AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0608160


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0608160 MtrunA17_Chr4g0039921 96.855 159 5 0 1 159 1 159 3.76e-110 310
Msa0608160 MtrunA17_Chr4g0039941 78.125 160 34 1 1 159 1 160 1.75e-86 250
Msa0608160 MtrunA17_Chr3g0100201 36.634 101 62 1 31 129 30 130 1.97e-14 66.6
Msa0608160 MtrunA17_Chr3g0100191 30.693 101 70 0 27 127 26 126 9.88e-12 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 72 sgRNAs with CRISPR-Local

Find 262 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCACCTTCTGAAATCTTTC+AGG 0.221004 4_2:-55192209 None:intergenic
ATGTTTATAGTTATATTATA+TGG 0.251963 4_2:-55191942 None:intergenic
CTCTTTGGCACTCTTGCTAT+TGG 0.264799 4_2:+55192164 Msa0608160:CDS
CCATCTTGTGGGTTACATTT+GGG 0.284338 4_2:-55191901 None:intergenic
GTAATATTACGAAACATAAA+TGG 0.286124 4_2:+55193607 Msa0608160:three_prime_UTR
TCCATCTTGTGGGTTACATT+TGG 0.298650 4_2:-55191902 None:intergenic
GGGTGTTATGTGTCAAGTTT+AGG 0.343468 4_2:+55191971 Msa0608160:five_prime_UTR
CTAGTTTCATTACATCTTGA+AGG 0.364837 4_2:-55193680 None:intergenic
AGATCCCATGCTTCACTTGC+TGG 0.373899 4_2:-55192143 None:intergenic
ACTAGTTCACCACACTTGAT+AGG 0.374795 4_2:-55193708 None:intergenic
GAAAATTTGTTCTTCAACCT+TGG 0.382969 4_2:-55193535 None:intergenic
CTACAACGTCTGCCAATTGC+TGG 0.406562 4_2:-55193292 None:intergenic
AAAGAGATCAAGAAGATGTT+TGG 0.416699 4_2:+55192089 Msa0608160:exon
TCAGGTTTACCTGGCCCAAC+TGG 0.416975 4_2:+55193062 Msa0608160:intron
TTGAAGGAGATGGAGGGGTT+GGG 0.418155 4_2:+55192237 Msa0608160:CDS
TCGGTTATCCTAGAATCATT+TGG 0.421799 4_2:-55193560 None:intergenic
ACTTGTTTCCATCCAGCAAT+TGG 0.424661 4_2:+55193280 Msa0608160:CDS
GGAAAGAGAAATTGCACAAA+GGG 0.426563 4_2:-55193736 None:intergenic
GATGGAAACAAGTGCGGCAT+TGG 0.436193 4_2:-55193270 None:intergenic
AGTGAAGCATGGGATCTCTT+TGG 0.449536 4_2:+55192149 Msa0608160:CDS
TTGCATCCTTGTTTCTGTTG+AGG 0.456610 4_2:-55193331 None:intergenic
ATTGAAGGAGATGGAGGGGT+TGG 0.457658 4_2:+55192236 Msa0608160:CDS
ATAATATAACTATAAACATC+TGG 0.459178 4_2:+55191946 Msa0608160:five_prime_UTR
AAAGAAGTGGAGGTGGTTGA+AGG 0.462385 4_2:+55193128 Msa0608160:CDS
TGTAATCATGTTAGTTATGG+TGG 0.480600 4_2:+55193652 Msa0608160:three_prime_UTR
TACACAAACTATTTGGGATG+TGG 0.481481 4_2:-55192066 None:intergenic
AAGAAGTGGAGGTGGTTGAA+GGG 0.482356 4_2:+55193129 Msa0608160:CDS
GGAGTTTGATCAGGTTTACC+TGG 0.484092 4_2:+55193053 Msa0608160:intron
TTTGCATGCCTCCATCTTGT+GGG 0.487297 4_2:-55191912 None:intergenic
TTGGCAGACGTTGTAGAAGT+TGG 0.487317 4_2:+55193299 Msa0608160:CDS
CACACTATTTAGAGTTCGTA+TGG 0.490157 4_2:+55193172 Msa0608160:CDS
TATAACTATAAACATCTGGC+AGG 0.492572 4_2:+55191950 Msa0608160:five_prime_UTR
CGTATGGAAGTGATAGAGAA+AGG 0.493358 4_2:+55193188 Msa0608160:CDS
AGGTTCGATAATCGATACTT+TGG 0.496223 4_2:-55193506 None:intergenic
CAGAAGGTGGAGCTAATTGA+AGG 0.500124 4_2:+55192221 Msa0608160:CDS
TTGTGTAATCATGTTAGTTA+TGG 0.504977 4_2:+55193649 Msa0608160:three_prime_UTR
AGAAGTGGAGGTGGTTGAAG+GGG 0.506956 4_2:+55193130 Msa0608160:CDS
TTCTTCAACCTTGGCGACCT+AGG 0.511757 4_2:-55193526 None:intergenic
GTGGAGCTAATTGAAGGAGA+TGG 0.515580 4_2:+55192227 Msa0608160:CDS
AGAGTATGAAGTCAAGGAAG+AGG 0.520181 4_2:+55193241 Msa0608160:CDS
GAATTAATGAAACAAAATGT+TGG 0.523562 4_2:-55193455 None:intergenic
CTCAAACTCACATTCACTCC+AGG 0.525858 4_2:+55192266 Msa0608160:CDS
TGAAGTCAAGGAAGAGGAAG+CGG 0.526015 4_2:+55193247 Msa0608160:CDS
