGGGGTGA+TGG | - | chr7_4:54981788-54981807 | Msa1163630:intron | 55.0% | |
| TGGAGATGTGTGGGGTGATG+GGG | - | chr7_4:54981790-54981809 | Msa1163630:intron | 55.0% | |
| !! | GGGGTGATGGGGAGAATGTT+AGG | - | chr7_4:54981801-54981820 | Msa1163630:intron | 55.0% |
| GATGGGGAGAATGTTAGGGC+TGG | - | chr7_4:54981806-54981825 | Msa1163630:intron | 55.0% | |
| CGACTGGCGAAAGGTAAGGT+AGG | + | chr7_4:54982786-54982805 | None:intergenic | 55.0% | |
| ! | GAACCACGGGGAGGTCTTTT+TGG | + | chr7_4:54983284-54983303 | None:intergenic | 55.0% |
| ACACCAAAGGCTGAACCACG+GGG | + | chr7_4:54983296-54983315 | None:intergenic | 55.0% | |
| CAGCGCATCATTTGACCACC+AGG | - | chr7_4:54983583-54983602 | Msa1163630:CDS | 55.0% | |
| ACCACCAGGTTCCATGTAGG+TGG | - | chr7_4:54983597-54983616 | Msa1163630:CDS | 55.0% | |
| TGACGGTGGAGGGAAATCGC+CGG | + | chr7_4:54980955-54980974 | None:intergenic | 60.0% | |
| GAATCCTCCGTCGTTGACGG+TGG | + | chr7_4:54980969-54980988 | None:intergenic | 60.0% | |
| !! | ATGGTGGTGGTGAAGGTGGC+GGG | + | chr7_4:54980998-54981017 | None:intergenic | 60.0% |
| !! | GATGGTGGTGGTGAAGGTGG+CGG | + | chr7_4:54980999-54981018 | None:intergenic | 60.0% |
| TCGACGTTAACGCCGTTGCG+TGG | - | chr7_4:54981231-54981250 | Msa1163630:CDS | 60.0% | |
| AACTTCGCCGCCGTTCCGTT+TGG | - | chr7_4:54981302-54981321 | Msa1163630:CDS | 60.0% | |
| GGTGAGATTGTGGTTGCCGG+AGG | - | chr7_4:54981500-54981519 | Msa1163630:intron | 60.0% | |
| GAGATTGTGGTTGCCGGAGG+TGG | - | chr7_4:54981503-54981522 | Msa1163630:intron | 60.0% | |
| CAAATGCCGCGATCCACCTC+CGG | + | chr7_4:54981519-54981538 | None:intergenic | 60.0% | |
| !!! | TTTTTGGAGCGGCGGGATCG+AGG | - | chr7_4:54981540-54981559 | Msa1163630:intron | 60.0% |
| AGCGGCGGGATCGAGGATTA+GGG | - | chr7_4:54981547-54981566 | Msa1163630:intron | 60.0% | |
| GGAGGATCGGTGGGAGGAAA+TGG | - | chr7_4:54981592-54981611 | Msa1163630:intron | 60.0% | |
| ! | GCCGTTGCCGTGTTTTCGTG+CGG | - | chr7_4:54981616-54981635 | Msa1163630:intron | 60.0% |
| CCCGCACGAAAACACGGCAA+CGG | + | chr7_4:54981620-54981639 | None:intergenic | 60.0% | |
| ! | CCGTTGCCGTGTTTTCGTGC+GGG | - | chr7_4:54981617-54981636 | Msa1163630:intron | 60.0% |
| ! | CGTTGCCGTGTTTTCGTGCG+GGG | - | chr7_4:54981618-54981637 | Msa1163630:intron | 60.0% |
| TGCGGGGTGTGTTGGGTTTG+TGG | - | chr7_4:54981634-54981653 | Msa1163630:intron | 60.0% | |
| GGTTTGTGGAGAGGGGAGAG+AGG | - | chr7_4:54981648-54981667 | Msa1163630:intron | 60.0% | |
| !! | TGTTTCGGGGGTGTTTCCGG+TGG | - | chr7_4:54981709-54981728 | Msa1163630:intron | 60.0% |
| !! | TGCGGTGGTGATGGGATTGG+AGG | - | chr7_4:54981748-54981767 | Msa1163630:intron | 60.0% |
| ! | GGAGGATGGTTTGTGGCGTG+AGG | - | chr7_4:54981766-54981785 | Msa1163630:intron | 60.0% |
| GGCGTGAGGTTGGAGATGTG+TGG | - | chr7_4:54981780-54981799 | Msa1163630:intron | 60.0% | |
