Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1230080 | XP_013444037.1 | 84.463 | 354 | 20 | 2 | 1 | 354 | 1 | 319 | 0.0 | 600 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1230080 | sp|Q9FLP6|SUMO2_ARATH | 63.636 | 77 | 28 | 0 | 197 | 273 | 12 | 88 | 6.69e-28 | 108 |
| Msa1230080 | sp|Q9FLP6|SUMO2_ARATH | 63.158 | 76 | 28 | 0 | 274 | 349 | 12 | 87 | 5.33e-23 | 95.1 |
| Msa1230080 | sp|Q9FLP6|SUMO2_ARATH | 55.000 | 80 | 32 | 1 | 116 | 195 | 12 | 87 | 7.38e-21 | 89.4 |
| Msa1230080 | sp|Q9FLP6|SUMO2_ARATH | 44.186 | 86 | 44 | 2 | 42 | 127 | 19 | 100 | 1.29e-13 | 69.7 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1230080 | G7ZWR8 | 84.463 | 354 | 20 | 2 | 1 | 354 | 1 | 319 | 0.0 | 600 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004840 | Msa1230080 | 0.840254 | 9.713616e-58 | -8.615850e-47 |
| Msa0038870 | Msa1230080 | 0.803193 | 3.917237e-49 | -8.615850e-47 |
| Msa0051860 | Msa1230080 | 0.812102 | 5.018345e-51 | -8.615850e-47 |
| Msa0058490 | Msa1230080 | 0.812573 | 3.961475e-51 | -8.615850e-47 |
| Msa0058510 | Msa1230080 | 0.810951 | 8.927994e-51 | -8.615850e-47 |
| Msa0065950 | Msa1230080 | 0.855333 | 6.768784e-62 | -8.615850e-47 |
| Msa0096980 | Msa1230080 | 0.825598 | 4.294819e-54 | -8.615850e-47 |
| Msa0604290 | Msa1230080 | 0.821479 | 3.950091e-53 | -8.615850e-47 |
| Msa0615490 | Msa1230080 | 0.822532 | 2.252416e-53 | -8.615850e-47 |
| Msa0635380 | Msa1230080 | 0.811761 | 5.955275e-51 | -8.615850e-47 |
| Msa0640940 | Msa1230080 | 0.804508 | 2.088306e-49 | -8.615850e-47 |
| Msa0642970 | Msa1230080 | 0.802898 | 4.509744e-49 | -8.615850e-47 |
| Msa0679360 | Msa1230080 | 0.810892 | 9.195859e-51 | -8.615850e-47 |
| Msa0682680 | Msa1230080 | 0.814131 | 1.800908e-51 | -8.615850e-47 |
| Msa0698540 | Msa1230080 | 0.819568 | 1.084807e-52 | -8.615850e-47 |
| Msa0732880 | Msa1230080 | 0.825961 | 3.523728e-54 | -8.615850e-47 |
| Msa0747260 | Msa1230080 | 0.814522 | 1.476142e-51 | -8.615850e-47 |
| Msa0763070 | Msa1230080 | 0.804190 | 2.432796e-49 | -8.615850e-47 |
| Msa0145010 | Msa1230080 | 0.828151 | 1.054385e-54 | -8.615850e-47 |
| Msa0206010 | Msa1230080 | 0.803867 | 2.839287e-49 | -8.615850e-47 |
| Msa0209500 | Msa1230080 | 0.802475 | 5.511921e-49 | -8.615850e-47 |
| Msa0212930 | Msa1230080 | 0.807135 | 5.860823e-50 | -8.615850e-47 |
| Msa0220240 | Msa1230080 | 0.805635 | 1.213825e-49 | -8.615850e-47 |
| Msa1230080 | Msa1266020 | 0.807672 | 4.509299e-50 | -8.615850e-47 |
| Msa1230080 | Msa1270660 | 0.804162 | 2.465955e-49 | -8.615850e-47 |
| Msa1230080 | Msa1270730 | 0.803016 | 4.261831e-49 | -8.615850e-47 |
| Msa1230080 | Msa1272620 | 0.869966 | 2.083389e-66 | -8.615850e-47 |
| Msa1230080 | Msa1272870 | 0.846248 | 2.447301e-59 | -8.615850e-47 |
| Msa1230080 | Msa1310400 | 0.918669 | 1.171480e-86 | -8.615850e-47 |
| Msa1230080 | Msa1337170 | 0.804758 | 1.852567e-49 | -8.615850e-47 |
| Msa1230080 | Msa1351540 | 0.801971 | 7.000474e-49 | -8.615850e-47 |
| Msa1230080 | Msa1397120 | 0.805938 | 1.048478e-49 | -8.615850e-47 |
| Msa1230080 | Msa1403890 | 0.801597 | 8.354498e-49 | -8.615850e-47 |
| Msa1230080 | Msa1422810 | 0.810551 | 1.089894e-50 | -8.615850e-47 |
| Msa1230080 | Msa1448630 | 0.803853 | 2.859626e-49 | -8.615850e-47 |
| Msa1230080 | Msa1458610 | 0.825305 | 5.038688e-54 | -8.615850e-47 |
| Msa0376910 | Msa1230080 | 0.800371 | 1.487218e-48 | -8.615850e-47 |
| Msa0382370 | Msa1230080 | 0.813785 | 2.147249e-51 | -8.615850e-47 |
| Msa0401560 | Msa1230080 | 0.808819 | 2.567689e-50 | -8.615850e-47 |
| Msa0471900 | Msa1230080 | 0.804291 | 2.318193e-49 | -8.615850e-47 |
| Msa0994370 | Msa1230080 | 0.827017 | 1.973497e-54 | -8.615850e-47 |
| Msa1023180 | Msa1230080 | 0.800210 | 1.603529e-48 | -8.615850e-47 |
| Msa1043050 | Msa1230080 | 0.805806 | 1.117383e-49 | -8.615850e-47 |
| Msa1071320 | Msa1230080 | 0.800145 | 1.653505e-48 | -8.615850e-47 |
| Msa0253200 | Msa1230080 | 0.810147 | 1.331900e-50 | -8.615850e-47 |
| Msa0257490 | Msa1230080 | 0.815163 | 1.064000e-51 | -8.615850e-47 |
| Msa0271360 | Msa1230080 | 0.802304 | 5.979388e-49 | -8.615850e-47 |
| Msa0281530 | Msa1230080 | 0.801158 | 1.027340e-48 | -8.615850e-47 |
| Msa0292030 | Msa1230080 | 0.811883 | 5.602094e-51 | -8.615850e-47 |
| Msa0296790 | Msa1230080 | 0.822057 | 2.903203e-53 | -8.615850e-47 |
| Msa0309880 | Msa1230080 | 0.805894 | 1.070697e-49 | -8.615850e-47 |
| Msa0311720 | Msa1230080 | 0.805794 | 1.124066e-49 | -8.615850e-47 |
| Msa0321690 | Msa1230080 | 0.809006 | 2.342082e-50 | -8.615850e-47 |
| Msa0330310 | Msa1230080 | 0.823813 | 1.131736e-53 | -8.615850e-47 |
| Msa0339910 | Msa1230080 | 0.810438 | 1.152854e-50 | -8.615850e-47 |
| Msa0363790 | Msa1230080 | 0.805909 | 1.062974e-49 | -8.615850e-47 |
| Msa1129550 | Msa1230080 | 0.805354 | 1.390222e-49 | -8.615850e-47 |
| Msa1129730 | Msa1230080 | 0.806629 | 7.498050e-50 | -8.615850e-47 |
| Msa1150710 | Msa1230080 | 0.812804 | 3.526284e-51 | -8.615850e-47 |
| Msa1186360 | Msa1230080 | 0.838305 | 3.111883e-57 | -8.615850e-47 |
| Msa0491000 | Msa1230080 | 0.801608 | 8.308016e-49 | -8.615850e-47 |
| Msa0510840 | Msa1230080 | 0.808295 | 3.322807e-50 | -8.615850e-47 |
| Msa0542290 | Msa1230080 | 0.831924 | 1.266689e-55 | -8.615850e-47 |
| Msa0542560 | Msa1230080 | 0.806342 | 8.618578e-50 | -8.615850e-47 |