TGGCACTCTTGCTATTGGAA+AGG 0.531710 4_2:+55192169 Msa0608160:CDS
TACATTAGAGTATGAAGTCA+AGG 0.533592 4_2:+55193235 Msa0608160:CDS
GAGCTAATTGAAGGAGATGG+AGG 0.540375 4_2:+55192230 Msa0608160:CDS
GAAGTGGAGGTGGTTGAAGG+GGG 0.553306 4_2:+55193131 Msa0608160:CDS
CGTGCCAGCAAGTGAAGCAT+GGG 0.555967 4_2:+55192139 Msa0608160:CDS
CCCAAATGTAACCCACAAGA+TGG 0.560304 4_2:+55191901 Msa0608160:five_prime_UTR
TGAAAAGCACATCAAAGAAG+TGG 0.563701 4_2:+55193115 Msa0608160:CDS
ACGTGCCAGCAAGTGAAGCA+TGG 0.570168 4_2:+55192138 Msa0608160:CDS
TATACTTCACATCAAAATTG+TGG 0.571099 4_2:+55192003 Msa0608160:five_prime_UTR
AACGTCTGCCAATTGCTGGA+TGG 0.574607 4_2:-55193288 None:intergenic
GCACATCAAAGAAGTGGAGG+TGG 0.578278 4_2:+55193121 Msa0608160:CDS
AGCTAATTGAAGGAGATGGA+GGG 0.580245 4_2:+55192231 Msa0608160:CDS
TATTTGGGATGTGGTGTATG+TGG 0.581504 4_2:-55192057 None:intergenic
GCTAATTGAAGGAGATGGAG+GGG 0.586950 4_2:+55192232 Msa0608160:CDS
GCCTGAAAGATTTCAGAAGG+TGG 0.605828 4_2:+55192208 Msa0608160:CDS
ATGGCAGAAGTATACTCTCA+AGG 0.607696 4_2:+55193626 Msa0608160:three_prime_UTR
TGCTATTGGAAAGGTCGTTG+AGG 0.616559 4_2:+55192178 Msa0608160:CDS
ATAACTATAAACATCTGGCA+GGG 0.617981 4_2:+55191951 Msa0608160:five_prime_UTR
GATGCCTGAAAGATTTCAGA+AGG 0.633462 4_2:+55192205 Msa0608160:CDS
ATTTGAGAAATAGTACATGT+CGG 0.639477 4_2:-55193579 None:intergenic
GGGAAAGAGAAATTGCACAA+AGG 0.643581 4_2:-55193737 None:intergenic
GATGTGGTGTATGTGGTGCG+TGG 0.649817 4_2:-55192050 None:intergenic
AAAGCACATCAAAGAAGTGG+AGG 0.653324 4_2:+55193118 Msa0608160:CDS
TTATCGAACCTAGGTCGCCA+AGG 0.654190 4_2:+55193518 Msa0608160:three_prime_UTR
AAATGTAACCCACAAGATGG+AGG 0.674240 4_2:+55191904 Msa0608160:five_prime_UTR
AAGTATCGATTATCGAACCT+AGG 0.675431 4_2:+55193509 Msa0608160:three_prime_UTR
TTGCTGGATGGAAACAAGTG+CGG 0.676967 4_2:-55193276 None:intergenic
GAATTACCTCAACAGAAACA+AGG 0.697908 4_2:+55193325 Msa0608160:CDS
CTAGACGTACCTATCAAGTG+TGG 0.700739 4_2:+55193699 Msa0608160:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATGTTTATAGTTATATTATA+TGG - chr4_2:55191945-55191964 None:intergenic 10.0%
!! ATGTTTATAGTTATATTATA+TGG - chr4_2:55191945-55191964 None:intergenic 10.0%
!! ATAATATAACTATAAACATC+TGG + chr4_2:55191946-55191965 Msa0608160:five_prime_UTR 15.0%
!! AAATAATAATGAAAATAACC+TGG - chr4_2:55192287-55192306 None:intergenic 15.0%
!!! TATATTTTTGAGTATAATTG+TGG - chr4_2:55192332-55192351 None:intergenic 15.0%
!! ATTATTTACACTTGAATAAA+AGG - chr4_2:55192753-55192772 None:intergenic 15.0%
!!! TTTTATTCAAGTGTAAATAA+TGG + chr4_2:55192752-55192771 Msa0608160:intron 15.0%
!!! TAACATAACATTAATTGTTT+TGG + chr4_2:55193028-55193047 Msa0608160:intron 15.0%
!!! AATAGTTTTCTTAAAAAAGA+TGG - chr4_2:55193773-55193792 None:intergenic 15.0%
!! ATAATATAACTATAAACATC+TGG + chr4_2:55191946-55191965 Msa0608160:five_prime_UTR 15.0%
!! AAATAATAATGAAAATAACC+TGG - chr4_2:55192287-55192306 None:intergenic 15.0%
!!! TATATTTTTGAGTATAATTG+TGG - chr4_2:55192332-55192351 None:intergenic 15.0%
!! ATTATTTACACTTGAATAAA+AGG - chr4_2:55192753-55192772 None:intergenic 15.0%
!!! TTTTATTCAAGTGTAAATAA+TGG + chr4_2:55192752-55192771 Msa0608160:intron 15.0%
!!! TAACATAACATTAATTGTTT+TGG + chr4_2:55193028-55193047 Msa0608160:intron 15.0%
!!! AATAGTTTTCTTAAAAAAGA+TGG - chr4_2:55193773-55193792 None:intergenic 15.0%
!! TTATCGTTACATAATTCATA+TGG + chr4_2:55192353-55192372 Msa0608160:intron 20.0%
!! AATTAAATAGAAAGTAGTCT+CGG - chr4_2:55192567-55192586 None:intergenic 20.0%
