Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0090040 | Msa1201550 | -0.800414 | 1.457584e-48 | -8.615850e-47 |
| Msa0624730 | Msa1201550 | 0.804242 | 2.373071e-49 | -8.615850e-47 |
| Msa0674220 | Msa1201550 | 0.813238 | 2.832705e-51 | -8.615850e-47 |
| Msa0792510 | Msa1201550 | 0.807487 | 4.935708e-50 | -8.615850e-47 |
| Msa0837990 | Msa1201550 | 0.834591 | 2.742883e-56 | -8.615850e-47 |
| Msa0842050 | Msa1201550 | 0.833407 | 5.429584e-56 | -8.615850e-47 |
| Msa0137120 | Msa1201550 | -0.815122 | 1.086848e-51 | -8.615850e-47 |
| Msa0227500 | Msa1201550 | 0.801351 | 9.382140e-49 | -8.615850e-47 |
| Msa0233190 | Msa1201550 | 0.825748 | 3.957032e-54 | -8.615850e-47 |
| Msa0371610 | Msa1201550 | 0.804210 | 2.410269e-49 | -8.615850e-47 |
| Msa0403340 | Msa1201550 | 0.820891 | 5.397337e-53 | -8.615850e-47 |
| Msa0413740 | Msa1201550 | 0.800951 | 1.132805e-48 | -8.615850e-47 |
| Msa1009020 | Msa1201550 | 0.805631 | 1.216027e-49 | -8.615850e-47 |
| Msa1018720 | Msa1201550 | 0.842026 | 3.325078e-58 | -8.615850e-47 |
| Msa1036350 | Msa1201550 | 0.826418 | 2.742991e-54 | -8.615850e-47 |
| Msa1040120 | Msa1201550 | 0.802102 | 6.578292e-49 | -8.615850e-47 |
| Msa1076630 | Msa1201550 | 0.834196 | 3.447688e-56 | -8.615850e-47 |
| Msa1083410 | Msa1201550 | 0.811309 | 7.467652e-51 | -8.615850e-47 |
| Msa1098560 | Msa1201550 | 0.805349 | 1.393484e-49 | -8.615850e-47 |
| Msa0275670 | Msa1201550 | 0.816801 | 4.585145e-52 | -8.615850e-47 |
| Msa0304740 | Msa1201550 | 0.825691 | 4.082437e-54 | -8.615850e-47 |
| Msa0311580 | Msa1201550 | 0.806280 | 8.882262e-50 | -8.615850e-47 |
| Msa0331590 | Msa1201550 | 0.813294 | 2.753690e-51 | -8.615850e-47 |
| Msa0357100 | Msa1201550 | 0.821120 | 4.779623e-53 | -8.615850e-47 |
| Msa1113210 | Msa1201550 | 0.825380 | 4.836853e-54 | -8.615850e-47 |
| Msa1133660 | Msa1201550 | 0.831209 | 1.900371e-55 | -8.615850e-47 |
| Msa1147200 | Msa1201550 | 0.802193 | 6.299947e-49 | -8.615850e-47 |
| Msa1198270 | Msa1201550 | 0.802639 | 5.099913e-49 | -8.615850e-47 |
| Msa1201550 | Msa1223460 | 0.822993 | 1.759810e-53 | -8.615850e-47 |
| Msa1201550 | Msa1254520 | 0.800201 | 1.610551e-48 | -8.615850e-47 |
| Msa1201550 | Msa1263660 | 0.818341 | 2.061529e-52 | -8.615850e-47 |
| Msa1201550 | Msa1294470 | 0.863109 | 3.146855e-64 | -8.615850e-47 |
| Msa1201550 | Msa1314090 | 0.808011 | 3.818606e-50 | -8.615850e-47 |
| Msa1201550 | Msa1373910 | 0.818250 | 2.162569e-52 | -8.615850e-47 |
| Msa1201550 | Msa1373950 | 0.808011 | 3.818044e-50 | -8.615850e-47 |
| Msa1201550 | Msa1397540 | 0.809070 | 2.268791e-50 | -8.615850e-47 |
| Msa1201550 | Msa1456810 | 0.811940 | 5.444149e-51 | -8.615850e-47 |
| Msa1201550 | Msa1465900 | 0.826578 | 2.512643e-54 | -8.615850e-47 |
| Msa0582110 | Msa1201550 | 0.810973 | 8.832499e-51 | -8.615850e-47 |
| Msa0596100 | Msa1201550 | 0.804668 | 1.934503e-49 | -8.615850e-47 |
