Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1310400 | RHN38882.1 | 40.753 | 292 | 159 | 6 | 5 | 291 | 2 | 284 | 1.49e-58 | 202 |
| Msa1310400 | RHN38882.1 | 51.707 | 205 | 91 | 4 | 89 | 287 | 1 | 203 | 6.79e-50 | 179 |
| Msa1310400 | RHN38882.1 | 92.123 | 292 | 18 | 1 | 5 | 296 | 80 | 366 | 0.0 | 557 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1310400 | sp|Q9FLP6|SUMO2_ARATH | 63.636 | 77 | 28 | 0 | 139 | 215 | 12 | 88 | 2.35e-28 | 108 |
| Msa1310400 | sp|Q9FLP6|SUMO2_ARATH | 65.789 | 76 | 26 | 0 | 216 | 291 | 12 | 87 | 1.70e-24 | 98.2 |
| Msa1310400 | sp|Q9FLP6|SUMO2_ARATH | 55.000 | 80 | 32 | 1 | 58 | 137 | 12 | 87 | 3.56e-21 | 89.4 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1310400 | A0A396GB00 | 40.753 | 292 | 159 | 6 | 5 | 291 | 2 | 284 | 7.10e-59 | 202 |
| Msa1310400 | A0A396GB00 | 51.707 | 205 | 91 | 4 | 89 | 287 | 1 | 203 | 3.24e-50 | 179 |
| Msa1310400 | A0A396GB00 | 92.123 | 292 | 18 | 1 | 5 | 296 | 80 | 366 | 0.0 | 557 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004840 | Msa1310400 | 0.821813 | 3.306884e-53 | -8.615850e-47 |
| Msa0020390 | Msa1310400 | 0.804466 | 2.131671e-49 | -8.615850e-47 |
| Msa0032860 | Msa1310400 | 0.801036 | 1.087962e-48 | -8.615850e-47 |
| Msa0035150 | Msa1310400 | 0.808976 | 2.376294e-50 | -8.615850e-47 |
| Msa0038870 | Msa1310400 | 0.810177 | 1.312211e-50 | -8.615850e-47 |
| Msa0043980 | Msa1310400 | 0.812895 | 3.366980e-51 | -8.615850e-47 |
| Msa0058490 | Msa1310400 | 0.815453 | 9.174214e-52 | -8.615850e-47 |
| Msa0058510 | Msa1310400 | 0.821795 | 3.338125e-53 | -8.615850e-47 |
| Msa0065950 | Msa1310400 | 0.847417 | 1.171690e-59 | -8.615850e-47 |
| Msa0089820 | Msa1310400 | 0.813048 | 3.117031e-51 | -8.615850e-47 |
| Msa0090550 | Msa1310400 | 0.817776 | 2.767600e-52 | -8.615850e-47 |
| Msa0096980 | Msa1310400 | 0.808998 | 2.351211e-50 | -8.615850e-47 |
| Msa0104800 | Msa1310400 | 0.803243 | 3.826001e-49 | -8.615850e-47 |
| Msa0118540 | Msa1310400 | 0.803030 | 4.233737e-49 | -8.615850e-47 |
| Msa0604290 | Msa1310400 | 0.823892 | 1.084455e-53 | -8.615850e-47 |
| Msa0608160 | Msa1310400 | 0.820676 | 6.049687e-53 | -8.615850e-47 |
| Msa0609410 | Msa1310400 | -0.830017 | 3.721785e-55 | -8.615850e-47 |
| Msa0615490 | Msa1310400 | 0.831848 | 1.322535e-55 | -8.615850e-47 |
| Msa0635380 | Msa1310400 | 0.830282 | 3.206530e-55 | -8.615850e-47 |
| Msa0640940 | Msa1310400 | 0.823676 | 1.218638e-53 | -8.615850e-47 |
| Msa0642970 | Msa1310400 | 0.818931 | 1.514680e-52 | -8.615850e-47 |
| Msa0648080 | Msa1310400 | 0.819749 | 9.864547e-53 | -8.615850e-47 |
| Msa0673470 | Msa1310400 | 0.810256 | 1.261595e-50 | -8.615850e-47 |
| Msa0679360 | Msa1310400 | 0.828199 | 1.026467e-54 | -8.615850e-47 |
| Msa0682680 | Msa1310400 | 0.829060 | 6.359128e-55 | -8.615850e-47 |
| Msa0698540 | Msa1310400 | 0.822908 | 1.841622e-53 | -8.615850e-47 |
| Msa0703780 | Msa1310400 | 0.805661 | 1.198703e-49 | -8.615850e-47 |
| Msa0721280 | Msa1310400 | 0.802244 | 6.150540e-49 | -8.615850e-47 |
| Msa0722020 | Msa1310400 | 0.807378 | 5.204653e-50 | -8.615850e-47 |
| Msa0732880 | Msa1310400 | 0.826207 | 3.078375e-54 | -8.615850e-47 |
| Msa0737600 | Msa1310400 | 0.804732 | 1.875798e-49 | -8.615850e-47 |
| Msa0746210 | Msa1310400 | 0.800153 | 1.647232e-48 | -8.615850e-47 |
| Msa0747260 | Msa1310400 | 0.825930 | 3.583068e-54 | -8.615850e-47 |
| Msa0763020 | Msa1310400 | 0.810619 | 1.053382e-50 | -8.615850e-47 |
| Msa0763070 | Msa1310400 | 0.812300 | 4.544083e-51 | -8.615850e-47 |
| Msa0763890 | Msa1310400 | 0.802407 | 5.692387e-49 | -8.615850e-47 |
| Msa0773850 | Msa1310400 | 0.803124 | 4.048849e-49 | -8.615850e-47 |
| Msa0789020 | Msa1310400 | 0.801497 | 8.754976e-49 | -8.615850e-47 |
| Msa0831590 | Msa1310400 | 0.812140 | 4.924914e-51 | -8.615850e-47 |
| Msa0140110 | Msa1310400 | 0.808400 | 3.155218e-50 | -8.615850e-47 |
| Msa0145010 | Msa1310400 | 0.812795 | 3.541677e-51 | -8.615850e-47 |
| Msa0151180 | Msa1310400 | 0.804010 | 2.652516e-49 | -8.615850e-47 |
| Msa0167980 | Msa1310400 | 0.801017 | 1.097839e-48 | -8.615850e-47 |
| Msa0187230 | Msa1310400 | 0.808478 | 3.036897e-50 | -8.615850e-47 |
| Msa0189520 | Msa1310400 | 0.813907 | 2.018169e-51 | -8.615850e-47 |
| Msa0204960 | Msa1310400 | 0.807179 | 5.734806e-50 | -8.615850e-47 |
| Msa0206010 | Msa1310400 | 0.809854 | 1.540208e-50 | -8.615850e-47 |
| Msa0209500 | Msa1310400 | 0.813057 | 3.103364e-51 | -8.615850e-47 |
| Msa0212930 | Msa1310400 | 0.815171 | 1.059825e-51 | -8.615850e-47 |
| Msa0217680 | Msa1310400 | 0.806491 | 8.015507e-50 | -8.615850e-47 |
| Msa0220240 | Msa1310400 | 0.802725 | 4.895137e-49 | -8.615850e-47 |
| Msa0220440 | Msa1310400 | 0.806130 | 9.552832e-50 | -8.615850e-47 |
| Msa0229380 | Msa1310400 | 0.816633 | 5.000647e-52 | -8.615850e-47 |
| Msa1230080 | Msa1310400 | 0.918669 | 1.171480e-86 | -8.615850e-47 |
| Msa1232740 | Msa1310400 | 0.800780 | 1.227225e-48 | -8.615850e-47 |
| Msa1250530 | Msa1310400 | 0.811754 | 5.975556e-51 | -8.615850e-47 |