!! ATGATGAATTAACATACTTA+CGG + chr4_2:55192932-55192951 Msa0608160:intron 20.0%
!!! ATAACATTAATTGTTTTGGT+CGG + chr4_2:55193032-55193051 Msa0608160:intron 20.0%
!! TTAGAGAAAAGAAAAACTTA+TGG + chr4_2:55193394-55193413 Msa0608160:three_prime_UTR 20.0%
!! GAATTAATGAAACAAAATGT+TGG - chr4_2:55193458-55193477 None:intergenic 20.0%
!! GTAATATTACGAAACATAAA+TGG + chr4_2:55193607-55193626 Msa0608160:three_prime_UTR 20.0%
!! AAAAAGATGGAAAGAATTTA+GGG - chr4_2:55193760-55193779 None:intergenic 20.0%
!! AAAAAAGATGGAAAGAATTT+AGG - chr4_2:55193761-55193780 None:intergenic 20.0%
!! TTATCGTTACATAATTCATA+TGG + chr4_2:55192353-55192372 Msa0608160:intron 20.0%
!! AATTAAATAGAAAGTAGTCT+CGG - chr4_2:55192567-55192586 None:intergenic 20.0%
!! ATGATGAATTAACATACTTA+CGG + chr4_2:55192932-55192951 Msa0608160:intron 20.0%
!!! ATAACATTAATTGTTTTGGT+CGG + chr4_2:55193032-55193051 Msa0608160:intron 20.0%
!! TTAGAGAAAAGAAAAACTTA+TGG + chr4_2:55193394-55193413 Msa0608160:three_prime_UTR 20.0%
!! GAATTAATGAAACAAAATGT+TGG - chr4_2:55193458-55193477 None:intergenic 20.0%
!! GTAATATTACGAAACATAAA+TGG + chr4_2:55193607-55193626 Msa0608160:three_prime_UTR 20.0%
!! AAAAAGATGGAAAGAATTTA+GGG - chr4_2:55193760-55193779 None:intergenic 20.0%
!! AAAAAAGATGGAAAGAATTT+AGG - chr4_2:55193761-55193780 None:intergenic 20.0%
! TATACTTCACATCAAAATTG+TGG + chr4_2:55192003-55192022 Msa0608160:five_prime_UTR 25.0%
!! CTCTTTTACACAAACTATTT+GGG - chr4_2:55192075-55192094 None:intergenic 25.0%
!! TCTCTTTTACACAAACTATT+TGG - chr4_2:55192076-55192095 None:intergenic 25.0%
!! CTATTGTATCATGAACATTT+TGG + chr4_2:55192604-55192623 Msa0608160:intron 25.0%
! AATCTATAGATTCATGAGTT+TGG + chr4_2:55192889-55192908 Msa0608160:intron 25.0%
! TGATGAATTAACATACTTAC+GGG + chr4_2:55192933-55192952 Msa0608160:intron 25.0%
!! ACTTTTCTTTTAAACCAGTT+GGG - chr4_2:55193079-55193098 None:intergenic 25.0%
!! AACTTTTCTTTTAAACCAGT+TGG - chr4_2:55193080-55193099 None:intergenic 25.0%
!! CATCATCATGTATTTTCTTT+TGG + chr4_2:55193479-55193498 Msa0608160:three_prime_UTR 25.0%
!! ATTTTCAACCAAATGATTCT+AGG + chr4_2:55193552-55193571 Msa0608160:three_prime_UTR 25.0%
! ATTTGAGAAATAGTACATGT+CGG - chr4_2:55193582-55193601 None:intergenic 25.0%
! TTGTGTAATCATGTTAGTTA+TGG + chr4_2:55193649-55193668 Msa0608160:three_prime_UTR 25.0%
! TATACTTCACATCAAAATTG+TGG + chr4_2:55192003-55192022 Msa0608160:five_prime_UTR 25.0%
!! CTCTTTTACACAAACTATTT+GGG - chr4_2:55192075-55192094 None:intergenic 25.0%
!! TCTCTTTTACACAAACTATT+TGG - chr4_2:55192076-55192095 None:intergenic 25.0%
!! CTATTGTATCATGAACATTT+TGG + chr4_2:55192604-55192623 Msa0608160:intron 25.0%
! AATCTATAGATTCATGAGTT+TGG + chr4_2:55192889-55192908 Msa0608160:intron 25.0%
! TGATGAATTAACATACTTAC+GGG + chr4_2:55192933-55192952 Msa0608160:intron 25.0%
!! ACTTTTCTTTTAAACCAGTT+GGG - chr4_2:55193079-55193098 None:intergenic 25.0%
!! AACTTTTCTTTTAAACCAGT+TGG - chr4_2:55193080-55193099 None:intergenic 25.0%
!! CATCATCATGTATTTTCTTT+TGG + chr4_2:55193479-55193498 Msa0608160:three_prime_UTR 25.0%
!! ATTTTCAACCAAATGATTCT+AGG + chr4_2:55193552-55193571 Msa0608160:three_prime_UTR 25.0%
! ATTTGAGAAATAGTACATGT+CGG - chr4_2:55193582-55193601 None:intergenic 25.0%
! TTGTGTAATCATGTTAGTTA+TGG + chr4_2:55193649-55193668 Msa0608160:three_prime_UTR 25.0%
TATAACTATAAACATCTGGC+AGG + chr4_2:55191950-55191969 Msa0608160:five_prime_UTR 30.0%
ATAACTATAAACATCTGGCA+GGG + chr4_2:55191951-55191970 Msa0608160:five_prime_UTR 30.0%
