Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1440430 | sp|Q9XI99|USPL1_ARATH | 38.790 | 281 | 160 | 5 | 1 | 276 | 7 | 280 | 7.26e-66 | 210 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1440430 | G7J6J4 | 97.193 | 285 | 8 | 0 | 1 | 285 | 1 | 285 | 0.0 | 578 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0013270 | Msa1440430 | 0.806590 | 7.641392e-50 | -8.615850e-47 |
| Msa0015150 | Msa1440430 | 0.819111 | 1.378416e-52 | -8.615850e-47 |
| Msa0025160 | Msa1440430 | 0.845622 | 3.620780e-59 | -8.615850e-47 |
| Msa0029990 | Msa1440430 | 0.805604 | 1.231752e-49 | -8.615850e-47 |
| Msa0038530 | Msa1440430 | 0.846340 | 2.309407e-59 | -8.615850e-47 |
| Msa0044160 | Msa1440430 | 0.820178 | 7.868654e-53 | -8.615850e-47 |
| Msa0044780 | Msa1440430 | -0.801372 | 9.290446e-49 | -8.615850e-47 |
| Msa0045810 | Msa1440430 | 0.818392 | 2.007710e-52 | -8.615850e-47 |
| Msa0046200 | Msa1440430 | 0.801948 | 7.074833e-49 | -8.615850e-47 |
| Msa0064120 | Msa1440430 | 0.800987 | 1.113525e-48 | -8.615850e-47 |
| Msa0071840 | Msa1440430 | 0.814894 | 1.221266e-51 | -8.615850e-47 |
| Msa0072520 | Msa1440430 | 0.845132 | 4.915021e-59 | -8.615850e-47 |
| Msa0079880 | Msa1440430 | 0.804104 | 2.535150e-49 | -8.615850e-47 |
| Msa0081030 | Msa1440430 | 0.803141 | 4.015850e-49 | -8.615850e-47 |
| Msa0086250 | Msa1440430 | 0.831878 | 1.300523e-55 | -8.615850e-47 |
| Msa0091350 | Msa1440430 | 0.802508 | 5.427784e-49 | -8.615850e-47 |
| Msa0092350 | Msa1440430 | 0.802521 | 5.392913e-49 | -8.615850e-47 |
| Msa0106540 | Msa1440430 | 0.802812 | 4.696136e-49 | -8.615850e-47 |
| Msa0108880 | Msa1440430 | 0.816764 | 4.673884e-52 | -8.615850e-47 |
| Msa1349690 | Msa1440430 | 0.806100 | 9.691243e-50 | -8.615850e-47 |
| Msa1358290 | Msa1440430 | 0.804398 | 2.202144e-49 | -8.615850e-47 |
| Msa1364680 | Msa1440430 | 0.802817 | 4.686671e-49 | -8.615850e-47 |
| Msa1381010 | Msa1440430 | 0.835320 | 1.796891e-56 | -8.615850e-47 |
| Msa1381030 | Msa1440430 | 0.994888 | 4.327566e-211 | -8.615850e-47 |
| Msa1384150 | Msa1440430 | 0.801846 | 7.426369e-49 | -8.615850e-47 |
| Msa1405830 | Msa1440430 | 0.804284 | 2.325386e-49 | -8.615850e-47 |
| Msa1406720 | Msa1440430 | 0.823924 | 1.065866e-53 | -8.615850e-47 |
| Msa1407810 | Msa1440430 | 0.825137 | 5.521764e-54 | -8.615850e-47 |
| Msa1409410 | Msa1440430 | 0.807069 | 6.052318e-50 | -8.615850e-47 |
| Msa1410160 | Msa1440430 | 0.827404 | 1.593692e-54 | -8.615850e-47 |
| Msa1415540 | Msa1440430 | 0.815210 | 1.038677e-51 | -8.615850e-47 |
| Msa1417370 | Msa1440430 | 0.816471 | 5.437585e-52 | -8.615850e-47 |
| Msa1433360 | Msa1440430 | 0.829131 | 6.112135e-55 | -8.615850e-47 |
| Msa1433570 | Msa1440430 | 0.811233 | 7.757072e-51 | -8.615850e-47 |
| Msa1437780 | Msa1440430 | 0.826000 | 3.447995e-54 | -8.615850e-47 |
| Msa1438510 | Msa1440430 | 0.806857 | 6.710924e-50 | -8.615850e-47 |
| Msa1440430 | Msa1445530 | 0.804351 | 2.252479e-49 | -8.615850e-47 |
| Msa1440430 | Msa1447100 | 0.810389 | 1.180937e-50 | -8.615850e-47 |
| Msa1440430 | Msa1449900 | 0.806533 | 7.853964e-50 | -8.615850e-47 |
| Msa1440430 | Msa1450190 | 0.809576 | 1.767206e-50 | -8.615850e-47 |
| Msa1440430 | Msa1455640 | 0.813691 | 2.251736e-51 | -8.615850e-47 |
| Msa0607800 | Msa1440430 | 0.818253 | 2.159200e-52 | -8.615850e-47 |
| Msa0610700 | Msa1440430 | -0.806279 | 8.886015e-50 | -8.615850e-47 |
| Msa0619710 | Msa1440430 | 0.810285 | 1.243751e-50 | -8.615850e-47 |
| Msa0646010 | Msa1440430 | 0.820736 | 5.858251e-53 | -8.615850e-47 |
| Msa0646430 | Msa1440430 | 0.822228 | 2.650314e-53 | -8.615850e-47 |
| Msa0648040 | Msa1440430 | 0.820389 | 7.037709e-53 | -8.615850e-47 |
| Msa0657710 | Msa1440430 | 0.826569 | 2.524887e-54 | -8.615850e-47 |
| Msa0657720 | Msa1440430 | 0.807578 | 4.720301e-50 | -8.615850e-47 |
| Msa0660090 | Msa1440430 | 0.803798 | 2.934747e-49 | -8.615850e-47 |
| Msa0686040 | Msa1440430 | 0.812870 | 3.409801e-51 | -8.615850e-47 |
| Msa0687090 | Msa1440430 | 0.827811 | 1.272729e-54 | -8.615850e-47 |
| Msa0690740 | Msa1440430 | 0.814965 | 1.177287e-51 | -8.615850e-47 |
| Msa0695560 | Msa1440430 | 0.812029 | 5.206362e-51 | -8.615850e-47 |
| Msa0702790 | Msa1440430 | 0.801995 | 6.920797e-49 | -8.615850e-47 |
| Msa0702800 | Msa1440430 | 0.825394 | 4.802197e-54 | -8.615850e-47 |
| Msa0706150 | Msa1440430 | 0.825909 | 3.624315e-54 | -8.615850e-47 |
| Msa0722890 | Msa1440430 | 0.829666 | 4.530358e-55 | -8.615850e-47 |
| Msa0723090 | Msa1440430 | 0.827448 | 1.555705e-54 | -8.615850e-47 |
| Msa0735010 | Msa1440430 | 0.801210 | 1.002481e-48 | -8.615850e-47 |
| Msa0738700 | Msa1440430 | 0.832485 | 9.202661e-56 | -8.615850e-47 |
| Msa0745140 | Msa1440430 | 0.806218 | 9.154112e-50 | -8.615850e-47 |
| Msa0776640 | Msa1440430 | 0.803828 | 2.893824e-49 | -8.615850e-47 |
| Msa0780910 | Msa1440430 | 0.812149 | 4.901934e-51 | -8.615850e-47 |
| Msa0821160 | Msa1440430 | 0.807589 | 4.694730e-50 | -8.615850e-47 |
