AlfalfaGEDB | Msa1298510

M. sativa cultivar zhongmu-4 / Msa1298510

KEGG: K10881
GO: -
PFAM: PF05160.16

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1298510	XP_031403125.1	84.722	72	10	1	1	71	1	72	7.93e-14	70.1

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1298510	A0A2G5DAD2	69.333	75	20	2	1	72	1	75	1.50e-15	74.7

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0002230	Msa1298510	0.811468	6.896057e-51	-8.615850e-47
Msa0002240	Msa1298510	0.836390	9.624035e-57	-8.615850e-47
Msa0003890	Msa1298510	0.842994	1.840468e-58	-8.615850e-47
Msa0006070	Msa1298510	0.814892	1.222552e-51	-8.615850e-47
Msa0006110	Msa1298510	0.819101	1.385898e-52	-8.615850e-47
Msa0007440	Msa1298510	0.828068	1.103855e-54	-8.615850e-47
Msa0011170	Msa1298510	0.822363	2.466225e-53	-8.615850e-47
Msa0011660	Msa1298510	-0.857635	1.427333e-62	-8.615850e-47
Msa0011960	Msa1298510	0.858402	8.444672e-63	-8.615850e-47
Msa0014710	Msa1298510	0.802661	5.047244e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 31 sgRNAs with CRISPR-Local

Find 102 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCTTCCGAGAACGTCA+AGG	0.660047	8_3:-59370986	Msa1298510:CDS
AAATTAGGGTTTCTGAGATT+TGG	0.249611	8_3:-59371032	Msa1298510:five_prime_UTR
AAGAAATAAAACTATTTGTT+AGG	0.306769	8_3:-59370644	Msa1298510:exon
AATTAGGGTTTCTGAGATTT+GGG	0.294104	8_3:-59371031	Msa1298510:five_prime_UTR
ACAACTCATTTGAGATGATA+AGG	0.388084	8_3:-59371123	Msa1298510:five_prime_UTR
ACGATAGTGATATGTCTTCG+AGG	0.550743	8_3:+59371081	None:intergenic
ACTTGCAGGTTGGGAAGACA+AGG	0.596138	8_3:-59370774	Msa1298510:intron
AGAAACCCTAATTTAAAATT+TGG	0.114721	8_3:+59371041	None:intergenic
AGACAAGGAGGAAGGGAGAG+AGG	0.431303	8_3:-59370759	Msa1298510:CDS
CAACTCATTTGAGATGATAA+GGG	0.399945	8_3:-59371122	Msa1298510:five_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATTGATTGCAACAACGAT+TGG	+	chr8_3:59370656-59370675	None:intergenic	30.0%
AAATTGATTGCAACAACGAT+TGG	+	chr8_3:59370656-59370675	None:intergenic	30.0%
AACAACGATTGGAATGAAGA+GGG	+	chr8_3:59370645-59370664	None:intergenic	35.0%
TACACCACATCAAATTGTTG+TGG	-	chr8_3:59371030-59371049	Msa1298510:five_prime_UTR	35.0%
TATGCCACAACAATTTGATG+TGG	+	chr8_3:59371037-59371056	None:intergenic	35.0%
CATAGTATCACTTGTGAGTA+TGG	-	chr8_3:59371053-59371072	Msa1298510:five_prime_UTR	35.0%
GAACGATTGTGGTTAAACTT+AGG	-	chr8_3:59371096-59371115	Msa1298510:five_prime_UTR	35.0%
AACAACGATTGGAATGAAGA+GGG	+	chr8_3:59370645-59370664	None:intergenic	35.0%
TACACCACATCAAATTGTTG+TGG	-	chr8_3:59371030-59371049	Msa1298510:five_prime_UTR	35.0%
TATGCCACAACAATTTGATG+TGG	+	chr8_3:59371037-59371056	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_3	gene	59370401	59371147	59370401	ID=Msa1298510;Name=Msa1298510
chr8_3	mRNA	59370401	59371147	59370401	ID=Msa1298510-mRNA-1;Parent=Msa1298510;Name=Msa1298510-mRNA-1;_AED=0.25;_eAED=0.25;_QI=125\|1\|1\|1\|1\|1\|2\|257\|72
chr8_3	exon	59370401	59370788	59370401	ID=Msa1298510-mRNA-1:exon:17136;Parent=Msa1298510-mRNA-1
chr8_3	exon	59370935	59371147	59370935	ID=Msa1298510-mRNA-1:exon:17135;Parent=Msa1298510-mRNA-1
chr8_3	five_prime_UTR	59371023	59371147	59371023	ID=Msa1298510-mRNA-1:five_prime_utr;Parent=Msa1298510-mRNA-1
chr8_3	CDS	59370935	59371022	59370935	ID=Msa1298510-mRNA-1:cds;Parent=Msa1298510-mRNA-1
chr8_3	CDS	59370658	59370788	59370658	ID=Msa1298510-mRNA-1:cds;Parent=Msa1298510-mRNA-1
chr8_3	three_prime_UTR	59370401	59370657	59370401	ID=Msa1298510-mRNA-1:three_prime_utr;Parent=Msa1298510-mRNA-1

Gene Sequence	>Msa1298510 ATGGCAACCGAGCCAAAACCTTCCGAGAACGTCAAGGTTGATCTCTTTGAAGACGACGACGAGTTCGAGGAGTTTGAAATCAACGAAGGTTGGGAAGACAAGGAGGAAGGGAGAGAGGTAGCTCAGCAATGGGAAGATGATTGGGATGATGATGATGTTAGTGATGATTTCTCTCTTCAGCTAAAGAGAGAGTTAGAGGGCAATGCTGAGAAGAAATAA
Protein sequence	>Msa1298510 MATEPKPSENVKVDLFEDDDEFEEFEINEGWEDKEEGREVAQQWEDDWDDDDVSDDFSLQLKRELEGNAEKK*