AAAGAGATCAAGAAGATGTT+TGG + chr4_2:55192089-55192108 Msa0608160:exon 30.0%
TTCATCTTAAGCTGAATAAG+TGG + chr4_2:55192474-55192493 Msa0608160:intron 30.0%
ACATTTGATATGTAAGGATC+AGG - chr4_2:55192516-55192535 None:intergenic 30.0%
GACATCACATTTGATATGTA+AGG - chr4_2:55192522-55192541 None:intergenic 30.0%
!! ATTGATTTTGCCATCCAAAA+AGG + chr4_2:55192699-55192718 Msa0608160:intron 30.0%
! GTGCTTTTCATTATCAATCT+TGG - chr4_2:55193105-55193124 None:intergenic 30.0%
TACATTAGAGTATGAAGTCA+AGG + chr4_2:55193235-55193254 Msa0608160:CDS 30.0%
! GAAAATTTGTTCTTCAACCT+TGG - chr4_2:55193538-55193557 None:intergenic 30.0%
TGTAATCATGTTAGTTATGG+TGG + chr4_2:55193652-55193671 Msa0608160:three_prime_UTR 30.0%
CTAGTTTCATTACATCTTGA+AGG - chr4_2:55193683-55193702 None:intergenic 30.0%
TATAACTATAAACATCTGGC+AGG + chr4_2:55191950-55191969 Msa0608160:five_prime_UTR 30.0%
ATAACTATAAACATCTGGCA+GGG + chr4_2:55191951-55191970 Msa0608160:five_prime_UTR 30.0%
AAAGAGATCAAGAAGATGTT+TGG + chr4_2:55192089-55192108 Msa0608160:exon 30.0%
TTCATCTTAAGCTGAATAAG+TGG + chr4_2:55192474-55192493 Msa0608160:intron 30.0%
ACATTTGATATGTAAGGATC+AGG - chr4_2:55192516-55192535 None:intergenic 30.0%
GACATCACATTTGATATGTA+AGG - chr4_2:55192522-55192541 None:intergenic 30.0%
!! ATTGATTTTGCCATCCAAAA+AGG + chr4_2:55192699-55192718 Msa0608160:intron 30.0%
! GTGCTTTTCATTATCAATCT+TGG - chr4_2:55193105-55193124 None:intergenic 30.0%
TACATTAGAGTATGAAGTCA+AGG + chr4_2:55193235-55193254 Msa0608160:CDS 30.0%
! GAAAATTTGTTCTTCAACCT+TGG - chr4_2:55193538-55193557 None:intergenic 30.0%
TGTAATCATGTTAGTTATGG+TGG + chr4_2:55193652-55193671 Msa0608160:three_prime_UTR 30.0%
CTAGTTTCATTACATCTTGA+AGG - chr4_2:55193683-55193702 None:intergenic 30.0%
! TACACAAACTATTTGGGATG+TGG - chr4_2:55192069-55192088 None:intergenic 35.0%
GAGGATGTGTTTACAATTGA+TGG - chr4_2:55192400-55192419 None:intergenic 35.0%
AAATGTGATGTCCCTAACAA+TGG + chr4_2:55192530-55192549 Msa0608160:intron 35.0%
ATAACAATGTCATGTCTCCT+AGG + chr4_2:55192652-55192671 Msa0608160:intron 35.0%
ACACTTGAATAAAAGGCAAG+CGG - chr4_2:55192746-55192765 None:intergenic 35.0%
CATTATGTCTATGTACAGGT+GGG + chr4_2:55192849-55192868 Msa0608160:intron 35.0%
ATTATGTCTATGTACAGGTG+GGG + chr4_2:55192850-55192869 Msa0608160:intron 35.0%
! TGAAAAGCACATCAAAGAAG+TGG + chr4_2:55193115-55193134 Msa0608160:CDS 35.0%
! CACACTATTTAGAGTTCGTA+TGG + chr4_2:55193172-55193191 Msa0608160:CDS 35.0%
GAATTACCTCAACAGAAACA+AGG + chr4_2:55193325-55193344 Msa0608160:CDS 35.0%
AGGTTCGATAATCGATACTT+TGG - chr4_2:55193509-55193528 None:intergenic 35.0%
!! AAGTATCGATTATCGAACCT+AGG + chr4_2:55193509-55193528 Msa0608160:three_prime_UTR 35.0%
TCGGTTATCCTAGAATCATT+TGG - chr4_2:55193563-55193582 None:intergenic 35.0%
GGAAAGAGAAATTGCACAAA+GGG - chr4_2:55193739-55193758 None:intergenic 35.0%
! TACACAAACTATTTGGGATG+TGG - chr4_2:55192069-55192088 None:intergenic 35.0%
GAGGATGTGTTTACAATTGA+TGG - chr4_2:55192400-55192419 None:intergenic 35.0%
AAATGTGATGTCCCTAACAA+TGG + chr4_2:55192530-55192549 Msa0608160:intron 35.0%
ATAACAATGTCATGTCTCCT+AGG + chr4_2:55192652-55192671 Msa0608160:intron 35.0%
ACACTTGAATAAAAGGCAAG+CGG - chr4_2:55192746-55192765 None:intergenic 35.0%
CATTATGTCTATGTACAGGT+GGG + chr4_2:55192849-55192868 Msa0608160:intron 35.0%
ATTATGTCTATGTACAGGTG+GGG + chr4_2:55192850-55192869 Msa0608160:intron 35.0%
! TGAAAAGCACATCAAAGAAG+TGG + chr4_2:55193115-55193134 Msa0608160:CDS 35.0%