| Msa0545080 | Msa1230080 | 0.803166 | 3.969419e-49 | -8.615850e-47 |
| Msa0547160 | Msa1230080 | 0.830406 | 2.990585e-55 | -8.615850e-47 |
| Msa0556060 | Msa1230080 | 0.803184 | 3.935444e-49 | -8.615850e-47 |
| Msa0600450 | Msa1230080 | 0.806064 | 9.860766e-50 | -8.615850e-47 |
| Msa0872440 | Msa1230080 | 0.814943 | 1.190699e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1230080 | MtrunA17_Chr8g0337911 | 90.735 | 313 | 24 | 1 | 42 | 354 | 59 | 366 | 0.0 | 587 |
| Msa1230080 | MtrunA17_Chr8g0337911 | 40.273 | 293 | 161 | 6 | 62 | 349 | 1 | 284 | 4.49e-62 | 202 |
| Msa1230080 | MtrunA17_Chr8g0337911 | 42.213 | 244 | 133 | 3 | 29 | 272 | 126 | 361 | 6.71e-58 | 191 |
| Msa1230080 | MtrunA17_Chr8g0337921 | 40.175 | 229 | 112 | 3 | 125 | 351 | 29 | 234 | 1.63e-54 | 179 |
| Msa1230080 | MtrunA17_Chr8g0337921 | 38.235 | 136 | 78 | 3 | 56 | 191 | 99 | 228 | 1.00e-24 | 100 |
| Msa1230080 | MtrunA17_Chr3g0099761 | 62.162 | 74 | 28 | 0 | 200 | 273 | 21 | 94 | 1.20e-27 | 104 |
| Msa1230080 | MtrunA17_Chr3g0099761 | 63.380 | 71 | 26 | 0 | 279 | 349 | 23 | 93 | 6.80e-23 | 91.7 |
| Msa1230080 | MtrunA17_Chr3g0099761 | 49.438 | 89 | 41 | 1 | 107 | 195 | 9 | 93 | 5.26e-21 | 86.7 |
| Msa1230080 | MtrunA17_Chr3g0099761 | 50.000 | 64 | 31 | 1 | 42 | 105 | 25 | 87 | 7.92e-14 | 67.0 |
| Msa1230080 | MtrunA17_Chr3g0099771 | 60.811 | 74 | 29 | 0 | 200 | 273 | 21 | 94 | 2.39e-27 | 103 |
| Msa1230080 | MtrunA17_Chr3g0099771 | 63.380 | 71 | 26 | 0 | 279 | 349 | 23 | 93 | 5.89e-23 | 92.0 |
| Msa1230080 | MtrunA17_Chr3g0099771 | 48.315 | 89 | 42 | 1 | 107 | 195 | 9 | 93 | 2.75e-20 | 84.7 |
| Msa1230080 | MtrunA17_Chr3g0099771 | 46.377 | 69 | 36 | 1 | 42 | 110 | 25 | 92 | 1.49e-13 | 66.2 |
| Msa1230080 | MtrunA17_Chr3g0099841 | 43.478 | 92 | 34 | 2 | 263 | 337 | 1 | 91 | 2.61e-14 | 68.2 |
| Msa1230080 | MtrunA17_Chr3g0099841 | 54.902 | 51 | 23 | 0 | 133 | 183 | 41 | 91 | 2.46e-11 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1230080 | AT5G55160.1 | 63.636 | 77 | 28 | 0 | 197 | 273 | 12 | 88 | 6.80e-29 | 108 |
| Msa1230080 | AT5G55160.1 | 63.158 | 76 | 28 | 0 | 274 | 349 | 12 | 87 | 5.42e-24 | 95.1 |
| Msa1230080 | AT5G55160.1 | 55.000 | 80 | 32 | 1 | 116 | 195 | 12 | 87 | 7.51e-22 | 89.4 |
| Msa1230080 | AT5G55160.1 | 44.186 | 86 | 44 | 2 | 42 | 127 | 19 | 100 | 1.31e-14 | 69.7 |
| Msa1230080 | AT4G26840.1 | 62.162 | 74 | 28 | 0 | 200 | 273 | 16 | 89 | 5.68e-27 | 103 |
| Msa1230080 | AT4G26840.1 | 64.789 | 71 | 25 | 0 | 279 | 349 | 18 | 88 | 6.38e-24 | 94.7 |
| Msa1230080 | AT4G26840.1 | 51.724 | 87 | 38 | 1 | 109 | 195 | 6 | 88 | 2.54e-21 | 87.8 |
| Msa1230080 | AT4G26840.1 | 51.562 | 64 | 30 | 1 | 42 | 105 | 20 | 82 | 4.73e-14 | 67.8 |
| Msa1230080 | AT5G55160.2 | 54.444 | 90 | 28 | 1 | 197 | 273 | 12 | 101 | 3.04e-25 | 99.0 |
| Msa1230080 | AT5G55160.2 | 53.933 | 89 | 28 | 1 | 274 | 349 | 12 | 100 | 6.50e-21 | 87.4 |
| Msa1230080 | AT5G55160.2 | 49.438 | 89 | 36 | 1 | 116 | 195 | 12 | 100 | 1.06e-19 | 84.0 |
| Msa1230080 | AT5G55160.2 | 46.250 | 80 | 39 | 2 | 48 | 127 | 38 | 113 | 2.97e-13 | 66.2 |
| Msa1230080 | AT5G55170.1 | 43.820 | 89 | 46 | 1 | 105 | 193 | 2 | 86 | 3.06e-14 | 68.9 |
| Msa1230080 | AT5G55170.1 | 43.243 | 74 | 42 | 0 | 197 | 270 | 13 | 86 | 5.55e-14 | 68.2 |
| Msa1230080 | AT5G55170.1 | 51.429 | 70 | 34 | 0 | 274 | 343 | 13 | 82 | 2.16e-13 | 66.2 |
| Msa1230080 | AT2G32765.1 | 37.895 | 95 | 50 | 1 | 266 | 351 | 6 | 100 | 8.97e-14 | 67.4 |
| Msa1230080 | AT2G32765.1 | 41.176 | 68 | 40 | 0 | 201 | 268 | 27 | 94 | 2.80e-13 | 65.9 |
| Msa1230080 | AT2G32765.1 | 40.741 | 81 | 46 | 1 | 114 | 194 | 19 | 97 | 5.92e-11 | 59.3 |
| Msa1230080 | AT5G55170.3 | 43.820 | 89 | 42 | 1 | 105 | 193 | 2 | 82 | 2.98e-13 | 65.9 |
Find 69 sgRNAs with CRISPR-Local
Find 284 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACTTCTTTCCTTTGGTTAC+TGG | 0.113284 | 8_2:-6070302 | Msa1230080:CDS |
| TTTCCTTTGGTTACTGGTTT+TGG | 0.169040 | 8_2:-6070296 | Msa1230080:CDS |
| TTTGATAGCAATGTAAATTA+TGG | 0.212713 | 8_2:-6065626 | Msa1230080:three_prime_UTR |
| GGAGTTGCATTTCTGTTTAA+TGG | 0.233057 | 8_2:-6065959 | Msa1230080:CDS |
| CGACATTGTCTGGATATTAA+TGG | 0.241676 | 8_2:-6067708 | Msa1230080:CDS |
| TCTTTATTAGTATCTATCTT+TGG | 0.243523 | 8_2:-6069907 | Msa1230080:CDS |
| GGTTCATTACTTCTTTCCTT+TGG | 0.320017 | 8_2:-6070309 | Msa1230080:CDS |
| CTTTATTAGTATCTATCTTT+GGG | 0.342177 | 8_2:-6069906 | Msa1230080:CDS |
| TGACCTGGCCCTTGACTTTG+AGG | 0.361593 | 8_2:+6066264 | None:intergenic |
| GAGTTGCATTTCTGTTTAAT+GGG | 0.373760 | 8_2:-6065958 | Msa1230080:CDS |
| ATACATGTACCCTCTTTGAT+TGG | 0.388364 | 8_2:+6070353 | None:intergenic |
| TTATGGTTATCGACATTGTC+TGG | 0.388531 | 8_2:-6067718 | Msa1230080:CDS |
| CTAGAGACACAGACCTCATC+TGG | 0.398020 | 8_2:+6065911 | None:intergenic |
| GTTTGATGGCAATGGTCTCC+AGG | 0.400873 | 8_2:-6068650 | Msa1230080:CDS |
| GCTGATATGTGTTTAGACTT+AGG | 0.407123 | 8_2:-6065748 | Msa1230080:exon |
| TCGGTGGATTTCAATTCAAT+TGG | 0.407448 | 8_2:-6066694 | Msa1230080:CDS |
| AAACTTTGTCCTTGATATTG+AGG | 0.419446 | 8_2:+6068428 | None:intergenic |
| GTTGCTGTAGGATGGGGTTG+AGG | 0.419994 | 8_2:-6067790 | Msa1230080:intron |
| TGTCCTTGATATTGAGGTCC+AGG | 0.423022 | 8_2:+6068434 | None:intergenic |
