AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1295330


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1295330 MtrunA17_Chr8g0372781 94.720 322 2 1 1 322 1 307 0.0 618
Msa1295330 MtrunA17_Chr4g0012631 40.000 285 127 5 1 285 1 241 3.36e-60 193
Msa1295330 MtrunA17_Chr4g0063731 41.472 299 133 6 1 288 1 268 7.81e-56 182
Msa1295330 MtrunA17_Chr1g0149301 37.374 297 147 6 1 287 1 268 1.19e-49 166
Msa1295330 MtrunA17_Chr3g0137851 38.628 277 128 6 1 276 1 236 9.08e-49 164
Msa1295330 MtrunA17_Chr7g0231141 60.417 48 19 0 160 207 5 52 1.36e-14 68.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1295330 AT5G15330.1 59.347 337 95 6 1 317 1 315 1.95e-127 367
Msa1295330 AT5G15330.2 59.347 337 95 6 1 317 70 384 1.84e-125 364
Msa1295330 AT5G20150.1 40.559 286 113 8 1 282 1 233 5.78e-57 185
Msa1295330 AT2G45130.1 36.842 285 119 5 1 285 1 224 2.10e-52 173
Msa1295330 AT2G26660.1 37.785 307 145 6 1 294 1 274 1.77e-50 169

Find 74 sgRNAs with CRISPR-Local

Find 251 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAATAATCAGCTATGAAATT+TGG 0.123612 8_3:-53469417 Msa1295330:exon
TGTTGTACCTGCAAAGTTTA+AGG 0.146732 8_3:+53466624 None:intergenic
TGAAACGATTGAATTGAATT+TGG 0.175436 8_3:+53469494 None:intergenic
CAAATTTCATAGCTGATTAT+TGG 0.183094 8_3:+53469418 None:intergenic
AGAAATTTGTCTCTCCATTC+AGG 0.218893 8_3:+53469360 None:intergenic
AGAGTTTGTTATCCGATTTC+AGG 0.240013 8_3:-53469148 Msa1295330:intron
TGTAGTTGTTGATGTTGTTA+TGG 0.277721 8_3:+53469296 None:intergenic
CTTGTATATAATCGATGTTT+TGG 0.287506 8_3:-53465568 Msa1295330:three_prime_UTR
TACAGTTCCTTAAACTTTGC+AGG 0.292364 8_3:-53466631 Msa1295330:intron
AAATTTCATAGCTGATTATT+GGG 0.294520 8_3:+53469419 None:intergenic
CTCCTAACATCTTGCAGGCT+TGG 0.297375 8_3:-53469233 Msa1295330:CDS
AAAAGAGAAGAAAATGAAAA+TGG 0.299936 8_3:+53465872 None:intergenic
CGAAGAACGATTTGTGTAAA+AGG 0.308457 8_3:+53466160 None:intergenic
TTAGTCATTGTCCTCTTTAC+CGG 0.330019 8_3:+53465760 None:intergenic
AATAATCAGCTATGAAATTT+GGG 0.350016 8_3:-53469416 Msa1295330:exon
AGAAAATGAAAATGGATTGC+AGG 0.353750 8_3:+53465880 None:intergenic
ATTTCGCGATTATCAGATTA+GGG 0.353850 8_3:+53469450 None:intergenic
TGCTGCAATGAGAGCCATAA+AGG 0.361294 8_3:-53465924 Msa1295330:CDS
GGTGGTCTAGACTCGTGTTC+TGG 0.366418 8_3:+53466028 None:intergenic
GGAAAGATTCCAAAGAATCT+AGG 0.371885 8_3:+53469530 None:intergenic
CTGCAAGATGTTAGGAGAAA+AGG 0.378541 8_3:+53469239 None:intergenic
TCTTGCAGGCTTGGTTTCTT+CGG 0.381494 8_3:-53469224 Msa1295330:CDS
GATTTCGCGATTATCAGATT+AGG 0.392104 8_3:+53469449 None:intergenic
GTAGTTGTTGATGTTGTTAT+GGG 0.395138 8_3:+53469297 None:intergenic
ATTTCAGAAAGCTCTTGCTT+TGG 0.440741 8_3:-53469027 Msa1295330:intron
AGTTCAACCCTAAAAGCAAA+AGG 0.448519 8_3:+53465736 None:intergenic
AACCAAGCCTGCAAGATGTT+AGG 0.449746 8_3:+53469231 None:intergenic
GTGAAGAAATGATGGACATC+AGG 0.455962 8_3:-53466699 Msa1295330:CDS
CCAAGAGTTGACGATGTCTC+TGG 0.455990 8_3:+53465980 None:intergenic
GGAGTCAACTTGGTATTCAT+AGG 0.457122 8_3:+53468999 None:intergenic
GAAATTTGTCTCTCCATTCA+GGG 0.460458 8_3:+53469361 None:intergenic
TGAATTTAGTGAAGAAATGA+TGG 0.467079 8_3:-53466707 Msa1295330:CDS
CCAGAGACATCGTCAACTCT+TGG 0.470324 8_3:-53465980 Msa1295330:CDS
CTAGACTCGTGTTCTGGATG+AGG 0.479440 8_3:+53466034 None:intergenic
ATCAGATTAGGGTTGAAACT+TGG 0.480758 8_3:+53469461 None:intergenic
AAGAAGTATGATAAAAGAAC+CGG 0.483802 8_3:-53466199 Msa1295330:CDS
TGCAAGATGTTAGGAGAAAA+GGG 0.498200 8_3:+53469240 None:intergenic