| GTGCCAAAAAGACCTCCCCG+TGG | - | chr7_4:54983278-54983297 | Msa1163630:CDS | 60.0% | |
| GCCACCTACATGGAACCTGG+TGG | + | chr7_4:54983601-54983620 | None:intergenic | 60.0% | |
| CCTCCGTCGTTGACGGTGGA+GGG | + | chr7_4:54980965-54980984 | None:intergenic | 65.0% | |
| TCCTCCGTCGTTGACGGTGG+AGG | + | chr7_4:54980966-54980985 | None:intergenic | 65.0% | |
| !! | TGGTGGTGGTGAAGGTGGCG+GGG | + | chr7_4:54980997-54981016 | None:intergenic | 65.0% |
| TGGTTGCCGGAGGTGGATCG+CGG | - | chr7_4:54981510-54981529 | Msa1163630:intron | 65.0% | |
| CGGAGGTGGATCGCGGCATT+TGG | - | chr7_4:54981517-54981536 | Msa1163630:intron | 65.0% | |
| GAGCGGCGGGATCGAGGATT+AGG | - | chr7_4:54981546-54981565 | Msa1163630:intron | 65.0% | |
| GGCGGGATCGAGGATTAGGG+CGG | - | chr7_4:54981550-54981569 | Msa1163630:intron | 65.0% | |
| GGGATCGAGGATTAGGGCGG+CGG | - | chr7_4:54981553-54981572 | Msa1163630:intron | 65.0% | |
| ! | GGAGCGTTACGACGTGGAGG+AGG | - | chr7_4:54981574-54981593 | Msa1163630:intron | 65.0% |
| ACGACGTGGAGGAGGATCGG+TGG | - | chr7_4:54981582-54981601 | Msa1163630:intron | 65.0% | |
| CGACGTGGAGGAGGATCGGT+GGG | - | chr7_4:54981583-54981602 | Msa1163630:intron | 65.0% | |
| CCAAAGGCTGAACCACGGGG+AGG | + | chr7_4:54983293-54983312 | None:intergenic | 65.0% | |
| CCTCCCCGTGGTTCAGCCTT+TGG | - | chr7_4:54983290-54983309 | Msa1163630:CDS | 65.0% | |
| CCCTCCACCGTCAACGACGG+AGG | - | chr7_4:54980962-54980981 | Msa1163630:three_prime_UTR | 70.0% | |
| ! | GGTGGTGGTGAAGGTGGCGG+GGG | + | chr7_4:54980996-54981015 | None:intergenic | 70.0% |
| ! | GGCGGAGCGTTACGACGTGG+AGG | - | chr7_4:54981571-54981590 | Msa1163630:intron | 70.0% |
| CGTGGAGGAGGATCGGTGGG+AGG | - | chr7_4:54981586-54981605 | Msa1163630:intron | 70.0% | |
| ! | GGCGGCGGAGCGTTACGACG+TGG | - | chr7_4:54981568-54981587 | Msa1163630:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 54980899 | 54983837 | 54980899 | ID=Msa1163630;Name=Msa1163630 |
| chr7_4 | mRNA | 54980899 | 54983837 | 54980899 | ID=Msa1163630-mRNA-1;Parent=Msa1163630;Name=Msa1163630-mRNA-1;_AED=0.01;_eAED=0.01;_QI=34|1|1|1|1|1|2|308|419 |
| chr7_4 | exon | 54980899 | 54981498 | 54980899 | ID=Msa1163630-mRNA-1:exon:16015;Parent=Msa1163630-mRNA-1 |
| chr7_4 | exon | 54982836 | 54983837 | 54982836 | ID=Msa1163630-mRNA-1:exon:16014;Parent=Msa1163630-mRNA-1 |
| chr7_4 | five_prime_UTR | 54983804 | 54983837 | 54983804 | ID=Msa1163630-mRNA-1:five_prime_utr;Parent=Msa1163630-mRNA-1 |
| chr7_4 | CDS | 54982836 | 54983803 | 54982836 | ID=Msa1163630-mRNA-1:cds;Parent=Msa1163630-mRNA-1 |
| chr7_4 | CDS | 54981207 | 54981498 | 54981207 | ID=Msa1163630-mRNA-1:cds;Parent=Msa1163630-mRNA-1 |
| chr7_4 | three_prime_UTR | 54980899 | 54981206 | 54980899 | ID=Msa1163630-mRNA-1:three_prime_utr;Parent=Msa1163630-mRNA-1 |
| Gene Sequence |
| Protein sequence |