| Msa0946120 | Msa1201550 | 0.818414 | 1.984378e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1201550 | MtrunA17_Chr3g0123421 | 76.316 | 38 | 9 | 0 | 4 | 41 | 64 | 101 | 3.38e-12 | 60.8 |
| Msa1201550 | MtrunA17_Chr3g0080431 | 73.684 | 38 | 10 | 0 | 4 | 41 | 63 | 100 | 1.25e-11 | 60.5 |
| Msa1201550 | MtrunA17_Chr3g0080421 | 68.421 | 38 | 12 | 0 | 4 | 41 | 64 | 101 | 3.67e-11 | 59.3 |
| Msa1201550 | MtrunA17_Chr8g0364441 | 65.789 | 38 | 13 | 0 | 4 | 41 | 103 | 140 | 6.41e-11 | 58.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 51 sgRNAs with CRISPR-Local
Find 147 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTAGCTATGCAAATACTTAC+AGG | 0.294928 | 8_1:-54713578 | None:intergenic |
| AGCCAGTTGGAGTGATGCTT+TGG | 0.346598 | 8_1:-54710912 | None:intergenic |
| GGTACCCTCAACACATTGTT+TGG | 0.377046 | 8_1:+54711474 | Msa1201550:CDS |
| AATAACAACTGATGAAGTTT+CGG | 0.382968 | 8_1:-54713333 | None:intergenic |
| TAGAGAAATAACATGGAGTT+TGG | 0.390945 | 8_1:+54713598 | Msa1201550:three_prime_UTR |
| TTTAGCATGAGATTACTTCT+TGG | 0.392715 | 8_1:+54713450 | Msa1201550:three_prime_UTR |
| AAAGAAATCAGTACCTCTTC+CGG | 0.396980 | 8_1:-54711803 | None:intergenic |
| ATGGATATTAGCAGAGCTTT+CGG | 0.425234 | 8_1:+54711763 | Msa1201550:CDS |
| CTAATGTGTTCATACATTAG+AGG | 0.430012 | 8_1:+54711063 | Msa1201550:five_prime_UTR |
| AACCAAAGCATCACTCCAAC+TGG | 0.445315 | 8_1:+54710910 | Msa1201550:five_prime_UTR |
| GGTTTGTGACCGGATGTCTA+TGG | 0.448159 | 8_1:+54711744 | Msa1201550:CDS |
| AGCTTTGACATCTATATTGT+GGG | 0.448584 | 8_1:+54711432 | Msa1201550:CDS |
| AATTGAGGTCTTACCGGGAC+TGG | 0.449445 | 8_1:-54711510 | None:intergenic |
| ATACTCCGCTTTGCAGAGTT+CGG | 0.457488 | 8_1:-54711717 | None:intergenic |
| TTGATCTTAGCACAAATCAA+TGG | 0.462328 | 8_1:+54713419 | Msa1201550:three_prime_UTR |
| CAATGTGTTGAGGGTACCAT+AGG | 0.478200 | 8_1:-54711469 | None:intergenic |
| TAGCTTTGACATCTATATTG+TGG | 0.480121 | 8_1:+54711431 | Msa1201550:CDS |
| ACATATAGTATGTAGCTTGA+AGG | 0.481685 | 8_1:-54713379 | None:intergenic |
| TGCTAATATCCATAGACATC+CGG | 0.487696 | 8_1:-54711753 | None:intergenic |
| GGATATAATATTGATCCCTA+TGG | 0.491243 | 8_1:+54711453 | Msa1201550:CDS |
| GCAGGATCCTCAATTATGCT+TGG | 0.498328 | 8_1:+54711406 | Msa1201550:intron |
| TAATGTGTTCATACATTAGA+GGG | 0.504201 | 8_1:+54711064 | Msa1201550:five_prime_UTR |
| AGAATTAGAGACTATGATGT+TGG | 0.511635 | 8_1:-54711015 | None:intergenic |
| AAGTTTAAGTATTAAAGTAT+CGG | 0.523951 | 8_1:+54713683 | Msa1201550:three_prime_UTR |
| AAGTGCCTATGCTGATTATG+TGG | 0.527720 | 8_1:+54711305 | Msa1201550:CDS |
| AGTTTCTCAAGGTTTATCTA+CGG | 0.536455 | 8_1:-54713309 | None:intergenic |
| AGCTGCAGATACACCGGAAG+AGG | 0.539823 | 8_1:+54711790 | Msa1201550:CDS |
| AGCTATGCCAAGCATAATTG+AGG | 0.553176 | 8_1:-54711413 | None:intergenic |
