Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1272870 | XP_013444037.1 | 45.495 | 222 | 114 | 3 | 2 | 218 | 18 | 237 | 7.59e-55 | 188 |
| Msa1272870 | XP_013444037.1 | 53.691 | 149 | 62 | 3 | 71 | 214 | 10 | 156 | 1.47e-38 | 146 |
| Msa1272870 | XP_013444037.1 | 94.144 | 222 | 13 | 0 | 2 | 223 | 98 | 319 | 9.32e-153 | 437 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1272870 | sp|Q9FLP6|SUMO2_ARATH | 63.636 | 77 | 28 | 0 | 66 | 142 | 12 | 88 | 2.62e-29 | 108 |
| Msa1272870 | sp|Q9FLP6|SUMO2_ARATH | 65.789 | 76 | 26 | 0 | 143 | 218 | 12 | 87 | 1.98e-25 | 98.6 |
| Msa1272870 | sp|Q9FLP6|SUMO2_ARATH | 58.730 | 63 | 26 | 0 | 2 | 64 | 25 | 87 | 2.50e-18 | 80.1 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1272870 | G7ZWR8 | 45.495 | 222 | 114 | 3 | 2 | 218 | 18 | 237 | 3.62e-55 | 188 |
| Msa1272870 | G7ZWR8 | 53.691 | 149 | 62 | 3 | 71 | 214 | 10 | 156 | 7.02e-39 | 146 |
| Msa1272870 | G7ZWR8 | 94.144 | 222 | 13 | 0 | 2 | 223 | 98 | 319 | 4.45e-153 | 437 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0043980 | Msa1272870 | 0.806855 | 6.716019e-50 | -8.615850e-47 |
| Msa0065950 | Msa1272870 | 0.809424 | 1.905471e-50 | -8.615850e-47 |
| Msa0079180 | Msa1272870 | 0.802871 | 4.566669e-49 | -8.615850e-47 |
| Msa0608160 | Msa1272870 | 0.801644 | 8.170025e-49 | -8.615850e-47 |
| Msa0635380 | Msa1272870 | 0.811308 | 7.469372e-51 | -8.615850e-47 |
| Msa0648080 | Msa1272870 | 0.803828 | 2.893503e-49 | -8.615850e-47 |
| Msa0653490 | Msa1272870 | 0.802192 | 6.303053e-49 | -8.615850e-47 |
| Msa0769980 | Msa1272870 | 0.802064 | 6.698970e-49 | -8.615850e-47 |
| Msa0771720 | Msa1272870 | 0.803867 | 2.839329e-49 | -8.615850e-47 |
| Msa0216530 | Msa1272870 | 0.804960 | 1.680398e-49 | -8.615850e-47 |
| Msa1230080 | Msa1272870 | 0.846248 | 2.447301e-59 | -8.615850e-47 |
| Msa1272620 | Msa1272870 | 0.818893 | 1.545684e-52 | -8.615850e-47 |
| Msa1272870 | Msa1298510 | 0.809014 | 2.332897e-50 | -8.615850e-47 |
| Msa1272870 | Msa1310400 | 0.922434 | 9.889348e-89 | -8.615850e-47 |
| Msa1272870 | Msa1337170 | 0.802580 | 5.244984e-49 | -8.615850e-47 |
| Msa1272870 | Msa1397120 | 0.809257 | 2.069143e-50 | -8.615850e-47 |
| Msa1272870 | Msa1403890 | 0.803397 | 3.554273e-49 | -8.615850e-47 |
| Msa0376910 | Msa1272870 | 0.805027 | 1.627244e-49 | -8.615850e-47 |
| Msa0412840 | Msa1272870 | 0.802533 | 5.361917e-49 | -8.615850e-47 |
| Msa0471900 | Msa1272870 | 0.812038 | 5.183784e-51 | -8.615850e-47 |
| Msa1034150 | Msa1272870 | 0.802871 | 4.566669e-49 | -8.615850e-47 |
| Msa0261550 | Msa1272870 | 0.807385 | 5.186658e-50 | -8.615850e-47 |
| Msa0261720 | Msa1272870 | 0.801259 | 9.795982e-49 | -8.615850e-47 |
| Msa0343850 | Msa1272870 | 0.812731 | 3.657624e-51 | -8.615850e-47 |
| Msa0344910 | Msa1272870 | 0.804351 | 2.251978e-49 | -8.615850e-47 |
| Msa1210020 | Msa1272870 | 0.805584 | 1.244220e-49 | -8.615850e-47 |
| Msa0545700 | Msa1272870 | 0.804386 | 2.214928e-49 | -8.615850e-47 |
| Msa0927380 | Msa1272870 | 0.810213 | 1.288955e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1272870 | MtrunA17_Chr8g0337911 | 94.144 | 222 | 13 | 0 | 2 | 223 | 145 | 366 | 1.60e-156 | 438 |
| Msa1272870 | MtrunA17_Chr8g0337911 | 45.495 | 222 | 114 | 3 | 2 | 218 | 65 | 284 | 1.38e-58 | 189 |
| Msa1272870 | MtrunA17_Chr8g0337911 | 51.707 | 205 | 91 | 4 | 16 | 214 | 1 | 203 | 8.75e-56 | 181 |
| Msa1272870 | MtrunA17_Chr8g0337921 | 40.271 | 221 | 107 | 3 | 2 | 220 | 37 | 234 | 1.00e-53 | 172 |
| Msa1272870 | MtrunA17_Chr3g0099761 | 62.162 | 74 | 28 | 0 | 69 | 142 | 21 | 94 | 5.98e-29 | 104 |
| Msa1272870 | MtrunA17_Chr3g0099761 | 66.197 | 71 | 24 | 0 | 148 | 218 | 23 | 93 | 3.07e-25 | 95.1 |
| Msa1272870 | MtrunA17_Chr3g0099761 | 57.143 | 63 | 27 | 0 | 2 | 64 | 31 | 93 | 5.20e-19 | 79.0 |
| Msa1272870 | MtrunA17_Chr3g0099771 | 60.811 | 74 | 29 | 0 | 69 | 142 | 21 | 94 | 1.22e-28 | 103 |
| Msa1272870 | MtrunA17_Chr3g0099771 | 66.197 | 71 | 24 | 0 | 148 | 218 | 23 | 93 | 2.50e-25 | 95.1 |
| Msa1272870 | MtrunA17_Chr3g0099771 | 57.143 | 63 | 27 | 0 | 2 | 64 | 31 | 93 | 4.43e-19 | 79.0 |
| Msa1272870 | MtrunA17_Chr3g0099841 | 43.478 | 92 | 34 | 2 | 132 | 206 | 1 | 91 | 6.86e-15 | 67.8 |
| Msa1272870 | MtrunA17_Chr3g0099841 | 54.902 | 51 | 23 | 0 | 2 | 52 | 41 | 91 | 1.06e-11 | 59.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1272870 | AT5G55160.1 | 63.636 | 77 | 28 | 0 | 66 | 142 | 12 | 88 | 2.66e-30 | 108 |
| Msa1272870 | AT5G55160.1 | 65.789 | 76 | 26 | 0 | 143 | 218 | 12 | 87 | 2.02e-26 | 98.6 |