TCCAGATACCTTGCAAAATG+AGG 0.505465 8_3:-53465789 Msa1295330:CDS
GCTGCAATGAGAGCCATAAA+GGG 0.508490 8_3:-53465923 Msa1295330:CDS
TGAATTACTTCTTCTTGTAG+AGG 0.517262 8_3:+53466064 None:intergenic
TGTTTGAGGAGTTTCTTCAA+TGG 0.517280 8_3:+53469327 None:intergenic
AAGGACTTGGTTACCATCCA+TGG 0.518555 8_3:-53466676 Msa1295330:CDS
TTTAGCAACCAAGACGAAGA+TGG 0.520909 8_3:-53465851 Msa1295330:CDS
TGAGGAAGACACCGGTAAAG+AGG 0.528351 8_3:-53465771 Msa1295330:CDS
TAGAAGAAACAATCCCTGAA+TGG 0.533632 8_3:-53469374 Msa1295330:CDS
TTATGGGTAAGTGATGTTTG+AGG 0.535067 8_3:+53469313 None:intergenic
AAGTGAAGATGAAGATTGAT+TGG 0.536397 8_3:+53469273 None:intergenic
GTATTCGTTGTGTTATCTAC+CGG 0.539124 8_3:+53466007 None:intergenic
GATGGACATCAGGAAGGACT+TGG 0.539190 8_3:-53466689 Msa1295330:CDS
CACCAGTACCATCTTCGTCT+TGG 0.542694 8_3:+53465843 None:intergenic
TGATTTCTACGTTGACAAAG+AGG 0.546511 8_3:-53469172 Msa1295330:CDS
AACCAAGACGAAGATGGTAC+TGG 0.568449 8_3:-53465845 Msa1295330:CDS
TCGATTATATACAAGTGAAG+AGG 0.578398 8_3:+53465576 None:intergenic
GTTCAACCCTAAAAGCAAAA+GGG 0.578591 8_3:+53465737 None:intergenic
AAGTACTACCGGAGTCAACT+TGG 0.585675 8_3:+53468989 None:intergenic
TTCGTTGTGTTATCTACCGG+TGG 0.585933 8_3:+53466010 None:intergenic
TTAGGAGCACCATCTCTCCA+TGG 0.586091 8_3:+53466659 None:intergenic
TCACTACTGAGCCTCTGACT+AGG 0.595158 8_3:-53466126 Msa1295330:CDS
TCATTTAGTTTCAACAAACA+AGG 0.596169 8_3:+53465705 None:intergenic
CGATTATATACAAGTGAAGA+GGG 0.598469 8_3:+53465577 None:intergenic
GGTTACCATCCATGGAGAGA+TGG 0.599706 8_3:-53466668 Msa1295330:CDS
GAGCACCATCTCTCCATGGA+TGG 0.602744 8_3:+53466663 None:intergenic
AAATGAAAATGGATTGCAGG+TGG 0.623783 8_3:+53465883 None:intergenic
AGAAATGATGGACATCAGGA+AGG 0.632825 8_3:-53466695 Msa1295330:CDS
AAGTATGATAAAAGAACCGG+CGG 0.635105 8_3:-53466196 Msa1295330:CDS
TATGAATACCAAGTTGACTC+CGG 0.635329 8_3:-53468997 Msa1295330:intron
TAGGCTAGTTCATGAATGTG+AGG 0.641042 8_3:-53466107 Msa1295330:CDS
GACATCGTCAACTCTTGGAG+AGG 0.650383 8_3:-53465975 Msa1295330:CDS
AGAACACGAGTCTAGACCAC+CGG 0.650727 8_3:-53466026 Msa1295330:CDS
AGGTAGTTGCAACAACCCGC+CGG 0.651351 8_3:+53466180 None:intergenic
TTGCAAAATGAGGAAGACAC+CGG 0.699666 8_3:-53465779 Msa1295330:CDS
TCATGAACTAGCCTAGTCAG+AGG 0.707862 8_3:+53466115 None:intergenic
AGTATGATAAAAGAACCGGC+GGG 0.751372 8_3:-53466195 Msa1295330:CDS
TGTAACTGCTGAAAACTCTG+CGG 0.777311 8_3:-53465819 Msa1295330:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATGTTTTTTTATTTGTTTA+TGG + chr8_3:53465574-53465593 None:intergenic 10.0%
!!! ATTGTCATTTTTTTTAAATA+GGG + chr8_3:53467451-53467470 None:intergenic 10.0%
!!! AATTGTCATTTTTTTTAAAT+AGG + chr8_3:53467452-53467471 None:intergenic 10.0%
!!! TTTAAAAAAAATGACAATTT+TGG - chr8_3:53467453-53467472 Msa1295330:intron 10.0%
!! AAACAAACAAAATCAAAAAA+GGG + chr8_3:53466014-53466033 None:intergenic 15.0%
!!! TTTTGAAACAGAAATTTATT+AGG - chr8_3:53466305-53466324 Msa1295330:intron 15.0%
!!! TTGTCATTTTTTTTAAATAG+GGG + chr8_3:53467450-53467469 None:intergenic 15.0%
!! AAAAAACTTTCAAAGTTAAT+AGG + chr8_3:53467790-53467809 None:intergenic 15.0%
!!! AAATATTTTTGATTAATGTC+TGG - chr8_3:53468283-53468302 Msa1295330:intron 15.0%
!!! GAATTTGGATTTTACATATT+TGG + chr8_3:53465618-53465637 None:intergenic 20.0%
!! AAATTTCATAGCTGATTATT+GGG + chr8_3:53465708-53465727 None:intergenic 20.0%
!! AATAATCAGCTATGAAATTT+GGG - chr8_3:53465708-53465727 Msa1295330:three_prime_UTR 20.0%
!! GAAACAAACAAAATCAAAAA+AGG + chr8_3:53466015-53466034 None:intergenic 20.0%