| GGTGAATGGTGACAGAAGAA+AGG | 0.553959 | 8_1:-54710994 | None:intergenic |
| CCAACTGGCTATAAAACAAA+GGG | 0.563120 | 8_1:+54710925 | Msa1201550:five_prime_UTR |
| AAGACCAAACAATGTGTTGA+GGG | 0.565051 | 8_1:-54711478 | None:intergenic |
| TCTGCAAAGCGGAGTATCCA+TGG | 0.565751 | 8_1:+54711723 | Msa1201550:CDS |
| GAGTATCCATGGTTTGTGAC+CGG | 0.565764 | 8_1:+54711734 | Msa1201550:CDS |
| TTAAAAGCAGCACATGACAT+TGG | 0.573988 | 8_1:+54713279 | Msa1201550:CDS |
| GAAGTTTCGGAAGTTTCTCA+AGG | 0.575667 | 8_1:-54713320 | None:intergenic |
| TTAGAGGGAATTAATGAATG+AGG | 0.580115 | 8_1:+54711079 | Msa1201550:exon |
| ATAAAACAAAGGGCCTCTTG+TGG | 0.581897 | 8_1:+54710935 | Msa1201550:five_prime_UTR |
| TCCAACTGGCTATAAAACAA+AGG | 0.587677 | 8_1:+54710924 | Msa1201550:five_prime_UTR |
| AGACATCCGGTCACAAACCA+TGG | 0.592177 | 8_1:-54711740 | None:intergenic |
| GAGACTATGATGTTGGTGAA+TGG | 0.611671 | 8_1:-54711008 | None:intergenic |
| TCTTAGCACAAATCCAGTCC+CGG | 0.622585 | 8_1:+54711497 | Msa1201550:CDS |
| AATGTGTTGAGGGTACCATA+GGG | 0.623878 | 8_1:-54711468 | None:intergenic |
| CCGCTTTGCAGAGTTCGGCA+AGG | 0.624173 | 8_1:-54711712 | None:intergenic |
| GGTCATAGCTGCAGATACAC+CGG | 0.626864 | 8_1:+54711784 | Msa1201550:CDS |
| AGTATGTAGCTTGAAGGCAA+AGG | 0.638885 | 8_1:-54713373 | None:intergenic |
| CTTACCCACATAATCAGCAT+AGG | 0.642322 | 8_1:-54711310 | None:intergenic |
| TTAGCACAAATCAATGGACA+TGG | 0.656205 | 8_1:+54713425 | Msa1201550:three_prime_UTR |
| TAAGACCAAACAATGTGTTG+AGG | 0.664975 | 8_1:-54711479 | None:intergenic |
| CCTTGCCGAACTCTGCAAAG+CGG | 0.678058 | 8_1:+54711712 | Msa1201550:CDS |
| AGTGCCTATGCTGATTATGT+GGG | 0.682994 | 8_1:+54711306 | Msa1201550:CDS |
| GCATAGCTAGAGAAATAACA+TGG | 0.684263 | 8_1:+54713591 | Msa1201550:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATATGAAATATTTATTTTC+AGG | + | chr8_1:54711245-54711264 | Msa1201550:intron | 10.0% |
| !! | ATTATAGATTAGTATAAAAT+AGG | - | chr8_1:54711376-54711395 | None:intergenic | 10.0% |
| !!! | TATTGTTTAACTTAATTTAA+AGG | - | chr8_1:54711870-54711889 | None:intergenic | 10.0% |
| !!! | AATAACTTTTTATTGATAAA+TGG | + | chr8_1:54712340-54712359 | Msa1201550:intron | 10.0% |
| !!! | AAATATTTATTTTCAGGTAA+AGG | + | chr8_1:54711251-54711270 | Msa1201550:intron | 15.0% |
| !!! | TTTTAATATTACAAAAAGTG+AGG | + | chr8_1:54711275-54711294 | Msa1201550:CDS | 15.0% |
| !!! | TCTATAATTTTTTTTTTTGC+AGG | + | chr8_1:54711388-54711407 | Msa1201550:intron | 15.0% |
| !! | TGAATATAAAGATAAAAGTA+AGG | - | chr8_1:54711844-54711863 | None:intergenic | 15.0% |
| !!! | AAATACAATTCACTTTTATA+TGG | + | chr8_1:54711890-54711909 | Msa1201550:intron | 15.0% |
| !!! | ATTTCATGGATAAATTTTTT+TGG | + | chr8_1:54712836-54712855 | Msa1201550:intron | 15.0% |
| !! | AATCAAATATTGGTATATTT+AGG | + | chr8_1:54712897-54712916 | Msa1201550:intron | 15.0% |
| !! | ATCAAATATTGGTATATTTA+GGG | + | chr8_1:54712898-54712917 | Msa1201550:intron | 15.0% |