! CACACTATTTAGAGTTCGTA+TGG + chr4_2:55193172-55193191 Msa0608160:CDS 35.0%
GAATTACCTCAACAGAAACA+AGG + chr4_2:55193325-55193344 Msa0608160:CDS 35.0%
AGGTTCGATAATCGATACTT+TGG - chr4_2:55193509-55193528 None:intergenic 35.0%
!! AAGTATCGATTATCGAACCT+AGG + chr4_2:55193509-55193528 Msa0608160:three_prime_UTR 35.0%
TCGGTTATCCTAGAATCATT+TGG - chr4_2:55193563-55193582 None:intergenic 35.0%
GGAAAGAGAAATTGCACAAA+GGG - chr4_2:55193739-55193758 None:intergenic 35.0%
! CCATCTTGTGGGTTACATTT+GGG - chr4_2:55191904-55191923 None:intergenic 40.0%
! TCCATCTTGTGGGTTACATT+TGG - chr4_2:55191905-55191924 None:intergenic 40.0%
AAATGTAACCCACAAGATGG+AGG + chr4_2:55191904-55191923 Msa0608160:five_prime_UTR 40.0%
! GGGTGTTATGTGTCAAGTTT+AGG + chr4_2:55191971-55191990 Msa0608160:five_prime_UTR 40.0%
! TATTTGGGATGTGGTGTATG+TGG - chr4_2:55192060-55192079 None:intergenic 40.0%
GATGCCTGAAAGATTTCAGA+AGG + chr4_2:55192205-55192224 Msa0608160:CDS 40.0%
!! TCCACCTTCTGAAATCTTTC+AGG - chr4_2:55192212-55192231 None:intergenic 40.0%
AGCTAATTGAAGGAGATGGA+GGG + chr4_2:55192231-55192250 Msa0608160:CDS 40.0%
TAACCACCTTATTCTCCACT+AGG - chr4_2:55192437-55192456 None:intergenic 40.0%
AATAGAAAGTAGTCTCGGCA+AGG - chr4_2:55192562-55192581 None:intergenic 40.0%
AACACAACATTCATGGACCT+AGG - chr4_2:55192672-55192691 None:intergenic 40.0%
CATCGTGAACACAACATTCA+TGG - chr4_2:55192679-55192698 None:intergenic 40.0%
CACTTGAATAAAAGGCAAGC+GGG - chr4_2:55192745-55192764 None:intergenic 40.0%
CCTGTACATAGACATAATGG+TGG - chr4_2:55192848-55192867 None:intergenic 40.0%
CCACCATTATGTCTATGTAC+AGG + chr4_2:55192845-55192864 Msa0608160:intron 40.0%
CCACCTGTACATAGACATAA+TGG - chr4_2:55192851-55192870 None:intergenic 40.0%
CCATTATGTCTATGTACAGG+TGG + chr4_2:55192848-55192867 Msa0608160:intron 40.0%
TTATGTCTATGTACAGGTGG+GGG + chr4_2:55192851-55192870 Msa0608160:intron 40.0%
AAAGCACATCAAAGAAGTGG+AGG + chr4_2:55193118-55193137 Msa0608160:CDS 40.0%
CGTATGGAAGTGATAGAGAA+AGG + chr4_2:55193188-55193207 Msa0608160:CDS 40.0%
AGAGTATGAAGTCAAGGAAG+AGG + chr4_2:55193241-55193260 Msa0608160:CDS 40.0%
ACTTGTTTCCATCCAGCAAT+TGG + chr4_2:55193280-55193299 Msa0608160:CDS 40.0%
!! TTGCATCCTTGTTTCTGTTG+AGG - chr4_2:55193334-55193353 None:intergenic 40.0%
! ATGGCAGAAGTATACTCTCA+AGG + chr4_2:55193626-55193645 Msa0608160:three_prime_UTR 40.0%
ACTAGTTCACCACACTTGAT+AGG - chr4_2:55193711-55193730 None:intergenic 40.0%
GGGAAAGAGAAATTGCACAA+AGG - chr4_2:55193740-55193759 None:intergenic 40.0%
! CCATCTTGTGGGTTACATTT+GGG - chr4_2:55191904-55191923 None:intergenic 40.0%
! TCCATCTTGTGGGTTACATT+TGG - chr4_2:55191905-55191924 None:intergenic 40.0%
AAATGTAACCCACAAGATGG+AGG + chr4_2:55191904-55191923 Msa0608160:five_prime_UTR 40.0%
! GGGTGTTATGTGTCAAGTTT+AGG + chr4_2:55191971-55191990 Msa0608160:five_prime_UTR 40.0%
! TATTTGGGATGTGGTGTATG+TGG - chr4_2:55192060-55192079 None:intergenic 40.0%
GATGCCTGAAAGATTTCAGA+AGG + chr4_2:55192205-55192224 Msa0608160:CDS 40.0%
!! TCCACCTTCTGAAATCTTTC+AGG - chr4_2:55192212-55192231 None:intergenic 40.0%
AGCTAATTGAAGGAGATGGA+GGG + chr4_2:55192231-55192250 Msa0608160:CDS 40.0%
TAACCACCTTATTCTCCACT+AGG - chr4_2:55192437-55192456 None:intergenic 40.0%
AATAGAAAGTAGTCTCGGCA+AGG - chr4_2:55192562-55192581 None:intergenic 40.0%
AACACAACATTCATGGACCT+AGG - chr4_2:55192672-55192691 None:intergenic 40.0%
CATCGTGAACACAACATTCA+TGG - chr4_2:55192679-55192698 None:intergenic 40.0%