!! TTTCTATTGAATTACGTAAT+TGG - chr8_3:53466031-53466050 Msa1295330:CDS 20.0%
!!! ACTTTTTTTTTAGTAGATGT+AGG - chr8_3:53466254-53466273 Msa1295330:intron 20.0%
!!! ATTAGAGTATTAGTGTAAAT+TGG - chr8_3:53466333-53466352 Msa1295330:intron 20.0%
!!! TTTGTTGTTCATATTACAAA+TGG + chr8_3:53466548-53466567 None:intergenic 20.0%
!!! TTTTGATCAAAACTAACAAT+AGG + chr8_3:53466855-53466874 None:intergenic 20.0%
!! TAAATTAATCTAGTCAAAAC+AGG + chr8_3:53466987-53467006 None:intergenic 20.0%
!! AAAAGATATATAGTATCTGT+AGG + chr8_3:53467048-53467067 None:intergenic 20.0%
!!! TGTCATTTTTTTTAAATAGG+GGG + chr8_3:53467449-53467468 None:intergenic 20.0%
!!! CTTTTGTCATTTTTTTTCAT+AGG - chr8_3:53467627-53467646 Msa1295330:intron 20.0%
!! GAAAAATATAAATCTCACAT+CGG + chr8_3:53467727-53467746 None:intergenic 20.0%
!!! ATCATTTTATCCTATAGTTT+TGG - chr8_3:53467832-53467851 Msa1295330:intron 20.0%
!!! TCATTTTATCCTATAGTTTT+GGG - chr8_3:53467833-53467852 Msa1295330:intron 20.0%
!!! TTTTATTGGTTTAAGTTGAA+AGG - chr8_3:53468007-53468026 Msa1295330:intron 20.0%
!!! ATTTTATATTGATCTTTCAC+AGG + chr8_3:53468267-53468286 None:intergenic 20.0%
!! AAAAGAGAAGAAAATGAAAA+TGG + chr8_3:53469255-53469274 None:intergenic 20.0%
! AAAAACATTCCTAGATTCTT+TGG - chr8_3:53465585-53465604 Msa1295330:three_prime_UTR 25.0%
! TGAAACGATTGAATTGAATT+TGG + chr8_3:53465633-53465652 None:intergenic 25.0%
! CAAATTTCATAGCTGATTAT+TGG + chr8_3:53465709-53465728 None:intergenic 25.0%
! CAATAATCAGCTATGAAATT+TGG - chr8_3:53465707-53465726 Msa1295330:three_prime_UTR 25.0%
!! TTTTCAGAAAAACCTGAAAT+CGG + chr8_3:53465991-53466010 None:intergenic 25.0%
!!! TTATTTTCTGAAAGTACTAC+CGG + chr8_3:53466149-53466168 None:intergenic 25.0%
! TGAACTTTCATTAGATGATA+GGG + chr8_3:53466364-53466383 None:intergenic 25.0%
! GATTGTATAAAGTAGCAAAA+TGG + chr8_3:53466387-53466406 None:intergenic 25.0%
! AACAACAAATATACAACAGA+AGG - chr8_3:53466559-53466578 Msa1295330:intron 25.0%
! AATATACAACAGAAGGAAAA+TGG - chr8_3:53466566-53466585 Msa1295330:intron 25.0%
! TCTGATACAATAATATCAGA+AGG + chr8_3:53466626-53466645 None:intergenic 25.0%
!! GGTAACTTTTGATATATTCA+AGG + chr8_3:53466809-53466828 None:intergenic 25.0%
!! ATTTAAAACCTCAGATTGTT+TGG - chr8_3:53467002-53467021 Msa1295330:intron 25.0%
!! TTTAAAACCTCAGATTGTTT+GGG - chr8_3:53467003-53467022 Msa1295330:intron 25.0%
! TCTTCTAATCCATAAAACTT+TGG - chr8_3:53467375-53467394 Msa1295330:intron 25.0%
! ATCATATTTCCTTTATGTCA+GGG - chr8_3:53467567-53467586 Msa1295330:intron 25.0%
!!! TTGTCATTTTTTTTCATAGG+AGG - chr8_3:53467630-53467649 Msa1295330:intron 25.0%
!! TTTTTCTTTTTGTCATGATG+TGG - chr8_3:53467809-53467828 Msa1295330:intron 25.0%
! AAAATAAAGCCCAAAACTAT+AGG + chr8_3:53467845-53467864 None:intergenic 25.0%
!!! GGCTTTATTTTTTCTATCAT+TGG - chr8_3:53467854-53467873 Msa1295330:intron 25.0%
! TGTCATTCTTCTAATATGTT+AGG - chr8_3:53468041-53468060 Msa1295330:intron 25.0%
! AAAAATTCATTAAACGACAG+AGG + chr8_3:53468139-53468158 None:intergenic 25.0%
! CATATATCAAATTATGTGCT+AGG + chr8_3:53468200-53468219 None:intergenic 25.0%
!! TATAATGTTGTTTGTTGACT+TGG - chr8_3:53468321-53468340 Msa1295330:intron 25.0%
! TGAATTTAGTGAAGAAATGA+TGG - chr8_3:53468417-53468436 Msa1295330:intron 25.0%
!!! TTAAGGAACTGTAGTTTTTT+AGG + chr8_3:53468486-53468505 None:intergenic 25.0%
!! ATGACACTTTTACATTAAAG+TGG + chr8_3:53468748-53468767 None:intergenic 25.0%
!!! GTAAAAGTGTCATTTTTGTA+AGG - chr8_3:53468755-53468774 Msa1295330:intron 25.0%
!! AAGAAGTATGATAAAAGAAC+CGG - chr8_3:53468925-53468944 Msa1295330:intron 25.0%