| GACTTAGGTACTACGGTAAG+TGG | 0.432208 | 8_2:-6065733 | Msa1230080:three_prime_UTR |
| TGGGAATAATGATAATGAAA+TGG | 0.437567 | 8_2:-6068497 | Msa1230080:CDS |
| CGGCTAACACGAACCTCGTT+TGG | 0.440260 | 8_2:+6066631 | None:intergenic |
| CAACAAACACAAACCTCATC+AGG | 0.453695 | 8_2:+6067639 | None:intergenic |
| CTTCAGATGCACATGGAAGA+TGG | 0.456997 | 8_2:-6068517 | Msa1230080:intron |
| GTTGGGTTTGAAGCTTCATT+CGG | 0.457836 | 8_2:-6066052 | Msa1230080:CDS |
| TTTCTTGTAGCTGCAAATGA+TGG | 0.476318 | 8_2:-6067444 | Msa1230080:intron |
| GGGAGACCATTGTCCAGATA+AGG | 0.491253 | 8_2:-6068629 | Msa1230080:intron |
| TATTAGTATCTATCTTTGGG+AGG | 0.495943 | 8_2:-6069903 | Msa1230080:CDS |
| GTAGGATGGGAATGTAACTT+TGG | 0.502737 | 8_2:-6068764 | Msa1230080:intron |
| TTATATACAGCCGTTACGGC+TGG | 0.502753 | 8_2:-6065651 | Msa1230080:three_prime_UTR |
| ATATTTGATGCAGCTGGGAA+TGG | 0.503354 | 8_2:-6065802 | Msa1230080:intron |
| ATTAGTATCTATCTTTGGGA+GGG | 0.504472 | 8_2:-6069902 | Msa1230080:intron |
| TATATTATATACAGCCGTTA+CGG | 0.506336 | 8_2:-6065655 | Msa1230080:three_prime_UTR |
| TTCAGATGCACATGGAAGAT+GGG | 0.520286 | 8_2:-6068516 | Msa1230080:intron |
| CTATCTTCTATGATCAGAGC+AGG | 0.522009 | 8_2:-6066295 | Msa1230080:CDS |
| ATGCAGCTGGGAATGGAAGA+TGG | 0.524131 | 8_2:-6065795 | Msa1230080:intron |
| GACCTCATCTGGAGTCTGCT+CGG | 0.525073 | 8_2:+6065922 | None:intergenic |
| GAAACTGAAGGTCAAGTGCC+AGG | 0.538121 | 8_2:-6067375 | Msa1230080:intron |
| TATCTGGACAATGGTCTCCC+TGG | 0.545542 | 8_2:+6068632 | None:intergenic |
| CTATCAAAGTCCAGCCGTAA+CGG | 0.546953 | 8_2:+6065641 | None:intergenic |
| CAGACTCAAGCTTAATGCCC+AGG | 0.559881 | 8_2:-6070330 | Msa1230080:CDS |
| CAACCTGGACCTCAATATCA+AGG | 0.560795 | 8_2:-6068437 | Msa1230080:CDS |
| GTTTAATGAGCATCACGTGC+GGG | 0.561035 | 8_2:-6066665 | Msa1230080:CDS |
| CTGCAGATGCAAATGGTGGA+TGG | 0.564540 | 8_2:-6066332 | Msa1230080:intron |
| GCGCATCAACCTCAAAGTCA+AGG | 0.564992 | 8_2:-6066273 | Msa1230080:CDS |
| CAACCTCAAAGTCAAGGGCC+AGG | 0.566066 | 8_2:-6066267 | Msa1230080:intron |
| GTACTAAATACTAGAGACAT+TGG | 0.571916 | 8_2:+6065681 | None:intergenic |
| GTGTTTAGACTTAGGTACTA+CGG | 0.579923 | 8_2:-6065740 | Msa1230080:exon |
| CGCATCAACCTCAAAGTCAA+GGG | 0.584028 | 8_2:-6066272 | Msa1230080:CDS |
| GACATGAAGCCAATCAAAGA+GGG | 0.585960 | 8_2:-6070362 | Msa1230080:CDS |
| TTGTAGCTGCAAATGATGGA+AGG | 0.589932 | 8_2:-6067440 | Msa1230080:intron |
| TGCTTACTGTAATCATCACT+CGG | 0.593563 | 8_2:-6066713 | Msa1230080:CDS |
| TTTGATGGCAATGGTCTCCA+GGG | 0.609879 | 8_2:-6068649 | Msa1230080:CDS |
| AAGGAAAGAAGTAATGAACC+TGG | 0.611385 | 8_2:+6070312 | None:intergenic |
| TGCACACATTAAGCTCAACC+TGG | 0.617593 | 8_2:-6068452 | Msa1230080:CDS |
| CACAAACCTTATCTGGACAA+TGG | 0.622681 | 8_2:+6068623 | None:intergenic |
| TGTTTAATGAGCATCACGTG+CGG | 0.628554 | 8_2:-6066666 | Msa1230080:CDS |
| AGCTGAGCAGACTCCTGATG+AGG | 0.630603 | 8_2:-6067652 | Msa1230080:intron |
| AATTGCACGCATGAAACTGA+AGG | 0.631327 | 8_2:-6067387 | Msa1230080:CDS |
| AGACATGAAGCCAATCAAAG+AGG | 0.636641 | 8_2:-6070363 | None:intergenic |
| AAGCCAAAACCAGTAACCAA+AGG | 0.640193 | 8_2:+6070293 | None:intergenic |
| GTCCGAGCAGACTCCAGATG+AGG | 0.644410 | 8_2:-6065924 | Msa1230080:intron |
| GGCAGAGCAGTCTCCAAACG+AGG | 0.646506 | 8_2:-6066644 | Msa1230080:intron |
| AGGAAAGAAGTAATGAACCT+GGG | 0.655338 | 8_2:+6070313 | None:intergenic |
| TTTGCTGCAGATGCAAATGG+TGG | 0.657290 | 8_2:-6066336 | Msa1230080:intron |
| TGCACTCTGATCATAAGAGA+TGG | 0.684429 | 8_2:+6068471 | None:intergenic |
| TATTTGGCTTCAGATGCACA+TGG | 0.697063 | 8_2:-6068524 | Msa1230080:intron |
| TTATTGTGATGAGCACTCTG+TGG | 0.727654 | 8_2:-6068698 | Msa1230080:CDS |
| TTACTGTAATCATCACTCGG+TGG | 0.782333 | 8_2:-6066710 | Msa1230080:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTTTTTTTATTATATAT+AGG | - | chr8_2:6066428-6066447 | Msa1230080:intron | 0.0% |
| !! | ATAATAAAAAAAAATTGAAG+AGG | + | chr8_2:6066424-6066443 | None:intergenic | 10.0% |
| !! | TATTGTATATCTATAATATA+TGG | - | chr8_2:6066516-6066535 | Msa1230080:intron | 10.0% |
| !! | ATTGTATATCTATAATATAT+GGG | - | chr8_2:6066517-6066536 | Msa1230080:intron | 10.0% |
| !!! | TTTTTTATTTTGTTTTGTAA+AGG | + | chr8_2:6068840-6068859 | None:intergenic | 10.0% |
| !!! | GTGATAAAAATATAGATTTT+AGG | - | chr8_2:6066095-6066114 | Msa1230080:intron | 15.0% |
| !! | CTAATTATTCAATATATCAT+GGG | - | chr8_2:6066480-6066499 | Msa1230080:intron | 15.0% |
| !! | AGAATTTAAACAACAATAAA+AGG | + | chr8_2:6068468-6068487 | None:intergenic | 15.0% |
| !!! | TTTATTGTTGTTTAAATTCT+TGG | - | chr8_2:6068468-6068487 | Msa1230080:CDS | 15.0% |
| !! | TGATAAAATGAAATCAAAAT+AGG | - | chr8_2:6069118-6069137 | Msa1230080:intron | 15.0% |
| !!! | TATAATCTTGTTTATATTCT+TGG | - | chr8_2:6069574-6069593 | Msa1230080:intron | 15.0% |
| !! | ATACAAATGAGTTATGTATA+TGG | - | chr8_2:6065739-6065758 | Msa1230080:exon | 20.0% |
| !!! | ATTTACTTTTATCCAATATC+AGG | - | chr8_2:6066007-6066026 | Msa1230080:CDS | 20.0% |
| !! | TCTTTATTAGTATCTATCTT+TGG | - | chr8_2:6066046-6066065 | Msa1230080:CDS | 20.0% |
| !! | CTTTATTAGTATCTATCTTT+GGG | - | chr8_2:6066047-6066066 | Msa1230080:CDS | 20.0% |
| !! | GCTAATTATTCAATATATCA+TGG | - | chr8_2:6066479-6066498 | Msa1230080:intron | 20.0% |
| !! | AAAAGAAAGATAGATATGTA+TGG | + | chr8_2:6066560-6066579 | None:intergenic | 20.0% |