| Msa1272870 | AT5G55160.1 | 58.730 | 63 | 26 | 0 | 2 | 64 | 25 | 87 | 2.54e-19 | 80.1 |
| Msa1272870 | AT4G26840.1 | 56.180 | 89 | 39 | 0 | 54 | 142 | 1 | 89 | 2.71e-28 | 103 |
| Msa1272870 | AT4G26840.1 | 61.446 | 83 | 32 | 0 | 136 | 218 | 6 | 88 | 2.06e-26 | 98.6 |
| Msa1272870 | AT4G26840.1 | 58.730 | 63 | 26 | 0 | 2 | 64 | 26 | 88 | 1.53e-19 | 80.5 |
| Msa1272870 | AT5G55160.2 | 54.444 | 90 | 28 | 1 | 66 | 142 | 12 | 101 | 1.39e-26 | 99.4 |
| Msa1272870 | AT5G55160.2 | 56.180 | 89 | 26 | 1 | 143 | 218 | 12 | 100 | 3.26e-23 | 90.5 |
| Msa1272870 | AT5G55160.2 | 58.730 | 63 | 26 | 0 | 2 | 64 | 38 | 100 | 6.15e-19 | 79.3 |
| Msa1272870 | AT2G32765.1 | 37.895 | 95 | 50 | 1 | 135 | 220 | 6 | 100 | 7.61e-15 | 68.6 |
| Msa1272870 | AT2G32765.1 | 35.955 | 89 | 48 | 1 | 58 | 137 | 6 | 94 | 2.08e-13 | 64.7 |
| Msa1272870 | AT5G55170.1 | 43.243 | 74 | 42 | 0 | 66 | 139 | 13 | 86 | 1.38e-14 | 67.8 |
| Msa1272870 | AT5G55170.1 | 50.000 | 78 | 39 | 0 | 139 | 216 | 9 | 86 | 2.38e-14 | 67.4 |
| Msa1272870 | AT5G55170.1 | 52.459 | 61 | 29 | 0 | 2 | 62 | 26 | 86 | 3.17e-12 | 61.6 |
| Msa1272870 | AT5G55170.3 | 52.459 | 61 | 29 | 0 | 2 | 62 | 22 | 82 | 3.16e-12 | 61.6 |
| Msa1272870 | AT5G55170.3 | 53.333 | 60 | 28 | 0 | 157 | 216 | 23 | 82 | 3.88e-11 | 58.5 |
| Msa1272870 | AT5G55170.3 | 40.000 | 65 | 39 | 0 | 75 | 139 | 18 | 82 | 4.81e-11 | 58.2 |
Find 38 sgRNAs with CRISPR-Local
Find 284 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGACATTGTTTGGATATTAA+TGG | 0.180647 | 8_3:+6547405 | Msa1272870:CDS |
| TTTGATAGCAATGTAAATTA+TGG | 0.212713 | 8_3:+6549462 | Msa1272870:three_prime_UTR |
| GGAGTTGCATTTCTGTTTAA+TGG | 0.233057 | 8_3:+6549129 | Msa1272870:CDS |
| TTATGGTTATCGACATTGTT+TGG | 0.343543 | 8_3:+6547395 | Msa1272870:CDS |
| TGACCTGGCCCTTGACTTTG+AGG | 0.361593 | 8_3:-6548825 | None:intergenic |
| GACTTTAGTGCTACGGTAAG+AGG | 0.371082 | 8_3:+6549355 | Msa1272870:exon |
| GAGTTGCATTTCTGTTTAAT+GGG | 0.373760 | 8_3:+6549130 | Msa1272870:CDS |
| CTAGAGACACAGACCTCATC+TGG | 0.398020 | 8_3:-6549177 | None:intergenic |
| TCGGTGGATTTCAATTCAAT+TGG | 0.407448 | 8_3:+6548395 | Msa1272870:CDS |
| GTTGCTGTAGGATGGGGTTG+AGG | 0.419994 | 8_3:+6547323 | Msa1272870:intron |
| CGGCTAACACGAACCTCGTT+TGG | 0.440260 | 8_3:-6548458 | None:intergenic |
| GTTGGGTTTGAAGCTTCATT+CGG | 0.457836 | 8_3:+6549036 | Msa1272870:CDS |
| ATTCAAACACAAACCTCATC+AGG | 0.463923 | 8_3:-6547474 | None:intergenic |
| TTTCTTGTAGCTGCAAATGA+TGG | 0.476318 | 8_3:+6547665 | Msa1272870:intron |
| TTATATACAGCCGTTACGGC+TGG | 0.502753 | 8_3:+6549437 | Msa1272870:three_prime_UTR |
| ATATTTGATGCAGCTGGGAA+TGG | 0.503354 | 8_3:+6549286 | Msa1272870:intron |
| TATATTATATACAGCCGTTA+CGG | 0.506336 | 8_3:+6549433 | Msa1272870:three_prime_UTR |
| CTATCTTCTATGATCAGAGC+AGG | 0.522009 | 8_3:+6548794 | Msa1272870:CDS |
| ATGCAGCTGGGAATGGAAGA+TGG | 0.524131 | 8_3:+6549293 | Msa1272870:intron |
| GACCTCATCTGGAGTCTGCT+CGG | 0.525073 | 8_3:-6549166 | None:intergenic |
| GTGTTTAGACTTTAGTGCTA+CGG | 0.525831 | 8_3:+6549348 | Msa1272870:exon |
| GAAACTGAAGGTCAAGTGCC+AGG | 0.538121 | 8_3:+6547734 | Msa1272870:CDS |
| CTATCAAAGTCCAGCCGTAA+CGG | 0.546953 | 8_3:-6549447 | None:intergenic |
| GTTTAATGAGCATCACGTGC+GGG | 0.561035 | 8_3:+6548424 | Msa1272870:CDS |
| CTGCAGATGCAAATGGTGGA+TGG | 0.564540 | 8_3:+6548757 | Msa1272870:intron |
| GCGCATCAACCTCAAAGTCA+AGG | 0.564992 | 8_3:+6548816 | Msa1272870:CDS |
| CAACCTCAAAGTCAAGGGCC+AGG | 0.566066 | 8_3:+6548822 | Msa1272870:CDS |
| GTACTAAATACTAGAGACAT+TGG | 0.571916 | 8_3:-6549407 | None:intergenic |
| CGCATCAACCTCAAAGTCAA+GGG | 0.584028 | 8_3:+6548817 | Msa1272870:CDS |
| TTGTAGCTGCAAATGATGGA+AGG | 0.589932 | 8_3:+6547669 | Msa1272870:intron |
| TGCTTACTGTAATCATCACT+CGG | 0.593563 | 8_3:+6548376 | Msa1272870:CDS |
| TGTTTAATGAGCATCACGTG+CGG | 0.628554 | 8_3:+6548423 | Msa1272870:CDS |
| AGCTGAGCAGACTCCTGATG+AGG | 0.630603 | 8_3:+6547461 | Msa1272870:CDS |
| AATTGCACGCATGAAACTGA+AGG | 0.631327 | 8_3:+6547722 | Msa1272870:CDS |
| GTCCGAGCAGACTCCAGATG+AGG | 0.644410 | 8_3:+6549164 | Msa1272870:CDS |
| GGCAGAGCAGTCTCCAAACG+AGG | 0.646506 | 8_3:+6548445 | Msa1272870:CDS |
| TTTGCTGCAGATGCAAATGG+TGG | 0.657290 | 8_3:+6548753 | Msa1272870:intron |
| TTACTGTAATCATCACTCGG+TGG | 0.782333 | 8_3:+6548379 | Msa1272870:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTATTTTGTTTTGTAA+AGG | - | chr8_3:6547996-6548015 | None:intergenic | 10.0% |
| !!! | ATCAATTTTTTTTTTTTTGA+AGG | + | chr8_3:6549485-6549504 | Msa1272870:three_prime_UTR | 10.0% |