| Msa1256470 | Msa1310400 | 0.804949 | 1.689952e-49 | -8.615850e-47 |
| Msa1266020 | Msa1310400 | 0.802123 | 6.512364e-49 | -8.615850e-47 |
| Msa1270660 | Msa1310400 | 0.822743 | 2.012266e-53 | -8.615850e-47 |
| Msa1270730 | Msa1310400 | 0.817143 | 3.841937e-52 | -8.615850e-47 |
| Msa1272620 | Msa1310400 | 0.871365 | 7.222702e-67 | -8.615850e-47 |
| Msa1272870 | Msa1310400 | 0.922434 | 9.889348e-89 | -8.615850e-47 |
| Msa1296830 | Msa1310400 | 0.816078 | 6.656756e-52 | -8.615850e-47 |
| Msa1297530 | Msa1310400 | 0.805137 | 1.543236e-49 | -8.615850e-47 |
| Msa1298510 | Msa1310400 | 0.826894 | 2.111049e-54 | -8.615850e-47 |
| Msa1305190 | Msa1310400 | 0.803777 | 2.964591e-49 | -8.615850e-47 |
| Msa1305340 | Msa1310400 | 0.813648 | 2.300788e-51 | -8.615850e-47 |
| Msa1310400 | Msa1313320 | 0.806796 | 6.913235e-50 | -8.615850e-47 |
| Msa1310400 | Msa1337170 | 0.814744 | 1.318205e-51 | -8.615850e-47 |
| Msa1310400 | Msa1357890 | 0.803010 | 4.275005e-49 | -8.615850e-47 |
| Msa1310400 | Msa1370590 | 0.803959 | 2.717728e-49 | -8.615850e-47 |
| Msa1310400 | Msa1384100 | 0.803542 | 3.317312e-49 | -8.615850e-47 |
| Msa1310400 | Msa1397120 | 0.846182 | 2.550593e-59 | -8.615850e-47 |
| Msa1310400 | Msa1398090 | 0.811506 | 6.765692e-51 | -8.615850e-47 |
| Msa1310400 | Msa1403340 | 0.820416 | 6.939051e-53 | -8.615850e-47 |
| Msa1310400 | Msa1403890 | 0.838538 | 2.709301e-57 | -8.615850e-47 |
| Msa1310400 | Msa1407600 | 0.803244 | 3.823692e-49 | -8.615850e-47 |
| Msa1310400 | Msa1410690 | 0.809963 | 1.458925e-50 | -8.615850e-47 |
| Msa1310400 | Msa1444120 | 0.805016 | 1.636362e-49 | -8.615850e-47 |
| Msa1310400 | Msa1447890 | 0.812315 | 4.510246e-51 | -8.615850e-47 |
| Msa1310400 | Msa1448630 | 0.818921 | 1.522864e-52 | -8.615850e-47 |
| Msa1310400 | Msa1458610 | 0.832806 | 7.662454e-56 | -8.615850e-47 |
| Msa1310400 | Msa1462290 | 0.804644 | 1.956392e-49 | -8.615850e-47 |
| Msa0376910 | Msa1310400 | 0.839344 | 1.676149e-57 | -8.615850e-47 |
| Msa0382370 | Msa1310400 | 0.814542 | 1.460931e-51 | -8.615850e-47 |
| Msa0385500 | Msa1310400 | 0.808995 | 2.354084e-50 | -8.615850e-47 |
| Msa0391690 | Msa1310400 | 0.821578 | 3.748512e-53 | -8.615850e-47 |
| Msa0394340 | Msa1310400 | 0.810528 | 1.101992e-50 | -8.615850e-47 |
| Msa0401560 | Msa1310400 | 0.819032 | 1.436582e-52 | -8.615850e-47 |
| Msa0412840 | Msa1310400 | 0.826843 | 2.172049e-54 | -8.615850e-47 |
| Msa0415430 | Msa1310400 | 0.802486 | 5.484229e-49 | -8.615850e-47 |
| Msa0433360 | Msa1310400 | 0.801513 | 8.689251e-49 | -8.615850e-47 |
| Msa0442200 | Msa1310400 | 0.831454 | 1.654429e-55 | -8.615850e-47 |
| Msa0453350 | Msa1310400 | 0.803222 | 3.864119e-49 | -8.615850e-47 |
| Msa0457510 | Msa1310400 | 0.804740 | 1.868268e-49 | -8.615850e-47 |
| Msa0471900 | Msa1310400 | 0.841082 | 5.896777e-58 | -8.615850e-47 |
| Msa0994370 | Msa1310400 | 0.837930 | 3.885376e-57 | -8.615850e-47 |
| Msa1023180 | Msa1310400 | 0.823583 | 1.281050e-53 | -8.615850e-47 |
| Msa1034150 | Msa1310400 | 0.829455 | 5.099302e-55 | -8.615850e-47 |
| Msa1037520 | Msa1310400 | 0.808862 | 2.513783e-50 | -8.615850e-47 |
| Msa1043050 | Msa1310400 | 0.825572 | 4.358064e-54 | -8.615850e-47 |
| Msa1058750 | Msa1310400 | 0.810003 | 1.430804e-50 | -8.615850e-47 |
| Msa1068870 | Msa1310400 | 0.811379 | 7.209901e-51 | -8.615850e-47 |
| Msa1072900 | Msa1310400 | 0.821421 | 4.074976e-53 | -8.615850e-47 |
| Msa1090260 | Msa1310400 | 0.808286 | 3.337358e-50 | -8.615850e-47 |
| Msa1091940 | Msa1310400 | 0.811132 | 8.155568e-51 | -8.615850e-47 |
| Msa0253200 | Msa1310400 | 0.812456 | 4.200251e-51 | -8.615850e-47 |
| Msa0255930 | Msa1310400 | 0.814237 | 1.706654e-51 | -8.615850e-47 |
| Msa0257490 | Msa1310400 | 0.833446 | 5.307926e-56 | -8.615850e-47 |
| Msa0261550 | Msa1310400 | 0.829054 | 6.378331e-55 | -8.615850e-47 |
| Msa0261720 | Msa1310400 | 0.816185 | 6.300805e-52 | -8.615850e-47 |
| Msa0271360 | Msa1310400 | 0.815452 | 9.180808e-52 | -8.615850e-47 |
| Msa0281530 | Msa1310400 | 0.816974 | 4.192609e-52 | -8.615850e-47 |
| Msa0292030 | Msa1310400 | 0.814111 | 1.819355e-51 | -8.615850e-47 |
| Msa0296790 | Msa1310400 | 0.826788 | 2.238392e-54 | -8.615850e-47 |
| Msa0309880 | Msa1310400 | 0.808909 | 2.456417e-50 | -8.615850e-47 |
| Msa0311730 | Msa1310400 | 0.802827 | 4.663157e-49 | -8.615850e-47 |
| Msa0320590 | Msa1310400 | 0.808519 | 2.976877e-50 | -8.615850e-47 |
| Msa0326110 | Msa1310400 | 0.803113 | 4.070880e-49 | -8.615850e-47 |
| Msa0330310 | Msa1310400 | 0.820020 | 8.550306e-53 | -8.615850e-47 |
| Msa0336320 | Msa1310400 | 0.811183 | 7.951151e-51 | -8.615850e-47 |
| Msa0337060 | Msa1310400 | 0.800697 | 1.276170e-48 | -8.615850e-47 |
| Msa0343850 | Msa1310400 | 0.833015 | 6.797795e-56 | -8.615850e-47 |
| Msa0346430 | Msa1310400 | 0.821341 | 4.250043e-53 | -8.615850e-47 |
| Msa0347610 | Msa1310400 | 0.801893 | 7.262276e-49 | -8.615850e-47 |
| Msa0353540 | Msa1310400 | 0.800837 | 1.194894e-48 | -8.615850e-47 |