| !!! | TTTTTTATGATTTCAAGTAC+TGG | + | chr8_2:6066873-6066892 | None:intergenic | 20.0% |
| !! | AATCATAAAAAATTCAACGA+CGG | - | chr8_2:6066881-6066900 | Msa1230080:intron | 20.0% |
| !! | CTATTTCAATTGTAAAAATG+AGG | - | chr8_2:6067010-6067029 | Msa1230080:intron | 20.0% |
| !!! | ATCATAACTCTATTACTTTT+TGG | - | chr8_2:6067281-6067300 | Msa1230080:intron | 20.0% |
| !! | TTATGACTTCCTAATATATT+TGG | - | chr8_2:6067413-6067432 | Msa1230080:CDS | 20.0% |
| !!! | TCAAATATGTTATTTTCTCA+AGG | + | chr8_2:6067628-6067647 | None:intergenic | 20.0% |
| !! | ATAGAATGATTATTGATCTA+AGG | + | chr8_2:6067821-6067840 | None:intergenic | 20.0% |
| !! | ATTATAGCTTATAATCTACT+AGG | - | chr8_2:6068084-6068103 | Msa1230080:intron | 20.0% |
| !!! | ATATGATAGTTTGGTAATTT+TGG | - | chr8_2:6068141-6068160 | Msa1230080:intron | 20.0% |
| !!! | TTTGATTTAATAGTTGAGTT+TGG | - | chr8_2:6068956-6068975 | Msa1230080:intron | 20.0% |
| !!! | TTTGGTTTTTTTAAGTAGTT+TGG | - | chr8_2:6068981-6069000 | Msa1230080:intron | 20.0% |
| !!! | TTTTTAAGTAGTTTGGTTTT+TGG | - | chr8_2:6068988-6069007 | Msa1230080:intron | 20.0% |
| !!! | TTTGATAGCAATGTAAATTA+TGG | - | chr8_2:6070327-6070346 | Msa1230080:CDS | 20.0% |
| ! | AAATAAAAACCAACCTACTT+TGG | + | chr8_2:6065965-6065984 | None:intergenic | 25.0% |
| ! | AGAGGAAAAAAAGTTTGATT+TGG | - | chr8_2:6066206-6066225 | Msa1230080:intron | 25.0% |
| !! | GAGGAAAAAAAGTTTGATTT+GGG | - | chr8_2:6066207-6066226 | Msa1230080:intron | 25.0% |
| !!! | AAAAAAAGTTTGATTTGGGT+GGG | - | chr8_2:6066211-6066230 | Msa1230080:intron | 25.0% |
| ! | ATGAGAAGCAAATTAATTGA+AGG | + | chr8_2:6066383-6066402 | None:intergenic | 25.0% |
| ! | GAGATGATTATTTAGTTGTT+TGG | + | chr8_2:6066609-6066628 | None:intergenic | 25.0% |
| ! | GAAAGTGAATAGAAAATAAG+TGG | + | chr8_2:6066637-6066656 | None:intergenic | 25.0% |
| ! | AATAGTCAGTTAAATGATAC+TGG | + | chr8_2:6066995-6067014 | None:intergenic | 25.0% |
| ! | TTTCAATTGTAAAAATGAGG+AGG | - | chr8_2:6067013-6067032 | Msa1230080:intron | 25.0% |
| !!! | TTTTAAGTACTAGTCTATGA+TGG | - | chr8_2:6067092-6067111 | Msa1230080:intron | 25.0% |
| ! | TCTCTTCACAATAATTTAGT+TGG | + | chr8_2:6067136-6067155 | None:intergenic | 25.0% |
| !! | GATAGTATGTTTCTAATGTA+TGG | - | chr8_2:6067154-6067173 | Msa1230080:intron | 25.0% |
| !! | TGTTTCTAATGTATGGTTAT+TGG | - | chr8_2:6067161-6067180 | Msa1230080:intron | 25.0% |
| !!! | TCTATTACTTTTTGGTTTGA+TGG | - | chr8_2:6067289-6067308 | Msa1230080:intron | 25.0% |
| ! | ATAAAAACACAAACCTTATC+TGG | + | chr8_2:6067340-6067359 | None:intergenic | 25.0% |
| ! | CAATTGATCGAAATAGTTAT+TGG | - | chr8_2:6067387-6067406 | Msa1230080:CDS | 25.0% |
| !! | TGGGAATAATGATAATGAAA+TGG | - | chr8_2:6067456-6067475 | Msa1230080:intron | 25.0% |
| ! | TTTCTGTAGCTAAAAATTGA+AGG | + | chr8_2:6067558-6067577 | None:intergenic | 25.0% |
| !!! | TTATTTTCTCAAGGTATTAC+CGG | + | chr8_2:6067619-6067638 | None:intergenic | 25.0% |
| !!! | CACTTTTGATTGAACTTAAA+GGG | + | chr8_2:6067675-6067694 | None:intergenic | 25.0% |
| !!! | ACACTTTTGATTGAACTTAA+AGG | + | chr8_2:6067676-6067695 | None:intergenic | 25.0% |
| ! | AATGTTACTCTGTAAATTCA+GGG | + | chr8_2:6067787-6067806 | None:intergenic | 25.0% |
| ! | TAATGTTACTCTGTAAATTC+AGG | + | chr8_2:6067788-6067807 | None:intergenic | 25.0% |
| ! | ATTTACAGAGTAACATTAGT+TGG | - | chr8_2:6067790-6067809 | Msa1230080:intron | 25.0% |
| ! | AATTACATTATGCAATAGCA+GGG | + | chr8_2:6068021-6068040 | None:intergenic | 25.0% |
| ! | AAATTACATTATGCAATAGC+AGG | + | chr8_2:6068022-6068041 | None:intergenic | 25.0% |
| ! | AAAAAGCTTATGGATGTTTA+TGG | - | chr8_2:6068218-6068237 | Msa1230080:intron | 25.0% |
| !! | TACTTTTGTATGTGTGATTT+CGG | - | chr8_2:6068354-6068373 | Msa1230080:intron | 25.0% |
| ! | AAGAGATAAAATAACAGTTG+TGG | - | chr8_2:6068398-6068417 | Msa1230080:intron | 25.0% |
| ! | AGAGATAAAATAACAGTTGT+GGG | - | chr8_2:6068399-6068418 | Msa1230080:intron | 25.0% |
| ! | AAACCTAATCAAACTGTTAA+TGG | - | chr8_2:6068746-6068765 | Msa1230080:CDS | 25.0% |
| ! | GTAAATTATCCTTCAAAGTT+TGG | - | chr8_2:6068918-6068937 | Msa1230080:intron | 25.0% |
| !!! | TAATAGTTGAGTTTGGTTTT+TGG | - | chr8_2:6068963-6068982 | Msa1230080:intron | 25.0% |
| ! | CTAATTAATACTATCAGCTA+AGG | - | chr8_2:6069051-6069070 | Msa1230080:intron | 25.0% |
| !!! | ATATACTGATTTGTGGTTTT+TGG | - | chr8_2:6069149-6069168 | Msa1230080:intron | 25.0% |
| !!! | TTTTCAATTCTTAGCCTTTT+TGG | - | chr8_2:6069719-6069738 | Msa1230080:intron | 25.0% |
| ! | TATGCTAATTTGGATAATGT+AGG | - | chr8_2:6069879-6069898 | Msa1230080:intron | 25.0% |
| ! | TAATTTGGATAATGTAGGTT+GGG | - | chr8_2:6069884-6069903 | Msa1230080:intron | 25.0% |
| !!! | TTGTCGATATTGTTTTGATT+TGG | - | chr8_2:6069969-6069988 | Msa1230080:intron | 25.0% |
| ! | GTGAAATAATGAACATATGT+TGG | + | chr8_2:6070081-6070100 | None:intergenic | 25.0% |
| ! | AAATTATATTTGATGCAGCT+GGG | - | chr8_2:6070146-6070165 | Msa1230080:intron | 25.0% |
| !!! | AAGTGGAATTAGTTTTTTGT+TGG | - | chr8_2:6070237-6070256 | Msa1230080:intron | 25.0% |
| !!! | AGTGGAATTAGTTTTTTGTT+GGG | - | chr8_2:6070238-6070257 | Msa1230080:intron | 25.0% |
| !!! | TTAGTTTTTTGTTGGGATAT+AGG | - | chr8_2:6070245-6070264 | Msa1230080:intron | 25.0% |
| ! | TATATTATATACAGCCGTTA+CGG | - | chr8_2:6070298-6070317 | Msa1230080:CDS | 25.0% |
