AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0771960


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0771960 MtrunA17_Chr5g0426121 99.846 651 1 0 1 651 1 651 0.0 1340
Msa0771960 MtrunA17_Chr1g0187801 55.757 608 242 7 9 606 6 596 0.0 708
Msa0771960 MtrunA17_Chr1g0167721 59.016 549 208 5 9 553 4 539 0.0 681
Msa0771960 MtrunA17_Chr4g0003821 26.367 512 343 13 2 492 8 506 1.45e-43 165
Msa0771960 MtrunA17_Chr3g0138841 41.538 130 75 1 319 448 426 554 2.81e-21 98.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0771960 AT4G08920.1 80.000 650 111 8 10 651 15 653 0.0 993
Msa0771960 AT1G04400.1 55.155 582 229 6 9 578 7 568 0.0 658
Msa0771960 AT1G04400.2 55.155 582 229 6 9 578 7 568 0.0 658
Msa0771960 AT3G15620.1 28.648 562 345 22 2 534 19 553 1.32e-44 168
Msa0771960 AT5G24850.1 28.782 476 282 19 1 446 78 526 4.88e-26 113
Msa0771960 AT3G15620.2 27.842 431 262 19 2 401 19 431 5.36e-25 108

Find 209 sgRNAs with CRISPR-Local

Find 416 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATTGTATTTCATCTCTTTA+TGG 0.077078 5_2:-45719971 Msa0771960:five_prime_UTR
GGAGATACATGTACTCATTT+TGG 0.142752 5_2:-45714382 Msa0771960:CDS
CTTACTGATATTACATTAAA+TGG 0.173041 5_2:+45714094 None:intergenic
CTCTCTCCACATCTGCATTT+CGG 0.260934 5_2:-45717342 Msa0771960:CDS
ATAATCCTACAACTACATTT+TGG 0.273514 5_2:-45715766 Msa0771960:CDS
TAATATTGTCCTTCTTCTTC+AGG 0.276429 5_2:+45719756 None:intergenic
TCAATATAGAAAACAAATAA+AGG 0.277400 5_2:-45719935 Msa0771960:five_prime_UTR
TCCGAATCAAACAAGTCTTT+TGG 0.278556 5_2:-45717287 Msa0771960:CDS
ATCTTCTTCAACCATTTATA+TGG 0.287219 5_2:-45719582 Msa0771960:intron
AGAGGCCTTTCATGACTATA+AGG 0.302746 5_2:+45717168 None:intergenic
TCTCTTGCATTTGCATTTGT+TGG 0.309488 5_2:+45715842 None:intergenic
GGGTTTGTGATGATGATTTA+AGG 0.320271 5_2:-45714162 Msa0771960:three_prime_UTR
GATTCATCTTTGAGAAATCT+TGG 0.332736 5_2:-45719684 Msa0771960:CDS
CTTTGCTTCACTCTTAAACT+TGG 0.334008 5_2:-45714183 Msa0771960:three_prime_UTR
TTTGGAAATTTCAGTACATT+GGG 0.341105 5_2:-45714318 Msa0771960:three_prime_UTR
CAAAACCTTGACAAAGAAAC+TGG 0.347403 5_2:+45716993 None:intergenic
TGGGACGTGAACGATGAAAA+TGG 0.354759 5_2:-45718791 Msa0771960:CDS
CCACCTAAAAGAATTATTCC+AGG 0.356435 5_2:-45718692 Msa0771960:intron
AGGAAAGACATGAACCTATT+AGG 0.369574 5_2:-45715997 Msa0771960:CDS
CTTGGTTGGCAGTATATATC+TGG 0.369739 5_2:-45716898 Msa0771960:CDS
TTGCTGATTTCCAATGTGTT+TGG 0.370724 5_2:-45714336 Msa0771960:three_prime_UTR
CTCAGCCAAAATGTAGTTGT+AGG 0.374414 5_2:+45715761 None:intergenic
TGAGGTGCATTGTTCCTAAT+AGG 0.377118 5_2:+45715983 None:intergenic
TGTTCTAATCTCTCTCTCCT+TGG 0.377210 5_2:-45720148 Msa0771960:five_prime_UTR
CCCAAAAGACTTGTTTGATT+CGG 0.377722 5_2:+45717286 None:intergenic