| !!! | ACCAATTTTGATATAGAATA+AGG | + | chr8_1:54711117-54711136 | Msa1201550:intron | 20.0% |
| !!! | CCAATTTTGATATAGAATAA+GGG | + | chr8_1:54711118-54711137 | Msa1201550:intron | 20.0% |
| !! | CATAAAATATCAAATTCTGA+TGG | + | chr8_1:54711551-54711570 | Msa1201550:intron | 20.0% |
| !!! | ATGTTTTAAACAAAAGGTTT+AGG | - | chr8_1:54711595-54711614 | None:intergenic | 20.0% |
| !!! | AAACCTTTTGTTTAAAACAT+TGG | + | chr8_1:54711595-54711614 | Msa1201550:intron | 20.0% |
| !! | ATTTGCGCTAAAAAATATTT+GGG | + | chr8_1:54712136-54712155 | Msa1201550:intron | 20.0% |
| !!! | GTTTTATAATATTGTTACCA+TGG | - | chr8_1:54712219-54712238 | None:intergenic | 20.0% |
| !! | TCATATTACAAAAATACTGT+TGG | + | chr8_1:54712394-54712413 | Msa1201550:intron | 20.0% |
| !! | AAACAATTATCAAATTACAC+TGG | + | chr8_1:54712473-54712492 | Msa1201550:intron | 20.0% |
| !!! | TGAAGTATTTGTGTTAAAAA+TGG | - | chr8_1:54712622-54712641 | None:intergenic | 20.0% |
| !! | ACATTAAATGTTAATTTCGT+GGG | - | chr8_1:54712673-54712692 | None:intergenic | 20.0% |
| !! | AACATTAAATGTTAATTTCG+TGG | - | chr8_1:54712674-54712693 | None:intergenic | 20.0% |
| !! | TAAAATATTTCCTAGATTTC+TGG | - | chr8_1:54712867-54712886 | None:intergenic | 20.0% |
| !!! | AAATCTAGGAAATATTTTAG+AGG | + | chr8_1:54712868-54712887 | Msa1201550:intron | 20.0% |
| !!! | AATCTAGGAAATATTTTAGA+GGG | + | chr8_1:54712869-54712888 | Msa1201550:intron | 20.0% |
| !! | ACTTACAATTATTTGTACTT+TGG | + | chr8_1:54713059-54713078 | Msa1201550:intron | 20.0% |
| !! | CTTACAATTATTTGTACTTT+GGG | + | chr8_1:54713060-54713079 | Msa1201550:intron | 20.0% |
| ! | TAATGTGTTCATACATTAGA+GGG | + | chr8_1:54711064-54711083 | Msa1201550:five_prime_UTR | 25.0% |
| ! | CCCTTATTCTATATCAAAAT+TGG | - | chr8_1:54711121-54711140 | None:intergenic | 25.0% |
| ! | TTACTTATTTCACGTTAATG+TGG | - | chr8_1:54711145-54711164 | None:intergenic | 25.0% |
| ! | TCATGCATAGTAAAATCTTA+TGG | - | chr8_1:54711175-54711194 | None:intergenic | 25.0% |
| !!! | TCACCAATGTTTTAAACAAA+AGG | - | chr8_1:54711601-54711620 | None:intergenic | 25.0% |
| !!! | AAAAAAAAGTATCACACTGA+TGG | - | chr8_1:54711646-54711665 | None:intergenic | 25.0% |
| !!! | ATTTGTTGTTTGAATTTTGC+AGG | + | chr8_1:54711683-54711702 | Msa1201550:intron | 25.0% |
| ! | TAAAGATAAAAGTAAGGCAA+TGG | - | chr8_1:54711838-54711857 | None:intergenic | 25.0% |
| ! | GCTGATCATGTATATATAAT+TGG | + | chr8_1:54712007-54712026 | Msa1201550:intron | 25.0% |
| ! | ATGTTACCTAAAATTGATTG+TGG | + | chr8_1:54712097-54712116 | Msa1201550:intron | 25.0% |
| !! | TAACTACCACAATCAATTTT+AGG | - | chr8_1:54712106-54712125 | None:intergenic | 25.0% |
| ! | AAATTGATTGTGGTAGTTAT+TGG | + | chr8_1:54712107-54712126 | Msa1201550:intron | 25.0% |
| ! | AATTGATTGTGGTAGTTATT+GGG | + | chr8_1:54712108-54712127 | Msa1201550:intron | 25.0% |