| Msa0363790 | Msa1310400 | 0.809233 | 2.093880e-50 | -8.615850e-47 |
| Msa1129550 | Msa1310400 | 0.821120 | 4.780100e-53 | -8.615850e-47 |
| Msa1129730 | Msa1310400 | 0.819281 | 1.261263e-52 | -8.615850e-47 |
| Msa1150710 | Msa1310400 | 0.828515 | 8.615261e-55 | -8.615850e-47 |
| Msa1169550 | Msa1310400 | 0.825723 | 4.012731e-54 | -8.615850e-47 |
| Msa1174040 | Msa1310400 | 0.801340 | 9.431474e-49 | -8.615850e-47 |
| Msa1186360 | Msa1310400 | 0.813887 | 2.038570e-51 | -8.615850e-47 |
| Msa1190930 | Msa1310400 | 0.819453 | 1.152352e-52 | -8.615850e-47 |
| Msa1205590 | Msa1310400 | 0.802091 | 6.614033e-49 | -8.615850e-47 |
| Msa1210020 | Msa1310400 | 0.822496 | 2.296386e-53 | -8.615850e-47 |
| Msa1212950 | Msa1310400 | 0.800654 | 1.302109e-48 | -8.615850e-47 |
| Msa0482940 | Msa1310400 | 0.805794 | 1.123708e-49 | -8.615850e-47 |
| Msa0489610 | Msa1310400 | 0.815274 | 1.005438e-51 | -8.615850e-47 |
| Msa0510840 | Msa1310400 | 0.803972 | 2.700205e-49 | -8.615850e-47 |
| Msa0521010 | Msa1310400 | 0.801844 | 7.432211e-49 | -8.615850e-47 |
| Msa0542290 | Msa1310400 | 0.837219 | 5.913882e-57 | -8.615850e-47 |
| Msa0542560 | Msa1310400 | 0.808987 | 2.363812e-50 | -8.615850e-47 |
| Msa0544840 | Msa1310400 | 0.804096 | 2.545079e-49 | -8.615850e-47 |
| Msa0545080 | Msa1310400 | 0.802223 | 6.213071e-49 | -8.615850e-47 |
| Msa0547160 | Msa1310400 | 0.829540 | 4.862554e-55 | -8.615850e-47 |
| Msa0549780 | Msa1310400 | 0.805012 | 1.639558e-49 | -8.615850e-47 |
| Msa0556060 | Msa1310400 | 0.812778 | 3.573010e-51 | -8.615850e-47 |
| Msa0557480 | Msa1310400 | 0.824255 | 8.913881e-54 | -8.615850e-47 |
| Msa0600080 | Msa1310400 | 0.801217 | 9.993749e-49 | -8.615850e-47 |
| Msa0600450 | Msa1310400 | 0.825788 | 3.872725e-54 | -8.615850e-47 |
| Msa0861130 | Msa1310400 | 0.803582 | 3.254633e-49 | -8.615850e-47 |
| Msa0869120 | Msa1310400 | 0.809954 | 1.465370e-50 | -8.615850e-47 |
| Msa0872440 | Msa1310400 | 0.810589 | 1.069219e-50 | -8.615850e-47 |
| Msa0894710 | Msa1310400 | 0.800373 | 1.485553e-48 | -8.615850e-47 |
| Msa0927260 | Msa1310400 | 0.803741 | 3.015834e-49 | -8.615850e-47 |
| Msa0969370 | Msa1310400 | 0.809815 | 1.570452e-50 | -8.615850e-47 |
| Msa0969810 | Msa1310400 | 0.805244 | 1.465823e-49 | -8.615850e-47 |
| Msa0974950 | Msa1310400 | 0.804151 | 2.478482e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1310400 | MtrunA17_Chr8g0337911 | 92.123 | 292 | 18 | 1 | 5 | 296 | 80 | 366 | 0.0 | 557 |
| Msa1310400 | MtrunA17_Chr8g0337911 | 40.753 | 292 | 159 | 6 | 5 | 291 | 2 | 284 | 1.37e-62 | 202 |
| Msa1310400 | MtrunA17_Chr8g0337911 | 51.707 | 205 | 91 | 4 | 89 | 287 | 1 | 203 | 6.24e-54 | 179 |
| Msa1310400 | MtrunA17_Chr8g0337921 | 40.175 | 229 | 112 | 3 | 67 | 293 | 29 | 234 | 2.07e-55 | 179 |
| Msa1310400 | MtrunA17_Chr3g0099761 | 62.162 | 74 | 28 | 0 | 142 | 215 | 21 | 94 | 3.73e-28 | 104 |
| Msa1310400 | MtrunA17_Chr3g0099761 | 66.197 | 71 | 24 | 0 | 221 | 291 | 23 | 93 | 1.89e-24 | 94.7 |
| Msa1310400 | MtrunA17_Chr3g0099761 | 49.438 | 89 | 41 | 1 | 49 | 137 | 9 | 93 | 2.52e-21 | 86.7 |
| Msa1310400 | MtrunA17_Chr3g0099771 | 60.811 | 74 | 29 | 0 | 142 | 215 | 21 | 94 | 7.58e-28 | 103 |
| Msa1310400 | MtrunA17_Chr3g0099771 | 66.197 | 71 | 24 | 0 | 221 | 291 | 23 | 93 | 1.53e-24 | 95.1 |
| Msa1310400 | MtrunA17_Chr3g0099771 | 48.315 | 89 | 42 | 1 | 49 | 137 | 9 | 93 | 1.39e-20 | 84.7 |
| Msa1310400 | MtrunA17_Chr3g0099841 | 43.478 | 92 | 34 | 2 | 205 | 279 | 1 | 91 | 1.82e-14 | 67.8 |
| Msa1310400 | MtrunA17_Chr3g0099841 | 54.902 | 51 | 23 | 0 | 75 | 125 | 41 | 91 | 2.10e-11 | 59.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1310400 | AT5G55160.1 | 63.636 | 77 | 28 | 0 | 139 | 215 | 12 | 88 | 2.38e-29 | 108 |
| Msa1310400 | AT5G55160.1 | 65.789 | 76 | 26 | 0 | 216 | 291 | 12 | 87 | 1.73e-25 | 98.2 |
| Msa1310400 | AT5G55160.1 | 55.000 | 80 | 32 | 1 | 58 | 137 | 12 | 87 | 3.62e-22 | 89.4 |
| Msa1310400 | AT4G26840.1 | 62.162 | 74 | 28 | 0 | 142 | 215 | 16 | 89 | 2.07e-27 | 102 |
| Msa1310400 | AT4G26840.1 | 67.606 | 71 | 23 | 0 | 221 | 291 | 18 | 88 | 1.86e-25 | 97.8 |
| Msa1310400 | AT4G26840.1 | 51.724 | 87 | 38 | 1 | 51 | 137 | 6 | 88 | 1.28e-21 | 87.8 |
| Msa1310400 | AT5G55160.2 | 54.444 | 90 | 28 | 1 | 139 | 215 | 12 | 101 | 1.18e-25 | 99.0 |
| Msa1310400 | AT5G55160.2 | 56.180 | 89 | 26 | 1 | 216 | 291 | 12 | 100 | 2.36e-22 | 90.1 |
| Msa1310400 | AT5G55160.2 | 49.438 | 89 | 36 | 1 | 58 | 137 | 12 | 100 | 5.71e-20 | 84.0 |
| Msa1310400 | AT5G55170.1 | 43.820 | 89 | 46 | 1 | 47 | 135 | 2 | 86 | 1.93e-14 | 68.6 |
| Msa1310400 | AT5G55170.1 | 43.243 | 74 | 42 | 0 | 139 | 212 | 13 | 86 | 2.86e-14 | 68.2 |
| Msa1310400 | AT5G55170.1 | 51.351 | 74 | 36 | 0 | 216 | 289 | 13 | 86 | 6.43e-14 | 67.4 |
| Msa1310400 | AT2G32765.1 | 37.895 | 95 | 50 | 1 | 208 | 293 | 6 | 100 | 2.79e-14 | 68.2 |
| Msa1310400 | AT2G32765.1 | 41.176 | 68 | 40 | 0 | 143 | 210 | 27 | 94 | 5.72e-13 | 64.7 |