| Msa0825920 | Msa1440430 | 0.805996 | 1.019316e-49 | -8.615850e-47 |
| Msa0828960 | Msa1440430 | 0.825088 | 5.671132e-54 | -8.615850e-47 |
| Msa0120790 | Msa1440430 | 0.801073 | 1.069388e-48 | -8.615850e-47 |
| Msa0132700 | Msa1440430 | 0.864135 | 1.511432e-64 | -8.615850e-47 |
| Msa0139500 | Msa1440430 | 0.813840 | 2.087410e-51 | -8.615850e-47 |
| Msa0161930 | Msa1440430 | 0.830633 | 2.631624e-55 | -8.615850e-47 |
| Msa0181880 | Msa1440430 | 0.840711 | 7.375957e-58 | -8.615850e-47 |
| Msa0183710 | Msa1440430 | 0.811206 | 7.860194e-51 | -8.615850e-47 |
| Msa0189720 | Msa1440430 | 0.824486 | 7.863687e-54 | -8.615850e-47 |
| Msa0205210 | Msa1440430 | 0.802702 | 4.949029e-49 | -8.615850e-47 |
| Msa0206370 | Msa1440430 | 0.844163 | 8.963527e-59 | -8.615850e-47 |
| Msa0232100 | Msa1440430 | 0.832494 | 9.155770e-56 | -8.615850e-47 |
| Msa1250660 | Msa1440430 | 0.800394 | 1.471228e-48 | -8.615850e-47 |
| Msa1253520 | Msa1440430 | 0.813226 | 2.849183e-51 | -8.615850e-47 |
| Msa1254540 | Msa1440430 | 0.816314 | 5.896032e-52 | -8.615850e-47 |
| Msa1255710 | Msa1440430 | 0.808459 | 3.065780e-50 | -8.615850e-47 |
| Msa1257200 | Msa1440430 | 0.809605 | 1.742583e-50 | -8.615850e-47 |
| Msa1261160 | Msa1440430 | 0.830176 | 3.403309e-55 | -8.615850e-47 |
| Msa1263740 | Msa1440430 | 0.811780 | 5.900068e-51 | -8.615850e-47 |
| Msa1263780 | Msa1440430 | 0.827715 | 1.342013e-54 | -8.615850e-47 |
| Msa1283930 | Msa1440430 | 0.803385 | 3.575796e-49 | -8.615850e-47 |
| Msa1290380 | Msa1440430 | 0.810275 | 1.249759e-50 | -8.615850e-47 |
| Msa1290440 | Msa1440430 | 0.806763 | 7.025015e-50 | -8.615850e-47 |
| Msa1294460 | Msa1440430 | 0.803769 | 2.976479e-49 | -8.615850e-47 |
| Msa1294790 | Msa1440430 | 0.806808 | 6.873442e-50 | -8.615850e-47 |
| Msa1296860 | Msa1440430 | 0.825170 | 5.423393e-54 | -8.615850e-47 |
| Msa1300420 | Msa1440430 | 0.827873 | 1.230287e-54 | -8.615850e-47 |
| Msa1306820 | Msa1440430 | 0.815337 | 9.733028e-52 | -8.615850e-47 |
| Msa1308850 | Msa1440430 | 0.813532 | 2.440158e-51 | -8.615850e-47 |
| Msa1322960 | Msa1440430 | 0.803389 | 3.568226e-49 | -8.615850e-47 |
| Msa1327800 | Msa1440430 | 0.819390 | 1.190734e-52 | -8.615850e-47 |
| Msa1338540 | Msa1440430 | 0.822984 | 1.767466e-53 | -8.615850e-47 |
| Msa0383000 | Msa1440430 | 0.806876 | 6.647944e-50 | -8.615850e-47 |
| Msa0386540 | Msa1440430 | 0.942766 | 4.009897e-102 | -8.615850e-47 |
| Msa0386560 | Msa1440430 | 0.838684 | 2.483751e-57 | -8.615850e-47 |
| Msa0387930 | Msa1440430 | 0.812385 | 4.353638e-51 | -8.615850e-47 |
| Msa0401060 | Msa1440430 | 0.803630 | 3.181149e-49 | -8.615850e-47 |
| Msa0401970 | Msa1440430 | 0.856669 | 2.751008e-62 | -8.615850e-47 |
| Msa0437480 | Msa1440430 | 0.872841 | 2.333043e-67 | -8.615850e-47 |
| Msa0437520 | Msa1440430 | 0.811819 | 5.785484e-51 | -8.615850e-47 |
| Msa0440350 | Msa1440430 | 0.860318 | 2.244959e-63 | -8.615850e-47 |
| Msa0455970 | Msa1440430 | 0.801741 | 7.802617e-49 | -8.615850e-47 |
| Msa0457570 | Msa1440430 | 0.830018 | 3.718997e-55 | -8.615850e-47 |
| Msa0466520 | Msa1440430 | 0.822302 | 2.547430e-53 | -8.615850e-47 |
| Msa0471000 | Msa1440430 | 0.812722 | 3.674405e-51 | -8.615850e-47 |
| Msa0481670 | Msa1440430 | 0.839803 | 1.273237e-57 | -8.615850e-47 |
| Msa1029820 | Msa1440430 | 0.826661 | 2.400443e-54 | -8.615850e-47 |
| Msa1031410 | Msa1440430 | 0.830124 | 3.504444e-55 | -8.615850e-47 |
| Msa1041060 | Msa1440430 | 0.806299 | 8.801519e-50 | -8.615850e-47 |
| Msa1042190 | Msa1440430 | 0.801010 | 1.101414e-48 | -8.615850e-47 |
| Msa1042300 | Msa1440430 | 0.812001 | 5.280801e-51 | -8.615850e-47 |
| Msa1044250 | Msa1440430 | 0.813580 | 2.382550e-51 | -8.615850e-47 |
| Msa1068730 | Msa1440430 | 0.808564 | 2.911197e-50 | -8.615850e-47 |
| Msa1068940 | Msa1440430 | 0.832561 | 8.813290e-56 | -8.615850e-47 |
| Msa1068960 | Msa1440430 | 0.824297 | 8.711566e-54 | -8.615850e-47 |
| Msa1081690 | Msa1440430 | 0.800670 | 1.292266e-48 | -8.615850e-47 |
| Msa1088320 | Msa1440430 | 0.813979 | 1.945526e-51 | -8.615850e-47 |
| Msa0256980 | Msa1440430 | 0.810086 | 1.372567e-50 | -8.615850e-47 |
| Msa0262750 | Msa1440430 | 0.811300 | 7.502145e-51 | -8.615850e-47 |
| Msa0284800 | Msa1440430 | 0.819946 | 8.889363e-53 | -8.615850e-47 |
| Msa0296300 | Msa1440430 | 0.806666 | 7.364202e-50 | -8.615850e-47 |
| Msa0310130 | Msa1440430 | 0.803821 | 2.903238e-49 | -8.615850e-47 |
| Msa0324830 | Msa1440430 | 0.804736 | 1.872251e-49 | -8.615850e-47 |
| Msa0330520 | Msa1440430 | 0.808619 | 2.834003e-50 | -8.615850e-47 |
| Msa0336460 | Msa1440430 | 0.828094 | 1.088263e-54 | -8.615850e-47 |
| Msa0354840 | Msa1440430 | 0.874255 | 7.791258e-68 | -8.615850e-47 |
| Msa1125250 | Msa1440430 | 0.808483 | 3.029556e-50 | -8.615850e-47 |
| Msa1127970 | Msa1440430 | 0.813704 | 2.236771e-51 | -8.615850e-47 |
| Msa1149910 | Msa1440430 | 0.818441 | 1.957558e-52 | -8.615850e-47 |
| Msa1156710 | Msa1440430 | 0.826667 | 2.391686e-54 | -8.615850e-47 |