| !! | GGGAAGATTTTGAAAGATTT+TGG | + | chr8_2:6065851-6065870 | None:intergenic | 30.0% |
| ! | TTTGTTTCTTTGTCCAAAGT+AGG | - | chr8_2:6065949-6065968 | Msa1230080:CDS | 30.0% |
| ! | ACTTTTATCCAATATCAGGT+AGG | - | chr8_2:6066011-6066030 | Msa1230080:CDS | 30.0% |
| TATTAGTATCTATCTTTGGG+AGG | - | chr8_2:6066050-6066069 | Msa1230080:CDS | 30.0% | |
| ! | ATTAGTATCTATCTTTGGGA+GGG | - | chr8_2:6066051-6066070 | Msa1230080:CDS | 30.0% |
| TTCTTTCCTTCATCAATCAA+TGG | + | chr8_2:6066136-6066155 | None:intergenic | 30.0% | |
| ! | AGGAAAGAAAGCATAAAGAA+TGG | - | chr8_2:6066147-6066166 | Msa1230080:intron | 30.0% |
| AAAACATTCTTTCCATCGTT+TGG | - | chr8_2:6066171-6066190 | Msa1230080:intron | 30.0% | |
| !! | GAAAAAAAGTTTGATTTGGG+TGG | - | chr8_2:6066210-6066229 | Msa1230080:intron | 30.0% |
| TGCTTCAAAGTTCAAAGTAA+GGG | + | chr8_2:6066316-6066335 | None:intergenic | 30.0% | |
| AAAGAAAGTAGTAGGAAAGA+AGG | + | chr8_2:6066670-6066689 | None:intergenic | 30.0% | |
| TCTATATTTACTTCCCTTCA+AGG | + | chr8_2:6066728-6066747 | None:intergenic | 30.0% | |
| ! | CTCTTGGTAGTAGATATTAA+TGG | + | chr8_2:6067040-6067059 | None:intergenic | 30.0% |
| TCTAATGTATGGTTATTGGA+TGG | - | chr8_2:6067165-6067184 | Msa1230080:intron | 30.0% | |
| ! | CATCTGAAGCCAAATATATT+AGG | + | chr8_2:6067425-6067444 | None:intergenic | 30.0% |
| AAACTTTGTCCTTGATATTG+AGG | + | chr8_2:6067528-6067547 | None:intergenic | 30.0% | |
| ATGTTACTCTGTAAATTCAG+GGG | + | chr8_2:6067786-6067805 | None:intergenic | 30.0% | |
| TCCTGGTTAGAAAATTCATT+CGG | + | chr8_2:6067879-6067898 | None:intergenic | 30.0% | |
| ! | TTGATAACAAGGTAAAATCC+TGG | + | chr8_2:6067896-6067915 | None:intergenic | 30.0% |
| ! | CCTCTTGATATTTGATAACA+AGG | + | chr8_2:6067907-6067926 | None:intergenic | 30.0% |
| ! | CCTTGTTATCAAATATCAAG+AGG | - | chr8_2:6067904-6067923 | Msa1230080:intron | 30.0% |
| AGCTAAATACTTTACCTCAT+TGG | - | chr8_2:6067964-6067983 | Msa1230080:intron | 30.0% | |
| TAGCTCAATGTTGTAAATAG+CGG | - | chr8_2:6067990-6068009 | Msa1230080:intron | 30.0% | |
| CAAAACCTGAAGTTAATATG+AGG | - | chr8_2:6068115-6068134 | Msa1230080:intron | 30.0% | |
| !!! | ACATCCATAAGCTTTTTCAA+TGG | + | chr8_2:6068215-6068234 | None:intergenic | 30.0% |
| !! | TTGTAGTTTTGCTCTTATGT+TGG | - | chr8_2:6068621-6068640 | Msa1230080:intron | 30.0% |
| !! | ATTGAGAGTAAGAGTATTCA+TGG | - | chr8_2:6068671-6068690 | Msa1230080:CDS | 30.0% |
| GAACCATTAACAGTTTGATT+AGG | + | chr8_2:6068752-6068771 | None:intergenic | 30.0% | |
| !!! | CTTCAAAGTTTGGTTTTTTC+CGG | - | chr8_2:6068928-6068947 | Msa1230080:intron | 30.0% |
| GATAGTATTAATTAGTCCAC+AGG | + | chr8_2:6069046-6069065 | None:intergenic | 30.0% | |
| ! | AGAGACATAAAAGTACAATC+AGG | + | chr8_2:6069086-6069105 | None:intergenic | 30.0% |
| !! | CAGAGATATATACTGATTTG+TGG | - | chr8_2:6069142-6069161 | Msa1230080:intron | 30.0% |
| ! | TCGACAACATTTTGTACTAA+TGG | + | chr8_2:6069448-6069467 | None:intergenic | 30.0% |
| TACAAAATGTTGTCGAATAG+TGG | - | chr8_2:6069452-6069471 | Msa1230080:intron | 30.0% | |
| AAACCAAATGTTCTCAATCA+CGG | + | chr8_2:6069540-6069559 | None:intergenic | 30.0% | |
| ATTGAAAAAATAGACTGACC+TGG | + | chr8_2:6069707-6069726 | None:intergenic | 30.0% | |
| ATGAGTGGTATATGCTAATT+TGG | - | chr8_2:6069869-6069888 | Msa1230080:intron | 30.0% | |
| CTAATTTGGATAATGTAGGT+TGG | - | chr8_2:6069883-6069902 | Msa1230080:intron | 30.0% | |
| CACTCAATTGAAAAAGCTTA+TGG | - | chr8_2:6069936-6069955 | Msa1230080:intron | 30.0% | |
| !!! | CGATATTGTTTTGATTTGGA+CGG | - | chr8_2:6069973-6069992 | Msa1230080:intron | 30.0% |
| GAGTTGCATTTCTGTTTAAT+GGG | - | chr8_2:6069995-6070014 | Msa1230080:intron | 30.0% | |
| GAAATTATATTTGATGCAGC+TGG | - | chr8_2:6070145-6070164 | Msa1230080:intron | 30.0% | |
| GTACTAAATACTAGAGACAT+TGG | + | chr8_2:6070275-6070294 | None:intergenic | 30.0% | |
| ATACATGTACCCTCTTTGAT+TGG | + | chr8_2:6065603-6065622 | None:intergenic | 35.0% | |
| AGGAAAGAAGTAATGAACCT+GGG | + | chr8_2:6065643-6065662 | None:intergenic | 35.0% | |
| AAGGAAAGAAGTAATGAACC+TGG | + | chr8_2:6065644-6065663 | None:intergenic | 35.0% | |
| GGTTCATTACTTCTTTCCTT+TGG | - | chr8_2:6065644-6065663 | Msa1230080:three_prime_UTR | 35.0% | |
| TACTTCTTTCCTTTGGTTAC+TGG | - | chr8_2:6065651-6065670 | Msa1230080:three_prime_UTR | 35.0% | |
| !!! | TTTCCTTTGGTTACTGGTTT+TGG | - | chr8_2:6065657-6065676 | Msa1230080:three_prime_UTR | 35.0% |
| CAAACCAAGGTATGATTGTT+GGG | + | chr8_2:6065871-6065890 | None:intergenic | 35.0% | |
| !!! | TTGGTTTGGTTTTCCTTCAT+GGG | - | chr8_2:6065883-6065902 | Msa1230080:intron | 35.0% |
| ! | CAAAGGATTTTATCCCATGA+AGG | + | chr8_2:6065899-6065918 | None:intergenic | 35.0% |
| TACATCAGGTAAGACAACAA+AGG | + | chr8_2:6065916-6065935 | None:intergenic | 35.0% | |
| ! | TTTGTTGTCTTACCTGATGT+AGG | - | chr8_2:6065915-6065934 | Msa1230080:intron | 35.0% |
| TTGTTGTCTTACCTGATGTA+GGG | - | chr8_2:6065916-6065935 | Msa1230080:intron | 35.0% | |
| GACAAAGAAACAAAGATGAG+CGG | + | chr8_2:6065943-6065962 | None:intergenic | 35.0% | |
| TTTCTTTGTCCAAAGTAGGT+TGG | - | chr8_2:6065953-6065972 | Msa1230080:CDS | 35.0% | |
| ! | TTGGTACCATTGATTGATGA+AGG | - | chr8_2:6066127-6066146 | Msa1230080:intron | 35.0% |
| GTGCTTCAAAGTTCAAAGTA+AGG | + | chr8_2:6066317-6066336 | None:intergenic | 35.0% | |