| Msa1310400 | AT2G32765.1 | 40.244 | 82 | 47 | 1 | 56 | 137 | 19 | 98 | 3.58e-11 | 59.7 |
| Msa1310400 | AT5G55170.3 | 43.820 | 89 | 42 | 1 | 47 | 135 | 2 | 82 | 2.06e-13 | 65.9 |
| Msa1310400 | AT5G55170.3 | 40.000 | 65 | 39 | 0 | 148 | 212 | 18 | 82 | 7.24e-11 | 58.9 |
| Msa1310400 | AT5G55170.3 | 53.333 | 60 | 28 | 0 | 230 | 289 | 23 | 82 | 8.24e-11 | 58.5 |
Find 54 sgRNAs with CRISPR-Local
Find 201 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGACATTGTTTGGATATTAA+TGG | 0.180647 | 8_4:+7026552 | Msa1310400:CDS |
| TTTGATAGCAATGTAAATTA+TGG | 0.212713 | 8_4:+7028633 | Msa1310400:three_prime_UTR |
| GGAGTTGCATTTCTGTTTAA+TGG | 0.233057 | 8_4:+7028300 | Msa1310400:CDS |
| TTATGGTTATCGACATTGTT+TGG | 0.343543 | 8_4:+7026542 | Msa1310400:CDS |
| GAGCATGGCTACTCGTAAAA+AGG | 0.360339 | 8_4:+7025076 | None:intergenic |
| TGACCTGGCCCTTGACTTTG+AGG | 0.361593 | 8_4:-7027996 | None:intergenic |
| GAGTTGCATTTCTGTTTAAT+GGG | 0.373760 | 8_4:+7028301 | Msa1310400:CDS |
| GACTTTAGTGCTACGGTAAG+TGG | 0.386161 | 8_4:+7028526 | Msa1310400:exon |
| CTAGAGACACAGACCTCATC+TGG | 0.398020 | 8_4:-7028348 | None:intergenic |
| GTTTGATGGCAATGGTCTCC+AGG | 0.400873 | 8_4:+7025610 | Msa1310400:CDS |
| TCGGTGGATTTCAATTCAAT+TGG | 0.407448 | 8_4:+7027566 | Msa1310400:CDS |
| GTTGATGTAGGATGGGGTTG+AGG | 0.413479 | 8_4:+7026470 | Msa1310400:intron |
| AAACTTTGTCCTTGATATTG+AGG | 0.419446 | 8_4:-7025832 | None:intergenic |
| TGTCCTTGATATTGAGGTCC+AGG | 0.423022 | 8_4:-7025826 | None:intergenic |
| TGGGAATAATGATAATGAAA+TGG | 0.437567 | 8_4:+7025763 | Msa1310400:CDS |
| CGGCTAACACGAACCTCGTT+TGG | 0.440260 | 8_4:-7027629 | None:intergenic |
| CAACAAACACAAACCTCATC+AGG | 0.453695 | 8_4:-7026621 | None:intergenic |
| CTTCAGATGCACATGGAAGA+TGG | 0.456997 | 8_4:+7025743 | Msa1310400:intron |
| GTTGGGTTTGAAGCTTCATT+CGG | 0.457836 | 8_4:+7028207 | Msa1310400:CDS |
| TTTCTTGTAGCTGCAAATGA+TGG | 0.476318 | 8_4:+7026816 | Msa1310400:intron |
| GGGAGACCATTGTCCAGATA+AGG | 0.491253 | 8_4:+7025631 | Msa1310400:CDS |
| TTATATACAGCCGTTACGGC+TGG | 0.502753 | 8_4:+7028608 | Msa1310400:three_prime_UTR |
| ATATTTGATGCAGCTGGGAA+TGG | 0.503354 | 8_4:+7028457 | Msa1310400:intron |
| TATATTATATACAGCCGTTA+CGG | 0.506336 | 8_4:+7028604 | Msa1310400:three_prime_UTR |
| TTCAGATGCACATGGAAGAT+GGG | 0.520286 | 8_4:+7025744 | Msa1310400:intron |
| CTATCTTCTATGATCAGAGC+AGG | 0.522009 | 8_4:+7027965 | Msa1310400:CDS |
| ATGCAGCTGGGAATGGAAGA+TGG | 0.524131 | 8_4:+7028464 | Msa1310400:intron |
| GACCTCATCTGGAGTCTGCT+CGG | 0.525073 | 8_4:-7028337 | None:intergenic |
| GTGTTTAGACTTTAGTGCTA+CGG | 0.525831 | 8_4:+7028519 | Msa1310400:exon |
| GAAACTGAAGGTCAAGTGCC+AGG | 0.538121 | 8_4:+7026885 | Msa1310400:CDS |
| TATCTGGACAATGGTCTCCC+TGG | 0.545542 | 8_4:-7025628 | None:intergenic |
| CTATCAAAGTCCAGCCGTAA+CGG | 0.546953 | 8_4:-7028618 | None:intergenic |
| CAACCTGGACCTCAATATCA+AGG | 0.560795 | 8_4:+7025823 | Msa1310400:CDS |
| GTTTAATGAGCATCACGTGC+GGG | 0.561035 | 8_4:+7027595 | Msa1310400:CDS |
| CTGCAGATGCAAATGGTGGA+TGG | 0.564540 | 8_4:+7027928 | Msa1310400:intron |
| GCGCATCAACCTCAAAGTCA+AGG | 0.564992 | 8_4:+7027987 | Msa1310400:CDS |
| CAACCTCAAAGTCAAGGGCC+AGG | 0.566066 | 8_4:+7027993 | Msa1310400:CDS |
| GTACTAAATACTAGAGACAT+TGG | 0.571916 | 8_4:-7028578 | None:intergenic |
| CGCATCAACCTCAAAGTCAA+GGG | 0.584028 | 8_4:+7027988 | Msa1310400:CDS |
| TTGTAGCTGCAAATGATGGA+AGG | 0.589932 | 8_4:+7026820 | Msa1310400:intron |
| TGCTTACTGTAATCATCACT+CGG | 0.593563 | 8_4:+7027547 | Msa1310400:CDS |
| TTTGATGGCAATGGTCTCCA+GGG | 0.609879 | 8_4:+7025611 | Msa1310400:CDS |
| TGCACACATTAAGCTCAACC+TGG | 0.617593 | 8_4:+7025808 | Msa1310400:CDS |
| CACAAACCTTATCTGGACAA+TGG | 0.622681 | 8_4:-7025637 | None:intergenic |
| TGTTTAATGAGCATCACGTG+CGG | 0.628554 | 8_4:+7027594 | Msa1310400:CDS |
| AGCTGAGCAGACTCCTGATG+AGG | 0.630603 | 8_4:+7026608 | Msa1310400:CDS |
| AATTGCACGCATGAAACTGA+AGG | 0.631327 | 8_4:+7026873 | Msa1310400:CDS |
| GTCCGAGCAGACTCCAGATG+AGG | 0.644410 | 8_4:+7028335 | Msa1310400:CDS |
| GGCAGAGCAGTCTCCAAACG+AGG | 0.646506 | 8_4:+7027616 | Msa1310400:CDS |
| TTTGCTGCAGATGCAAATGG+TGG | 0.657290 | 8_4:+7027924 | Msa1310400:intron |
| TGCACTCTGATCATAAGAGA+TGG | 0.684429 | 8_4:-7025789 | None:intergenic |
| TATTTGGCTTCAGATGCACA+TGG | 0.697063 | 8_4:+7025736 | Msa1310400:intron |
| TTATTGTGATGAGCACTCTG+TGG | 0.727654 | 8_4:+7025562 | Msa1310400:CDS |
| TTACTGTAATCATCACTCGG+TGG | 0.782333 | 8_4:+7027550 | Msa1310400:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTTTTAAAATGTTGTA+TGG | + | chr8_4:7025372-7025391 | Msa1310400:intron | 10.0% |
| !!! | TTTTTTATTTTGTTTTGTAA+AGG | - | chr8_4:7027147-7027166 | None:intergenic | 10.0% |
| !!! | ATCAATTTTTTTTTTTTTGA+AGG | + | chr8_4:7028656-7028675 | Msa1310400:three_prime_UTR | 10.0% |
| !! | AAAAATTGAAAATAAGAGTT+TGG | - | chr8_4:7025251-7025270 | None:intergenic | 15.0% |
| !! | TATATAATATAAACATGAGA+GGG | - | chr8_4:7025317-7025336 | None:intergenic | 15.0% |