| Msa1156730 | Msa1440430 | 0.812853 | 3.440092e-51 | -8.615850e-47 |
| Msa1166190 | Msa1440430 | 0.820054 | 8.401211e-53 | -8.615850e-47 |
| Msa1166290 | Msa1440430 | 0.818857 | 1.575057e-52 | -8.615850e-47 |
| Msa1167470 | Msa1440430 | 0.807515 | 4.866849e-50 | -8.615850e-47 |
| Msa1194240 | Msa1440430 | 0.817511 | 3.174904e-52 | -8.615850e-47 |
| Msa1194290 | Msa1440430 | 0.801594 | 8.366488e-49 | -8.615850e-47 |
| Msa1200500 | Msa1440430 | 0.817737 | 2.824204e-52 | -8.615850e-47 |
| Msa1206920 | Msa1440430 | 0.803680 | 3.105733e-49 | -8.615850e-47 |
| Msa0486460 | Msa1440430 | 0.824962 | 6.074595e-54 | -8.615850e-47 |
| Msa0504720 | Msa1440430 | 0.805422 | 1.345289e-49 | -8.615850e-47 |
| Msa0513080 | Msa1440430 | 0.808682 | 2.747597e-50 | -8.615850e-47 |
| Msa0523550 | Msa1440430 | 0.836984 | 6.793264e-57 | -8.615850e-47 |
| Msa0523570 | Msa1440430 | 0.932106 | 1.399219e-94 | -8.615850e-47 |
| Msa0528570 | Msa1440430 | 0.811177 | 7.974378e-51 | -8.615850e-47 |
| Msa0549960 | Msa1440430 | 0.813759 | 2.174881e-51 | -8.615850e-47 |
| Msa0553750 | Msa1440430 | 0.813633 | 2.319336e-51 | -8.615850e-47 |
| Msa0566280 | Msa1440430 | 0.802246 | 6.145691e-49 | -8.615850e-47 |
| Msa0567330 | Msa1440430 | 0.815840 | 7.520588e-52 | -8.615850e-47 |
| Msa0567570 | Msa1440430 | 0.818331 | 2.072401e-52 | -8.615850e-47 |
| Msa0570010 | Msa1440430 | 0.809452 | 1.879578e-50 | -8.615850e-47 |
| Msa0576320 | Msa1440430 | 0.805998 | 1.018242e-49 | -8.615850e-47 |
| Msa0577480 | Msa1440430 | 0.809175 | 2.154435e-50 | -8.615850e-47 |
| Msa0579070 | Msa1440430 | -0.801465 | 8.890730e-49 | -8.615850e-47 |
| Msa0859290 | Msa1440430 | 0.825863 | 3.716605e-54 | -8.615850e-47 |
| Msa0865420 | Msa1440430 | 0.806390 | 8.419633e-50 | -8.615850e-47 |
| Msa0880910 | Msa1440430 | 0.806601 | 7.600668e-50 | -8.615850e-47 |
| Msa0881310 | Msa1440430 | 0.817228 | 3.675965e-52 | -8.615850e-47 |
| Msa0967780 | Msa1440430 | 0.820482 | 6.702169e-53 | -8.615850e-47 |
| Msa0968180 | Msa1440430 | 0.837538 | 4.900186e-57 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1440430 | MtrunA17_Chr3g0144451 | 97.193 | 285 | 8 | 0 | 1 | 285 | 1 | 285 | 0.0 | 578 |
| Msa1440430 | MtrunA17_Chr3g0138231 | 83.916 | 286 | 35 | 2 | 1 | 285 | 1 | 276 | 1.53e-171 | 475 |
| Msa1440430 | MtrunA17_Chr4g0034821 | 67.568 | 296 | 85 | 2 | 1 | 285 | 6 | 301 | 4.84e-143 | 404 |
| Msa1440430 | MtrunA17_Chr3g0144421 | 46.128 | 297 | 131 | 4 | 7 | 275 | 7 | 302 | 1.81e-92 | 276 |
| Msa1440430 | MtrunA17_Chr3g0144391 | 47.032 | 219 | 113 | 1 | 57 | 275 | 290 | 505 | 1.65e-70 | 226 |
| Msa1440430 | MtrunA17_Chr3g0144411 | 46.575 | 219 | 114 | 1 | 57 | 275 | 323 | 538 | 9.09e-69 | 222 |
| Msa1440430 | MtrunA17_Chr4g0034731 | 46.119 | 219 | 113 | 4 | 59 | 275 | 217 | 432 | 2.57e-65 | 210 |
| Msa1440430 | MtrunA17_Chr4g0034451 | 41.463 | 246 | 138 | 4 | 39 | 281 | 290 | 532 | 3.17e-64 | 210 |
| Msa1440430 | MtrunA17_Chr4g0034721 | 46.903 | 226 | 115 | 4 | 59 | 282 | 361 | 583 | 2.76e-62 | 206 |
| Msa1440430 | MtrunA17_Chr4g0034691 | 40.074 | 272 | 148 | 5 | 16 | 282 | 454 | 715 | 2.13e-59 | 201 |
| Msa1440430 | MtrunA17_Chr1g0147271 | 43.750 | 224 | 121 | 4 | 54 | 276 | 166 | 385 | 3.27e-59 | 193 |
| Msa1440430 | MtrunA17_Chr6g0485051 | 45.455 | 209 | 108 | 4 | 71 | 276 | 1 | 206 | 2.86e-58 | 185 |
| Msa1440430 | MtrunA17_Chr3g0139431 | 42.291 | 227 | 123 | 5 | 53 | 276 | 101 | 322 | 9.46e-56 | 182 |
| Msa1440430 | MtrunA17_Chr1g0147301 | 41.964 | 224 | 124 | 5 | 55 | 276 | 66 | 285 | 3.53e-54 | 177 |
| Msa1440430 | MtrunA17_Chr1g0147331 | 40.625 | 224 | 126 | 5 | 54 | 276 | 108 | 325 | 1.43e-53 | 177 |
| Msa1440430 | MtrunA17_Chr1g0147291 | 41.704 | 223 | 122 | 5 | 55 | 276 | 52 | 267 | 3.38e-53 | 174 |
| Msa1440430 | MtrunA17_Chr1g0146631 | 40.179 | 224 | 127 | 5 | 54 | 276 | 108 | 325 | 1.27e-52 | 174 |
| Msa1440430 | MtrunA17_Chr1g0147321 | 41.364 | 220 | 121 | 5 | 55 | 273 | 23 | 235 | 3.49e-52 | 171 |
| Msa1440430 | MtrunA17_Chr1g0147311 | 41.071 | 224 | 126 | 5 | 55 | 276 | 137 | 356 | 2.28e-51 | 172 |
| Msa1440430 | MtrunA17_Chr1g0147261 | 40.090 | 222 | 127 | 4 | 55 | 276 | 85 | 300 | 4.43e-51 | 169 |
| Msa1440430 | MtrunA17_Chr1g0147251 | 39.640 | 222 | 125 | 4 | 55 | 276 | 31 | 243 | 1.11e-49 | 164 |
| Msa1440430 | MtrunA17_Chr1g0147241 | 38.839 | 224 | 131 | 3 | 53 | 276 | 96 | 313 | 7.62e-49 | 164 |
| Msa1440430 | MtrunA17_Chr8g0365361 | 31.674 | 221 | 138 | 6 | 59 | 274 | 181 | 393 | 8.57e-30 | 116 |
| Msa1440430 | MtrunA17_Chr5g0413591 | 32.432 | 222 | 135 | 7 | 59 | 274 | 415 | 627 | 7.40e-29 | 115 |
| Msa1440430 | MtrunA17_Chr8g0365401 | 31.982 | 222 | 136 | 7 | 59 | 274 | 412 | 624 | 2.31e-27 | 111 |
| Msa1440430 | MtrunA17_Chr3g0117791 | 31.963 | 219 | 140 | 6 | 59 | 274 | 413 | 625 | 1.46e-25 | 105 |
| Msa1440430 | MtrunA17_Chr4g0034051 | 54.430 | 79 | 34 | 2 | 199 | 275 | 1 | 79 | 3.20e-25 | 96.3 |