TGATAGTGTTTCTTCTTTGT+TGG 0.377799 5_2:-45719634 Msa0771960:CDS
TGAGTCTCCAAGACCTTCTT+CGG 0.384773 5_2:+45716063 None:intergenic
CAATATGTAGATGATGAAAA+TGG 0.386319 5_2:-45715632 Msa0771960:intron
GTTGGTAATCTTGCAAGTTC+AGG 0.388626 5_2:+45716268 None:intergenic
GCTGCATCTATTTCCACAAT+TGG 0.397781 5_2:+45716163 None:intergenic
AACTTCTTCGGTTCGAAACT+CGG 0.401899 5_2:-45715888 Msa0771960:CDS
GCAGCTTGGAGTACTGATTC+TGG 0.409884 5_2:+45716217 None:intergenic
AACTTGTTTCTCAAGTCAAT+TGG 0.410128 5_2:-45717228 Msa0771960:CDS
CTAACACCTGCTGCTAGTGC+AGG 0.412557 5_2:+45719813 None:intergenic
CAAAATATATACTTTACAAT+AGG 0.415780 5_2:+45714243 None:intergenic
ACCAAGGAGCGTTGCAGAAT+GGG 0.420143 5_2:-45715811 Msa0771960:CDS
TTTGCAGCTTCCTTGGAGAT+GGG 0.421455 5_2:-45716974 Msa0771960:CDS
CTTGCTCGAGCATGGTCACC+AGG 0.422711 5_2:-45717465 Msa0771960:CDS
CGTTTCCAGTTTCTTTGTCA+AGG 0.424584 5_2:-45716998 Msa0771960:CDS
AATGGCAGAAAATGTAGTTA+AGG 0.429021 5_2:+45714112 None:intergenic
TTCCCTTGGGTGGTGAATGA+AGG 0.433449 5_2:-45717126 Msa0771960:CDS
TCCCATTCTGCAACGCTCCT+TGG 0.434195 5_2:+45715810 None:intergenic
AACGGAACCGAAGAAGGTCT+TGG 0.439421 5_2:-45716070 Msa0771960:CDS
AGCATCCACCAAAGGGTAAC+CGG 0.442152 5_2:+45717074 None:intergenic
GGTTACCCTTTGGTGGATGC+TGG 0.446690 5_2:-45717072 Msa0771960:CDS
CAGAATCTTCAAGTAGTACT+AGG 0.447575 5_2:-45715715 Msa0771960:CDS
CAAGCTGCTGGTATTGAACT+TGG 0.454507 5_2:-45716202 Msa0771960:CDS
AGGAAGGACCGGTTACCCTT+TGG 0.454831 5_2:-45717082 Msa0771960:CDS
AGAGGTGCTTGTGGGTCATA+AGG 0.463043 5_2:+45718719 None:intergenic
GTTTGGAAATTTCAGTACAT+TGG 0.463402 5_2:-45714319 Msa0771960:three_prime_UTR
GCATTAACAACCTTCATAAA+CGG 0.463566 5_2:-45717423 Msa0771960:CDS
ACATTTGTACAAGAAGCAAA+AGG 0.465025 5_2:+45714274 None:intergenic
TGTTCCAGAGTGGTCGCCGC+AGG 0.467747 5_2:-45715672 Msa0771960:CDS
TGAAGCAAAGATTCAAAAGT+TGG 0.469069 5_2:+45714196 None:intergenic
GAAGCCTGCGGCGACCACTC+TGG 0.470149 5_2:+45715668 None:intergenic
GTTAGAGCAGGTGCTGTAGT+AGG 0.472709 5_2:-45719795 Msa0771960:CDS
ATGGTGGCTTAAGAATAGTT+TGG 0.473463 5_2:-45719715 Msa0771960:CDS
CTGTCGAATTCACGACCATC+AGG 0.474245 5_2:+45716868 None:intergenic
ATGTCCTGAGGAAAAGCAAT+AGG 0.475441 5_2:+45716028 None:intergenic
CTTGTTTGATTCGGACAAGA+TGG 0.475620 5_2:+45717295 None:intergenic
TCTCAAGATCAGCATCCAAA+AGG 0.479207 5_2:+45716929 None:intergenic
GTGGTGGATGCAGTATAGTT+TGG 0.481299 5_2:-45719866 Msa0771960:CDS
TTTGCTTCACTCTTAAACTT+GGG 0.483861 5_2:-45714182 Msa0771960:three_prime_UTR
CAATATAGAAAACAAATAAA+GGG 0.488855 5_2:-45719934 Msa0771960:five_prime_UTR
AGAAGAAGAAGAAACTTCTT+CGG 0.489072 5_2:-45715900 Msa0771960:CDS
TTGGAAGTTGTGAAATCCAC+TGG 0.489572 5_2:-45719615 Msa0771960:CDS
TTAGAACAAATGACGAGGAT+TGG 0.489841 5_2:+45720163 None:intergenic