| ! | CATTTGCGCTAAAAAATATT+TGG | + | chr8_1:54712135-54712154 | Msa1201550:intron | 25.0% |
| ! | TTTGCGCTAAAAAATATTTG+GGG | + | chr8_1:54712137-54712156 | Msa1201550:intron | 25.0% |
| ! | ATGGATACAAAACTTATCAT+TGG | + | chr8_1:54712359-54712378 | Msa1201550:intron | 25.0% |
| ! | TTGTTTAATTAAAGTGCGTA+AGG | - | chr8_1:54712459-54712478 | None:intergenic | 25.0% |
| ! | GTTATGAAATGTTAACAGAT+AGG | + | chr8_1:54712691-54712710 | Msa1201550:intron | 25.0% |
| ! | AAATGTTAACAGATAGGAAA+AGG | + | chr8_1:54712697-54712716 | Msa1201550:intron | 25.0% |
| !!! | TCATGGATAAATTTTTTTGG+AGG | + | chr8_1:54712839-54712858 | Msa1201550:intron | 25.0% |
| !!! | CATGGATAAATTTTTTTGGA+GGG | + | chr8_1:54712840-54712859 | Msa1201550:intron | 25.0% |
| !!! | ATCAATTTTAGTGTTCGTAA+TGG | + | chr8_1:54713113-54713132 | Msa1201550:intron | 25.0% |
| !!! | TCAATTTTAGTGTTCGTAAT+GGG | + | chr8_1:54713114-54713133 | Msa1201550:intron | 25.0% |
| ! | AATAACAACTGATGAAGTTT+CGG | - | chr8_1:54713336-54713355 | None:intergenic | 25.0% |
| TGATGATAAAAATCCACAAG+AGG | - | chr8_1:54710951-54710970 | None:intergenic | 30.0% | |
| AGAATTAGAGACTATGATGT+TGG | - | chr8_1:54711018-54711037 | None:intergenic | 30.0% | |
| ! | TCTTTTTCTCTTCTCTTTTC+TGG | + | chr8_1:54711035-54711054 | Msa1201550:five_prime_UTR | 30.0% |
| CTAATGTGTTCATACATTAG+AGG | + | chr8_1:54711063-54711082 | Msa1201550:five_prime_UTR | 30.0% | |
| TTAGAGGGAATTAATGAATG+AGG | + | chr8_1:54711079-54711098 | Msa1201550:exon | 30.0% | |
| ! | AGATTTTACTATGCATGATC+TGG | + | chr8_1:54711177-54711196 | Msa1201550:intron | 30.0% |
| TAGTAGAAGACATCAAAGAA+GGG | - | chr8_1:54711353-54711372 | None:intergenic | 30.0% | |
| !! | TAGCTTTGACATCTATATTG+TGG | + | chr8_1:54711431-54711450 | Msa1201550:CDS | 30.0% |
| ! | AGCTTTGACATCTATATTGT+GGG | + | chr8_1:54711432-54711451 | Msa1201550:CDS | 30.0% |
| GGATATAATATTGATCCCTA+TGG | + | chr8_1:54711453-54711472 | Msa1201550:CDS | 30.0% | |
| AATATCAAATTCTGATGGCA+TGG | + | chr8_1:54711556-54711575 | Msa1201550:intron | 30.0% | |
| !!! | TGTTATTTTCTCTTTCACCA+TGG | + | chr8_1:54712199-54712218 | Msa1201550:intron | 30.0% |
| ! | TGTAACATGGACTAATTTCA+TGG | + | chr8_1:54712822-54712841 | Msa1201550:intron | 30.0% |
| GAGGGACTAAAATCAAATAT+TGG | + | chr8_1:54712887-54712906 | Msa1201550:intron | 30.0% | |
| TATGTAAAACCCCCAATAAA+AGG | + | chr8_1:54713162-54713181 | Msa1201550:intron | 30.0% | |
| ! | TCAGTTTAGCACCTTTTATT+GGG | - | chr8_1:54713176-54713195 | None:intergenic | 30.0% |
| ! | TTCAGTTTAGCACCTTTTAT+TGG | - | chr8_1:54713177-54713196 | None:intergenic | 30.0% |
| !! | TAAAAGGTGCTAAACTGAAA+TGG | + | chr8_1:54713178-54713197 | Msa1201550:intron | 30.0% |
| AGTTTCTCAAGGTTTATCTA+CGG | - | chr8_1:54713312-54713331 | None:intergenic | 30.0% | |
| ACATATAGTATGTAGCTTGA+AGG | - | chr8_1:54713382-54713401 | None:intergenic | 30.0% | |