!! TCATTTAGTTTCAACAAACA+AGG + chr8_3:53469422-53469441 None:intergenic 25.0%
!! CTTGTATATAATCGATGTTT+TGG - chr8_3:53469556-53469575 Msa1295330:five_prime_UTR 25.0%
ATTTCGCGATTATCAGATTA+GGG + chr8_3:53465677-53465696 None:intergenic 30.0%
GTAGTTGTTGATGTTGTTAT+GGG + chr8_3:53465830-53465849 None:intergenic 30.0%
TGTAGTTGTTGATGTTGTTA+TGG + chr8_3:53465831-53465850 None:intergenic 30.0%
AAGTGAAGATGAAGATTGAT+TGG + chr8_3:53465854-53465873 None:intergenic 30.0%
TTGTGTTTGTTTGCTCAATT+GGG - chr8_3:53466073-53466092 Msa1295330:CDS 30.0%
!! TCGATCAGAAGTTTTGTATT+TGG - chr8_3:53466221-53466240 Msa1295330:intron 30.0%
! AGATGTAGGCATATGTATTT+TGG - chr8_3:53466268-53466287 Msa1295330:intron 30.0%
GTGAACTTTCATTAGATGAT+AGG + chr8_3:53466365-53466384 None:intergenic 30.0%
TCAATTTCCAACTTCTCTAA+AGG + chr8_3:53466709-53466728 None:intergenic 30.0%
CACATCTAATCTTAATCAGA+CGG + chr8_3:53466733-53466752 None:intergenic 30.0%
!! CTAGGTTTTGATAAACATCT+TGG - chr8_3:53466910-53466929 Msa1295330:intron 30.0%
!! TATCTTTTTCATGCCTTCTT+CGG - chr8_3:53467060-53467079 Msa1295330:intron 30.0%
CAATTAGTGAGTACCAAATT+CGG - chr8_3:53467186-53467205 Msa1295330:intron 30.0%
AATTAGTGAGTACCAAATTC+GGG - chr8_3:53467187-53467206 Msa1295330:intron 30.0%
! AATGAGGGGTATATATTCTT+TGG + chr8_3:53467244-53467263 None:intergenic 30.0%
AAAGAATATATACCCCTCAT+TGG - chr8_3:53467243-53467262 Msa1295330:intron 30.0%
!!! ACCTTTTTTTCAACCAATGA+GGG + chr8_3:53467259-53467278 None:intergenic 30.0%
!!! AACCTTTTTTTCAACCAATG+AGG + chr8_3:53467260-53467279 None:intergenic 30.0%
! CATTGGTTGAAAAAAAGGTT+TGG - chr8_3:53467260-53467279 Msa1295330:intron 30.0%
GTATAGCATTAAAAAGCTAG+CGG + chr8_3:53467346-53467365 None:intergenic 30.0%
!! CTAGCTTTTTAATGCTATAC+TGG - chr8_3:53467346-53467365 Msa1295330:intron 30.0%
!!! TCGCAACTTTTTGAAACTTA+GGG + chr8_3:53467420-53467439 None:intergenic 30.0%
!!! ATCGCAACTTTTTGAAACTT+AGG + chr8_3:53467421-53467440 None:intergenic 30.0%
! GTTTCAAAAAGTTGCGATTT+TGG - chr8_3:53467423-53467442 Msa1295330:intron 30.0%
TTCTCAAAAAGTTGCGATTA+TGG + chr8_3:53467531-53467550 None:intergenic 30.0%
!! GCAACTTTTTGAGAAGATAA+GGG - chr8_3:53467536-53467555 Msa1295330:intron 30.0%
!! CAACTTTTTGAGAAGATAAG+GGG - chr8_3:53467537-53467556 Msa1295330:intron 30.0%
GATCATATTTCCTTTATGTC+AGG - chr8_3:53467566-53467585 Msa1295330:intron 30.0%
TCATATTTCCTTTATGTCAG+GGG - chr8_3:53467568-53467587 Msa1295330:intron 30.0%
AGCATATTTCCCTAAACATA+GGG - chr8_3:53467599-53467618 Msa1295330:intron 30.0%
! TGAATTGAAAGTTGCGATTT+TGG + chr8_3:53467656-53467675 None:intergenic 30.0%
TTTCAAAGTTAATAGGCAAC+TGG + chr8_3:53467783-53467802 None:intergenic 30.0%
! GACTATGCAATAGCTTTTAT+TGG - chr8_3:53467993-53468012 Msa1295330:intron 30.0%
! GTTGTTACTTCAATCTTCAA+TGG - chr8_3:53468090-53468109 Msa1295330:intron 30.0%
GAGGTTTATATATAGGTTTC+CGG + chr8_3:53468120-53468139 None:intergenic 30.0%
AACGACAGAGGTTTATATAT+AGG + chr8_3:53468127-53468146 None:intergenic 30.0%
GTATCTACACTTCATATTGA+AGG - chr8_3:53468566-53468585 Msa1295330:intron 30.0%
TATATTGCATATGTGTGATG+AGG - chr8_3:53468830-53468849 Msa1295330:intron 30.0%
TAACATATTTCCACTACAAC+AGG - chr8_3:53468886-53468905 Msa1295330:intron 30.0%
TTTAATTAGTCCTGTTGTAG+TGG + chr8_3:53468899-53468918 None:intergenic 30.0%
TGAATTACTTCTTCTTGTAG+AGG + chr8_3:53469063-53469082 None:intergenic 30.0%
!! AGAAAATGAAAATGGATTGC+AGG + chr8_3:53469247-53469266 None:intergenic 30.0%
CGATTATATACAAGTGAAGA+GGG + chr8_3:53469550-53469569 None:intergenic 30.0%