| !! | TTATATAATATAAACATGAG+AGG | - | chr8_4:7025318-7025337 | None:intergenic | 15.0% |
| !! | AGAATTTAAACAACAATAAA+AGG | - | chr8_4:7026775-7026794 | None:intergenic | 15.0% |
| !!! | TTTATTGTTGTTTAAATTCT+TGG | + | chr8_4:7026775-7026794 | Msa1310400:intron | 15.0% |
| !! | TGATAAAATGAAATCAAAAT+AGG | + | chr8_4:7027425-7027444 | Msa1310400:intron | 15.0% |
| !!! | TTTTTAAAATGTTGTATGGT+CGG | + | chr8_4:7025376-7025395 | Msa1310400:intron | 20.0% |
| !!! | ATCATAACTCTATTACTTTT+TGG | + | chr8_4:7025588-7025607 | Msa1310400:CDS | 20.0% |
| !! | CATAAAAACCAATAACTATT+TGG | - | chr8_4:7025705-7025724 | None:intergenic | 20.0% |
| !! | TTATGACTTCCTAATATATT+TGG | + | chr8_4:7025720-7025739 | Msa1310400:intron | 20.0% |
| !!! | TCAATTATGTTATTTTCTCA+AGG | - | chr8_4:7025935-7025954 | None:intergenic | 20.0% |
| !! | ATAGAATGATTATTGATCTA+AGG | - | chr8_4:7026128-7026147 | None:intergenic | 20.0% |
| !! | ATTATAGCTTATAATCTACT+AGG | + | chr8_4:7026391-7026410 | Msa1310400:intron | 20.0% |
| !!! | ATATGATAGTTTGGTAATTT+TGG | + | chr8_4:7026448-7026467 | Msa1310400:intron | 20.0% |
| !!! | TTTGGTTTTTTTAAGTAGTT+TGG | + | chr8_4:7027288-7027307 | Msa1310400:intron | 20.0% |
| !!! | TTTTTAAGTAGTTTGGTTTT+TGG | + | chr8_4:7027295-7027314 | Msa1310400:intron | 20.0% |
| !!! | TATAGTCTTGTTTATATTCT+TGG | + | chr8_4:7027881-7027900 | Msa1310400:intron | 20.0% |
| !!! | TTTGATAGCAATGTAAATTA+TGG | + | chr8_4:7028633-7028652 | Msa1310400:three_prime_UTR | 20.0% |
| !!! | TTTTAAAATGTTGTATGGTC+GGG | + | chr8_4:7025377-7025396 | Msa1310400:intron | 25.0% |
| !!! | TCTATTACTTTTTGGTTTGA+TGG | + | chr8_4:7025596-7025615 | Msa1310400:CDS | 25.0% |
| ! | ATAAAAACACAAACCTTATC+TGG | - | chr8_4:7025647-7025666 | None:intergenic | 25.0% |
| ! | CAATTGATCCAAATAGTTAT+TGG | + | chr8_4:7025694-7025713 | Msa1310400:intron | 25.0% |
| !! | TGGGAATAATGATAATGAAA+TGG | + | chr8_4:7025763-7025782 | Msa1310400:CDS | 25.0% |
| ! | TTTCTGTAGCTAAAAATTGA+AGG | - | chr8_4:7025865-7025884 | None:intergenic | 25.0% |
| !!! | TTATTTTCTCAAGGTATTAC+CGG | - | chr8_4:7025926-7025945 | None:intergenic | 25.0% |
| !!! | CACTTTTGATTGAACTTAAA+GGG | - | chr8_4:7025982-7026001 | None:intergenic | 25.0% |
| !!! | ACACTTTTGATTGAACTTAA+AGG | - | chr8_4:7025983-7026002 | None:intergenic | 25.0% |
| ! | AATGTTACTCTGTAAATTCA+GGG | - | chr8_4:7026094-7026113 | None:intergenic | 25.0% |
| ! | TAATGTTACTCTGTAAATTC+AGG | - | chr8_4:7026095-7026114 | None:intergenic | 25.0% |
| ! | ATTTACAGAGTAACATTAGT+TGG | + | chr8_4:7026097-7026116 | Msa1310400:intron | 25.0% |
| ! | AATTACATTATGCAATAGCA+GGG | - | chr8_4:7026328-7026347 | None:intergenic | 25.0% |
| ! | AAATTACATTATGCAATAGC+AGG | - | chr8_4:7026329-7026348 | None:intergenic | 25.0% |
| ! | AAAAAGCTTATGGATGTTTA+TGG | + | chr8_4:7026525-7026544 | Msa1310400:CDS | 25.0% |
| !! | TACTTTTGTATGTGTGATTT+CGG | + | chr8_4:7026661-7026680 | Msa1310400:intron | 25.0% |
| ! | AAGAGATAAAATAACAGTTG+TGG | + | chr8_4:7026705-7026724 | Msa1310400:intron | 25.0% |
| ! | AGAGATAAAATAACAGTTGT+GGG | + | chr8_4:7026706-7026725 | Msa1310400:intron | 25.0% |
| ! | AAACCTAATCAAACTGTTAA+TGG | + | chr8_4:7027053-7027072 | Msa1310400:intron | 25.0% |
| ! | GTAAATTATCCTTCAAAGTT+TGG | + | chr8_4:7027225-7027244 | Msa1310400:intron | 25.0% |
| !! | TTTGATTTAACAGTTGAGTT+TGG | + | chr8_4:7027263-7027282 | Msa1310400:intron | 25.0% |
| ! | CTAATTAATACTATCAGCTA+AGG | + | chr8_4:7027358-7027377 | Msa1310400:intron | 25.0% |
| !!! | ATATACTGATTTGTGGTTTT+TGG | + | chr8_4:7027456-7027475 | Msa1310400:intron | 25.0% |
| !!! | TTTTCAATTCTTAGCCTTTT+TGG | + | chr8_4:7028026-7028045 | Msa1310400:intron | 25.0% |
| ! | TATGCTAATTTGGATAATGT+AGG | + | chr8_4:7028185-7028204 | Msa1310400:intron | 25.0% |
| ! | TAATTTGGATAATGTAGGTT+GGG | + | chr8_4:7028190-7028209 | Msa1310400:intron | 25.0% |
| !!! | TTGTCGATATTGTTTTGATT+TGG | + | chr8_4:7028275-7028294 | Msa1310400:CDS | 25.0% |
| ! | GTGAAATAATGAACATATGT+TGG | - | chr8_4:7028387-7028406 | None:intergenic | 25.0% |
| ! | AAATTATATTTGATGCAGCT+GGG | + | chr8_4:7028452-7028471 | Msa1310400:intron | 25.0% |
| !!! | AAGTGGAATTAGTTTTTTGT+TGG | + | chr8_4:7028543-7028562 | Msa1310400:three_prime_UTR | 25.0% |
| !!! | AGTGGAATTAGTTTTTTGTT+GGG | + | chr8_4:7028544-7028563 | Msa1310400:three_prime_UTR | 25.0% |
| !!! | TTAGTTTTTTGTTGGGATAT+AGG | + | chr8_4:7028551-7028570 | Msa1310400:three_prime_UTR | 25.0% |
| ! | TATATTATATACAGCCGTTA+CGG | + | chr8_4:7028604-7028623 | Msa1310400:three_prime_UTR | 25.0% |
| GATTGTGAGCGAAAAAATAT+GGG | + | chr8_4:7025160-7025179 | Msa1310400:intron | 30.0% | |
| ! | CATCTGAAGCCAAATATATT+AGG | - | chr8_4:7025732-7025751 | None:intergenic | 30.0% |
| AAACTTTGTCCTTGATATTG+AGG | - | chr8_4:7025835-7025854 | None:intergenic | 30.0% | |
| ATGTTACTCTGTAAATTCAG+GGG | - | chr8_4:7026093-7026112 | None:intergenic | 30.0% | |
| TCCTGGTTAGAAAATTCATT+CGG | - | chr8_4:7026186-7026205 | None:intergenic | 30.0% | |