CACTTGAATAAAAGGCAAGC+GGG - chr4_2:55192745-55192764 None:intergenic 40.0%
CCTGTACATAGACATAATGG+TGG - chr4_2:55192848-55192867 None:intergenic 40.0%
CCACCATTATGTCTATGTAC+AGG + chr4_2:55192845-55192864 Msa0608160:intron 40.0%
CCACCTGTACATAGACATAA+TGG - chr4_2:55192851-55192870 None:intergenic 40.0%
CCATTATGTCTATGTACAGG+TGG + chr4_2:55192848-55192867 Msa0608160:intron 40.0%
TTATGTCTATGTACAGGTGG+GGG + chr4_2:55192851-55192870 Msa0608160:intron 40.0%
AAAGCACATCAAAGAAGTGG+AGG + chr4_2:55193118-55193137 Msa0608160:CDS 40.0%
CGTATGGAAGTGATAGAGAA+AGG + chr4_2:55193188-55193207 Msa0608160:CDS 40.0%
AGAGTATGAAGTCAAGGAAG+AGG + chr4_2:55193241-55193260 Msa0608160:CDS 40.0%
ACTTGTTTCCATCCAGCAAT+TGG + chr4_2:55193280-55193299 Msa0608160:CDS 40.0%
!! TTGCATCCTTGTTTCTGTTG+AGG - chr4_2:55193334-55193353 None:intergenic 40.0%
! ATGGCAGAAGTATACTCTCA+AGG + chr4_2:55193626-55193645 Msa0608160:three_prime_UTR 40.0%
ACTAGTTCACCACACTTGAT+AGG - chr4_2:55193711-55193730 None:intergenic 40.0%
GGGAAAGAGAAATTGCACAA+AGG - chr4_2:55193740-55193759 None:intergenic 40.0%
CCCAAATGTAACCCACAAGA+TGG + chr4_2:55191901-55191920 Msa0608160:five_prime_UTR 45.0%
TTTGCATGCCTCCATCTTGT+GGG - chr4_2:55191915-55191934 None:intergenic 45.0%
! TTTTGCATGCCTCCATCTTG+TGG - chr4_2:55191916-55191935 None:intergenic 45.0%
AGTGAAGCATGGGATCTCTT+TGG + chr4_2:55192149-55192168 Msa0608160:CDS 45.0%
! CTCTTTGGCACTCTTGCTAT+TGG + chr4_2:55192164-55192183 Msa0608160:CDS 45.0%
!! TGGCACTCTTGCTATTGGAA+AGG + chr4_2:55192169-55192188 Msa0608160:CDS 45.0%
TGCTATTGGAAAGGTCGTTG+AGG + chr4_2:55192178-55192197 Msa0608160:CDS 45.0%
GCCTGAAAGATTTCAGAAGG+TGG + chr4_2:55192208-55192227 Msa0608160:CDS 45.0%
CAGAAGGTGGAGCTAATTGA+AGG + chr4_2:55192221-55192240 Msa0608160:CDS 45.0%
GTGGAGCTAATTGAAGGAGA+TGG + chr4_2:55192227-55192246 Msa0608160:CDS 45.0%
GAGCTAATTGAAGGAGATGG+AGG + chr4_2:55192230-55192249 Msa0608160:CDS 45.0%
GCTAATTGAAGGAGATGGAG+GGG + chr4_2:55192232-55192251 Msa0608160:CDS 45.0%
CTCAAACTCACATTCACTCC+AGG + chr4_2:55192266-55192285 Msa0608160:CDS 45.0%
TGTAAACACATCCTCCGTTG+AGG + chr4_2:55192405-55192424 Msa0608160:intron 45.0%
CGTTGACCTAGTGGAGAATA+AGG + chr4_2:55192428-55192447 Msa0608160:intron 45.0%
TGACCTAGTGGAGAATAAGG+TGG + chr4_2:55192431-55192450 Msa0608160:intron 45.0%
CAAGGATCGCTCCATTGTTA+GGG - chr4_2:55192544-55192563 None:intergenic 45.0%
TGCCATCCAAAAAGGTCTAG+CGG + chr4_2:55192707-55192726 Msa0608160:intron 45.0%
!! GTTTTGGTCGGAGTTTGATC+AGG + chr4_2:55193044-55193063 Msa0608160:intron 45.0%
GGAGTTTGATCAGGTTTACC+TGG + chr4_2:55193053-55193072 Msa0608160:intron 45.0%
! TCTTTTAAACCAGTTGGGCC+AGG - chr4_2:55193074-55193093 None:intergenic 45.0%
AAAGAAGTGGAGGTGGTTGA+AGG + chr4_2:55193128-55193147 Msa0608160:CDS 45.0%
AAGAAGTGGAGGTGGTTGAA+GGG + chr4_2:55193129-55193148 Msa0608160:CDS 45.0%
TGAAGTCAAGGAAGAGGAAG+CGG + chr4_2:55193247-55193266 Msa0608160:CDS 45.0%
TTGCTGGATGGAAACAAGTG+CGG - chr4_2:55193279-55193298 None:intergenic 45.0%
TTGGCAGACGTTGTAGAAGT+TGG + chr4_2:55193299-55193318 Msa0608160:CDS 45.0%
CTAGACGTACCTATCAAGTG+TGG + chr4_2:55193699-55193718 Msa0608160:three_prime_UTR 45.0%
CCCAAATGTAACCCACAAGA+TGG + chr4_2:55191901-55191920 Msa0608160:five_prime_UTR 45.0%
TTTGCATGCCTCCATCTTGT+GGG - chr4_2:55191915-55191934 None:intergenic 45.0%
! TTTTGCATGCCTCCATCTTG+TGG - chr4_2:55191916-55191935 None:intergenic 45.0%