TCGATTATATACAAGTGAAG+AGG + chr8_3:53469551-53469570 None:intergenic 30.0%
GGAAAGATTCCAAAGAATCT+AGG + chr8_3:53465597-53465616 None:intergenic 35.0%
ATCAGATTAGGGTTGAAACT+TGG + chr8_3:53465666-53465685 None:intergenic 35.0%
GATTTCGCGATTATCAGATT+AGG + chr8_3:53465678-53465697 None:intergenic 35.0%
TAGAAGAAACAATCCCTGAA+TGG - chr8_3:53465750-53465769 Msa1295330:exon 35.0%
GAAATTTGTCTCTCCATTCA+GGG + chr8_3:53465766-53465785 None:intergenic 35.0%
AGAAATTTGTCTCTCCATTC+AGG + chr8_3:53465767-53465786 None:intergenic 35.0%
TGTTTGAGGAGTTTCTTCAA+TGG + chr8_3:53465800-53465819 None:intergenic 35.0%
TTATGGGTAAGTGATGTTTG+AGG + chr8_3:53465814-53465833 None:intergenic 35.0%
TGCAAGATGTTAGGAGAAAA+GGG + chr8_3:53465887-53465906 None:intergenic 35.0%
TGATTTCTACGTTGACAAAG+AGG - chr8_3:53465952-53465971 Msa1295330:CDS 35.0%
!! AGAGTTTGTTATCCGATTTC+AGG - chr8_3:53465976-53465995 Msa1295330:CDS 35.0%
CTTGTGTTTGTTTGCTCAAT+TGG - chr8_3:53466072-53466091 Msa1295330:CDS 35.0%
ATTTCAGAAAGCTCTTGCTT+TGG - chr8_3:53466097-53466116 Msa1295330:CDS 35.0%
! TATGAATACCAAGTTGACTC+CGG - chr8_3:53466127-53466146 Msa1295330:CDS 35.0%
GAGATGACTTGACAAAACAA+TGG - chr8_3:53466432-53466451 Msa1295330:intron 35.0%
ATATGAGATGTGTGACTGAA+TGG - chr8_3:53466757-53466776 Msa1295330:CDS 35.0%
ATCAAAAGTTACCAATACGC+TGG - chr8_3:53466816-53466835 Msa1295330:intron 35.0%
! ATCTTGGCTTGATCAAGTTT+AGG - chr8_3:53466926-53466945 Msa1295330:intron 35.0%
ATTCTCTAAATTGCCGAAGA+AGG + chr8_3:53467076-53467095 None:intergenic 35.0%
CGGCAATTTAGAGAATAATC+TGG - chr8_3:53467080-53467099 Msa1295330:intron 35.0%
CGAATTTGGTACTCACTAAT+TGG + chr8_3:53467188-53467207 None:intergenic 35.0%
!!! CCTTTTTTTCAACCAATGAG+GGG + chr8_3:53467258-53467277 None:intergenic 35.0%
CGGTGTCTTCATCTAATATA+TGG + chr8_3:53467326-53467345 None:intergenic 35.0%
! GCAGTTTAGCCAAAGTTTTA+TGG + chr8_3:53467387-53467406 None:intergenic 35.0%
!!! CGCAACTTTTTGAAACTTAG+GGG + chr8_3:53467419-53467438 None:intergenic 35.0%
!! CGCAACTTTTTGAGAAGATA+AGG - chr8_3:53467535-53467554 Msa1295330:intron 35.0%
CATATTTCCTTTATGTCAGG+GGG - chr8_3:53467569-53467588 Msa1295330:intron 35.0%
GAGCATATTTCCCTAAACAT+AGG - chr8_3:53467598-53467617 Msa1295330:intron 35.0%
GCATATTTCCCTAAACATAG+GGG - chr8_3:53467600-53467619 Msa1295330:intron 35.0%
CATATTTCCCTAAACATAGG+GGG - chr8_3:53467601-53467620 Msa1295330:intron 35.0%
CGTATGGGAATATAGAACTT+CGG + chr8_3:53467899-53467918 None:intergenic 35.0%
GTGAAGAATTCGATACGTAT+GGG + chr8_3:53467914-53467933 None:intergenic 35.0%
TGTGAAGAATTCGATACGTA+TGG + chr8_3:53467915-53467934 None:intergenic 35.0%
ACATAATTCGCAATTCGTCT+TGG + chr8_3:53467973-53467992 None:intergenic 35.0%
TTCAATCTTCAATGGTCTTC+CGG - chr8_3:53468098-53468117 Msa1295330:intron 35.0%
CAGATTCTGTATAACAGTGA+GGG + chr8_3:53468162-53468181 None:intergenic 35.0%
TACAGTTCCTTAAACTTTGC+AGG - chr8_3:53468493-53468512 Msa1295330:intron 35.0%
TGTTGTACCTGCAAAGTTTA+AGG + chr8_3:53468503-53468522 None:intergenic 35.0%
! ACACTTCATATTGAAGGTGT+AGG - chr8_3:53468572-53468591 Msa1295330:intron 35.0%
!! TGCTTTAGAGTATGACTATG+TGG - chr8_3:53468716-53468735 Msa1295330:intron 35.0%
AAGTATGATAAAAGAACCGG+CGG - chr8_3:53468928-53468947 Msa1295330:intron 35.0%
CGAAGAACGATTTGTGTAAA+AGG + chr8_3:53468967-53468986 None:intergenic 35.0%
GTATTCGTTGTGTTATCTAC+CGG + chr8_3:53469120-53469139 None:intergenic 35.0%
!! CGCTTTTTGTAAACCCTTTA+TGG + chr8_3:53469217-53469236 None:intergenic 35.0%
!! AAATGAAAATGGATTGCAGG+TGG + chr8_3:53469244-53469263 None:intergenic 35.0%