| !!! | TTTTTTATTTTGTTTTGTAA+AGG | - | chr8_3:6547996-6548015 | None:intergenic | 10.0% |
| !!! | ATCAATTTTTTTTTTTTTGA+AGG | + | chr8_3:6549485-6549504 | Msa1272870:three_prime_UTR | 10.0% |
| !! | TGATAAAATGAAATCAAAAT+AGG | + | chr8_3:6548254-6548273 | Msa1272870:intron | 15.0% |
| !! | TGATAAAATGAAATCAAAAT+AGG | + | chr8_3:6548254-6548273 | Msa1272870:intron | 15.0% |
| !! | ATTATAGCTTATAATCTACT+AGG | + | chr8_3:6547244-6547263 | Msa1272870:intron | 20.0% |
| !!! | ATATGATAGTTTGGTAATTT+TGG | + | chr8_3:6547301-6547320 | Msa1272870:intron | 20.0% |
| !! | AGAATGTAAACAACAATAAA+AGG | - | chr8_3:6547624-6547643 | None:intergenic | 20.0% |
| !!! | TTTATTGTTGTTTACATTCT+TGG | + | chr8_3:6547624-6547643 | Msa1272870:intron | 20.0% |
| !!! | TTTGGTTTTTTTAAGTAGTT+TGG | + | chr8_3:6548117-6548136 | Msa1272870:intron | 20.0% |
| !!! | TTTTTAAGTAGTTTGGTTTT+TGG | + | chr8_3:6548124-6548143 | Msa1272870:intron | 20.0% |
| !!! | TATAGTCTTGTTTATATTCT+TGG | + | chr8_3:6548710-6548729 | Msa1272870:intron | 20.0% |
| !!! | TTTGATAGCAATGTAAATTA+TGG | + | chr8_3:6549462-6549481 | Msa1272870:three_prime_UTR | 20.0% |
| !! | ATTATAGCTTATAATCTACT+AGG | + | chr8_3:6547244-6547263 | Msa1272870:intron | 20.0% |
| !!! | ATATGATAGTTTGGTAATTT+TGG | + | chr8_3:6547301-6547320 | Msa1272870:intron | 20.0% |
| !! | AGAATGTAAACAACAATAAA+AGG | - | chr8_3:6547624-6547643 | None:intergenic | 20.0% |
| !!! | TTTATTGTTGTTTACATTCT+TGG | + | chr8_3:6547624-6547643 | Msa1272870:intron | 20.0% |
| !!! | TTTGGTTTTTTTAAGTAGTT+TGG | + | chr8_3:6548117-6548136 | Msa1272870:intron | 20.0% |
| !!! | TTTTTAAGTAGTTTGGTTTT+TGG | + | chr8_3:6548124-6548143 | Msa1272870:intron | 20.0% |
| !!! | TATAGTCTTGTTTATATTCT+TGG | + | chr8_3:6548710-6548729 | Msa1272870:intron | 20.0% |
| !!! | TTTGATAGCAATGTAAATTA+TGG | + | chr8_3:6549462-6549481 | Msa1272870:three_prime_UTR | 20.0% |
| ! | AATTACATTATGCAATAGCA+GGG | - | chr8_3:6547181-6547200 | None:intergenic | 25.0% |
| ! | AAATTACATTATGCAATAGC+AGG | - | chr8_3:6547182-6547201 | None:intergenic | 25.0% |
| ! | AAAAAGCTTATGGATGTTTA+TGG | + | chr8_3:6547378-6547397 | Msa1272870:CDS | 25.0% |
| !! | TACTTTTGTATGTGTGATTT+CGG | + | chr8_3:6547510-6547529 | Msa1272870:intron | 25.0% |
| ! | AAGAGATAAAATAACAGTTG+TGG | + | chr8_3:6547554-6547573 | Msa1272870:intron | 25.0% |
| ! | AGAGATAAAATAACAGTTGT+GGG | + | chr8_3:6547555-6547574 | Msa1272870:intron | 25.0% |
| ! | AAACCTAATCAAACTGTTAA+TGG | + | chr8_3:6547902-6547921 | Msa1272870:intron | 25.0% |
| ! | GTAAATTATCCTTCAAAGTT+TGG | + | chr8_3:6548054-6548073 | Msa1272870:intron | 25.0% |
| !! | TTTGATTTAACAGTTGAGTT+TGG | + | chr8_3:6548092-6548111 | Msa1272870:intron | 25.0% |
| ! | CTAATTAATACTATCAGCTA+AGG | + | chr8_3:6548187-6548206 | Msa1272870:intron | 25.0% |
| !!! | ATATACTGATTTGTGGTTTT+TGG | + | chr8_3:6548285-6548304 | Msa1272870:intron | 25.0% |
| !!! | TTTTCAATTCTTAGCCTTTT+TGG | + | chr8_3:6548855-6548874 | Msa1272870:intron | 25.0% |
| ! | TATGCTAATTTGGATAATGT+AGG | + | chr8_3:6549014-6549033 | Msa1272870:intron | 25.0% |
| ! | TAATTTGGATAATGTAGGTT+GGG | + | chr8_3:6549019-6549038 | Msa1272870:intron | 25.0% |
| !!! | TTGTCGATATTGTTTTGATT+TGG | + | chr8_3:6549104-6549123 | Msa1272870:CDS | 25.0% |
| ! | GTGAAATAATGAACATATGT+TGG | - | chr8_3:6549216-6549235 | None:intergenic | 25.0% |
| ! | AAATTATATTTGATGCAGCT+GGG | + | chr8_3:6549281-6549300 | Msa1272870:intron | 25.0% |
| !!! | AAGAGGAATTAGTTTTTTGT+TGG | + | chr8_3:6549372-6549391 | Msa1272870:three_prime_UTR | 25.0% |
| !!! | AGAGGAATTAGTTTTTTGTT+GGG | + | chr8_3:6549373-6549392 | Msa1272870:three_prime_UTR | 25.0% |
| !!! | TTAGTTTTTTGTTGGGATAT+AGG | + | chr8_3:6549380-6549399 | Msa1272870:three_prime_UTR | 25.0% |
| ! | TATATTATATACAGCCGTTA+CGG | + | chr8_3:6549433-6549452 | Msa1272870:three_prime_UTR | 25.0% |
| ! | AATTACATTATGCAATAGCA+GGG | - | chr8_3:6547181-6547200 | None:intergenic | 25.0% |
| ! | AAATTACATTATGCAATAGC+AGG | - | chr8_3:6547182-6547201 | None:intergenic | 25.0% |
| ! | AAAAAGCTTATGGATGTTTA+TGG | + | chr8_3:6547378-6547397 | Msa1272870:CDS | 25.0% |
| !! | TACTTTTGTATGTGTGATTT+CGG | + | chr8_3:6547510-6547529 | Msa1272870:intron | 25.0% |
| ! | AAGAGATAAAATAACAGTTG+TGG | + | chr8_3:6547554-6547573 | Msa1272870:intron | 25.0% |
| ! | AGAGATAAAATAACAGTTGT+GGG | + | chr8_3:6547555-6547574 | Msa1272870:intron | 25.0% |
| ! | AAACCTAATCAAACTGTTAA+TGG | + | chr8_3:6547902-6547921 | Msa1272870:intron | 25.0% |
| ! | GTAAATTATCCTTCAAAGTT+TGG | + | chr8_3:6548054-6548073 | Msa1272870:intron | 25.0% |