| Msa1440430 | MtrunA17_Chr8g0365381 | 30.455 | 220 | 140 | 5 | 59 | 273 | 429 | 640 | 7.75e-25 | 103 |
| Msa1440430 | MtrunA17_Chr4g0076231 | 32.903 | 155 | 99 | 4 | 121 | 273 | 5 | 156 | 1.16e-24 | 97.1 |
| Msa1440430 | MtrunA17_Chr8g0355871 | 38.514 | 148 | 81 | 5 | 128 | 275 | 85 | 222 | 2.54e-20 | 87.4 |
| Msa1440430 | MtrunA17_Chr5g0412981 | 27.189 | 217 | 153 | 3 | 58 | 273 | 196 | 408 | 2.54e-19 | 87.0 |
| Msa1440430 | MtrunA17_Chr5g0412981 | 27.160 | 162 | 113 | 3 | 97 | 257 | 27 | 184 | 6.25e-14 | 71.2 |
| Msa1440430 | MtrunA17_Chr5g0412991 | 27.189 | 217 | 153 | 3 | 58 | 273 | 196 | 408 | 2.83e-19 | 87.0 |
| Msa1440430 | MtrunA17_Chr5g0412991 | 27.160 | 162 | 113 | 3 | 97 | 257 | 27 | 184 | 1.88e-13 | 70.1 |
| Msa1440430 | MtrunA17_Chr8g0355311 | 35.135 | 148 | 86 | 5 | 128 | 275 | 53 | 190 | 2.99e-19 | 83.6 |
| Msa1440430 | MtrunA17_Chr8g0355321 | 37.500 | 144 | 74 | 5 | 135 | 275 | 172 | 302 | 8.10e-18 | 81.6 |
| Msa1440430 | MtrunA17_Chr8g0355861 | 34.459 | 148 | 87 | 4 | 128 | 275 | 123 | 260 | 1.12e-17 | 80.9 |
| Msa1440430 | MtrunA17_Chr5g0412951 | 26.190 | 210 | 150 | 3 | 65 | 273 | 2 | 207 | 2.62e-17 | 78.6 |
| Msa1440430 | MtrunA17_Chr2g0318871 | 34.228 | 149 | 88 | 5 | 129 | 277 | 123 | 261 | 1.76e-16 | 77.4 |
| Msa1440430 | MtrunA17_Chr2g0318901 | 34.722 | 144 | 84 | 5 | 134 | 277 | 128 | 261 | 2.77e-16 | 77.0 |
| Msa1440430 | MtrunA17_Chr8g0355841 | 34.043 | 141 | 83 | 4 | 135 | 275 | 379 | 509 | 1.45e-15 | 76.6 |
| Msa1440430 | MtrunA17_Chr8g0355331 | 34.722 | 144 | 78 | 5 | 135 | 275 | 291 | 421 | 2.53e-15 | 75.5 |
| Msa1440430 | MtrunA17_Chr8g0371951 | 44.737 | 76 | 37 | 4 | 192 | 264 | 14 | 87 | 1.80e-14 | 67.4 |
| Msa1440430 | MtrunA17_Chr8g0355831 | 32.432 | 148 | 90 | 4 | 128 | 275 | 214 | 351 | 3.24e-14 | 72.0 |
| Msa1440430 | MtrunA17_Chr1g0168781 | 32.215 | 149 | 92 | 5 | 128 | 276 | 121 | 260 | 3.86e-14 | 70.9 |
| Msa1440430 | MtrunA17_Chr2g0318931 | 33.103 | 145 | 85 | 6 | 135 | 277 | 138 | 272 | 2.77e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1440430 | AT1G49320.1 | 38.790 | 281 | 160 | 5 | 1 | 276 | 7 | 280 | 7.38e-67 | 210 |
| Msa1440430 | AT5G25610.1 | 42.152 | 223 | 124 | 5 | 53 | 273 | 170 | 389 | 5.57e-52 | 175 |
| Msa1440430 | AT1G60390.1 | 31.081 | 222 | 136 | 6 | 59 | 273 | 409 | 620 | 4.36e-26 | 107 |
| Msa1440430 | AT1G70370.2 | 30.045 | 223 | 139 | 5 | 59 | 274 | 411 | 623 | 7.83e-24 | 101 |
| Msa1440430 | AT1G70370.1 | 30.045 | 223 | 139 | 5 | 59 | 274 | 411 | 623 | 7.83e-24 | 101 |
| Msa1440430 | AT1G23760.1 | 28.767 | 219 | 147 | 6 | 59 | 274 | 407 | 619 | 1.47e-22 | 97.8 |
Find 70 sgRNAs with CRISPR-Local
Find 166 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAACCTTGTGATTTCAATTT+AGG | 0.099086 | tig0029082:+45886 | Msa1440430:intergenic |
| CATGTTTCATTTCAAGTTCT+TGG | 0.201295 | tig0029082:-45970 | Msa1440430:CDS |
| ATTCTTCACTTTGAAAGATT+TGG | 0.265422 | tig0029082:-46535 | Msa1440430:CDS |
| AACCTTGTGATTTCAATTTA+GGG | 0.289344 | tig0029082:+45887 | Msa1440430:intergenic |
| TTGAAAAGTAACACTTGATT+TGG | 0.297099 | tig0029082:+46200 | Msa1440430:intergenic |
| GAATTTACACAAAACATTCT+TGG | 0.298406 | tig0029082:-46264 | Msa1440430:CDS |
| AAGTGATTCAGCTTCTTCTT+TGG | 0.321679 | tig0029082:+46446 | Msa1440430:intergenic |
| TCAAATGGGTGGTTAGATAT+AGG | 0.325253 | tig0029082:+45694 | Msa1440430:intergenic |
| AGTGATTCAGCTTCTTCTTT+GGG | 0.342654 | tig0029082:+46447 | Msa1440430:intergenic |
| CTTCTTTGGGCCATAACTTA+GGG | 0.345605 | tig0029082:+46460 | Msa1440430:intergenic |
| GAACTTAACCTCTCCTTTGA+TGG | 0.356006 | tig0029082:+46314 | Msa1440430:intergenic |
| GTGTGACAAGCCACCATCTT+TGG | 0.368463 | tig0029082:+46138 | Msa1440430:intergenic |
| GCATTTCATTATGTTCTCTT+GGG | 0.369117 | tig0029082:+46898 | Msa1440430:intergenic |
| TCCCAGCGGACAATTACATT+TGG | 0.373004 | tig0029082:-45912 | Msa1440430:CDS |
| TCTTCTTTGGGCCATAACTT+AGG | 0.375370 | tig0029082:+46459 | Msa1440430:intergenic |
| AGCATTTCATTATGTTCTCT+TGG | 0.376189 | tig0029082:+46897 | Msa1440430:intergenic |
| GAACATAATGAAATGCTAAC+TGG | 0.379487 | tig0029082:-46891 | Msa1440430:five_prime_UTR |
| GAAGTTGATGGGTCTCTCTT+AGG | 0.380142 | tig0029082:+46483 | Msa1440430:intergenic |
| CAAATGGGTGGTTAGATATA+GGG | 0.382078 | tig0029082:+45695 | Msa1440430:intergenic |
| TTTGTGTTCATGTGCTTCAA+TGG | 0.387687 | tig0029082:-45812 | Msa1440430:three_prime_UTR |
| CCCAGCGGACAATTACATTT+GGG | 0.389028 | tig0029082:-45911 | Msa1440430:CDS |
| GGCTATGGTGGTTTGTCACT+TGG | 0.403171 | tig0029082:-46016 | Msa1440430:CDS |
| TCATCTACTAGTAATCCTTC+TGG | 0.409210 | tig0029082:-46755 | Msa1440430:intron |
| TTTCAACCAATTCCCTAGCT+TGG | 0.420546 | tig0029082:+46637 | Msa1440430:intergenic |
| CATAACTTAGGGGAAGTTGA+TGG | 0.430077 | tig0029082:+46471 | Msa1440430:intergenic |
| ACTTTGAAAGATTTGGAAGT+AGG | 0.431659 | tig0029082:-46528 | Msa1440430:CDS |
| ATAGTCAAGAAAGTGAGAAT+AGG | 0.435139 | tig0029082:-46083 | Msa1440430:CDS |