TTAGTCATTGTCCTCTTTAC+CGG + chr8_3:53469367-53469386 None:intergenic 35.0%
!! TGACTAACCCTTTTGCTTTT+AGG - chr8_3:53469380-53469399 Msa1295330:CDS 35.0%
!! GACTAACCCTTTTGCTTTTA+GGG - chr8_3:53469381-53469400 Msa1295330:CDS 35.0%
GTTCAACCCTAAAAGCAAAA+GGG + chr8_3:53469390-53469409 None:intergenic 35.0%
AGTTCAACCCTAAAAGCAAA+AGG + chr8_3:53469391-53469410 None:intergenic 35.0%
CTGCAAGATGTTAGGAGAAA+AGG + chr8_3:53465888-53465907 None:intergenic 40.0%
! CTTTTCTCCTAACATCTTGC+AGG - chr8_3:53465886-53465905 Msa1295330:CDS 40.0%
GGAGTCAACTTGGTATTCAT+AGG + chr8_3:53466128-53466147 None:intergenic 40.0%
GTTGGATGTCAGTGTGAAAT+TGG - chr8_3:53466461-53466480 Msa1295330:intron 40.0%
! AGTGGAACCTTTAGAGAAGT+TGG - chr8_3:53466699-53466718 Msa1295330:CDS 40.0%
AGTAATCACTACCAGCGTAT+TGG + chr8_3:53466830-53466849 None:intergenic 40.0%
! ATCTGGTTTGAGAATGAGCT+TGG - chr8_3:53467097-53467116 Msa1295330:intron 40.0%
AGTACCAAATTCGGGTACTT+AGG - chr8_3:53467195-53467214 Msa1295330:intron 40.0%
TACACCTAAGTACCCGAATT+TGG + chr8_3:53467202-53467221 None:intergenic 40.0%
ATTCGGGTACTTAGGTGTAT+TGG - chr8_3:53467203-53467222 Msa1295330:intron 40.0%
! CCCCTCATTGGTTGAAAAAA+AGG - chr8_3:53467255-53467274 Msa1295330:intron 40.0%
!!! TCAGCAATTTTGGGACGAAA+GGG + chr8_3:53467480-53467499 None:intergenic 40.0%
AAAGTGACCCCCTATGTTTA+GGG + chr8_3:53467611-53467630 None:intergenic 40.0%
AAAAGTGACCCCCTATGTTT+AGG + chr8_3:53467612-53467631 None:intergenic 40.0%
AGGCAACTGGTAAGCATAAA+GGG + chr8_3:53467770-53467789 None:intergenic 40.0%
TAGGCAACTGGTAAGCATAA+AGG + chr8_3:53467771-53467790 None:intergenic 40.0%
GCAGATTCTGTATAACAGTG+AGG + chr8_3:53468163-53468182 None:intergenic 40.0%
CTGTTATACAGAATCTGCCA+CGG - chr8_3:53468165-53468184 Msa1295330:intron 40.0%
!! GTTGTTTGTTGACTTGGAAC+AGG - chr8_3:53468327-53468346 Msa1295330:intron 40.0%
!! CAGAAGTGTACTTTTCACTC+TGG + chr8_3:53468393-53468412 None:intergenic 40.0%
!! GTGAAGAAATGATGGACATC+AGG - chr8_3:53468425-53468444 Msa1295330:intron 40.0%
!! AGAAATGATGGACATCAGGA+AGG - chr8_3:53468429-53468448 Msa1295330:intron 40.0%
ACATGTAACAGTGTTCGACA+TGG + chr8_3:53468625-53468644 None:intergenic 40.0%
ATGTCGAACACTGTTACATG+TGG - chr8_3:53468624-53468643 Msa1295330:intron 40.0%
AGTATGATAAAAGAACCGGC+GGG - chr8_3:53468929-53468948 Msa1295330:intron 40.0%
AGAGGCTCAGTAGTGAAAAA+AGG + chr8_3:53468994-53469013 None:intergenic 40.0%
! TAGGCTAGTTCATGAATGTG+AGG - chr8_3:53469017-53469036 Msa1295330:CDS 40.0%
TTTAGCAACCAAGACGAAGA+TGG - chr8_3:53469273-53469292 Msa1295330:CDS 40.0%
TGTAACTGCTGAAAACTCTG+CGG - chr8_3:53469305-53469324 Msa1295330:CDS 40.0%
TCCAGATACCTTGCAAAATG+AGG - chr8_3:53469335-53469354 Msa1295330:CDS 40.0%
!! TCCTCATTTTGCAAGGTATC+TGG + chr8_3:53469339-53469358 None:intergenic 40.0%
TTGCAAAATGAGGAAGACAC+CGG - chr8_3:53469345-53469364 Msa1295330:CDS 40.0%
AACCAAGCCTGCAAGATGTT+AGG + chr8_3:53465896-53465915 None:intergenic 45.0%
! TCTTGCAGGCTTGGTTTCTT+CGG - chr8_3:53465900-53465919 Msa1295330:CDS 45.0%
AAGTACTACCGGAGTCAACT+TGG + chr8_3:53466138-53466157 None:intergenic 45.0%
! ACTTCTGATCGAAGTGTCCA+GGG + chr8_3:53466213-53466232 None:intergenic 45.0%
! AACTTCTGATCGAAGTGTCC+AGG + chr8_3:53466214-53466233 None:intergenic 45.0%
ACAAAACAATGGACCCTCGT+TGG - chr8_3:53466443-53466462 Msa1295330:intron 45.0%
TTCACACTGACATCCAACGA+GGG + chr8_3:53466459-53466478 None:intergenic 45.0%
TTTCACACTGACATCCAACG+AGG + chr8_3:53466460-53466479 None:intergenic 45.0%