| !! | TTTGATTTAACAGTTGAGTT+TGG | + | chr8_3:6548092-6548111 | Msa1272870:intron | 25.0% |
| ! | CTAATTAATACTATCAGCTA+AGG | + | chr8_3:6548187-6548206 | Msa1272870:intron | 25.0% |
| !!! | ATATACTGATTTGTGGTTTT+TGG | + | chr8_3:6548285-6548304 | Msa1272870:intron | 25.0% |
| !!! | TTTTCAATTCTTAGCCTTTT+TGG | + | chr8_3:6548855-6548874 | Msa1272870:intron | 25.0% |
| ! | TATGCTAATTTGGATAATGT+AGG | + | chr8_3:6549014-6549033 | Msa1272870:intron | 25.0% |
| ! | TAATTTGGATAATGTAGGTT+GGG | + | chr8_3:6549019-6549038 | Msa1272870:intron | 25.0% |
| !!! | TTGTCGATATTGTTTTGATT+TGG | + | chr8_3:6549104-6549123 | Msa1272870:CDS | 25.0% |
| ! | GTGAAATAATGAACATATGT+TGG | - | chr8_3:6549216-6549235 | None:intergenic | 25.0% |
| ! | AAATTATATTTGATGCAGCT+GGG | + | chr8_3:6549281-6549300 | Msa1272870:intron | 25.0% |
| !!! | AAGAGGAATTAGTTTTTTGT+TGG | + | chr8_3:6549372-6549391 | Msa1272870:three_prime_UTR | 25.0% |
| !!! | AGAGGAATTAGTTTTTTGTT+GGG | + | chr8_3:6549373-6549392 | Msa1272870:three_prime_UTR | 25.0% |
| !!! | TTAGTTTTTTGTTGGGATAT+AGG | + | chr8_3:6549380-6549399 | Msa1272870:three_prime_UTR | 25.0% |
| ! | TATATTATATACAGCCGTTA+CGG | + | chr8_3:6549433-6549452 | Msa1272870:three_prime_UTR | 25.0% |
| AGCTAAATACTTTACCTCAT+TGG | + | chr8_3:6547124-6547143 | Msa1272870:intron | 30.0% | |
| TAGCTCAATGTTGTAAATAG+CGG | + | chr8_3:6547150-6547169 | Msa1272870:intron | 30.0% | |
| CAAAACCTGAAGTTAATATG+AGG | + | chr8_3:6547275-6547294 | Msa1272870:intron | 30.0% | |
| !!! | ACATCCATAAGCTTTTTCAA+TGG | - | chr8_3:6547375-6547394 | None:intergenic | 30.0% |
| TTATGGTTATCGACATTGTT+TGG | + | chr8_3:6547395-6547414 | Msa1272870:CDS | 30.0% | |
| CGACATTGTTTGGATATTAA+TGG | + | chr8_3:6547405-6547424 | Msa1272870:CDS | 30.0% | |
| !! | TTGTAGTTTTGCTCTTATGT+TGG | + | chr8_3:6547777-6547796 | Msa1272870:intron | 30.0% |
| !! | ATTGAGAGTAAGAGTATTCA+TGG | + | chr8_3:6547827-6547846 | Msa1272870:intron | 30.0% |
| GAACCATTAACAGTTTGATT+AGG | - | chr8_3:6547908-6547927 | None:intergenic | 30.0% | |
| TTGTAAAGGTAGTTCCATTT+CGG | - | chr8_3:6547982-6548001 | None:intergenic | 30.0% | |
| !!! | CTTCAAAGTTTGGTTTTTTC+CGG | + | chr8_3:6548064-6548083 | Msa1272870:intron | 30.0% |
| !!! | TAACAGTTGAGTTTGGTTTT+TGG | + | chr8_3:6548099-6548118 | Msa1272870:intron | 30.0% |
| GATAGTATTAATTAGTCCAC+AGG | - | chr8_3:6548182-6548201 | None:intergenic | 30.0% | |
| ! | AGAGACATAAAAGTACAATC+AGG | - | chr8_3:6548222-6548241 | None:intergenic | 30.0% |
| !! | CAGAGATATATACTGATTTG+TGG | + | chr8_3:6548278-6548297 | Msa1272870:intron | 30.0% |
| ! | TCGACAACATTTTGTACTAA+TGG | - | chr8_3:6548584-6548603 | None:intergenic | 30.0% |
| TACAAAATGTTGTCGAATAG+TGG | + | chr8_3:6548588-6548607 | Msa1272870:intron | 30.0% | |
| AAACCAAATGTTCTCAATCA+CGG | - | chr8_3:6548676-6548695 | None:intergenic | 30.0% | |
| ATTGAAAAAATAGACTGACC+TGG | - | chr8_3:6548843-6548862 | None:intergenic | 30.0% | |
| ATGAGTGGTATATGCTAATT+TGG | + | chr8_3:6549004-6549023 | Msa1272870:intron | 30.0% | |
| CTAATTTGGATAATGTAGGT+TGG | + | chr8_3:6549018-6549037 | Msa1272870:intron | 30.0% | |
| CACTCAATTGAAAAAGCTTA+TGG | + | chr8_3:6549071-6549090 | Msa1272870:CDS | 30.0% | |
| !!! | CGATATTGTTTTGATTTGGA+CGG | + | chr8_3:6549108-6549127 | Msa1272870:CDS | 30.0% |
| GAGTTGCATTTCTGTTTAAT+GGG | + | chr8_3:6549130-6549149 | Msa1272870:CDS | 30.0% | |
| GAAATTATATTTGATGCAGC+TGG | + | chr8_3:6549280-6549299 | Msa1272870:intron | 30.0% | |
| GTACTAAATACTAGAGACAT+TGG | - | chr8_3:6549410-6549429 | None:intergenic | 30.0% | |
| AGCTAAATACTTTACCTCAT+TGG | + | chr8_3:6547124-6547143 | Msa1272870:intron | 30.0% | |
| TAGCTCAATGTTGTAAATAG+CGG | + | chr8_3:6547150-6547169 | Msa1272870:intron | 30.0% | |
| CAAAACCTGAAGTTAATATG+AGG | + | chr8_3:6547275-6547294 | Msa1272870:intron | 30.0% | |
| !!! | ACATCCATAAGCTTTTTCAA+TGG | - | chr8_3:6547375-6547394 | None:intergenic | 30.0% |
| TTATGGTTATCGACATTGTT+TGG | + | chr8_3:6547395-6547414 | Msa1272870:CDS | 30.0% | |
| CGACATTGTTTGGATATTAA+TGG | + | chr8_3:6547405-6547424 | Msa1272870:CDS | 30.0% | |
| !! | TTGTAGTTTTGCTCTTATGT+TGG | + | chr8_3:6547777-6547796 | Msa1272870:intron | 30.0% |
| !! | ATTGAGAGTAAGAGTATTCA+TGG | + | chr8_3:6547827-6547846 | Msa1272870:intron | 30.0% |
| GAACCATTAACAGTTTGATT+AGG | - | chr8_3:6547908-6547927 | None:intergenic | 30.0% | |
| TTGTAAAGGTAGTTCCATTT+CGG | - | chr8_3:6547982-6548001 | None:intergenic | 30.0% | |
| !!! | CTTCAAAGTTTGGTTTTTTC+CGG | + | chr8_3:6548064-6548083 | Msa1272870:intron | 30.0% |