| TAAGGTGCTTTCCATTGCTA+TGG | 0.435162 | tig0029082:+46356 | Msa1440430:intergenic |
| TGGAGATAAGGTTGAGGCTA+TGG | 0.442985 | tig0029082:-46031 | Msa1440430:CDS |
| GAGAGTTGGTTTGATGAGAA+AGG | 0.452149 | tig0029082:+46423 | Msa1440430:intergenic |
| GACTCATATGATTATGATGA+TGG | 0.452194 | tig0029082:+46583 | Msa1440430:intergenic |
| TGGAGACCAAGCTAGGGAAT+TGG | 0.452353 | tig0029082:-46643 | Msa1440430:CDS |
| CTTTCCATTGCTATGGCTTG+TGG | 0.462619 | tig0029082:+46363 | Msa1440430:intergenic |
| TGACACACAGAAGAGCTTCC+TGG | 0.469514 | tig0029082:+45940 | Msa1440430:intergenic |
| CATCAACTTCCCCTAAGTTA+TGG | 0.470154 | tig0029082:-46470 | Msa1440430:CDS |
| TGTGCAAAGTTGCATAAGCT+TGG | 0.472166 | tig0029082:+46226 | Msa1440430:intergenic |
| CAAGTTCTTGGTGTCACACC+AGG | 0.473983 | tig0029082:-45958 | Msa1440430:CDS |
| TAATATTGATCCTTCACTAA+TGG | 0.474162 | tig0029082:-46559 | Msa1440430:CDS |
| CCCAAATGTAATTGTCCGCT+GGG | 0.478272 | tig0029082:+45911 | Msa1440430:intergenic |
| TAGTCAAGAAAGTGAGAATA+GGG | 0.482578 | tig0029082:-46082 | Msa1440430:CDS |
| TTTCTCATGGAGACCAAGCT+AGG | 0.482788 | tig0029082:-46650 | Msa1440430:CDS |
| TCACTTGGATACATCACAAT+GGG | 0.486976 | tig0029082:-46001 | Msa1440430:CDS |
| GGAAGAGAACAAGATTGAAA+AGG | 0.490541 | tig0029082:+46935 | Msa1440430:intergenic |
| AACTCTTCACAGTTATCGCT+TGG | 0.503554 | tig0029082:+46832 | Msa1440430:intergenic |
| ACCCAAATGTAATTGTCCGC+TGG | 0.506688 | tig0029082:+45910 | Msa1440430:intergenic |
| CAACTTTGAAAGTAGAAACA+TGG | 0.510079 | tig0029082:-46809 | Msa1440430:exon |
| AACTTAACCTCTCCTTTGAT+GGG | 0.514268 | tig0029082:+46315 | Msa1440430:intergenic |
| CACTATAGTAGAAATTATGA+TGG | 0.530352 | tig0029082:-46172 | Msa1440430:CDS |
| AGATAAGGTTGAGGCTATGG+TGG | 0.538336 | tig0029082:-46028 | Msa1440430:CDS |
| AAATTCTTCTCTTTCTCTCG+AGG | 0.539084 | tig0029082:-46390 | Msa1440430:CDS |
| TTCAAGCATAGATTCTAAAG+AGG | 0.545516 | tig0029082:+46284 | Msa1440430:intergenic |
| ATAACTTAGGGGAAGTTGAT+GGG | 0.567226 | tig0029082:+46472 | Msa1440430:intergenic |
| TTACTAGTAGATGAAGAAAG+AGG | 0.580251 | tig0029082:+46764 | Msa1440430:intergenic |
| GTGAAGAATACCATTAGTGA+AGG | 0.584434 | tig0029082:+46549 | Msa1440430:intergenic |
| TGTGAAAGCAAACCCATCAA+AGG | 0.587824 | tig0029082:-46327 | Msa1440430:CDS |
| CAATCTTGTTCTCTTCCTCG+AGG | 0.589849 | tig0029082:-46929 | Msa1440430:five_prime_UTR |
| TTCTCATGGAGACCAAGCTA+GGG | 0.591351 | tig0029082:-46649 | Msa1440430:CDS |
| AACTTTGAAAGTAGAAACAT+GGG | 0.596266 | tig0029082:-46808 | Msa1440430:exon |
| GGAAATTCTAGCTCCAAAGA+TGG | 0.597283 | tig0029082:-46151 | Msa1440430:CDS |
| GTCCCTAAATTGAAATCACA+AGG | 0.602399 | tig0029082:-45889 | Msa1440430:CDS |
| TTCTTTGGGCCATAACTTAG+GGG | 0.604761 | tig0029082:+46461 | Msa1440430:intergenic |
| TGAGAATGGAGATAAGGTTG+AGG | 0.616111 | tig0029082:-46037 | Msa1440430:CDS |
| TTCACCACAAGCCATAGCAA+TGG | 0.617486 | tig0029082:-46367 | Msa1440430:CDS |
| TTGGTTAGATGACTAGAATG+AGG | 0.630874 | tig0029082:+46851 | Msa1440430:intergenic |
| GTCACTTGGATACATCACAA+TGG | 0.635200 | tig0029082:-46002 | Msa1440430:CDS |
| ACTTGAAATGAAACATGACT+AGG | 0.655390 | tig0029082:+45976 | Msa1440430:intergenic |
| AATTCTAGCTCCAAAGATGG+TGG | 0.662511 | tig0029082:-46148 | Msa1440430:CDS |
| AAGCAAACCCATCAAAGGAG+AGG | 0.675310 | tig0029082:-46322 | Msa1440430:CDS |
| GTGGTTAGATATAGGGACGG+AGG | 0.690895 | tig0029082:+45702 | Msa1440420:intergenic |
| TGGGTGGTTAGATATAGGGA+CGG | 0.715649 | tig0029082:+45699 | Msa1440420:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGGGAATAAATTTTATATCT+TGG | - | tig0029082:45920-45939 | Msa1440430:CDS | 20.0% |
| !! | TAAATATTTAACATACCAGA+AGG | + | tig0029082:45972-45991 | Msa1440430:intergenic | 20.0% |
| !!! | TGGGAATAAATTTTATATCT+TGG | - | tig0029082:45920-45939 | Msa1440430:CDS | 20.0% |
| !! | TAAATATTTAACATACCAGA+AGG | + | tig0029082:45972-45991 | Msa1440430:intergenic | 20.0% |
| !! | AACTTTGAAAGTAGAAACAT+GGG | - | tig0029082:45901-45920 | Msa1440430:CDS | 25.0% |
| !!! | GAATTTTTTCAGTTTTCTCA+TGG | - | tig0029082:46046-46065 | Msa1440430:CDS | 25.0% |
| ! | TAATATTGATCCTTCACTAA+TGG | - | tig0029082:46150-46169 | Msa1440430:CDS | 25.0% |
| !! | ATTCTTCACTTTGAAAGATT+TGG | - | tig0029082:46174-46193 | Msa1440430:CDS | 25.0% |
| !!! | ATTTTAGAAGATATGAGAGT+TGG | + | tig0029082:46303-46322 | Msa1440430:intergenic | 25.0% |
| !! | TTTGCTTTCACATTCTTTTA+AGG | + | tig0029082:46374-46393 | Msa1440430:intergenic | 25.0% |
| ! | GAATTTACACAAAACATTCT+TGG | - | tig0029082:46445-46464 | Msa1440430:CDS | 25.0% |
| ! | TTGAAAAGTAACACTTGATT+TGG | + | tig0029082:46512-46531 | Msa1440430:intergenic | 25.0% |
| ! | CACTATAGTAGAAATTATGA+TGG | - | tig0029082:46537-46556 | Msa1440430:CDS | 25.0% |
| ! | TAAAAAACAGCATAAGGATA+AGG | + | tig0029082:46601-46620 | Msa1440430:intergenic | 25.0% |
| ! | TGACAATAAAAAACAGCATA+AGG | + | tig0029082:46607-46626 | Msa1440430:intergenic | 25.0% |