AGTCGACAATCACACTGTTG+CGG - chr8_3:53466598-53466617 Msa1295330:intron 45.0%
ACAGTCTACAGTCTGACTTC+AGG - chr8_3:53466675-53466694 Msa1295330:CDS 45.0%
TACAGTCTGACTTCAGGTAG+TGG - chr8_3:53466681-53466700 Msa1295330:CDS 45.0%
TGAATGGTTATCCCTACTGC+AGG - chr8_3:53466773-53466792 Msa1295330:CDS 45.0%
GAATGGTTATCCCTACTGCA+GGG - chr8_3:53466774-53466793 Msa1295330:CDS 45.0%
! CAATTTGAGTTAGCGCTGCT+AGG - chr8_3:53466892-53466911 Msa1295330:intron 45.0%
CAGAACTCCCAAACAATCTG+AGG + chr8_3:53467013-53467032 None:intergenic 45.0%
GAGCTTGGTTTCTCACAAAC+TGG - chr8_3:53467112-53467131 Msa1295330:intron 45.0%
GGTACTCACTAATTGGTACG+TGG + chr8_3:53467181-53467200 None:intergenic 45.0%
!!! CAGCAATTTTGGGACGAAAG+GGG + chr8_3:53467479-53467498 None:intergenic 45.0%
!!! CTCAGCAATTTTGGGACGAA+AGG + chr8_3:53467481-53467500 None:intergenic 45.0%
! GGCGTCTTCTCAGCAATTTT+GGG + chr8_3:53467489-53467508 None:intergenic 45.0%
! TGGCGTCTTCTCAGCAATTT+TGG + chr8_3:53467490-53467509 None:intergenic 45.0%
!!! GCGATTATGGCCCCTTTTTT+GGG + chr8_3:53467518-53467537 None:intergenic 45.0%
!!! TGCGATTATGGCCCCTTTTT+TGG + chr8_3:53467519-53467538 None:intergenic 45.0%
ATTCGTCTTGGTACGTGGTA+CGG + chr8_3:53467961-53467980 None:intergenic 45.0%
! AAGGACTTGGTTACCATCCA+TGG - chr8_3:53468448-53468467 Msa1295330:intron 45.0%
TAGGCAGTGTCTAACATGTG+TGG - chr8_3:53468591-53468610 Msa1295330:intron 45.0%
! TCATGAACTAGCCTAGTCAG+AGG + chr8_3:53469012-53469031 None:intergenic 45.0%
TTCGTTGTGTTATCTACCGG+TGG + chr8_3:53469117-53469136 None:intergenic 45.0%
TGCTGCAATGAGAGCCATAA+AGG - chr8_3:53469200-53469219 Msa1295330:CDS 45.0%
GCTGCAATGAGAGCCATAAA+GGG - chr8_3:53469201-53469220 Msa1295330:CDS 45.0%
AACCAAGACGAAGATGGTAC+TGG - chr8_3:53469279-53469298 Msa1295330:CDS 45.0%
! GGTGTCTTCCTCATTTTGCA+AGG + chr8_3:53469346-53469365 None:intergenic 45.0%
CTCCTAACATCTTGCAGGCT+TGG - chr8_3:53465891-53465910 Msa1295330:CDS 50.0%
TTAGTACGTGTCAGACACCC+TGG - chr8_3:53466193-53466212 Msa1295330:CDS 50.0%
ATCCCTACTGCAGGGAAACT+AGG - chr8_3:53466782-53466801 Msa1295330:intron 50.0%
GACCTAGTTTCCCTGCAGTA+GGG + chr8_3:53466787-53466806 None:intergenic 50.0%
GATTGTTTGGGAGTTCTGCC+TGG - chr8_3:53467015-53467034 Msa1295330:intron 50.0%
GTATCTGTAGGCGTGTTACC+AGG + chr8_3:53467036-53467055 None:intergenic 50.0%
CTTTCGACCCCCTGACATAA+AGG + chr8_3:53467579-53467598 None:intergenic 50.0%
TTCGTCTTGGTACGTGGTAC+GGG + chr8_3:53467960-53467979 None:intergenic 50.0%
TCGCAATTCGTCTTGGTACG+TGG + chr8_3:53467966-53467985 None:intergenic 50.0%
GATGGACATCAGGAAGGACT+TGG - chr8_3:53468435-53468454 Msa1295330:intron 50.0%
GGTTACCATCCATGGAGAGA+TGG - chr8_3:53468456-53468475 Msa1295330:intron 50.0%
!! TTAGGAGCACCATCTCTCCA+TGG + chr8_3:53468468-53468487 None:intergenic 50.0%
TCACTACTGAGCCTCTGACT+AGG - chr8_3:53468998-53469017 Msa1295330:CDS 50.0%
! CTAGACTCGTGTTCTGGATG+AGG + chr8_3:53469093-53469112 None:intergenic 50.0%
AGAACACGAGTCTAGACCAC+CGG - chr8_3:53469098-53469117 Msa1295330:intron 50.0%
CCAAGAGTTGACGATGTCTC+TGG + chr8_3:53469147-53469166 None:intergenic 50.0%
CCAGAGACATCGTCAACTCT+TGG - chr8_3:53469144-53469163 Msa1295330:intron 50.0%
GACATCGTCAACTCTTGGAG+AGG - chr8_3:53469149-53469168 Msa1295330:CDS 50.0%
CACCAGTACCATCTTCGTCT+TGG + chr8_3:53469284-53469303 None:intergenic 50.0%
TGAGGAAGACACCGGTAAAG+AGG - chr8_3:53469353-53469372 Msa1295330:CDS 50.0%
GGACCTAGTTTCCCTGCAGT+AGG + chr8_3:53466788-53466807 None:intergenic 55.0%
ACGCCACGCGTCCCAAAAAA+GGG - chr8_3:53467504-53467523 Msa1295330:intron 55.0%