| !!! | TAACAGTTGAGTTTGGTTTT+TGG | + | chr8_3:6548099-6548118 | Msa1272870:intron | 30.0% |
| GATAGTATTAATTAGTCCAC+AGG | - | chr8_3:6548182-6548201 | None:intergenic | 30.0% | |
| ! | AGAGACATAAAAGTACAATC+AGG | - | chr8_3:6548222-6548241 | None:intergenic | 30.0% |
| !! | CAGAGATATATACTGATTTG+TGG | + | chr8_3:6548278-6548297 | Msa1272870:intron | 30.0% |
| ! | TCGACAACATTTTGTACTAA+TGG | - | chr8_3:6548584-6548603 | None:intergenic | 30.0% |
| TACAAAATGTTGTCGAATAG+TGG | + | chr8_3:6548588-6548607 | Msa1272870:intron | 30.0% | |
| AAACCAAATGTTCTCAATCA+CGG | - | chr8_3:6548676-6548695 | None:intergenic | 30.0% | |
| ATTGAAAAAATAGACTGACC+TGG | - | chr8_3:6548843-6548862 | None:intergenic | 30.0% | |
| ATGAGTGGTATATGCTAATT+TGG | + | chr8_3:6549004-6549023 | Msa1272870:intron | 30.0% | |
| CTAATTTGGATAATGTAGGT+TGG | + | chr8_3:6549018-6549037 | Msa1272870:intron | 30.0% | |
| CACTCAATTGAAAAAGCTTA+TGG | + | chr8_3:6549071-6549090 | Msa1272870:CDS | 30.0% | |
| !!! | CGATATTGTTTTGATTTGGA+CGG | + | chr8_3:6549108-6549127 | Msa1272870:CDS | 30.0% |
| GAGTTGCATTTCTGTTTAAT+GGG | + | chr8_3:6549130-6549149 | Msa1272870:CDS | 30.0% | |
| GAAATTATATTTGATGCAGC+TGG | + | chr8_3:6549280-6549299 | Msa1272870:intron | 30.0% | |
| GTACTAAATACTAGAGACAT+TGG | - | chr8_3:6549410-6549429 | None:intergenic | 30.0% | |
| ACATTGAGCTATAACCAATG+AGG | - | chr8_3:6547141-6547160 | None:intergenic | 35.0% | |
| TAGAGAACGCAAAACAATAG+CGG | - | chr8_3:6547212-6547231 | None:intergenic | 35.0% | |
| ATACGCCTCATATTAACTTC+AGG | - | chr8_3:6547283-6547302 | None:intergenic | 35.0% | |
| ATGAGGCGTATATGATAGTT+TGG | + | chr8_3:6547292-6547311 | Msa1272870:intron | 35.0% | |
| !!! | TTGGTAATTTTGGTTGCTGT+AGG | + | chr8_3:6547311-6547330 | Msa1272870:intron | 35.0% |
| !!! | TAATTTTGGTTGCTGTAGGA+TGG | + | chr8_3:6547315-6547334 | Msa1272870:intron | 35.0% |
| !!! | AATTTTGGTTGCTGTAGGAT+GGG | + | chr8_3:6547316-6547335 | Msa1272870:intron | 35.0% |
| CACTCCATTGAAAAAGCTTA+TGG | + | chr8_3:6547368-6547387 | Msa1272870:CDS | 35.0% | |
| !!! | GGAGTTGCTTTTCTGTTTAA+TGG | + | chr8_3:6547426-6547445 | Msa1272870:CDS | 35.0% |
| ATTCAAACACAAACCTCATC+AGG | - | chr8_3:6547477-6547496 | None:intergenic | 35.0% | |
| TTTCTTGTAGCTGCAAATGA+TGG | + | chr8_3:6547665-6547684 | Msa1272870:intron | 35.0% | |
| ! | TTGATTAGGTTTTACCGAAC+TGG | - | chr8_3:6547894-6547913 | None:intergenic | 35.0% |
| !!! | TATGTGGTTTTGTACCGAAA+TGG | + | chr8_3:6547965-6547984 | Msa1272870:intron | 35.0% |
| !! | CTGAACCATTCAGTTGTTTT+GGG | - | chr8_3:6548026-6548045 | None:intergenic | 35.0% |
| ! | ACTGAACCATTCAGTTGTTT+TGG | - | chr8_3:6548027-6548046 | None:intergenic | 35.0% |
| CGGAAAAAACCAAACTTTGA+AGG | - | chr8_3:6548066-6548085 | None:intergenic | 35.0% | |
| !! | TTGTGGTTTTTGGATGTTGT+AGG | + | chr8_3:6548295-6548314 | Msa1272870:intron | 35.0% |
| TGCTTACTGTAATCATCACT+CGG | + | chr8_3:6548376-6548395 | Msa1272870:CDS | 35.0% | |
| ! | TCGGTGGATTTCAATTCAAT+TGG | + | chr8_3:6548395-6548414 | Msa1272870:CDS | 35.0% |
| GGTAAACAATGAAAAGATGC+CGG | - | chr8_3:6548481-6548500 | None:intergenic | 35.0% | |
| CTGTTGAATATCAGCTATAG+AGG | + | chr8_3:6548508-6548527 | Msa1272870:intron | 35.0% | |
| AATCCGTGATTGAGAACATT+TGG | + | chr8_3:6548670-6548689 | Msa1272870:intron | 35.0% | |
| !! | TAGCCTTTTTGGTCTAAAGT+TGG | + | chr8_3:6548866-6548885 | Msa1272870:intron | 35.0% |
| GAACCAACTTTAGACCAAAA+AGG | - | chr8_3:6548872-6548891 | None:intergenic | 35.0% | |
| TGTAACACTAGTTCATGATG+TGG | + | chr8_3:6548913-6548932 | Msa1272870:intron | 35.0% | |
| ! | GAAATATTACAGCTTTGGCA+GGG | - | chr8_3:6548946-6548965 | None:intergenic | 35.0% |
| CTGCCAAAGCTGTAATATTT+CGG | + | chr8_3:6548945-6548964 | Msa1272870:intron | 35.0% | |
| TTAGCATATACCACTCATCA+GGG | - | chr8_3:6549002-6549021 | None:intergenic | 35.0% | |
| ATTAGCATATACCACTCATC+AGG | - | chr8_3:6549003-6549022 | None:intergenic | 35.0% | |
| GGAGTTGCATTTCTGTTTAA+TGG | + | chr8_3:6549129-6549148 | Msa1272870:CDS | 35.0% | |
| GTGTTTAGACTTTAGTGCTA+CGG | + | chr8_3:6549348-6549367 | Msa1272870:exon | 35.0% | |
| ACATTGAGCTATAACCAATG+AGG | - | chr8_3:6547141-6547160 | None:intergenic | 35.0% | |
| TAGAGAACGCAAAACAATAG+CGG | - | chr8_3:6547212-6547231 | None:intergenic | 35.0% | |
| ATACGCCTCATATTAACTTC+AGG | - | chr8_3:6547283-6547302 | None:intergenic | 35.0% | |
| ATGAGGCGTATATGATAGTT+TGG | + | chr8_3:6547292-6547311 | Msa1272870:intron | 35.0% | |
| !!! | TTGGTAATTTTGGTTGCTGT+AGG | + | chr8_3:6547311-6547330 | Msa1272870:intron | 35.0% |