| !!! | TAGGGTGTATAAAGTTTTAT+TGG | - | tig0029082:46645-46664 | Msa1440430:CDS | 25.0% |
| !!! | AGGGTGTATAAAGTTTTATT+GGG | - | tig0029082:46646-46665 | Msa1440430:CDS | 25.0% |
| ! | AACCTTGTGATTTCAATTTA+GGG | + | tig0029082:46825-46844 | Msa1440430:intergenic | 25.0% |
| !! | AACTTTGAAAGTAGAAACAT+GGG | - | tig0029082:45901-45920 | Msa1440430:CDS | 25.0% |
| !!! | GAATTTTTTCAGTTTTCTCA+TGG | - | tig0029082:46046-46065 | Msa1440430:CDS | 25.0% |
| ! | TAATATTGATCCTTCACTAA+TGG | - | tig0029082:46150-46169 | Msa1440430:CDS | 25.0% |
| !! | ATTCTTCACTTTGAAAGATT+TGG | - | tig0029082:46174-46193 | Msa1440430:CDS | 25.0% |
| !!! | ATTTTAGAAGATATGAGAGT+TGG | + | tig0029082:46303-46322 | Msa1440430:intergenic | 25.0% |
| !! | TTTGCTTTCACATTCTTTTA+AGG | + | tig0029082:46374-46393 | Msa1440430:intergenic | 25.0% |
| ! | GAATTTACACAAAACATTCT+TGG | - | tig0029082:46445-46464 | Msa1440430:CDS | 25.0% |
| ! | TTGAAAAGTAACACTTGATT+TGG | + | tig0029082:46512-46531 | Msa1440430:intergenic | 25.0% |
| ! | CACTATAGTAGAAATTATGA+TGG | - | tig0029082:46537-46556 | Msa1440430:CDS | 25.0% |
| ! | TAAAAAACAGCATAAGGATA+AGG | + | tig0029082:46601-46620 | Msa1440430:intergenic | 25.0% |
| ! | TGACAATAAAAAACAGCATA+AGG | + | tig0029082:46607-46626 | Msa1440430:intergenic | 25.0% |
| !!! | TAGGGTGTATAAAGTTTTAT+TGG | - | tig0029082:46645-46664 | Msa1440430:CDS | 25.0% |
| !!! | AGGGTGTATAAAGTTTTATT+GGG | - | tig0029082:46646-46665 | Msa1440430:CDS | 25.0% |
| ! | AACCTTGTGATTTCAATTTA+GGG | + | tig0029082:46825-46844 | Msa1440430:intergenic | 25.0% |
| GCATTTCATTATGTTCTCTT+GGG | + | tig0029082:45814-45833 | Msa1440430:intergenic | 30.0% | |
| AGCATTTCATTATGTTCTCT+TGG | + | tig0029082:45815-45834 | Msa1440430:intergenic | 30.0% | |
| GAACATAATGAAATGCTAAC+TGG | - | tig0029082:45818-45837 | Msa1440430:three_prime_UTR | 30.0% | |
| ! | CAACTTTGAAAGTAGAAACA+TGG | - | tig0029082:45900-45919 | Msa1440430:CDS | 30.0% |
| TTACTAGTAGATGAAGAAAG+AGG | + | tig0029082:45948-45967 | Msa1440430:intergenic | 30.0% | |
| GACTCATATGATTATGATGA+TGG | + | tig0029082:46129-46148 | Msa1440430:intergenic | 30.0% | |
| ! | ACTTTGAAAGATTTGGAAGT+AGG | - | tig0029082:46181-46200 | Msa1440430:CDS | 30.0% |
| ! | TTCAAGCATAGATTCTAAAG+AGG | + | tig0029082:46428-46447 | Msa1440430:intergenic | 30.0% |
| ATAGTCAAGAAAGTGAGAAT+AGG | - | tig0029082:46626-46645 | Msa1440430:CDS | 30.0% | |
| TAGTCAAGAAAGTGAGAATA+GGG | - | tig0029082:46627-46646 | Msa1440430:CDS | 30.0% | |
| !!! | GGGTGTATAAAGTTTTATTG+GGG | - | tig0029082:46647-46666 | Msa1440430:CDS | 30.0% |
| !!! | GGTGTATAAAGTTTTATTGG+GGG | - | tig0029082:46648-46667 | Msa1440430:CDS | 30.0% |
| !!! | GTGTATAAAGTTTTATTGGG+GGG | - | tig0029082:46649-46668 | Msa1440430:CDS | 30.0% |
| ACTTGAAATGAAACATGACT+AGG | + | tig0029082:46736-46755 | Msa1440430:intergenic | 30.0% | |
| !! | CATGTTTCATTTCAAGTTCT+TGG | - | tig0029082:46739-46758 | Msa1440430:intron | 30.0% |
| GAACCTTGTGATTTCAATTT+AGG | + | tig0029082:46826-46845 | Msa1440430:intergenic | 30.0% | |
| GCATTTCATTATGTTCTCTT+GGG | + | tig0029082:45814-45833 | Msa1440430:intergenic | 30.0% | |
| AGCATTTCATTATGTTCTCT+TGG | + | tig0029082:45815-45834 | Msa1440430:intergenic | 30.0% | |
| GAACATAATGAAATGCTAAC+TGG | - | tig0029082:45818-45837 | Msa1440430:three_prime_UTR | 30.0% | |
| ! | CAACTTTGAAAGTAGAAACA+TGG | - | tig0029082:45900-45919 | Msa1440430:CDS | 30.0% |
| TTACTAGTAGATGAAGAAAG+AGG | + | tig0029082:45948-45967 | Msa1440430:intergenic | 30.0% | |
| GACTCATATGATTATGATGA+TGG | + | tig0029082:46129-46148 | Msa1440430:intergenic | 30.0% | |
| ! | ACTTTGAAAGATTTGGAAGT+AGG | - | tig0029082:46181-46200 | Msa1440430:CDS | 30.0% |
| ! | TTCAAGCATAGATTCTAAAG+AGG | + | tig0029082:46428-46447 | Msa1440430:intergenic | 30.0% |
| ATAGTCAAGAAAGTGAGAAT+AGG | - | tig0029082:46626-46645 | Msa1440430:CDS | 30.0% | |
| TAGTCAAGAAAGTGAGAATA+GGG | - | tig0029082:46627-46646 | Msa1440430:CDS | 30.0% | |
| !!! | GGGTGTATAAAGTTTTATTG+GGG | - | tig0029082:46647-46666 | Msa1440430:CDS | 30.0% |
| !!! | GGTGTATAAAGTTTTATTGG+GGG | - | tig0029082:46648-46667 | Msa1440430:CDS | 30.0% |
| !!! | GTGTATAAAGTTTTATTGGG+GGG | - | tig0029082:46649-46668 | Msa1440430:CDS | 30.0% |
| ACTTGAAATGAAACATGACT+AGG | + | tig0029082:46736-46755 | Msa1440430:intergenic | 30.0% | |
| !! | CATGTTTCATTTCAAGTTCT+TGG | - | tig0029082:46739-46758 | Msa1440430:intron | 30.0% |
| GAACCTTGTGATTTCAATTT+AGG | + | tig0029082:46826-46845 | Msa1440430:intergenic | 30.0% | |
| GGAAGAGAACAAGATTGAAA+AGG | + | tig0029082:45777-45796 | Msa1079800:intergenic | 35.0% | |
| TTGGTTAGATGACTAGAATG+AGG | + | tig0029082:45861-45880 | Msa1440430:intergenic | 35.0% | |
| TCATCTACTAGTAATCCTTC+TGG | - | tig0029082:45954-45973 | Msa1440430:CDS | 35.0% | |
| GTGAAGAATACCATTAGTGA+AGG | + | tig0029082:46163-46182 | Msa1440430:intergenic | 35.0% | |
| ! | ATAACTTAGGGGAAGTTGAT+GGG | + | tig0029082:46240-46259 | Msa1440430:intergenic | 35.0% |