| ! | TTGATAACAAGGTAAAATCC+TGG | - | chr8_4:7026203-7026222 | None:intergenic | 30.0% |
| ! | CCTCTTGATATTTGATAACA+AGG | - | chr8_4:7026214-7026233 | None:intergenic | 30.0% |
| ! | CCTTGTTATCAAATATCAAG+AGG | + | chr8_4:7026211-7026230 | Msa1310400:intron | 30.0% |
| AGCTAAATACTTTACCTCAT+TGG | + | chr8_4:7026271-7026290 | Msa1310400:intron | 30.0% | |
| TAGCTCAATGTTGTAAATAG+CGG | + | chr8_4:7026297-7026316 | Msa1310400:intron | 30.0% | |
| ATACGTCTCATATTAACTTC+AGG | - | chr8_4:7026430-7026449 | None:intergenic | 30.0% | |
| ATGAGACGTATATGATAGTT+TGG | + | chr8_4:7026439-7026458 | Msa1310400:intron | 30.0% | |
| !!! | TTGGTAATTTTGGTTGATGT+AGG | + | chr8_4:7026458-7026477 | Msa1310400:intron | 30.0% |
| !!! | TAATTTTGGTTGATGTAGGA+TGG | + | chr8_4:7026462-7026481 | Msa1310400:intron | 30.0% |
| !!! | AATTTTGGTTGATGTAGGAT+GGG | + | chr8_4:7026463-7026482 | Msa1310400:intron | 30.0% |
| !!! | ACATCCATAAGCTTTTTCAA+TGG | - | chr8_4:7026522-7026541 | None:intergenic | 30.0% |
| TTATGGTTATCGACATTGTT+TGG | + | chr8_4:7026542-7026561 | Msa1310400:CDS | 30.0% | |
| CGACATTGTTTGGATATTAA+TGG | + | chr8_4:7026552-7026571 | Msa1310400:CDS | 30.0% | |
| !! | TTGTAGTTTTGCTCTTATGT+TGG | + | chr8_4:7026928-7026947 | Msa1310400:intron | 30.0% |
| !! | ATTGAGAGTAAGAGTATTCA+TGG | + | chr8_4:7026978-7026997 | Msa1310400:intron | 30.0% |
| GAACCATTAACAGTTTGATT+AGG | - | chr8_4:7027059-7027078 | None:intergenic | 30.0% | |
| !!! | CCTTCAAAGTTTGGTTTTTT+CGG | + | chr8_4:7027234-7027253 | Msa1310400:intron | 30.0% |
| !!! | CTTCAAAGTTTGGTTTTTTC+GGG | + | chr8_4:7027235-7027254 | Msa1310400:intron | 30.0% |
| !!! | TAACAGTTGAGTTTGGTTTT+TGG | + | chr8_4:7027270-7027289 | Msa1310400:intron | 30.0% |
| GATAGTATTAATTAGTCCAC+AGG | - | chr8_4:7027353-7027372 | None:intergenic | 30.0% | |
| ! | AGAGACATAAAAGTACAATC+AGG | - | chr8_4:7027393-7027412 | None:intergenic | 30.0% |
| !! | CAGAGATATATACTGATTTG+TGG | + | chr8_4:7027449-7027468 | Msa1310400:intron | 30.0% |
| ! | TCGACAACATTTTGTACTAA+TGG | - | chr8_4:7027755-7027774 | None:intergenic | 30.0% |
| TACAAAATGTTGTCGAATAG+TGG | + | chr8_4:7027759-7027778 | Msa1310400:intron | 30.0% | |
| AAACCAAATGTTCTCAATCA+CGG | - | chr8_4:7027847-7027866 | None:intergenic | 30.0% | |
| ATTGAAAAAATAGACTGACC+TGG | - | chr8_4:7028014-7028033 | None:intergenic | 30.0% | |
| ATGAGTGGTATATGCTAATT+TGG | + | chr8_4:7028175-7028194 | Msa1310400:intron | 30.0% | |
| CTAATTTGGATAATGTAGGT+TGG | + | chr8_4:7028189-7028208 | Msa1310400:intron | 30.0% | |
| CACTCAATTGAAAAAGCTTA+TGG | + | chr8_4:7028242-7028261 | Msa1310400:CDS | 30.0% | |
| !!! | CGATATTGTTTTGATTTGGA+CGG | + | chr8_4:7028279-7028298 | Msa1310400:CDS | 30.0% |
| GAGTTGCATTTCTGTTTAAT+GGG | + | chr8_4:7028301-7028320 | Msa1310400:CDS | 30.0% | |
| GAAATTATATTTGATGCAGC+TGG | + | chr8_4:7028451-7028470 | Msa1310400:intron | 30.0% | |
| GTACTAAATACTAGAGACAT+TGG | - | chr8_4:7028581-7028600 | None:intergenic | 30.0% | |
| AAAGGTGATGTATCCGTATT+AGG | + | chr8_4:7025094-7025113 | Msa1310400:intron | 35.0% | |
| AAGGTGATGTATCCGTATTA+GGG | + | chr8_4:7025095-7025114 | Msa1310400:intron | 35.0% | |
| CGATTGTGAGCGAAAAAATA+TGG | + | chr8_4:7025159-7025178 | Msa1310400:intron | 35.0% | |
| TCAACTGAAAAAGCTAGTGA+AGG | + | chr8_4:7025538-7025557 | Msa1310400:intron | 35.0% | |
| !!! | ACTTTTTGGTTTGATGGCAA+TGG | + | chr8_4:7025602-7025621 | Msa1310400:CDS | 35.0% |
| AGAAACACTTACACATACAC+CGG | + | chr8_4:7025880-7025899 | Msa1310400:intron | 35.0% | |
| ! | ACCGAATGAATTTTCTAACC+AGG | + | chr8_4:7026182-7026201 | Msa1310400:intron | 35.0% |
| ACATTGAGCTATAACCAATG+AGG | - | chr8_4:7026288-7026307 | None:intergenic | 35.0% | |
| TAGAGAACGCAAAACAATAG+CGG | - | chr8_4:7026359-7026378 | None:intergenic | 35.0% | |
| !!! | ATTTTGGTTGATGTAGGATG+GGG | + | chr8_4:7026464-7026483 | Msa1310400:intron | 35.0% |
| CACTCCATTGAAAAAGCTTA+TGG | + | chr8_4:7026515-7026534 | Msa1310400:CDS | 35.0% | |
| !!! | GGAGTTGCTTTTCTGTTTAA+TGG | + | chr8_4:7026573-7026592 | Msa1310400:CDS | 35.0% |
| TTTCTTGTAGCTGCAAATGA+TGG | + | chr8_4:7026816-7026835 | Msa1310400:intron | 35.0% | |
| ! | TTGATTAGGTTTTACCGAAC+TGG | - | chr8_4:7027045-7027064 | None:intergenic | 35.0% |
| !!! | TATGTGGTTTTGTACCGAAA+CGG | + | chr8_4:7027116-7027135 | Msa1310400:intron | 35.0% |
| TTGTAAAGGTAGTTCCGTTT+CGG | - | chr8_4:7027133-7027152 | None:intergenic | 35.0% | |
| !! | CTGAACCATTCAGTTGTTTT+GGG | - | chr8_4:7027197-7027216 | None:intergenic | 35.0% |
| ! | ACTGAACCATTCAGTTGTTT+TGG | - | chr8_4:7027198-7027217 | None:intergenic | 35.0% |
| CCGAAAAAACCAAACTTTGA+AGG | - | chr8_4:7027237-7027256 | None:intergenic | 35.0% | |
| !! | TTGTGGTTTTTGGATGTTGT+AGG | + | chr8_4:7027466-7027485 | Msa1310400:intron | 35.0% |
| TGCTTACTGTAATCATCACT+CGG | + | chr8_4:7027547-7027566 | Msa1310400:CDS | 35.0% | |
| ! | TCGGTGGATTTCAATTCAAT+TGG | + | chr8_4:7027566-7027585 | Msa1310400:CDS | 35.0% |
| GGTAAACAATGAAAAGATGC+CGG | - | chr8_4:7027652-7027671 | None:intergenic | 35.0% | |