| TTGATCTTAGCACAAATCAA+TGG | + | chr8_1:54713419-54713438 | Msa1201550:three_prime_UTR | 30.0% | |
| TTTAGCATGAGATTACTTCT+TGG | + | chr8_1:54713450-54713469 | Msa1201550:three_prime_UTR | 30.0% | |
| TAGAGAAATAACATGGAGTT+TGG | + | chr8_1:54713598-54713617 | Msa1201550:three_prime_UTR | 30.0% | |
| TCCAACTGGCTATAAAACAA+AGG | + | chr8_1:54710924-54710943 | Msa1201550:five_prime_UTR | 35.0% | |
| CCAACTGGCTATAAAACAAA+GGG | + | chr8_1:54710925-54710944 | Msa1201550:five_prime_UTR | 35.0% | |
| GTAGTAGAAGACATCAAAGA+AGG | - | chr8_1:54711354-54711373 | None:intergenic | 35.0% | |
| AAGACCAAACAATGTGTTGA+GGG | - | chr8_1:54711481-54711500 | None:intergenic | 35.0% | |
| TAAGACCAAACAATGTGTTG+AGG | - | chr8_1:54711482-54711501 | None:intergenic | 35.0% | |
| TTGTAACACAACCTCAATTG+AGG | - | chr8_1:54711528-54711547 | None:intergenic | 35.0% | |
| TGCTAATATCCATAGACATC+CGG | - | chr8_1:54711756-54711775 | None:intergenic | 35.0% | |
| ATGGATATTAGCAGAGCTTT+CGG | + | chr8_1:54711763-54711782 | Msa1201550:CDS | 35.0% | |
| AAAGAAATCAGTACCTCTTC+CGG | - | chr8_1:54711806-54711825 | None:intergenic | 35.0% | |
| AAAGGAAGAATACTGATCCA+AGG | + | chr8_1:54712715-54712734 | Msa1201550:intron | 35.0% | |
| AAGGAAGAATACTGATCCAA+GGG | + | chr8_1:54712716-54712735 | Msa1201550:intron | 35.0% | |
| ! | AGTTTAGCACCTTTTATTGG+GGG | - | chr8_1:54713174-54713193 | None:intergenic | 35.0% |
| ! | CAGTTTAGCACCTTTTATTG+GGG | - | chr8_1:54713175-54713194 | None:intergenic | 35.0% |
| !!! | ATGTCATGTGCTGCTTTTAA+GGG | - | chr8_1:54713279-54713298 | None:intergenic | 35.0% |
| !!! | AATGTCATGTGCTGCTTTTA+AGG | - | chr8_1:54713280-54713299 | None:intergenic | 35.0% |
| TTAAAAGCAGCACATGACAT+TGG | + | chr8_1:54713279-54713298 | Msa1201550:CDS | 35.0% | |
| TTAGCACAAATCAATGGACA+TGG | + | chr8_1:54713425-54713444 | Msa1201550:three_prime_UTR | 35.0% | |
| CTAGCTATGCAAATACTTAC+AGG | - | chr8_1:54713581-54713600 | None:intergenic | 35.0% | |
| GCATAGCTAGAGAAATAACA+TGG | + | chr8_1:54713591-54713610 | Msa1201550:three_prime_UTR | 35.0% | |
| !!! | CCCTTTGTTTTATAGCCAGT+TGG | - | chr8_1:54710928-54710947 | None:intergenic | 40.0% |
| ATAAAACAAAGGGCCTCTTG+TGG | + | chr8_1:54710935-54710954 | Msa1201550:five_prime_UTR | 40.0% | |
| ! | TGACAGAAGAAAGGTTTTGC+AGG | - | chr8_1:54710988-54711007 | None:intergenic | 40.0% |
| ! | GAGACTATGATGTTGGTGAA+TGG | - | chr8_1:54711011-54711030 | None:intergenic | 40.0% |
| ! | AAGTGCCTATGCTGATTATG+TGG | + | chr8_1:54711305-54711324 | Msa1201550:CDS | 40.0% |
| ! | AGTGCCTATGCTGATTATGT+GGG | + | chr8_1:54711306-54711325 | Msa1201550:CDS | 40.0% |
| CTTACCCACATAATCAGCAT+AGG | - | chr8_1:54711313-54711332 | None:intergenic | 40.0% | |
| AGCTATGCCAAGCATAATTG+AGG | - | chr8_1:54711416-54711435 | None:intergenic | 40.0% | |
| !! | AATGTGTTGAGGGTACCATA+GGG | - | chr8_1:54711471-54711490 | None:intergenic | 40.0% |