| !!! | TAATTTTGGTTGCTGTAGGA+TGG | + | chr8_3:6547315-6547334 | Msa1272870:intron | 35.0% |
| !!! | AATTTTGGTTGCTGTAGGAT+GGG | + | chr8_3:6547316-6547335 | Msa1272870:intron | 35.0% |
| CACTCCATTGAAAAAGCTTA+TGG | + | chr8_3:6547368-6547387 | Msa1272870:CDS | 35.0% | |
| !!! | GGAGTTGCTTTTCTGTTTAA+TGG | + | chr8_3:6547426-6547445 | Msa1272870:CDS | 35.0% |
| ATTCAAACACAAACCTCATC+AGG | - | chr8_3:6547477-6547496 | None:intergenic | 35.0% | |
| TTTCTTGTAGCTGCAAATGA+TGG | + | chr8_3:6547665-6547684 | Msa1272870:intron | 35.0% | |
| ! | TTGATTAGGTTTTACCGAAC+TGG | - | chr8_3:6547894-6547913 | None:intergenic | 35.0% |
| !!! | TATGTGGTTTTGTACCGAAA+TGG | + | chr8_3:6547965-6547984 | Msa1272870:intron | 35.0% |
| !! | CTGAACCATTCAGTTGTTTT+GGG | - | chr8_3:6548026-6548045 | None:intergenic | 35.0% |
| ! | ACTGAACCATTCAGTTGTTT+TGG | - | chr8_3:6548027-6548046 | None:intergenic | 35.0% |
| CGGAAAAAACCAAACTTTGA+AGG | - | chr8_3:6548066-6548085 | None:intergenic | 35.0% | |
| !! | TTGTGGTTTTTGGATGTTGT+AGG | + | chr8_3:6548295-6548314 | Msa1272870:intron | 35.0% |
| TGCTTACTGTAATCATCACT+CGG | + | chr8_3:6548376-6548395 | Msa1272870:CDS | 35.0% | |
| ! | TCGGTGGATTTCAATTCAAT+TGG | + | chr8_3:6548395-6548414 | Msa1272870:CDS | 35.0% |
| GGTAAACAATGAAAAGATGC+CGG | - | chr8_3:6548481-6548500 | None:intergenic | 35.0% | |
| CTGTTGAATATCAGCTATAG+AGG | + | chr8_3:6548508-6548527 | Msa1272870:intron | 35.0% | |
| AATCCGTGATTGAGAACATT+TGG | + | chr8_3:6548670-6548689 | Msa1272870:intron | 35.0% | |
| !! | TAGCCTTTTTGGTCTAAAGT+TGG | + | chr8_3:6548866-6548885 | Msa1272870:intron | 35.0% |
| GAACCAACTTTAGACCAAAA+AGG | - | chr8_3:6548872-6548891 | None:intergenic | 35.0% | |
| TGTAACACTAGTTCATGATG+TGG | + | chr8_3:6548913-6548932 | Msa1272870:intron | 35.0% | |
| ! | GAAATATTACAGCTTTGGCA+GGG | - | chr8_3:6548946-6548965 | None:intergenic | 35.0% |
| CTGCCAAAGCTGTAATATTT+CGG | + | chr8_3:6548945-6548964 | Msa1272870:intron | 35.0% | |
| TTAGCATATACCACTCATCA+GGG | - | chr8_3:6549002-6549021 | None:intergenic | 35.0% | |
| ATTAGCATATACCACTCATC+AGG | - | chr8_3:6549003-6549022 | None:intergenic | 35.0% | |
| GGAGTTGCATTTCTGTTTAA+TGG | + | chr8_3:6549129-6549148 | Msa1272870:CDS | 35.0% | |
| GTGTTTAGACTTTAGTGCTA+CGG | + | chr8_3:6549348-6549367 | Msa1272870:exon | 35.0% | |
| !!! | ATTTTGGTTGCTGTAGGATG+GGG | + | chr8_3:6547317-6547336 | Msa1272870:intron | 40.0% |
| ! | TTGTAGCTGCAAATGATGGA+AGG | + | chr8_3:6547669-6547688 | Msa1272870:intron | 40.0% |
| AATTGCACGCATGAAACTGA+AGG | + | chr8_3:6547722-6547741 | Msa1272870:CDS | 40.0% | |
| ATTAATAGCGTTACCGAACC+TGG | - | chr8_3:6547755-6547774 | None:intergenic | 40.0% | |
| ! | GAGTATTCATGGTTCTGTTC+AGG | + | chr8_3:6547838-6547857 | Msa1272870:intron | 40.0% |
| ! | ATTCATGGTTCTGTTCAGGA+AGG | + | chr8_3:6547842-6547861 | Msa1272870:intron | 40.0% |
| ACTGGTGTAACGACTTAGTT+TGG | - | chr8_3:6547876-6547895 | None:intergenic | 40.0% | |
| ACTAAGTCGTTACACCAGTT+CGG | + | chr8_3:6547877-6547896 | Msa1272870:intron | 40.0% | |
| ACCACTGTACAAGTTCGTTA+GGG | - | chr8_3:6547932-6547951 | None:intergenic | 40.0% | |
| AACCACTGTACAAGTTCGTT+AGG | - | chr8_3:6547933-6547952 | None:intergenic | 40.0% | |
| AACGAACTTGTACAGTGGTT+TGG | + | chr8_3:6547933-6547952 | Msa1272870:intron | 40.0% | |
| !! | TTGTACAGTGGTTTGGTGTA+TGG | + | chr8_3:6547940-6547959 | Msa1272870:intron | 40.0% |
| !! | TGTACAGTGGTTTGGTGTAT+GGG | + | chr8_3:6547941-6547960 | Msa1272870:intron | 40.0% |
| ATGCACCCAAAACAACTGAA+TGG | + | chr8_3:6548018-6548037 | Msa1272870:intron | 40.0% | |
| TAGTTGAACTCACAAACCTG+TGG | + | chr8_3:6548163-6548182 | Msa1272870:intron | 40.0% | |
| !! | GGTTTTTGGATGTTGTAGGA+TGG | + | chr8_3:6548299-6548318 | Msa1272870:intron | 40.0% |
| TTACTGTAATCATCACTCGG+TGG | + | chr8_3:6548379-6548398 | Msa1272870:CDS | 40.0% | |
| TGTTTAATGAGCATCACGTG+CGG | + | chr8_3:6548423-6548442 | Msa1272870:CDS | 40.0% | |
| CTGATATTCAACAGCACTAG+TGG | - | chr8_3:6548502-6548521 | None:intergenic | 40.0% | |
| ! | CATTTTGCTGCAGATGCAAA+TGG | + | chr8_3:6548750-6548769 | Msa1272870:intron | 40.0% |
| CTATCTTCTATGATCAGAGC+AGG | + | chr8_3:6548794-6548813 | Msa1272870:CDS | 40.0% | |
| ! | CGAAATATTACAGCTTTGGC+AGG | - | chr8_3:6548947-6548966 | None:intergenic | 40.0% |
| TGGCCGAAATATTACAGCTT+TGG | - | chr8_3:6548951-6548970 | None:intergenic | 40.0% | |
| CAATTAGAAACCCTGATGAG+TGG | + | chr8_3:6548989-6549008 | Msa1272870:intron | 40.0% | |
| ! | GTTGGGTTTGAAGCTTCATT+CGG | + | chr8_3:6549036-6549055 | Msa1272870:CDS | 40.0% |