| AGTGATTCAGCTTCTTCTTT+GGG | + | tig0029082:46265-46284 | Msa1440430:intergenic | 35.0% | |
| AAGTGATTCAGCTTCTTCTT+TGG | + | tig0029082:46266-46285 | Msa1440430:intergenic | 35.0% | |
| AAATTCTTCTCTTTCTCTCG+AGG | - | tig0029082:46319-46338 | Msa1440430:CDS | 35.0% | |
| AACTTAACCTCTCCTTTGAT+GGG | + | tig0029082:46397-46416 | Msa1440430:intergenic | 35.0% | |
| TCACTTGGATACATCACAAT+GGG | - | tig0029082:46708-46727 | Msa1440430:intron | 35.0% | |
| GTCCCTAAATTGAAATCACA+AGG | - | tig0029082:46820-46839 | Msa1440430:five_prime_UTR | 35.0% | |
| TTTGTGTTCATGTGCTTCAA+TGG | - | tig0029082:46897-46916 | Msa1440430:five_prime_UTR | 35.0% | |
| GGAAGAGAACAAGATTGAAA+AGG | + | tig0029082:45777-45796 | Msa1440430:intergenic | 35.0% | |
| TTGGTTAGATGACTAGAATG+AGG | + | tig0029082:45861-45880 | Msa1440430:intergenic | 35.0% | |
| TCATCTACTAGTAATCCTTC+TGG | - | tig0029082:45954-45973 | Msa1440430:CDS | 35.0% | |
| GTGAAGAATACCATTAGTGA+AGG | + | tig0029082:46163-46182 | Msa1440430:intergenic | 35.0% | |
| ! | ATAACTTAGGGGAAGTTGAT+GGG | + | tig0029082:46240-46259 | Msa1440430:intergenic | 35.0% |
| AGTGATTCAGCTTCTTCTTT+GGG | + | tig0029082:46265-46284 | Msa1440430:intergenic | 35.0% | |
| AAGTGATTCAGCTTCTTCTT+TGG | + | tig0029082:46266-46285 | Msa1440430:intergenic | 35.0% | |
| AAATTCTTCTCTTTCTCTCG+AGG | - | tig0029082:46319-46338 | Msa1440430:CDS | 35.0% | |
| AACTTAACCTCTCCTTTGAT+GGG | + | tig0029082:46397-46416 | Msa1440430:intergenic | 35.0% | |
| TCACTTGGATACATCACAAT+GGG | - | tig0029082:46708-46727 | Msa1440430:intron | 35.0% | |
| GTCCCTAAATTGAAATCACA+AGG | - | tig0029082:46820-46839 | Msa1440430:five_prime_UTR | 35.0% | |
| TTTGTGTTCATGTGCTTCAA+TGG | - | tig0029082:46897-46916 | Msa1440430:five_prime_UTR | 35.0% | |
| AACTCTTCACAGTTATCGCT+TGG | + | tig0029082:45880-45899 | Msa1440430:intergenic | 40.0% | |
| TTTCAACCAATTCCCTAGCT+TGG | + | tig0029082:46075-46094 | Msa1440430:intergenic | 40.0% | |
| CATAACTTAGGGGAAGTTGA+TGG | + | tig0029082:46241-46260 | Msa1440430:intergenic | 40.0% | |
| CATCAACTTCCCCTAAGTTA+TGG | - | tig0029082:46239-46258 | Msa1440430:CDS | 40.0% | |
| TTCTTTGGGCCATAACTTAG+GGG | + | tig0029082:46251-46270 | Msa1440430:intergenic | 40.0% | |
| CTTCTTTGGGCCATAACTTA+GGG | + | tig0029082:46252-46271 | Msa1440430:intergenic | 40.0% | |
| TCTTCTTTGGGCCATAACTT+AGG | + | tig0029082:46253-46272 | Msa1440430:intergenic | 40.0% | |
| !! | GAGAGTTGGTTTGATGAGAA+AGG | + | tig0029082:46289-46308 | Msa1440430:intergenic | 40.0% |
| ! | TAAGGTGCTTTCCATTGCTA+TGG | + | tig0029082:46356-46375 | Msa1440430:intergenic | 40.0% |
| TGTGAAAGCAAACCCATCAA+AGG | - | tig0029082:46382-46401 | Msa1440430:CDS | 40.0% | |
| GAACTTAACCTCTCCTTTGA+TGG | + | tig0029082:46398-46417 | Msa1440430:intergenic | 40.0% | |
| TGTGCAAAGTTGCATAAGCT+TGG | + | tig0029082:46486-46505 | Msa1440430:intergenic | 40.0% | |
| !! | GGAAATTCTAGCTCCAAAGA+TGG | - | tig0029082:46558-46577 | Msa1440430:CDS | 40.0% |
| !! | AATTCTAGCTCCAAAGATGG+TGG | - | tig0029082:46561-46580 | Msa1440430:CDS | 40.0% |
| TGAGAATGGAGATAAGGTTG+AGG | - | tig0029082:46672-46691 | Msa1440430:intron | 40.0% | |
| GTCACTTGGATACATCACAA+TGG | - | tig0029082:46707-46726 | Msa1440430:intron | 40.0% | |
| !!! | TGTGTGTCATTTTTTCCCAG+CGG | - | tig0029082:46783-46802 | Msa1440430:CDS | 40.0% |
| AACTCTTCACAGTTATCGCT+TGG | + | tig0029082:45880-45899 | Msa1440430:intergenic | 40.0% | |
| TTTCAACCAATTCCCTAGCT+TGG | + | tig0029082:46075-46094 | Msa1440430:intergenic | 40.0% | |
| CATAACTTAGGGGAAGTTGA+TGG | + | tig0029082:46241-46260 | Msa1440430:intergenic | 40.0% | |
| CATCAACTTCCCCTAAGTTA+TGG | - | tig0029082:46239-46258 | Msa1440430:CDS | 40.0% | |
| TTCTTTGGGCCATAACTTAG+GGG | + | tig0029082:46251-46270 | Msa1440430:intergenic | 40.0% | |
| CTTCTTTGGGCCATAACTTA+GGG | + | tig0029082:46252-46271 | Msa1440430:intergenic | 40.0% | |
| TCTTCTTTGGGCCATAACTT+AGG | + | tig0029082:46253-46272 | Msa1440430:intergenic | 40.0% | |
| !! | GAGAGTTGGTTTGATGAGAA+AGG | + | tig0029082:46289-46308 | Msa1440430:intergenic | 40.0% |
| ! | TAAGGTGCTTTCCATTGCTA+TGG | + | tig0029082:46356-46375 | Msa1440430:intergenic | 40.0% |
| TGTGAAAGCAAACCCATCAA+AGG | - | tig0029082:46382-46401 | Msa1440430:CDS | 40.0% | |
| GAACTTAACCTCTCCTTTGA+TGG | + | tig0029082:46398-46417 | Msa1440430:intergenic | 40.0% | |
| TGTGCAAAGTTGCATAAGCT+TGG | + | tig0029082:46486-46505 | Msa1440430:intergenic | 40.0% | |
| !! | GGAAATTCTAGCTCCAAAGA+TGG | - | tig0029082:46558-46577 | Msa1440430:CDS | 40.0% |
| !! | AATTCTAGCTCCAAAGATGG+TGG | - | tig0029082:46561-46580 | Msa1440430:CDS | 40.0% |
| TGAGAATGGAGATAAGGTTG+AGG | - | tig0029082:46672-46691 | Msa1440430:intron | 40.0% | |
| GTCACTTGGATACATCACAA+TGG | - | tig0029082:46707-46726 | Msa1440430:intron | 40.0% | |
| !!! | TGTGTGTCATTTTTTCCCAG+CGG | - | tig0029082:46783-46802 | Msa1440430:CDS | 40.0% |