| AACCTCAATTGAGGTCTTAC+CGG | - | chr8_1:54711519-54711538 | None:intergenic | 40.0% | |
| AGGAAGAATACTGATCCAAG+GGG | + | chr8_1:54712717-54712736 | Msa1201550:intron | 40.0% | |
| AGCTGTTCCAAAACCGAAAA+GGG | - | chr8_1:54712752-54712771 | None:intergenic | 40.0% | |
| AATGGGTGCATGTTTCTTTG+CGG | + | chr8_1:54713131-54713150 | Msa1201550:intron | 40.0% | |
| ! | AGCTGATGTTATTCCCCTTT+TGG | + | chr8_1:54713207-54713226 | Msa1201550:intron | 40.0% |
| ! | GCTGATGTTATTCCCCTTTT+GGG | + | chr8_1:54713208-54713227 | Msa1201550:intron | 40.0% |
| CTCAAAATCAGACCCAAAAG+GGG | - | chr8_1:54713223-54713242 | None:intergenic | 40.0% | |
| GCTCAAAATCAGACCCAAAA+GGG | - | chr8_1:54713224-54713243 | None:intergenic | 40.0% | |
| TGCTCAAAATCAGACCCAAA+AGG | - | chr8_1:54713225-54713244 | None:intergenic | 40.0% | |
| !! | TTTTGGGTCTGATTTTGAGC+AGG | + | chr8_1:54713224-54713243 | Msa1201550:intron | 40.0% |
| !! | GCTTTTAAGGGCATATCTTC+TGG | - | chr8_1:54713267-54713286 | None:intergenic | 40.0% |
| GAAGTTTCGGAAGTTTCTCA+AGG | - | chr8_1:54713323-54713342 | None:intergenic | 40.0% | |
| AGTATGTAGCTTGAAGGCAA+AGG | - | chr8_1:54713376-54713395 | None:intergenic | 40.0% | |
| ! | AACCAAAGCATCACTCCAAC+TGG | + | chr8_1:54710910-54710929 | Msa1201550:five_prime_UTR | 45.0% |
| ! | GAAGAAAGGTTTTGCAGGTG+AGG | - | chr8_1:54710983-54711002 | None:intergenic | 45.0% |
| GGTGAATGGTGACAGAAGAA+AGG | - | chr8_1:54710997-54711016 | None:intergenic | 45.0% | |
| GCAGGATCCTCAATTATGCT+TGG | + | chr8_1:54711406-54711425 | Msa1201550:intron | 45.0% | |
| !! | CAATGTGTTGAGGGTACCAT+AGG | - | chr8_1:54711472-54711491 | None:intergenic | 45.0% |
| GGTACCCTCAACACATTGTT+TGG | + | chr8_1:54711474-54711493 | Msa1201550:CDS | 45.0% | |
| TCTTAGCACAAATCCAGTCC+CGG | + | chr8_1:54711497-54711516 | Msa1201550:CDS | 45.0% | |
| ACCTCAATTGAGGTCTTACC+GGG | - | chr8_1:54711518-54711537 | None:intergenic | 45.0% | |
| ATACTCCGCTTTGCAGAGTT+CGG | - | chr8_1:54711720-54711739 | None:intergenic | 45.0% | |
| ! | GAGTATCCATGGTTTGTGAC+CGG | + | chr8_1:54711734-54711753 | Msa1201550:CDS | 45.0% |
| ! | AGAGTAGCCCTTTTCGGTTT+TGG | + | chr8_1:54712742-54712761 | Msa1201550:intron | 45.0% |
| CAGCTGTTCCAAAACCGAAA+AGG | - | chr8_1:54712753-54712772 | None:intergenic | 45.0% | |
| ! | ATCATGGCTTGCGTGTAACA+TGG | + | chr8_1:54712809-54712828 | Msa1201550:intron | 45.0% |
| TTTGGAGGGACCAGAAATCT+AGG | + | chr8_1:54712854-54712873 | Msa1201550:intron | 45.0% | |
| !!! | AATATATATAACATTATTTT+TGG | - | chr8_1:54712053-54712072 | None:intergenic | 5.0% |
| AGCCAGTTGGAGTGATGCTT+TGG | - | chr8_1:54710915-54710934 | None:intergenic | 50.0% | |
| AATTGAGGTCTTACCGGGAC+TGG | - | chr8_1:54711513-54711532 | None:intergenic | 50.0% | |
| TCCCGGTAAGACCTCAATTG+AGG | + | chr8_1:54711514-54711533 | Msa1201550:intron | 50.0% | |
| ! | TCTGCAAAGCGGAGTATCCA+TGG | + | chr8_1:54711723-54711742 | Msa1201550:CDS | 50.0% |