| ATATTTGATGCAGCTGGGAA+TGG | + | chr8_3:6549286-6549305 | Msa1272870:intron | 40.0% | |
| !!! | ATTTTGGTTGCTGTAGGATG+GGG | + | chr8_3:6547317-6547336 | Msa1272870:intron | 40.0% |
| ! | TTGTAGCTGCAAATGATGGA+AGG | + | chr8_3:6547669-6547688 | Msa1272870:intron | 40.0% |
| AATTGCACGCATGAAACTGA+AGG | + | chr8_3:6547722-6547741 | Msa1272870:CDS | 40.0% | |
| ATTAATAGCGTTACCGAACC+TGG | - | chr8_3:6547755-6547774 | None:intergenic | 40.0% | |
| ! | GAGTATTCATGGTTCTGTTC+AGG | + | chr8_3:6547838-6547857 | Msa1272870:intron | 40.0% |
| ! | ATTCATGGTTCTGTTCAGGA+AGG | + | chr8_3:6547842-6547861 | Msa1272870:intron | 40.0% |
| ACTGGTGTAACGACTTAGTT+TGG | - | chr8_3:6547876-6547895 | None:intergenic | 40.0% | |
| ACTAAGTCGTTACACCAGTT+CGG | + | chr8_3:6547877-6547896 | Msa1272870:intron | 40.0% | |
| ACCACTGTACAAGTTCGTTA+GGG | - | chr8_3:6547932-6547951 | None:intergenic | 40.0% | |
| AACCACTGTACAAGTTCGTT+AGG | - | chr8_3:6547933-6547952 | None:intergenic | 40.0% | |
| AACGAACTTGTACAGTGGTT+TGG | + | chr8_3:6547933-6547952 | Msa1272870:intron | 40.0% | |
| !! | TTGTACAGTGGTTTGGTGTA+TGG | + | chr8_3:6547940-6547959 | Msa1272870:intron | 40.0% |
| !! | TGTACAGTGGTTTGGTGTAT+GGG | + | chr8_3:6547941-6547960 | Msa1272870:intron | 40.0% |
| ATGCACCCAAAACAACTGAA+TGG | + | chr8_3:6548018-6548037 | Msa1272870:intron | 40.0% | |
| TAGTTGAACTCACAAACCTG+TGG | + | chr8_3:6548163-6548182 | Msa1272870:intron | 40.0% | |
| !! | GGTTTTTGGATGTTGTAGGA+TGG | + | chr8_3:6548299-6548318 | Msa1272870:intron | 40.0% |
| TTACTGTAATCATCACTCGG+TGG | + | chr8_3:6548379-6548398 | Msa1272870:CDS | 40.0% | |
| TGTTTAATGAGCATCACGTG+CGG | + | chr8_3:6548423-6548442 | Msa1272870:CDS | 40.0% | |
| CTGATATTCAACAGCACTAG+TGG | - | chr8_3:6548502-6548521 | None:intergenic | 40.0% | |
| ! | CATTTTGCTGCAGATGCAAA+TGG | + | chr8_3:6548750-6548769 | Msa1272870:intron | 40.0% |
| CTATCTTCTATGATCAGAGC+AGG | + | chr8_3:6548794-6548813 | Msa1272870:CDS | 40.0% | |
| ! | CGAAATATTACAGCTTTGGC+AGG | - | chr8_3:6548947-6548966 | None:intergenic | 40.0% |
| TGGCCGAAATATTACAGCTT+TGG | - | chr8_3:6548951-6548970 | None:intergenic | 40.0% | |
| CAATTAGAAACCCTGATGAG+TGG | + | chr8_3:6548989-6549008 | Msa1272870:intron | 40.0% | |
| ! | GTTGGGTTTGAAGCTTCATT+CGG | + | chr8_3:6549036-6549055 | Msa1272870:CDS | 40.0% |
| ATATTTGATGCAGCTGGGAA+TGG | + | chr8_3:6549286-6549305 | Msa1272870:intron | 40.0% | |
| ACCCTAACGAACTTGTACAG+TGG | + | chr8_3:6547928-6547947 | Msa1272870:intron | 45.0% | |
| !! | GGTTTGGTGTATGGGTTATG+TGG | + | chr8_3:6547949-6547968 | Msa1272870:intron | 45.0% |
| !!! | AAGTTTGGTTTTTTCCGGCG+CGG | + | chr8_3:6548069-6548088 | Msa1272870:intron | 45.0% |
| ACTGTTAAATCAAACCGCGC+CGG | - | chr8_3:6548086-6548105 | None:intergenic | 45.0% | |
| GTTTAATGAGCATCACGTGC+GGG | + | chr8_3:6548424-6548443 | Msa1272870:CDS | 45.0% | |
| TTTGCTGCAGATGCAAATGG+TGG | + | chr8_3:6548753-6548772 | Msa1272870:intron | 45.0% | |
| CGCATCAACCTCAAAGTCAA+GGG | + | chr8_3:6548817-6548836 | Msa1272870:CDS | 45.0% | |
| TTTCGGCCACTTCAATGATG+TGG | + | chr8_3:6548962-6548981 | Msa1272870:intron | 45.0% | |
| TGCTGACCACATCATTGAAG+TGG | - | chr8_3:6548971-6548990 | None:intergenic | 45.0% | |
| GACTTTAGTGCTACGGTAAG+AGG | + | chr8_3:6549355-6549374 | Msa1272870:exon | 45.0% | |
| TTATATACAGCCGTTACGGC+TGG | + | chr8_3:6549437-6549456 | Msa1272870:three_prime_UTR | 45.0% | |
| CTATCAAAGTCCAGCCGTAA+CGG | - | chr8_3:6549450-6549469 | None:intergenic | 45.0% | |
| ACCCTAACGAACTTGTACAG+TGG | + | chr8_3:6547928-6547947 | Msa1272870:intron | 45.0% | |
| !! | GGTTTGGTGTATGGGTTATG+TGG | + | chr8_3:6547949-6547968 | Msa1272870:intron | 45.0% |
| !!! | AAGTTTGGTTTTTTCCGGCG+CGG | + | chr8_3:6548069-6548088 | Msa1272870:intron | 45.0% |
| ACTGTTAAATCAAACCGCGC+CGG | - | chr8_3:6548086-6548105 | None:intergenic | 45.0% | |
| GTTTAATGAGCATCACGTGC+GGG | + | chr8_3:6548424-6548443 | Msa1272870:CDS | 45.0% | |
| TTTGCTGCAGATGCAAATGG+TGG | + | chr8_3:6548753-6548772 | Msa1272870:intron | 45.0% | |
| CGCATCAACCTCAAAGTCAA+GGG | + | chr8_3:6548817-6548836 | Msa1272870:CDS | 45.0% | |
| TTTCGGCCACTTCAATGATG+TGG | + | chr8_3:6548962-6548981 | Msa1272870:intron | 45.0% | |
| TGCTGACCACATCATTGAAG+TGG | - | chr8_3:6548971-6548990 | None:intergenic | 45.0% | |
| GACTTTAGTGCTACGGTAAG+AGG | + | chr8_3:6549355-6549374 | Msa1272870:exon | 45.0% | |
| TTATATACAGCCGTTACGGC+TGG | + | chr8_3:6549437-6549456 | Msa1272870:three_prime_UTR | 45.0% | |
| CTATCAAAGTCCAGCCGTAA+CGG | - | chr8_3:6549450-6549469 | None:intergenic | 45.0% | |