ACGTGGTACGGGTACAGGTT+CGG + chr8_3:53467949-53467968 None:intergenic 55.0%
TTGGTACGTGGTACGGGTAC+AGG + chr8_3:53467954-53467973 None:intergenic 55.0%
GAGCACCATCTCTCCATGGA+TGG + chr8_3:53468464-53468483 None:intergenic 55.0%
AGGTAGTTGCAACAACCCGC+CGG + chr8_3:53468947-53468966 None:intergenic 55.0%
GGTGGTCTAGACTCGTGTTC+TGG + chr8_3:53469099-53469118 None:intergenic 55.0%
GACGCCACGCGTCCCAAAAA+AGG - chr8_3:53467503-53467522 Msa1295330:intron 60.0%
CGCCACGCGTCCCAAAAAAG+GGG - chr8_3:53467505-53467524 Msa1295330:intron 60.0%
GTGGTACGGGTACAGGTTCG+GGG + chr8_3:53467947-53467966 None:intergenic 60.0%
CGTGGTACGGGTACAGGTTC+GGG + chr8_3:53467948-53467967 None:intergenic 60.0%
GTGCTAGGTGAGCTATGCCG+TGG + chr8_3:53468185-53468204 None:intergenic 60.0%
!!! GGCCCCTTTTTTGGGACGCG+TGG + chr8_3:53467510-53467529 None:intergenic 65.0%
GGGTACAGGTTCGGGGTACG+CGG + chr8_3:53467940-53467959 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 53465567 53469579 53465567 ID=Msa1295330;Name=Msa1295330
chr8_3 mRNA 53465567 53469579 53465567 ID=Msa1295330-mRNA-1;Parent=Msa1295330;Name=Msa1295330-mRNA-1;_AED=0.09;_eAED=0.09;_QI=152|0.66|0.75|1|1|1|4|193|322
chr8_3 exon 53465567 53466238 53465567 ID=Msa1295330-mRNA-1:exon:15341;Parent=Msa1295330-mRNA-1
chr8_3 exon 53466632 53466797 53466632 ID=Msa1295330-mRNA-1:exon:15340;Parent=Msa1295330-mRNA-1
chr8_3 exon 53468998 53469042 53468998 ID=Msa1295330-mRNA-1:exon:15339;Parent=Msa1295330-mRNA-1
chr8_3 exon 53469149 53469579 53469149 ID=Msa1295330-mRNA-1:exon:15338;Parent=Msa1295330-mRNA-1
chr8_3 five_prime_UTR 53469428 53469579 53469428 ID=Msa1295330-mRNA-1:five_prime_utr;Parent=Msa1295330-mRNA-1
chr8_3 CDS 53469149 53469427 53469149 ID=Msa1295330-mRNA-1:cds;Parent=Msa1295330-mRNA-1
chr8_3 CDS 53468998 53469042 53468998 ID=Msa1295330-mRNA-1:cds;Parent=Msa1295330-mRNA-1
chr8_3 CDS 53466632 53466797 53466632 ID=Msa1295330-mRNA-1:cds;Parent=Msa1295330-mRNA-1
chr8_3 CDS 53465760 53466238 53465760 ID=Msa1295330-mRNA-1:cds;Parent=Msa1295330-mRNA-1
chr8_3 three_prime_UTR 53465567 53465759 53465567 ID=Msa1295330-mRNA-1:three_prime_utr;Parent=Msa1295330-mRNA-1
Gene Sequence

>Msa1295330

ATGAAATTTGGGAAAGAGTTCAAAACTCATCTAGAAGAAACAATCCCTGAATGGAGAGACAAATTTCTATGCTACAAACCATTGAAGAAACTCCTCAAACATCACTTACCCATAACAACATCAACAACTACACCAATCAATCTTCATCTTCACTTTCTTCAACAACCCTTTTCTCCTAACATCTTGCAGGCTTGGTTTCTTCGGATTCTCAATCAAGAGCTTGAAAAGTTCAATGATTTCTACGTTGACAAAGAGGAAGAGTTTGTTATCCGATTTCAGAAAGCTCTTGCTTTGGTCGAACCTATGAATACCAAGTTGACTCCGGAGCTGAAAGAGAGAATTGAGCGTCTTAAAGAAAAAAGCAGCCAGAGTGAAAAGTACACTTCTGATTGTGAATTTAGTGAAGAAATGATGGACATCAGGAAGGACTTGGTTACCATCCATGGAGAGATGGTGCTCCTAAAAAACTACAGTTCCTTAAACTTTGCAGGACTAATTAAAATTCTGAAGAAGTATGATAAAAGAACCGGCGGGTTGTTGCAACTACCTTTTACACAAATCGTTCTTCGACAGCCTTTTTTCACTACTGAGCCTCTGACTAGGCTAGTTCATGAATGTGAGGAAAATCTTGAGCTACTCTTTCCTCTACAAGAAGAAGTAATTCAATCAACTCCTCATCCAGAACACGAGTCTAGACCACCGGTAGATAACACAACGAATACTGTACCAGAGACATCGTCAACTCTTGGAGAGGAAACTGTGCATTTATATCGAAGCACTCTTGCTGCAATGAGAGCCATAAAGGGTTTACAAAAAGCGAGCTCCACCTGCAATCCATTTTCATTTTCTTCTCTTTTTAGCAACCAAGACGAAGATGGTACTGGTGCTGTAACTGCTGAAAACTCTGCGGCAAATTCTCCAGATACCTTGCAAAATGAGGAAGACACCGGTAAAGAGGACAATGACTAA

Protein sequence

>Msa1295330

MKFGKEFKTHLEETIPEWRDKFLCYKPLKKLLKHHLPITTSTTTPINLHLHFLQQPFSPNILQAWFLRILNQELEKFNDFYVDKEEEFVIRFQKALALVEPMNTKLTPELKERIERLKEKSSQSEKYTSDCEFSEEMMDIRKDLVTIHGEMVLLKNYSSLNFAGLIKILKKYDKRTGGLLQLPFTQIVLRQPFFTTEPLTRLVHECEENLELLFPLQEEVIQSTPHPEHESRPPVDNTTNTVPETSSTLGEETVHLYRSTLAAMRAIKGLQKASSTCNPFSFSSLFSNQDEDGTGAVTAENSAANSPDTLQNEEDTGKEDND*