| AGACATCCGGTCACAAACCA+TGG | - | chr8_1:54711743-54711762 | None:intergenic | 50.0% | |
| GGTTTGTGACCGGATGTCTA+TGG | + | chr8_1:54711744-54711763 | Msa1201550:CDS | 50.0% | |
| GGTCATAGCTGCAGATACAC+CGG | + | chr8_1:54711784-54711803 | Msa1201550:CDS | 50.0% | |
| AAAGGGCTACTCTTTCCCCT+TGG | - | chr8_1:54712735-54712754 | None:intergenic | 50.0% | |
| ! | GGGGAAAGAGTAGCCCTTTT+CGG | + | chr8_1:54712736-54712755 | Msa1201550:intron | 50.0% |
| CAAGCCATGATGCTGCAACA+TGG | - | chr8_1:54712800-54712819 | None:intergenic | 50.0% | |
| CCTTGCCGAACTCTGCAAAG+CGG | + | chr8_1:54711712-54711731 | Msa1201550:CDS | 55.0% | |
| AGCTGCAGATACACCGGAAG+AGG | + | chr8_1:54711790-54711809 | Msa1201550:CDS | 55.0% | |
| GCCTCCATGTTGCAGCATCA+TGG | + | chr8_1:54712793-54712812 | Msa1201550:intron | 55.0% | |
| GCCATGATGCTGCAACATGG+AGG | - | chr8_1:54712797-54712816 | None:intergenic | 55.0% | |
| CCGCTTTGCAGAGTTCGGCA+AGG | - | chr8_1:54711715-54711734 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 54710881 | 54713704 | 54710881 | ID=Msa1201550;Name=Msa1201550 |
| chr8_1 | mRNA | 54710881 | 54713704 | 54710881 | ID=Msa1201550-mRNA-1;Parent=Msa1201550;Name=Msa1201550-mRNA-1;_AED=0.26;_eAED=0.26;_QI=211|0.8|0.83|1|0.2|0.66|6|390|129 |
| chr8_1 | exon | 54710881 | 54711100 | 54710881 | ID=Msa1201550-mRNA-1:exon:17655;Parent=Msa1201550-mRNA-1 |
| chr8_1 | exon | 54711267 | 54711327 | 54711267 | ID=Msa1201550-mRNA-1:exon:17656;Parent=Msa1201550-mRNA-1 |
| chr8_1 | exon | 54711410 | 54711518 | 54711410 | ID=Msa1201550-mRNA-1:exon:17657;Parent=Msa1201550-mRNA-1 |
| chr8_1 | exon | 54711705 | 54711811 | 54711705 | ID=Msa1201550-mRNA-1:exon:17658;Parent=Msa1201550-mRNA-1 |
| chr8_1 | exon | 54713090 | 54713124 | 54713090 | ID=Msa1201550-mRNA-1:exon:17659;Parent=Msa1201550-mRNA-1 |
| chr8_1 | exon | 54713246 | 54713704 | 54713246 | ID=Msa1201550-mRNA-1:exon:17660;Parent=Msa1201550-mRNA-1 |
| chr8_1 | five_prime_UTR | 54710881 | 54711091 | 54710881 | ID=Msa1201550-mRNA-1:five_prime_utr;Parent=Msa1201550-mRNA-1 |
| chr8_1 | CDS | 54711092 | 54711100 | 54711092 | ID=Msa1201550-mRNA-1:cds;Parent=Msa1201550-mRNA-1 |
| chr8_1 | CDS | 54711267 | 54711327 | 54711267 | ID=Msa1201550-mRNA-1:cds;Parent=Msa1201550-mRNA-1 |
| chr8_1 | CDS | 54711410 | 54711518 | 54711410 | ID=Msa1201550-mRNA-1:cds;Parent=Msa1201550-mRNA-1 |
| chr8_1 | CDS | 54711705 | 54711811 | 54711705 | ID=Msa1201550-mRNA-1:cds;Parent=Msa1201550-mRNA-1 |
| chr8_1 | CDS | 54713090 | 54713124 | 54713090 | ID=Msa1201550-mRNA-1:cds;Parent=Msa1201550-mRNA-1 |
| chr8_1 | CDS | 54713246 | 54713314 | 54713246 | ID=Msa1201550-mRNA-1:cds;Parent=Msa1201550-mRNA-1 |
| chr8_1 | three_prime_UTR | 54713315 | 54713704 | 54713315 | ID=Msa1201550-mRNA-1:three_prime_utr;Parent=Msa1201550-mRNA-1 |
| Gene Sequence |
| Protein sequence |