TCAAGAGCTGCAGCAGAAAA+CGG 0.494972 5_2:-45716088 Msa0771960:CDS
CACCATCTTGAAACCCTACC+AGG 0.495232 5_2:+45719732 None:intergenic
TTGCAGCTTCCTTGGAGATG+GGG 0.496860 5_2:-45716973 Msa0771960:CDS
AGTCATGAAAGGCCTCTACT+TGG 0.497704 5_2:-45717162 Msa0771960:CDS
ATGAGAGAGTTGTGGGCTAC+TGG 0.498793 5_2:-45717048 Msa0771960:CDS
TCTTCGGTTCGAAACTCGGC+AGG 0.500512 5_2:-45715884 Msa0771960:CDS
AAGGACCGGTTACCCTTTGG+TGG 0.502290 5_2:-45717079 Msa0771960:CDS
CAAGTTAACACTTTCTTCGC+CGG 0.502530 5_2:+45717245 None:intergenic
GATCTTGAGAGCGATGCTCT+TGG 0.503245 5_2:-45716916 Msa0771960:CDS
GGCAGAAAATGTAGTTAAGG+AGG 0.508133 5_2:+45714115 None:intergenic
GCAGAAAACGGAACCGAAGA+AGG 0.508391 5_2:-45716076 Msa0771960:CDS
TTGGTCTTAGAGAGTATTCA+AGG 0.508724 5_2:-45717209 Msa0771960:CDS
TGCTGGAATGAGAGAGTTGT+GGG 0.509242 5_2:-45717055 Msa0771960:CDS
AATCAAAAGTTGTGAATGGT+TGG 0.510452 5_2:+45718768 None:intergenic
TGCAGCTTCCTTGGAGATGG+GGG 0.511485 5_2:-45716972 Msa0771960:CDS
ACTAGGAGAGAAAGAGATGG+AGG 0.512828 5_2:-45715698 Msa0771960:CDS
ACAATGCACCTCACGGTACT+CGG 0.514485 5_2:-45715973 Msa0771960:CDS
AAAGAATCAAAAGTTGTGAA+TGG 0.514889 5_2:+45718764 None:intergenic
CTAGCAGCAGGTGTTAGAGC+AGG 0.515660 5_2:-45719807 Msa0771960:CDS
TCGGCGCTACCAGGATCAAA+TGG 0.518616 5_2:-45715954 Msa0771960:CDS
CAGACTTGAAGCAGGGGATG+TGG 0.519619 5_2:-45714444 Msa0771960:CDS
CCATGGATGATGTATCCATT+CGG 0.522322 5_2:+45716246 None:intergenic
GAAGAAGGACAATATTATCC+TGG 0.525684 5_2:-45719750 Msa0771960:CDS
CTCATTCCAGCATCCACCAA+AGG 0.525962 5_2:+45717066 None:intergenic
GAGGCCTTTCATGACTATAA+GGG 0.526163 5_2:+45717169 None:intergenic
TCACGGTACTCGGCGCTACC+AGG 0.527329 5_2:-45715963 Msa0771960:CDS
AAAGTGTCCTTCTGATACAT+TGG 0.527386 5_2:-45717526 Msa0771960:CDS
AGTACTAGGAGAGAAAGAGA+TGG 0.527396 5_2:-45715701 Msa0771960:CDS
TATCCTTCATTCACCACCCA+AGG 0.528784 5_2:+45717123 None:intergenic
GTGGGAGAAGAGGTGCTTGT+GGG 0.530368 5_2:+45718711 None:intergenic
CTGGTAGGGTTTCAAGATGG+TGG 0.531385 5_2:-45719731 Msa0771960:CDS
TCTATTTCCACAATTGGAAG+AGG 0.531905 5_2:+45716169 None:intergenic
TACTTGGTACCATTTGATCC+TGG 0.532087 5_2:+45715945 None:intergenic
ATACCATGCAGACTTGAAGC+AGG 0.532221 5_2:-45714452 Msa0771960:CDS
TTGAGAGCGATGCTCTTGGT+TGG 0.534497 5_2:-45716912 Msa0771960:CDS
AACCAAGGAGCGTTGCAGAA+TGG 0.534665 5_2:-45715812 Msa0771960:CDS
TGCTTCTTGTACAAATGTGT+AGG 0.535501 5_2:-45714269 Msa0771960:three_prime_UTR
CGTCGCACATATTCTCCATT+CGG 0.536251 5_2:+45716298 None:intergenic
ATATGGGCACCTGAAGAAGA+AGG 0.536975 5_2:-45719765 Msa0771960:CDS
AAATAGTGGCACTGAGACAA+AGG 0.537669 5_2:+45720124 None:intergenic
TTGGTTCAGAAGAGATCTGA+GGG 0.537889 5_2:-45719847 Msa0771960:CDS
AAACTACCCTCTTCCAATTG+TGG 0.538617 5_2:-45716176 Msa0771960:CDS