AGTGAAGCATGGGATCTCTT+TGG + chr4_2:55192149-55192168 Msa0608160:CDS 45.0%
! CTCTTTGGCACTCTTGCTAT+TGG + chr4_2:55192164-55192183 Msa0608160:CDS 45.0%
!! TGGCACTCTTGCTATTGGAA+AGG + chr4_2:55192169-55192188 Msa0608160:CDS 45.0%
TGCTATTGGAAAGGTCGTTG+AGG + chr4_2:55192178-55192197 Msa0608160:CDS 45.0%
GCCTGAAAGATTTCAGAAGG+TGG + chr4_2:55192208-55192227 Msa0608160:CDS 45.0%
CAGAAGGTGGAGCTAATTGA+AGG + chr4_2:55192221-55192240 Msa0608160:CDS 45.0%
GTGGAGCTAATTGAAGGAGA+TGG + chr4_2:55192227-55192246 Msa0608160:CDS 45.0%
GAGCTAATTGAAGGAGATGG+AGG + chr4_2:55192230-55192249 Msa0608160:CDS 45.0%
GCTAATTGAAGGAGATGGAG+GGG + chr4_2:55192232-55192251 Msa0608160:CDS 45.0%
CTCAAACTCACATTCACTCC+AGG + chr4_2:55192266-55192285 Msa0608160:CDS 45.0%
TGTAAACACATCCTCCGTTG+AGG + chr4_2:55192405-55192424 Msa0608160:intron 45.0%
CGTTGACCTAGTGGAGAATA+AGG + chr4_2:55192428-55192447 Msa0608160:intron 45.0%
TGACCTAGTGGAGAATAAGG+TGG + chr4_2:55192431-55192450 Msa0608160:intron 45.0%
CAAGGATCGCTCCATTGTTA+GGG - chr4_2:55192544-55192563 None:intergenic 45.0%
TGCCATCCAAAAAGGTCTAG+CGG + chr4_2:55192707-55192726 Msa0608160:intron 45.0%
!! GTTTTGGTCGGAGTTTGATC+AGG + chr4_2:55193044-55193063 Msa0608160:intron 45.0%
GGAGTTTGATCAGGTTTACC+TGG + chr4_2:55193053-55193072 Msa0608160:intron 45.0%
! TCTTTTAAACCAGTTGGGCC+AGG - chr4_2:55193074-55193093 None:intergenic 45.0%
AAAGAAGTGGAGGTGGTTGA+AGG + chr4_2:55193128-55193147 Msa0608160:CDS 45.0%
AAGAAGTGGAGGTGGTTGAA+GGG + chr4_2:55193129-55193148 Msa0608160:CDS 45.0%
TGAAGTCAAGGAAGAGGAAG+CGG + chr4_2:55193247-55193266 Msa0608160:CDS 45.0%
TTGCTGGATGGAAACAAGTG+CGG - chr4_2:55193279-55193298 None:intergenic 45.0%
TTGGCAGACGTTGTAGAAGT+TGG + chr4_2:55193299-55193318 Msa0608160:CDS 45.0%
CTAGACGTACCTATCAAGTG+TGG + chr4_2:55193699-55193718 Msa0608160:three_prime_UTR 45.0%
AGATCCCATGCTTCACTTGC+TGG - chr4_2:55192146-55192165 None:intergenic 50.0%
ATTGAAGGAGATGGAGGGGT+TGG + chr4_2:55192236-55192255 Msa0608160:CDS 50.0%
TTGAAGGAGATGGAGGGGTT+GGG + chr4_2:55192237-55192256 Msa0608160:CDS 50.0%
GCAAGGATCGCTCCATTGTT+AGG - chr4_2:55192545-55192564 None:intergenic 50.0%
CTATGTACAGGTGGGGGATT+CGG + chr4_2:55192857-55192876 Msa0608160:intron 50.0%
GCACATCAAAGAAGTGGAGG+TGG + chr4_2:55193121-55193140 Msa0608160:CDS 50.0%
AGAAGTGGAGGTGGTTGAAG+GGG + chr4_2:55193130-55193149 Msa0608160:CDS 50.0%
GAAGGGGGATGCTTAGATCT+TGG + chr4_2:55193146-55193165 Msa0608160:CDS 50.0%
GATGGAAACAAGTGCGGCAT+TGG - chr4_2:55193273-55193292 None:intergenic 50.0%
AACGTCTGCCAATTGCTGGA+TGG - chr4_2:55193291-55193310 None:intergenic 50.0%
CTACAACGTCTGCCAATTGC+TGG - chr4_2:55193295-55193314 None:intergenic 50.0%
TTATCGAACCTAGGTCGCCA+AGG + chr4_2:55193518-55193537 Msa0608160:three_prime_UTR 50.0%
TTCTTCAACCTTGGCGACCT+AGG - chr4_2:55193529-55193548 None:intergenic 50.0%
AGATCCCATGCTTCACTTGC+TGG - chr4_2:55192146-55192165 None:intergenic 50.0%
ATTGAAGGAGATGGAGGGGT+TGG + chr4_2:55192236-55192255 Msa0608160:CDS 50.0%
TTGAAGGAGATGGAGGGGTT+GGG + chr4_2:55192237-55192256 Msa0608160:CDS 50.0%
GCAAGGATCGCTCCATTGTT+AGG - chr4_2:55192545-55192564 None:intergenic 50.0%
CTATGTACAGGTGGGGGATT+CGG + chr4_2:55192857-55192876 Msa0608160:intron 50.0%
GCACATCAAAGAAGTGGAGG+TGG + chr4_2:55193121-55193140 Msa0608160:CDS 50.0%
AGAAGTGGAGGTGGTTGAAG+GGG + chr4_2:55193130-55193149 Msa0608160:CDS 50.0%
GAAGGGGGATGCTTAGATCT+TGG + chr4_2:55193146-55193165 Msa0608160:CDS 50.0%
GATGGAAACAAGTGCGGCAT+TGG - chr4_2:55193273-55193292 None:intergenic 50.0%