| CTGTTGAATATCAGCTATAG+AGG | + | chr8_4:7027679-7027698 | Msa1310400:intron | 35.0% | |
| AATCCGTGATTGAGAACATT+TGG | + | chr8_4:7027841-7027860 | Msa1310400:intron | 35.0% | |
| !! | TAGCCTTTTTGGTCTAAAGT+TGG | + | chr8_4:7028037-7028056 | Msa1310400:intron | 35.0% |
| GAACCAACTTTAGACCAAAA+AGG | - | chr8_4:7028043-7028062 | None:intergenic | 35.0% | |
| TGTAACACTAGTTCATGATG+TGG | + | chr8_4:7028084-7028103 | Msa1310400:intron | 35.0% | |
| ! | GAAATATTACAGCTTTGGCA+GGG | - | chr8_4:7028117-7028136 | None:intergenic | 35.0% |
| CTGCCAAAGCTGTAATATTT+CGG | + | chr8_4:7028116-7028135 | Msa1310400:intron | 35.0% | |
| TTAGCATATACCACTCATCA+GGG | - | chr8_4:7028173-7028192 | None:intergenic | 35.0% | |
| ATTAGCATATACCACTCATC+AGG | - | chr8_4:7028174-7028193 | None:intergenic | 35.0% | |
| GGAGTTGCATTTCTGTTTAA+TGG | + | chr8_4:7028300-7028319 | Msa1310400:CDS | 35.0% | |
| GTGTTTAGACTTTAGTGCTA+CGG | + | chr8_4:7028519-7028538 | Msa1310400:exon | 35.0% | |
| AGGTGATGTATCCGTATTAG+GGG | + | chr8_4:7025096-7025115 | Msa1310400:intron | 40.0% | |
| TAAAATGTTGTATGGTCGGG+TGG | + | chr8_4:7025380-7025399 | Msa1310400:intron | 40.0% | |
| TTATTGTGATGAGCACTCTG+TGG | + | chr8_4:7025562-7025581 | Msa1310400:CDS | 40.0% | |
| CACAAACCTTATCTGGACAA+TGG | - | chr8_4:7025640-7025659 | None:intergenic | 40.0% | |
| ! | TATTTGGCTTCAGATGCACA+TGG | + | chr8_4:7025736-7025755 | Msa1310400:intron | 40.0% |
| TTCAGATGCACATGGAAGAT+GGG | + | chr8_4:7025744-7025763 | Msa1310400:intron | 40.0% | |
| TGCACTCTGATCATAAGAGA+TGG | - | chr8_4:7025792-7025811 | None:intergenic | 40.0% | |
| ! | CAAAAGTGTAAGTGCTACGT+AGG | + | chr8_4:7025994-7026013 | Msa1310400:intron | 40.0% |
| ACCATCAATGACACTTTCAG+TGG | - | chr8_4:7026237-7026256 | None:intergenic | 40.0% | |
| CAACAAACACAAACCTCATC+AGG | - | chr8_4:7026624-7026643 | None:intergenic | 40.0% | |
| ! | TTGTAGCTGCAAATGATGGA+AGG | + | chr8_4:7026820-7026839 | Msa1310400:intron | 40.0% |
| AATTGCACGCATGAAACTGA+AGG | + | chr8_4:7026873-7026892 | Msa1310400:CDS | 40.0% | |
| ATTAATAGCGTTACCGAACC+TGG | - | chr8_4:7026906-7026925 | None:intergenic | 40.0% | |
| ! | GAGTATTCATGGTTCTGTTC+AGG | + | chr8_4:7026989-7027008 | Msa1310400:intron | 40.0% |
| ! | ATTCATGGTTCTGTTCAGGA+AGG | + | chr8_4:7026993-7027012 | Msa1310400:intron | 40.0% |
| ACTGGTGTAACGACTTAGTT+TGG | - | chr8_4:7027027-7027046 | None:intergenic | 40.0% | |
| ACTAAGTCGTTACACCAGTT+CGG | + | chr8_4:7027028-7027047 | Msa1310400:intron | 40.0% | |
| ACCACTGTACAAGTTCGTTA+GGG | - | chr8_4:7027083-7027102 | None:intergenic | 40.0% | |
| AACCACTGTACAAGTTCGTT+AGG | - | chr8_4:7027084-7027103 | None:intergenic | 40.0% | |
| AACGAACTTGTACAGTGGTT+TGG | + | chr8_4:7027084-7027103 | Msa1310400:intron | 40.0% | |
| !! | TTGTACAGTGGTTTGGTGTA+TGG | + | chr8_4:7027091-7027110 | Msa1310400:intron | 40.0% |
| !! | TGTACAGTGGTTTGGTGTAT+GGG | + | chr8_4:7027092-7027111 | Msa1310400:intron | 40.0% |
| !!! | AAGTTTGGTTTTTTCGGGTG+CGG | + | chr8_4:7027240-7027259 | Msa1310400:intron | 40.0% |
| TAGATGAACTCACAAACCTG+TGG | + | chr8_4:7027334-7027353 | Msa1310400:intron | 40.0% | |
| !! | GGTTTTTGGATGTTGTAGGA+TGG | + | chr8_4:7027470-7027489 | Msa1310400:intron | 40.0% |
| TTACTGTAATCATCACTCGG+TGG | + | chr8_4:7027550-7027569 | Msa1310400:CDS | 40.0% | |
| TGTTTAATGAGCATCACGTG+CGG | + | chr8_4:7027594-7027613 | Msa1310400:CDS | 40.0% | |
| CTGATATTCAACAGCACTAG+TGG | - | chr8_4:7027673-7027692 | None:intergenic | 40.0% | |
| ! | CATTTTGCTGCAGATGCAAA+TGG | + | chr8_4:7027921-7027940 | Msa1310400:intron | 40.0% |
| CTATCTTCTATGATCAGAGC+AGG | + | chr8_4:7027965-7027984 | Msa1310400:CDS | 40.0% | |
| ! | CGAAATATTACAGCTTTGGC+AGG | - | chr8_4:7028118-7028137 | None:intergenic | 40.0% |
| TGGCCGAAATATTACAGCTT+TGG | - | chr8_4:7028122-7028141 | None:intergenic | 40.0% | |
| CAATTAGAAACCCTGATGAG+TGG | + | chr8_4:7028160-7028179 | Msa1310400:intron | 40.0% | |
| ! | GTTGGGTTTGAAGCTTCATT+CGG | + | chr8_4:7028207-7028226 | Msa1310400:CDS | 40.0% |
| ATATTTGATGCAGCTGGGAA+TGG | + | chr8_4:7028457-7028476 | Msa1310400:intron | 40.0% | |
| !! | ATGAAGTAGACGAGTACCGA+AGG | - | chr8_4:7025126-7025145 | None:intergenic | 45.0% |
| ! | TTTGATGGCAATGGTCTCCA+GGG | + | chr8_4:7025611-7025630 | Msa1310400:CDS | 45.0% |
| CTTCAGATGCACATGGAAGA+TGG | + | chr8_4:7025743-7025762 | Msa1310400:intron | 45.0% | |
| TGCACACATTAAGCTCAACC+TGG | + | chr8_4:7025808-7025827 | Msa1310400:CDS | 45.0% | |
| CAACCTGGACCTCAATATCA+AGG | + | chr8_4:7025823-7025842 | Msa1310400:CDS | 45.0% | |
| TGTCCTTGATATTGAGGTCC+AGG | - | chr8_4:7025829-7025848 | None:intergenic | 45.0% | |
| !! | GCCACTGAAAGTGTCATTGA+TGG | + | chr8_4:7026233-7026252 | Msa1310400:intron | 45.0% |
| ACCCTAACGAACTTGTACAG+TGG | + | chr8_4:7027079-7027098 | Msa1310400:intron | 45.0% | |
| !! | GGTTTGGTGTATGGGTTATG+TGG | + | chr8_4:7027100-7027119 | Msa1310400:intron | 45.0% |
| CTGCACCCAAAACAACTGAA+TGG | + | chr8_4:7027189-7027208 | Msa1310400:intron | 45.0% | |