| GAAACTGAAGGTCAAGTGCC+AGG | + | chr8_3:6547734-6547753 | Msa1272870:CDS | 50.0% | |
| TGAAGGTCAAGTGCCAGGTT+CGG | + | chr8_3:6547739-6547758 | Msa1272870:intron | 50.0% | |
| CAAACGAGGTTCGTGTTAGC+CGG | + | chr8_3:6548459-6548478 | Msa1272870:intron | 50.0% | |
| ! | CTGCAGATGCAAATGGTGGA+TGG | + | chr8_3:6548757-6548776 | Msa1272870:intron | 50.0% |
| GCGCATCAACCTCAAAGTCA+AGG | + | chr8_3:6548816-6548835 | Msa1272870:CDS | 50.0% | |
| CTAGAGACACAGACCTCATC+TGG | - | chr8_3:6549180-6549199 | None:intergenic | 50.0% | |
| ATGCAGCTGGGAATGGAAGA+TGG | + | chr8_3:6549293-6549312 | Msa1272870:intron | 50.0% | |
| GAAACTGAAGGTCAAGTGCC+AGG | + | chr8_3:6547734-6547753 | Msa1272870:CDS | 50.0% | |
| TGAAGGTCAAGTGCCAGGTT+CGG | + | chr8_3:6547739-6547758 | Msa1272870:intron | 50.0% | |
| CAAACGAGGTTCGTGTTAGC+CGG | + | chr8_3:6548459-6548478 | Msa1272870:intron | 50.0% | |
| ! | CTGCAGATGCAAATGGTGGA+TGG | + | chr8_3:6548757-6548776 | Msa1272870:intron | 50.0% |
| GCGCATCAACCTCAAAGTCA+AGG | + | chr8_3:6548816-6548835 | Msa1272870:CDS | 50.0% | |
| CTAGAGACACAGACCTCATC+TGG | - | chr8_3:6549180-6549199 | None:intergenic | 50.0% | |
| ATGCAGCTGGGAATGGAAGA+TGG | + | chr8_3:6549293-6549312 | Msa1272870:intron | 50.0% | |
| GTTGCTGTAGGATGGGGTTG+AGG | + | chr8_3:6547323-6547342 | Msa1272870:intron | 55.0% | |
| AGCTGAGCAGACTCCTGATG+AGG | + | chr8_3:6547461-6547480 | Msa1272870:CDS | 55.0% | |
| CGGCTAACACGAACCTCGTT+TGG | - | chr8_3:6548461-6548480 | None:intergenic | 55.0% | |
| CAACCTCAAAGTCAAGGGCC+AGG | + | chr8_3:6548822-6548841 | Msa1272870:CDS | 55.0% | |
| TGACCTGGCCCTTGACTTTG+AGG | - | chr8_3:6548828-6548847 | None:intergenic | 55.0% | |
| ! | GACCTCATCTGGAGTCTGCT+CGG | - | chr8_3:6549169-6549188 | None:intergenic | 55.0% |
| GTTGCTGTAGGATGGGGTTG+AGG | + | chr8_3:6547323-6547342 | Msa1272870:intron | 55.0% | |
| AGCTGAGCAGACTCCTGATG+AGG | + | chr8_3:6547461-6547480 | Msa1272870:CDS | 55.0% | |
| CGGCTAACACGAACCTCGTT+TGG | - | chr8_3:6548461-6548480 | None:intergenic | 55.0% | |
| CAACCTCAAAGTCAAGGGCC+AGG | + | chr8_3:6548822-6548841 | Msa1272870:CDS | 55.0% | |
| TGACCTGGCCCTTGACTTTG+AGG | - | chr8_3:6548828-6548847 | None:intergenic | 55.0% | |
| ! | GACCTCATCTGGAGTCTGCT+CGG | - | chr8_3:6549169-6549188 | None:intergenic | 55.0% |
| GGCAGAGCAGTCTCCAAACG+AGG | + | chr8_3:6548445-6548464 | Msa1272870:CDS | 60.0% | |
| GTCCGAGCAGACTCCAGATG+AGG | + | chr8_3:6549164-6549183 | Msa1272870:CDS | 60.0% | |
| GGCAGAGCAGTCTCCAAACG+AGG | + | chr8_3:6548445-6548464 | Msa1272870:CDS | 60.0% | |
| GTCCGAGCAGACTCCAGATG+AGG | + | chr8_3:6549164-6549183 | Msa1272870:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 6547105 | 6549511 | 6547105 | ID=Msa1272870;Name=Msa1272870 |
| chr8_3 | mRNA | 6547105 | 6549511 | 6547105 | ID=Msa1272870-mRNA-1;Parent=Msa1272870;Name=Msa1272870-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0|0.83|0.71|0.85|1|1|7|156|223 |
| chr8_3 | exon | 6547105 | 6547107 | 6547105 | ID=Msa1272870-mRNA-1:exon:2427;Parent=Msa1272870-mRNA-1 |
| chr8_3 | exon | 6547333 | 6547482 | 6547333 | ID=Msa1272870-mRNA-1:exon:2428;Parent=Msa1272870-mRNA-1 |
| chr8_3 | exon | 6547675 | 6547755 | 6547675 | ID=Msa1272870-mRNA-1:exon:2429;Parent=Msa1272870-mRNA-1 |
| chr8_3 | exon | 6548317 | 6548466 | 6548317 | ID=Msa1272870-mRNA-1:exon:2430;Parent=Msa1272870-mRNA-1 |
| chr8_3 | exon | 6548763 | 6548843 | 6548763 | ID=Msa1272870-mRNA-1:exon:2431;Parent=Msa1272870-mRNA-1 |
| chr8_3 | exon | 6549036 | 6549185 | 6549036 | ID=Msa1272870-mRNA-1:exon:2432;Parent=Msa1272870-mRNA-1 |
| chr8_3 | exon | 6549299 | 6549511 | 6549299 | ID=Msa1272870-mRNA-1:exon:2433;Parent=Msa1272870-mRNA-1 |
| chr8_3 | CDS | 6547105 | 6547107 | 6547105 | ID=Msa1272870-mRNA-1:cds;Parent=Msa1272870-mRNA-1 |
| chr8_3 | CDS | 6547333 | 6547482 | 6547333 | ID=Msa1272870-mRNA-1:cds;Parent=Msa1272870-mRNA-1 |
| chr8_3 | CDS | 6547675 | 6547755 | 6547675 | ID=Msa1272870-mRNA-1:cds;Parent=Msa1272870-mRNA-1 |
| chr8_3 | CDS | 6548317 | 6548466 | 6548317 | ID=Msa1272870-mRNA-1:cds;Parent=Msa1272870-mRNA-1 |
| chr8_3 | CDS | 6548763 | 6548843 | 6548763 | ID=Msa1272870-mRNA-1:cds;Parent=Msa1272870-mRNA-1 |
| chr8_3 | CDS | 6549036 | 6549185 | 6549036 | ID=Msa1272870-mRNA-1:cds;Parent=Msa1272870-mRNA-1 |
| chr8_3 | CDS | 6549299 | 6549355 | 6549299 | ID=Msa1272870-mRNA-1:cds;Parent=Msa1272870-mRNA-1 |
| chr8_3 | three_prime_UTR | 6549356 | 6549511 | 6549356 | ID=Msa1272870-mRNA-1:three_prime_utr;Parent=Msa1272870-mRNA-1 |
| Gene Sequence |
| Protein sequence |