| GTAGTAGGAAAGAAGGTTAA+AGG | + | chr8_2:6066663-6066682 | None:intergenic | 35.0% | |
| GTGTAAGGAAAGAAAGTAGT+AGG | + | chr8_2:6066678-6066697 | None:intergenic | 35.0% | |
| CAAACATTAGTGTCCTTGAA+GGG | - | chr8_2:6066712-6066731 | Msa1230080:CDS | 35.0% | |
| CAGAATTGAGAAAAGACCTT+AGG | + | chr8_2:6066774-6066793 | None:intergenic | 35.0% | |
| TTTGCAACTTACAAGTTCTG+CGG | - | chr8_2:6066816-6066835 | Msa1230080:intron | 35.0% | |
| TCAACTGAAAAAGCTAGTGA+AGG | - | chr8_2:6067231-6067250 | Msa1230080:intron | 35.0% | |
| !!! | ACTTTTTGGTTTGATGGCAA+TGG | - | chr8_2:6067295-6067314 | Msa1230080:intron | 35.0% |
| AGAAACACTTACACATACAC+CGG | - | chr8_2:6067573-6067592 | Msa1230080:intron | 35.0% | |
| ! | ACCGAATGAATTTTCTAACC+AGG | - | chr8_2:6067875-6067894 | Msa1230080:intron | 35.0% |
| ACATTGAGCTATAACCAATG+AGG | + | chr8_2:6067981-6068000 | None:intergenic | 35.0% | |
| TAGAGAACGCAAAACAATAG+CGG | + | chr8_2:6068052-6068071 | None:intergenic | 35.0% | |
| ATACGCCTCATATTAACTTC+AGG | + | chr8_2:6068123-6068142 | None:intergenic | 35.0% | |
| ATGAGGCGTATATGATAGTT+TGG | - | chr8_2:6068132-6068151 | Msa1230080:intron | 35.0% | |
| !!! | TTGGTAATTTTGGTTGCTGT+AGG | - | chr8_2:6068151-6068170 | Msa1230080:intron | 35.0% |
| !!! | TAATTTTGGTTGCTGTAGGA+TGG | - | chr8_2:6068155-6068174 | Msa1230080:intron | 35.0% |
| !!! | AATTTTGGTTGCTGTAGGAT+GGG | - | chr8_2:6068156-6068175 | Msa1230080:intron | 35.0% |
| CACTCCATTGAAAAAGCTTA+TGG | - | chr8_2:6068208-6068227 | Msa1230080:intron | 35.0% | |
| TTATGGTTATCGACATTGTC+TGG | - | chr8_2:6068235-6068254 | Msa1230080:intron | 35.0% | |
| CGACATTGTCTGGATATTAA+TGG | - | chr8_2:6068245-6068264 | Msa1230080:intron | 35.0% | |
| !!! | GGAGTTGCTTTTCTGTTTAA+TGG | - | chr8_2:6068266-6068285 | Msa1230080:intron | 35.0% |
| TTTCTTGTAGCTGCAAATGA+TGG | - | chr8_2:6068509-6068528 | Msa1230080:CDS | 35.0% | |
| ! | TTGATTAGGTTTTACCGAAC+TGG | + | chr8_2:6068738-6068757 | None:intergenic | 35.0% |
| !!! | TATGTGGTTTTGTACCGAAA+CGG | - | chr8_2:6068809-6068828 | Msa1230080:intron | 35.0% |
| TTGTAAAGGTAGTTCCGTTT+CGG | + | chr8_2:6068826-6068845 | None:intergenic | 35.0% | |
| !! | CTGAACCATTCAGTTGTTTT+GGG | + | chr8_2:6068890-6068909 | None:intergenic | 35.0% |
| ! | ACTGAACCATTCAGTTGTTT+TGG | + | chr8_2:6068891-6068910 | None:intergenic | 35.0% |
| CGGAAAAAACCAAACTTTGA+AGG | + | chr8_2:6068930-6068949 | None:intergenic | 35.0% | |
| ACTATTAAATCAAACCGCAC+CGG | + | chr8_2:6068950-6068969 | None:intergenic | 35.0% | |
| !! | TTGTGGTTTTTGGATGTTGT+AGG | - | chr8_2:6069159-6069178 | Msa1230080:intron | 35.0% |
| TGCTTACTGTAATCATCACT+CGG | - | chr8_2:6069240-6069259 | Msa1230080:intron | 35.0% | |
| ! | TCGGTGGATTTCAATTCAAT+TGG | - | chr8_2:6069259-6069278 | Msa1230080:intron | 35.0% |
| GGTAAACAATGAAAAGATGC+CGG | + | chr8_2:6069345-6069364 | None:intergenic | 35.0% | |
| CTGTTGAATATCAGCTATAG+AGG | - | chr8_2:6069372-6069391 | Msa1230080:intron | 35.0% | |
| AATCCGTGATTGAGAACATT+TGG | - | chr8_2:6069534-6069553 | Msa1230080:intron | 35.0% | |
| !! | TAGCCTTTTTGGTCTAAAGT+TGG | - | chr8_2:6069730-6069749 | Msa1230080:intron | 35.0% |
| GAACCAACTTTAGACCAAAA+AGG | + | chr8_2:6069736-6069755 | None:intergenic | 35.0% | |
| TGTAACACTAGTTCATGATG+TGG | - | chr8_2:6069777-6069796 | Msa1230080:intron | 35.0% | |
| ! | GAAATATTACAGCTTTGGCA+GGG | + | chr8_2:6069810-6069829 | None:intergenic | 35.0% |
| CTGCCAAAGCTGTAATATTT+CGG | - | chr8_2:6069809-6069828 | Msa1230080:intron | 35.0% | |
| TTAGCATATACCACTCATCA+GGG | + | chr8_2:6069867-6069886 | None:intergenic | 35.0% | |
| ATTAGCATATACCACTCATC+AGG | + | chr8_2:6069868-6069887 | None:intergenic | 35.0% | |
| GGAGTTGCATTTCTGTTTAA+TGG | - | chr8_2:6069994-6070013 | Msa1230080:intron | 35.0% | |
| GCTGATATGTGTTTAGACTT+AGG | - | chr8_2:6070205-6070224 | Msa1230080:intron | 35.0% | |
| GTGTTTAGACTTAGGTACTA+CGG | - | chr8_2:6070213-6070232 | Msa1230080:intron | 35.0% | |
| AAGCCAAAACCAGTAACCAA+AGG | + | chr8_2:6065663-6065682 | None:intergenic | 40.0% | |
| !!! | ACTGGTTTTGGCTTTGATGA+AGG | - | chr8_2:6065669-6065688 | Msa1230080:three_prime_UTR | 40.0% |
| TCTTCCCAACAATCATACCT+TGG | - | chr8_2:6065864-6065883 | Msa1230080:intron | 40.0% | |
| CCAAACCAAGGTATGATTGT+TGG | + | chr8_2:6065872-6065891 | None:intergenic | 40.0% | |
| CCAACAATCATACCTTGGTT+TGG | - | chr8_2:6065869-6065888 | Msa1230080:intron | 40.0% | |
| CATGAAGGAAAACCAAACCA+AGG | + | chr8_2:6065884-6065903 | None:intergenic | 40.0% | |
| !!! | CTTGGTTTGGTTTTCCTTCA+TGG | - | chr8_2:6065882-6065901 | Msa1230080:intron | 40.0% |
| TGAAGCTTCCTACCTGATAT+TGG | + | chr8_2:6066022-6066041 | None:intergenic | 40.0% | |
| ! | AGATTTTAGGCACCTGTGTT+TGG | - | chr8_2:6066108-6066127 | Msa1230080:intron | 40.0% |
| CAATCAATGGTACCAAACAC+AGG | + | chr8_2:6066123-6066142 | None:intergenic | 40.0% | |
| ATTGCGAAGAAAGCTGGATT+AGG | - | chr8_2:6066262-6066281 | Msa1230080:intron | 40.0% | |
| ! | AAAAATTGAAGAGGCACGCA+TGG | + | chr8_2:6066415-6066434 | None:intergenic | 40.0% |
| ! | GGATGACGAAAGAAAGTGTA+AGG | + | chr8_2:6066693-6066712 | None:intergenic | 40.0% |
| CCTTCAAGGACACTAATGTT+TGG | + | chr8_2:6066714-6066733 | None:intergenic | 40.0% | |
| CCAAACATTAGTGTCCTTGA+AGG | - | chr8_2:6066711-6066730 | Msa1230080:CDS | 40.0% | |