| CAATCTTGTTCTCTTCCTCG+AGG | - | tig0029082:45780-45799 | Msa1440430:three_prime_UTR | 45.0% | |
| TTTCTCATGGAGACCAAGCT+AGG | - | tig0029082:46059-46078 | Msa1440430:CDS | 45.0% | |
| TTCTCATGGAGACCAAGCTA+GGG | - | tig0029082:46060-46079 | Msa1440430:CDS | 45.0% | |
| !! | GAAGTTGATGGGTCTCTCTT+AGG | + | tig0029082:46229-46248 | Msa1440430:intergenic | 45.0% |
| TTCACCACAAGCCATAGCAA+TGG | - | tig0029082:46342-46361 | Msa1440430:CDS | 45.0% | |
| CTTTCCATTGCTATGGCTTG+TGG | + | tig0029082:46349-46368 | Msa1440430:intergenic | 45.0% | |
| AAGCAAACCCATCAAAGGAG+AGG | - | tig0029082:46387-46406 | Msa1440430:CDS | 45.0% | |
| !! | GTTTTATTGGGGGGTGAGAA+TGG | - | tig0029082:46658-46677 | Msa1440430:intron | 45.0% |
| TGGAGATAAGGTTGAGGCTA+TGG | - | tig0029082:46678-46697 | Msa1440430:intron | 45.0% | |
| AGATAAGGTTGAGGCTATGG+TGG | - | tig0029082:46681-46700 | Msa1440430:intron | 45.0% | |
| TCCCAGCGGACAATTACATT+TGG | - | tig0029082:46797-46816 | Msa1440430:exon | 45.0% | |
| CCCAAATGTAATTGTCCGCT+GGG | + | tig0029082:46801-46820 | Msa1440430:intergenic | 45.0% | |
| CCCAGCGGACAATTACATTT+GGG | - | tig0029082:46798-46817 | Msa1440430:exon | 45.0% | |
| ACCCAAATGTAATTGTCCGC+TGG | + | tig0029082:46802-46821 | Msa1440430:intergenic | 45.0% | |
| CAATCTTGTTCTCTTCCTCG+AGG | - | tig0029082:45780-45799 | Msa1440430:three_prime_UTR | 45.0% | |
| TTTCTCATGGAGACCAAGCT+AGG | - | tig0029082:46059-46078 | Msa1440430:CDS | 45.0% | |
| TTCTCATGGAGACCAAGCTA+GGG | - | tig0029082:46060-46079 | Msa1440430:CDS | 45.0% | |
| !! | GAAGTTGATGGGTCTCTCTT+AGG | + | tig0029082:46229-46248 | Msa1440430:intergenic | 45.0% |
| TTCACCACAAGCCATAGCAA+TGG | - | tig0029082:46342-46361 | Msa1440430:CDS | 45.0% | |
| CTTTCCATTGCTATGGCTTG+TGG | + | tig0029082:46349-46368 | Msa1440430:intergenic | 45.0% | |
| AAGCAAACCCATCAAAGGAG+AGG | - | tig0029082:46387-46406 | Msa1440430:CDS | 45.0% | |
| !! | GTTTTATTGGGGGGTGAGAA+TGG | - | tig0029082:46658-46677 | Msa1440430:intron | 45.0% |
| TGGAGATAAGGTTGAGGCTA+TGG | - | tig0029082:46678-46697 | Msa1440430:intron | 45.0% | |
| AGATAAGGTTGAGGCTATGG+TGG | - | tig0029082:46681-46700 | Msa1440430:intron | 45.0% | |
| TCCCAGCGGACAATTACATT+TGG | - | tig0029082:46797-46816 | Msa1440430:exon | 45.0% | |
| CCCAAATGTAATTGTCCGCT+GGG | + | tig0029082:46801-46820 | Msa1440430:intergenic | 45.0% | |
| CCCAGCGGACAATTACATTT+GGG | - | tig0029082:46798-46817 | Msa1440430:exon | 45.0% | |
| ACCCAAATGTAATTGTCCGC+TGG | + | tig0029082:46802-46821 | Msa1440430:intergenic | 45.0% | |
| !!! | GATTATTATAAAATTTTATT+TGG | + | tig0029082:45733-45752 | Msa1079800:intergenic | 5.0% |
| !!! | GATTATTATAAAATTTTATT+TGG | + | tig0029082:45733-45752 | Msa1440430:intergenic | 5.0% |
| ! | TCTTGGGCACATTTTCCTCG+AGG | + | tig0029082:45798-45817 | Msa1440430:intergenic | 50.0% |
| TGGAGACCAAGCTAGGGAAT+TGG | - | tig0029082:46066-46085 | Msa1440430:CDS | 50.0% | |
| GTGTGACAAGCCACCATCTT+TGG | + | tig0029082:46574-46593 | Msa1440430:intergenic | 50.0% | |
| ! | GGCTATGGTGGTTTGTCACT+TGG | - | tig0029082:46693-46712 | Msa1440430:intron | 50.0% |
| !! | CAAGTTCTTGGTGTCACACC+AGG | - | tig0029082:46751-46770 | Msa1440430:intron | 50.0% |
| TGACACACAGAAGAGCTTCC+TGG | + | tig0029082:46772-46791 | Msa1440430:intergenic | 50.0% | |
| ! | TCTTGGGCACATTTTCCTCG+AGG | + | tig0029082:45798-45817 | Msa1440430:intergenic | 50.0% |
| TGGAGACCAAGCTAGGGAAT+TGG | - | tig0029082:46066-46085 | Msa1440430:CDS | 50.0% | |
| GTGTGACAAGCCACCATCTT+TGG | + | tig0029082:46574-46593 | Msa1440430:intergenic | 50.0% | |
| ! | GGCTATGGTGGTTTGTCACT+TGG | - | tig0029082:46693-46712 | Msa1440430:intron | 50.0% |
| !! | CAAGTTCTTGGTGTCACACC+AGG | - | tig0029082:46751-46770 | Msa1440430:intron | 50.0% |
| TGACACACAGAAGAGCTTCC+TGG | + | tig0029082:46772-46791 | Msa1440430:intergenic | 50.0% | |
| GGGGGGTGAGAATGGAGATA+AGG | - | tig0029082:46666-46685 | Msa1440430:intron | 55.0% | |
| GGGGGGTGAGAATGGAGATA+AGG | - | tig0029082:46666-46685 | Msa1440430:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0029082 | gene | 45707 | 47024 | 45707 | ID=Msa1440430;Name=Msa1440430 |
| tig0029082 | mRNA | 45707 | 47024 | 45707 | ID=Msa1440430-mRNA-1;Parent=Msa1440430;Name=Msa1440430-mRNA-1;_AED=0.02;_eAED=0.02;_QI=212|1|1|1|1|1|2|166|285 |
| tig0029082 | exon | 45707 | 46673 | 45707 | ID=Msa1440430-mRNA-1:exon:12254;Parent=Msa1440430-mRNA-1 |
| tig0029082 | exon | 46756 | 47024 | 46756 | ID=Msa1440430-mRNA-1:exon:12253;Parent=Msa1440430-mRNA-1 |
| tig0029082 | five_prime_UTR | 46813 | 47024 | 46813 | ID=Msa1440430-mRNA-1:five_prime_utr;Parent=Msa1440430-mRNA-1 |
| tig0029082 | CDS | 46756 | 46812 | 46756 | ID=Msa1440430-mRNA-1:cds;Parent=Msa1440430-mRNA-1 |
| tig0029082 | CDS | 45873 | 46673 | 45873 | ID=Msa1440430-mRNA-1:cds;Parent=Msa1440430-mRNA-1 |
| tig0029082 | three_prime_UTR | 45707 | 45872 | 45707 | ID=Msa1440430-mRNA-1:three_prime_utr;Parent=Msa1440430-mRNA-1 |
| Gene Sequence |
| Protein sequence |