| GTTTAATGAGCATCACGTGC+GGG | + | chr8_4:7027595-7027614 | Msa1310400:CDS | 45.0% | |
| TTTGCTGCAGATGCAAATGG+TGG | + | chr8_4:7027924-7027943 | Msa1310400:intron | 45.0% | |
| CGCATCAACCTCAAAGTCAA+GGG | + | chr8_4:7027988-7028007 | Msa1310400:CDS | 45.0% | |
| TTTCGGCCACTTCAATGATG+TGG | + | chr8_4:7028133-7028152 | Msa1310400:intron | 45.0% | |
| TGCTGACCACATCATTGAAG+TGG | - | chr8_4:7028142-7028161 | None:intergenic | 45.0% | |
| GACTTTAGTGCTACGGTAAG+TGG | + | chr8_4:7028526-7028545 | Msa1310400:exon | 45.0% | |
| TTATATACAGCCGTTACGGC+TGG | + | chr8_4:7028608-7028627 | Msa1310400:three_prime_UTR | 45.0% | |
| CTATCAAAGTCCAGCCGTAA+CGG | - | chr8_4:7028621-7028640 | None:intergenic | 45.0% | |
| ! | GTTTGATGGCAATGGTCTCC+AGG | + | chr8_4:7025610-7025629 | Msa1310400:CDS | 50.0% |
| TATCTGGACAATGGTCTCCC+TGG | - | chr8_4:7025631-7025650 | None:intergenic | 50.0% | |
| GGGAGACCATTGTCCAGATA+AGG | + | chr8_4:7025631-7025650 | Msa1310400:CDS | 50.0% | |
| GTCACAGTTTGTGTCGTGTC+CGG | - | chr8_4:7025902-7025921 | None:intergenic | 50.0% | |
| CACGACACAAACTGTGACAC+CGG | + | chr8_4:7025904-7025923 | Msa1310400:intron | 50.0% | |
| GTTGATGTAGGATGGGGTTG+AGG | + | chr8_4:7026470-7026489 | Msa1310400:intron | 50.0% | |
| GAAACTGAAGGTCAAGTGCC+AGG | + | chr8_4:7026885-7026904 | Msa1310400:CDS | 50.0% | |
| TGAAGGTCAAGTGCCAGGTT+CGG | + | chr8_4:7026890-7026909 | Msa1310400:intron | 50.0% | |
| CAAACGAGGTTCGTGTTAGC+CGG | + | chr8_4:7027630-7027649 | Msa1310400:intron | 50.0% | |
| ! | CTGCAGATGCAAATGGTGGA+TGG | + | chr8_4:7027928-7027947 | Msa1310400:intron | 50.0% |
| GCGCATCAACCTCAAAGTCA+AGG | + | chr8_4:7027987-7028006 | Msa1310400:CDS | 50.0% | |
| CTAGAGACACAGACCTCATC+TGG | - | chr8_4:7028351-7028370 | None:intergenic | 50.0% | |
| ATGCAGCTGGGAATGGAAGA+TGG | + | chr8_4:7028464-7028483 | Msa1310400:intron | 50.0% | |
| ! | CCGAAGGCGTACCCCTAATA+CGG | - | chr8_4:7025110-7025129 | None:intergenic | 55.0% |
| ! | CCGTATTAGGGGTACGCCTT+CGG | + | chr8_4:7025107-7025126 | Msa1310400:intron | 55.0% |
| AGCTGAGCAGACTCCTGATG+AGG | + | chr8_4:7026608-7026627 | Msa1310400:CDS | 55.0% | |
| CGGCTAACACGAACCTCGTT+TGG | - | chr8_4:7027632-7027651 | None:intergenic | 55.0% | |
| CAACCTCAAAGTCAAGGGCC+AGG | + | chr8_4:7027993-7028012 | Msa1310400:CDS | 55.0% | |
| TGACCTGGCCCTTGACTTTG+AGG | - | chr8_4:7027999-7028018 | None:intergenic | 55.0% | |
| ! | GACCTCATCTGGAGTCTGCT+CGG | - | chr8_4:7028340-7028359 | None:intergenic | 55.0% |
| GGCAGAGCAGTCTCCAAACG+AGG | + | chr8_4:7027616-7027635 | Msa1310400:CDS | 60.0% | |
| GTCCGAGCAGACTCCAGATG+AGG | + | chr8_4:7028335-7028354 | Msa1310400:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_4 | gene | 7025080 | 7028682 | 7025080 | ID=Msa1310400;Name=Msa1310400 |
| chr8_4 | mRNA | 7025080 | 7028682 | 7025080 | ID=Msa1310400-mRNA-1;Parent=Msa1310400;Name=Msa1310400-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0|0.87|0.77|0.88|1|1|9|156|296 |
| chr8_4 | exon | 7025080 | 7025097 | 7025080 | ID=Msa1310400-mRNA-1:exon:2427;Parent=Msa1310400-mRNA-1 |
| chr8_4 | exon | 7025551 | 7025652 | 7025551 | ID=Msa1310400-mRNA-1:exon:2428;Parent=Msa1310400-mRNA-1 |
| chr8_4 | exon | 7025749 | 7025850 | 7025749 | ID=Msa1310400-mRNA-1:exon:2429;Parent=Msa1310400-mRNA-1 |
| chr8_4 | exon | 7026480 | 7026629 | 7026480 | ID=Msa1310400-mRNA-1:exon:2430;Parent=Msa1310400-mRNA-1 |
| chr8_4 | exon | 7026826 | 7026906 | 7026826 | ID=Msa1310400-mRNA-1:exon:2431;Parent=Msa1310400-mRNA-1 |
| chr8_4 | exon | 7027488 | 7027637 | 7027488 | ID=Msa1310400-mRNA-1:exon:2432;Parent=Msa1310400-mRNA-1 |
| chr8_4 | exon | 7027934 | 7028014 | 7027934 | ID=Msa1310400-mRNA-1:exon:2433;Parent=Msa1310400-mRNA-1 |
| chr8_4 | exon | 7028207 | 7028356 | 7028207 | ID=Msa1310400-mRNA-1:exon:2434;Parent=Msa1310400-mRNA-1 |
| chr8_4 | exon | 7028470 | 7028682 | 7028470 | ID=Msa1310400-mRNA-1:exon:2435;Parent=Msa1310400-mRNA-1 |
| chr8_4 | CDS | 7025080 | 7025097 | 7025080 | ID=Msa1310400-mRNA-1:cds;Parent=Msa1310400-mRNA-1 |
| chr8_4 | CDS | 7025551 | 7025652 | 7025551 | ID=Msa1310400-mRNA-1:cds;Parent=Msa1310400-mRNA-1 |
| chr8_4 | CDS | 7025749 | 7025850 | 7025749 | ID=Msa1310400-mRNA-1:cds;Parent=Msa1310400-mRNA-1 |
| chr8_4 | CDS | 7026480 | 7026629 | 7026480 | ID=Msa1310400-mRNA-1:cds;Parent=Msa1310400-mRNA-1 |
| chr8_4 | CDS | 7026826 | 7026906 | 7026826 | ID=Msa1310400-mRNA-1:cds;Parent=Msa1310400-mRNA-1 |
| chr8_4 | CDS | 7027488 | 7027637 | 7027488 | ID=Msa1310400-mRNA-1:cds;Parent=Msa1310400-mRNA-1 |
| chr8_4 | CDS | 7027934 | 7028014 | 7027934 | ID=Msa1310400-mRNA-1:cds;Parent=Msa1310400-mRNA-1 |
| chr8_4 | CDS | 7028207 | 7028356 | 7028207 | ID=Msa1310400-mRNA-1:cds;Parent=Msa1310400-mRNA-1 |
| chr8_4 | CDS | 7028470 | 7028526 | 7028470 | ID=Msa1310400-mRNA-1:cds;Parent=Msa1310400-mRNA-1 |
| chr8_4 | three_prime_UTR | 7028527 | 7028682 | 7028527 | ID=Msa1310400-mRNA-1:three_prime_utr;Parent=Msa1310400-mRNA-1 |
| Gene Sequence |
| Protein sequence |