| TAAGTGTTCTCTGAGTCCTA+AGG | - | chr8_2:6066755-6066774 | Msa1230080:CDS | 40.0% | |
| TGACGATAGATATCGTCTCT+TGG | + | chr8_2:6067056-6067075 | None:intergenic | 40.0% | |
| GAGACGATATCTATCGTCAT+TGG | - | chr8_2:6067057-6067076 | Msa1230080:intron | 40.0% | |
| GTATGGTTATTGGATGGTGT+AGG | - | chr8_2:6067171-6067190 | Msa1230080:intron | 40.0% | |
| GTTATTGGATGGTGTAGGAT+GGG | - | chr8_2:6067176-6067195 | Msa1230080:intron | 40.0% | |
| GTAGGATGGGAATGTAACTT+TGG | - | chr8_2:6067189-6067208 | Msa1230080:intron | 40.0% | |
| TTATTGTGATGAGCACTCTG+TGG | - | chr8_2:6067255-6067274 | Msa1230080:intron | 40.0% | |
| CACAAACCTTATCTGGACAA+TGG | + | chr8_2:6067333-6067352 | None:intergenic | 40.0% | |
| ! | TATTTGGCTTCAGATGCACA+TGG | - | chr8_2:6067429-6067448 | Msa1230080:CDS | 40.0% |
| TTCAGATGCACATGGAAGAT+GGG | - | chr8_2:6067437-6067456 | Msa1230080:CDS | 40.0% | |
| TGCACTCTGATCATAAGAGA+TGG | + | chr8_2:6067485-6067504 | None:intergenic | 40.0% | |
| ! | CAAAAGTGTAAGTGCTACGT+AGG | - | chr8_2:6067687-6067706 | Msa1230080:CDS | 40.0% |
| ACCATCAATGACACTTTCAG+TGG | + | chr8_2:6067930-6067949 | None:intergenic | 40.0% | |
| !!! | ATTTTGGTTGCTGTAGGATG+GGG | - | chr8_2:6068157-6068176 | Msa1230080:intron | 40.0% |
| CAACAAACACAAACCTCATC+AGG | + | chr8_2:6068317-6068336 | None:intergenic | 40.0% | |
| ! | TTGTAGCTGCAAATGATGGA+AGG | - | chr8_2:6068513-6068532 | Msa1230080:CDS | 40.0% |
| AATTGCACGCATGAAACTGA+AGG | - | chr8_2:6068566-6068585 | Msa1230080:intron | 40.0% | |
| ATTAATAGCGTTACCGAACC+TGG | + | chr8_2:6068599-6068618 | None:intergenic | 40.0% | |
| ! | GAGTATTCATGGTTCTGTTC+AGG | - | chr8_2:6068682-6068701 | Msa1230080:CDS | 40.0% |
| ! | ATTCATGGTTCTGTTCAGGA+AGG | - | chr8_2:6068686-6068705 | Msa1230080:CDS | 40.0% |
| ACTGGTGTAACGACTTAGTT+TGG | + | chr8_2:6068720-6068739 | None:intergenic | 40.0% | |
| ACTAAGTCGTTACACCAGTT+CGG | - | chr8_2:6068721-6068740 | Msa1230080:CDS | 40.0% | |
| ACCACTGTACAAGTTCGTTA+GGG | + | chr8_2:6068776-6068795 | None:intergenic | 40.0% | |
| AACCACTGTACAAGTTCGTT+AGG | + | chr8_2:6068777-6068796 | None:intergenic | 40.0% | |
| AACGAACTTGTACAGTGGTT+TGG | - | chr8_2:6068777-6068796 | Msa1230080:intron | 40.0% | |
| !! | TTGTACAGTGGTTTGGTGTA+TGG | - | chr8_2:6068784-6068803 | Msa1230080:intron | 40.0% |
| !! | TGTACAGTGGTTTGGTGTAT+GGG | - | chr8_2:6068785-6068804 | Msa1230080:intron | 40.0% |
| !!! | AAGTTTGGTTTTTTCCGGTG+CGG | - | chr8_2:6068933-6068952 | Msa1230080:intron | 40.0% |
| TAGTTGAACTCACAAACCTG+TGG | - | chr8_2:6069027-6069046 | Msa1230080:intron | 40.0% | |
| !! | GGTTTTTGGATGTTGTAGGA+TGG | - | chr8_2:6069163-6069182 | Msa1230080:intron | 40.0% |
| TTACTGTAATCATCACTCGG+TGG | - | chr8_2:6069243-6069262 | Msa1230080:intron | 40.0% | |
| TGTTTAATGAGCATCACGTG+CGG | - | chr8_2:6069287-6069306 | Msa1230080:intron | 40.0% | |
| CTGATATTCAACAGCACTAG+TGG | + | chr8_2:6069366-6069385 | None:intergenic | 40.0% | |
| ! | CATTTTGCTGCAGATGCAAA+TGG | - | chr8_2:6069614-6069633 | Msa1230080:intron | 40.0% |
| CTATCTTCTATGATCAGAGC+AGG | - | chr8_2:6069658-6069677 | Msa1230080:intron | 40.0% | |
| ! | CGAAATATTACAGCTTTGGC+AGG | + | chr8_2:6069811-6069830 | None:intergenic | 40.0% |
| TGGCCGAAATATTACAGCTT+TGG | + | chr8_2:6069815-6069834 | None:intergenic | 40.0% | |
| CAATTAGAAACCCTGATGAG+TGG | - | chr8_2:6069854-6069873 | Msa1230080:intron | 40.0% | |
| ! | GTTGGGTTTGAAGCTTCATT+CGG | - | chr8_2:6069901-6069920 | Msa1230080:intron | 40.0% |
| ATATTTGATGCAGCTGGGAA+TGG | - | chr8_2:6070151-6070170 | Msa1230080:intron | 40.0% | |
| CTGTCAAAGCAACCAAACGA+TGG | + | chr8_2:6066186-6066205 | None:intergenic | 45.0% | |
| ! | GTTTGGTTGCTTTGACAGAG+AGG | - | chr8_2:6066188-6066207 | Msa1230080:intron | 45.0% |
| !! | GCAGGGAAAGTATTTGACAG+TGG | + | chr8_2:6066239-6066258 | None:intergenic | 45.0% |
| ATCCAGCTTTCTTCGCAATC+TGG | + | chr8_2:6066261-6066280 | None:intergenic | 45.0% | |
| ! | GTTGCAAAGTGATGACGTCT+CGG | + | chr8_2:6066804-6066823 | None:intergenic | 45.0% |
| CGGTGGATCATCTTCATAAG+TGG | - | chr8_2:6066836-6066855 | Msa1230080:intron | 45.0% | |
| GGTTATTGGATGGTGTAGGA+TGG | - | chr8_2:6067175-6067194 | Msa1230080:intron | 45.0% | |
| ! | TTTGATGGCAATGGTCTCCA+GGG | - | chr8_2:6067304-6067323 | Msa1230080:intron | 45.0% |
| CTTCAGATGCACATGGAAGA+TGG | - | chr8_2:6067436-6067455 | Msa1230080:CDS | 45.0% | |
| TGCACACATTAAGCTCAACC+TGG | - | chr8_2:6067501-6067520 | Msa1230080:intron | 45.0% | |
| CAACCTGGACCTCAATATCA+AGG | - | chr8_2:6067516-6067535 | Msa1230080:intron | 45.0% | |
| TGTCCTTGATATTGAGGTCC+AGG | + | chr8_2:6067522-6067541 | None:intergenic | 45.0% | |
| !! | GCCACTGAAAGTGTCATTGA+TGG | - | chr8_2:6067926-6067945 | Msa1230080:intron | 45.0% |
| ACCCTAACGAACTTGTACAG+TGG | - | chr8_2:6068772-6068791 | Msa1230080:intron | 45.0% | |
| !! | GGTTTGGTGTATGGGTTATG+TGG | - | chr8_2:6068793-6068812 | Msa1230080:intron | 45.0% |
| CTGCACCCAAAACAACTGAA+TGG | - | chr8_2:6068882-6068901 | Msa1230080:intron | 45.0% | |
| GTTTAATGAGCATCACGTGC+GGG | - | chr8_2:6069288-6069307 | Msa1230080:intron | 45.0% | |
| TTTGCTGCAGATGCAAATGG+TGG | - | chr8_2:6069617-6069636 | Msa1230080:intron | 45.0% | |
| CGCATCAACCTCAAAGTCAA+GGG | - | chr8_2:6069681-6069700 | Msa1230080:intron | 45.0% | |
| GACTTAGGTACTACGGTAAG+TGG | - | chr8_2:6070220-6070239 | Msa1230080:intron | 45.0% | |