AACGTCTGCCAATTGCTGGA+TGG - chr4_2:55193291-55193310 None:intergenic 50.0%
CTACAACGTCTGCCAATTGC+TGG - chr4_2:55193295-55193314 None:intergenic 50.0%
TTATCGAACCTAGGTCGCCA+AGG + chr4_2:55193518-55193537 Msa0608160:three_prime_UTR 50.0%
TTCTTCAACCTTGGCGACCT+AGG - chr4_2:55193529-55193548 None:intergenic 50.0%
GATGTGGTGTATGTGGTGCG+TGG - chr4_2:55192053-55192072 None:intergenic 55.0%
ACGTGCCAGCAAGTGAAGCA+TGG + chr4_2:55192138-55192157 Msa0608160:CDS 55.0%
CGTGCCAGCAAGTGAAGCAT+GGG + chr4_2:55192139-55192158 Msa0608160:CDS 55.0%
CCACTAGGTCAACGCCTCAA+CGG - chr4_2:55192422-55192441 None:intergenic 55.0%
! CGCCGCTAGACCTTTTTGGA+TGG - chr4_2:55192712-55192731 None:intergenic 55.0%
TCAGGTTTACCTGGCCCAAC+TGG + chr4_2:55193062-55193081 Msa0608160:intron 55.0%
GAAGTGGAGGTGGTTGAAGG+GGG + chr4_2:55193131-55193150 Msa0608160:CDS 55.0%
GATGTGGTGTATGTGGTGCG+TGG - chr4_2:55192053-55192072 None:intergenic 55.0%
ACGTGCCAGCAAGTGAAGCA+TGG + chr4_2:55192138-55192157 Msa0608160:CDS 55.0%
CGTGCCAGCAAGTGAAGCAT+GGG + chr4_2:55192139-55192158 Msa0608160:CDS 55.0%
CCACTAGGTCAACGCCTCAA+CGG - chr4_2:55192422-55192441 None:intergenic 55.0%
! CGCCGCTAGACCTTTTTGGA+TGG - chr4_2:55192712-55192731 None:intergenic 55.0%
TCAGGTTTACCTGGCCCAAC+TGG + chr4_2:55193062-55193081 Msa0608160:intron 55.0%
GAAGTGGAGGTGGTTGAAGG+GGG + chr4_2:55193131-55193150 Msa0608160:CDS 55.0%
CTAGGTCAACGCCTCAACGG+AGG - chr4_2:55192419-55192438 None:intergenic 60.0%
!! CCGTTGAGGCGTTGACCTAG+TGG + chr4_2:55192419-55192438 Msa0608160:intron 60.0%
! GCTGCGCCGCTAGACCTTTT+TGG - chr4_2:55192716-55192735 None:intergenic 60.0%
CTAGGTCAACGCCTCAACGG+AGG - chr4_2:55192419-55192438 None:intergenic 60.0%
!! CCGTTGAGGCGTTGACCTAG+TGG + chr4_2:55192419-55192438 Msa0608160:intron 60.0%
! GCTGCGCCGCTAGACCTTTT+TGG - chr4_2:55192716-55192735 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 55191901 55193796 55191901 ID=Msa0608160;Name=Msa0608160
chr4_2 mRNA 55191901 55193796 55191901 ID=Msa0608160-mRNA-1;Parent=Msa0608160;Name=Msa0608160-mRNA-1;_AED=0.21;_eAED=0.21;_QI=203|1|1|1|1|1|2|435|159
chr4_2 exon 55191901 55192287 55191901 ID=Msa0608160-mRNA-1:exon:14002;Parent=Msa0608160-mRNA-1
chr4_2 exon 55193066 55193796 55193066 ID=Msa0608160-mRNA-1:exon:14003;Parent=Msa0608160-mRNA-1
chr4_2 five_prime_UTR 55191901 55192103 55191901 ID=Msa0608160-mRNA-1:five_prime_utr;Parent=Msa0608160-mRNA-1
chr4_2 CDS 55192104 55192287 55192104 ID=Msa0608160-mRNA-1:cds;Parent=Msa0608160-mRNA-1
chr4_2 CDS 55193066 55193361 55193066 ID=Msa0608160-mRNA-1:cds;Parent=Msa0608160-mRNA-1
chr4_2 three_prime_UTR 55193362 55193796 55193362 ID=Msa0608160-mRNA-1:three_prime_utr;Parent=Msa0608160-mRNA-1
Gene Sequence

>Msa0608160

ATGTTTGGTCAACTTGAGCATGAGTTAGAGCTGCACGTGCCAGCAAGTGAAGCATGGGATCTCTTTGGCACTCTTGCTATTGGAAAGGTCGTTGAGGAAGCGATGCCTGAAAGATTTCAGAAGGTGGAGCTAATTGAAGGAGATGGAGGGGTTGGGACTATTCTCAAACTCACATTCACTCCAGGTTTACCTGGCCCAACTGGTTTAAAAGAAAAGTTTACCAAGATTGATAATGAAAAGCACATCAAAGAAGTGGAGGTGGTTGAAGGGGGATGCTTAGATCTTGGATTCACACTATTTAGAGTTCGTATGGAAGTGATAGAGAAAGGTAAAGATTCAAGCATAATCAAAACTACATTAGAGTATGAAGTCAAGGAAGAGGAAGCGGCCAATGCCGCACTTGTTTCCATCCAGCAATTGGCAGACGTTGTAGAAGTTGGCAAGAATTACCTCAACAGAAACAAGGATGCAAAAGAATAA

Protein sequence

>Msa0608160

MFGQLEHELELHVPASEAWDLFGTLAIGKVVEEAMPERFQKVELIEGDGGVGTILKLTFTPGLPGPTGLKEKFTKIDNEKHIKEVEVVEGGCLDLGFTLFRVRMEVIEKGKDSSIIKTTLEYEVKEEEAANAALVSIQQLADVVEVGKNYLNRNKDAKE*