| TTATATACAGCCGTTACGGC+TGG | - | chr8_2:6070302-6070321 | Msa1230080:CDS | 45.0% | |
| CTATCAAAGTCCAGCCGTAA+CGG | + | chr8_2:6070315-6070334 | None:intergenic | 45.0% | |
| CAGACTCAAGCTTAATGCCC+AGG | - | chr8_2:6065623-6065642 | Msa1230080:three_prime_UTR | 50.0% | |
| GCTTTCTTCGCAATCTGGCA+GGG | + | chr8_2:6066256-6066275 | None:intergenic | 50.0% | |
| AGCTTTCTTCGCAATCTGGC+AGG | + | chr8_2:6066257-6066276 | None:intergenic | 50.0% | |
| TGCCAGATTGCGAAGAAAGC+TGG | - | chr8_2:6066256-6066275 | Msa1230080:intron | 50.0% | |
| ! | AGTGATGACGTCTCGGTCTA+AGG | + | chr8_2:6066797-6066816 | None:intergenic | 50.0% |
| GCAACTTACAAGTTCTGCGG+TGG | - | chr8_2:6066819-6066838 | Msa1230080:intron | 50.0% | |
| ! | GTTTGATGGCAATGGTCTCC+AGG | - | chr8_2:6067303-6067322 | Msa1230080:intron | 50.0% |
| TATCTGGACAATGGTCTCCC+TGG | + | chr8_2:6067324-6067343 | None:intergenic | 50.0% | |
| GGGAGACCATTGTCCAGATA+AGG | - | chr8_2:6067324-6067343 | Msa1230080:intron | 50.0% | |
| GTCACAGTTTGTGTCGTGTC+CGG | + | chr8_2:6067595-6067614 | None:intergenic | 50.0% | |
| CACGACACAAACTGTGACAC+CGG | - | chr8_2:6067597-6067616 | Msa1230080:intron | 50.0% | |
| GAAACTGAAGGTCAAGTGCC+AGG | - | chr8_2:6068578-6068597 | Msa1230080:intron | 50.0% | |
| TGAAGGTCAAGTGCCAGGTT+CGG | - | chr8_2:6068583-6068602 | Msa1230080:intron | 50.0% | |
| CAAACGAGGTTCGTGTTAGC+CGG | - | chr8_2:6069323-6069342 | Msa1230080:intron | 50.0% | |
| ! | CTGCAGATGCAAATGGTGGA+TGG | - | chr8_2:6069621-6069640 | Msa1230080:intron | 50.0% |
| GCGCATCAACCTCAAAGTCA+AGG | - | chr8_2:6069680-6069699 | Msa1230080:intron | 50.0% | |
| TTCGGCCACTTCATGTGATG+TGG | - | chr8_2:6069827-6069846 | Msa1230080:intron | 50.0% | |
| GCTGACCACATCACATGAAG+TGG | + | chr8_2:6069835-6069854 | None:intergenic | 50.0% | |
| CTAGAGACACAGACCTCATC+TGG | + | chr8_2:6070045-6070064 | None:intergenic | 50.0% | |
| ATGCAGCTGGGAATGGAAGA+TGG | - | chr8_2:6070158-6070177 | Msa1230080:intron | 50.0% | |
| AGATGAGCGGACCCTACATC+AGG | + | chr8_2:6065930-6065949 | None:intergenic | 55.0% | |
| GTTGCTGTAGGATGGGGTTG+AGG | - | chr8_2:6068163-6068182 | Msa1230080:intron | 55.0% | |
| AGCTGAGCAGACTCCTGATG+AGG | - | chr8_2:6068301-6068320 | Msa1230080:intron | 55.0% | |
| CGGCTAACACGAACCTCGTT+TGG | + | chr8_2:6069325-6069344 | None:intergenic | 55.0% | |
| CAACCTCAAAGTCAAGGGCC+AGG | - | chr8_2:6069686-6069705 | Msa1230080:intron | 55.0% | |
| TGACCTGGCCCTTGACTTTG+AGG | + | chr8_2:6069692-6069711 | None:intergenic | 55.0% | |
| ! | GACCTCATCTGGAGTCTGCT+CGG | + | chr8_2:6070034-6070053 | None:intergenic | 55.0% |
| GGCAGAGCAGTCTCCAAACG+AGG | - | chr8_2:6069309-6069328 | Msa1230080:intron | 60.0% | |
| GTCCGAGCAGACTCCAGATG+AGG | - | chr8_2:6070029-6070048 | Msa1230080:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 6065594 | 6070381 | 6065594 | ID=Msa1230080;Name=Msa1230080 |
| chr8_2 | mRNA | 6065594 | 6070381 | 6065594 | ID=Msa1230080-mRNA-1;Parent=Msa1230080;Name=Msa1230080-mRNA-1;_AED=0.10;_eAED=0.14;_QI=0|0.77|0.8|0.9|1|1|10|161|354 |
| chr8_2 | exon | 6065594 | 6065811 | 6065594 | ID=Msa1230080-mRNA-1:exon:2178;Parent=Msa1230080-mRNA-1 |
| chr8_2 | exon | 6065925 | 6066074 | 6065925 | ID=Msa1230080-mRNA-1:exon:2177;Parent=Msa1230080-mRNA-1 |
| chr8_2 | exon | 6066268 | 6066348 | 6066268 | ID=Msa1230080-mRNA-1:exon:2176;Parent=Msa1230080-mRNA-1 |
| chr8_2 | exon | 6066645 | 6066794 | 6066645 | ID=Msa1230080-mRNA-1:exon:2175;Parent=Msa1230080-mRNA-1 |
| chr8_2 | exon | 6067376 | 6067456 | 6067376 | ID=Msa1230080-mRNA-1:exon:2174;Parent=Msa1230080-mRNA-1 |
| chr8_2 | exon | 6067653 | 6067802 | 6067653 | ID=Msa1230080-mRNA-1:exon:2173;Parent=Msa1230080-mRNA-1 |
| chr8_2 | exon | 6068432 | 6068533 | 6068432 | ID=Msa1230080-mRNA-1:exon:2172;Parent=Msa1230080-mRNA-1 |
| chr8_2 | exon | 6068630 | 6068782 | 6068630 | ID=Msa1230080-mRNA-1:exon:2171;Parent=Msa1230080-mRNA-1 |
| chr8_2 | exon | 6069903 | 6069946 | 6069903 | ID=Msa1230080-mRNA-1:exon:2170;Parent=Msa1230080-mRNA-1 |
| chr8_2 | exon | 6070285 | 6070381 | 6070285 | ID=Msa1230080-mRNA-1:exon:2169;Parent=Msa1230080-mRNA-1 |
| chr8_2 | CDS | 6070285 | 6070381 | 6070285 | ID=Msa1230080-mRNA-1:cds;Parent=Msa1230080-mRNA-1 |
| chr8_2 | CDS | 6069903 | 6069946 | 6069903 | ID=Msa1230080-mRNA-1:cds;Parent=Msa1230080-mRNA-1 |
| chr8_2 | CDS | 6068630 | 6068782 | 6068630 | ID=Msa1230080-mRNA-1:cds;Parent=Msa1230080-mRNA-1 |
| chr8_2 | CDS | 6068432 | 6068533 | 6068432 | ID=Msa1230080-mRNA-1:cds;Parent=Msa1230080-mRNA-1 |
| chr8_2 | CDS | 6067653 | 6067802 | 6067653 | ID=Msa1230080-mRNA-1:cds;Parent=Msa1230080-mRNA-1 |
| chr8_2 | CDS | 6067376 | 6067456 | 6067376 | ID=Msa1230080-mRNA-1:cds;Parent=Msa1230080-mRNA-1 |
| chr8_2 | CDS | 6066645 | 6066794 | 6066645 | ID=Msa1230080-mRNA-1:cds;Parent=Msa1230080-mRNA-1 |
| chr8_2 | CDS | 6066268 | 6066348 | 6066268 | ID=Msa1230080-mRNA-1:cds;Parent=Msa1230080-mRNA-1 |
| chr8_2 | CDS | 6065925 | 6066074 | 6065925 | ID=Msa1230080-mRNA-1:cds;Parent=Msa1230080-mRNA-1 |
| chr8_2 | CDS | 6065755 | 6065811 | 6065755 | ID=Msa1230080-mRNA-1:cds;Parent=Msa1230080-mRNA-1 |
| chr8_2 | three_prime_UTR | 6065594 | 6065754 | 6065594 | ID=Msa1230080-mRNA-1:three_prime_utr;Parent=Msa1230080-mRNA-1 |
| Gene Sequence |
| Protein sequence |