ATGACGAGGATTGGTTGAGT+GGG 0.539303 5_2:+45720172 None:intergenic
TGGGATGAAGACCATCGGAT+TGG 0.540025 5_2:-45714403 Msa0771960:CDS
GATAACCCTGCACTAGCAGC+AGG 0.540067 5_2:-45719819 Msa0771960:CDS
CAGAAGAGATCTGAGGGTTG+AGG 0.541540 5_2:-45719841 Msa0771960:CDS
ACTGATTCTGGTGCATTCCA+TGG 0.541816 5_2:+45716229 None:intergenic
AGATTTATTGTATGAACCAT+GGG 0.542783 5_2:-45718810 Msa0771960:CDS
AAGGAAATTCTAACCGCTCA+AGG 0.545321 5_2:-45718857 Msa0771960:CDS
CATTTGTACAAGAAGCAAAA+GGG 0.546777 5_2:+45714275 None:intergenic
CTACTGGTTGGCTACATGAT+CGG 0.546843 5_2:-45717032 Msa0771960:CDS
TCCTCCATTTGTATGTCCTG+AGG 0.550035 5_2:+45716016 None:intergenic
AAGGACAATATTATCCTGGT+AGG 0.551662 5_2:-45719746 Msa0771960:CDS
AGATACTGAATATGTTTCCA+TGG 0.552224 5_2:+45713933 None:intergenic
AGATCCATTGTCACTTGTGA+GGG 0.553177 5_2:-45718891 Msa0771960:CDS
CTCAAGATCAGCATCCAAAA+GGG 0.553803 5_2:+45716930 None:intergenic
ACTCTAGAAGAAGTCATACT+TGG 0.554108 5_2:+45715929 None:intergenic
AGGACAATATTATCCTGGTA+GGG 0.555378 5_2:-45719745 Msa0771960:CDS
CCGATGGTCTTCATCCCACT+TGG 0.555532 5_2:+45714408 None:intergenic
ACTGAAATTTCCAAACACAT+TGG 0.556965 5_2:+45714326 None:intergenic
GATCAGTGGACCGTTTATGA+AGG 0.558630 5_2:+45717413 None:intergenic
CCGAATGGATACATCATCCA+TGG 0.560349 5_2:-45716246 Msa0771960:CDS
TCATTCCAGCATCCACCAAA+GGG 0.560356 5_2:+45717067 None:intergenic
GCATGGAGACAAGGAAGGAC+CGG 0.561971 5_2:-45717093 Msa0771960:CDS
GAAGATTTGAGTGGCTCCAG+TGG 0.562621 5_2:+45719599 None:intergenic
CAGATTTATTGTATGAACCA+TGG 0.564037 5_2:-45718811 Msa0771960:CDS
GGTGGGAGAAGAGGTGCTTG+TGG 0.564135 5_2:+45718710 None:intergenic
ACGCACTTCTTGCTCGAGCA+TGG 0.564346 5_2:-45717473 Msa0771960:CDS
AATGACGAGGATTGGTTGAG+TGG 0.566296 5_2:+45720171 None:intergenic
TTGTTTGCGTTACTCCACCC+TGG 0.566759 5_2:+45717447 None:intergenic
TCCCCTGCTTCAAGTCTGCA+TGG 0.569526 5_2:+45714449 None:intergenic
CATTTAATGTAATATCAGTA+AGG 0.570309 5_2:-45714093 Msa0771960:three_prime_UTR
TCCTCAGGACATACAAATGG+AGG 0.573201 5_2:-45716017 Msa0771960:CDS
GAATCAGTACTCCAAGCTGC+TGG 0.576235 5_2:-45716214 Msa0771960:CDS
TTCTTAGAGTACTCGATCAG+TGG 0.580821 5_2:+45717399 None:intergenic
ATGGAGAATATGTGCGACGT+TGG 0.583479 5_2:-45716294 Msa0771960:CDS
TGGAGAGAGAAATGAGGTTG+TGG 0.585202 5_2:+45717356 None:intergenic
AACTTAAGGTGTCCAAGTAG+AGG 0.586454 5_2:+45717150 None:intergenic
AACAAATGCAAATGCAAGAG+AGG 0.588191 5_2:-45715840 Msa0771960:CDS
GTGGGTCATAAGGCATGCTA+AGG 0.588329 5_2:+45718729 None:intergenic
AAGATGTCATCAAGTGGTGG+TGG 0.591044 5_2:-45719882 Msa0771960:CDS
CAAGTTCAATACCAGCAGCT+TGG 0.592599 5_2:+45716203 None:intergenic
TCGAGTACTCTAAGAATCGA+AGG 0.592996 5_2:-45717392 Msa0771960:CDS
ATAGAAAACAAATAAAGGGT+AGG 0.593991 5_2:-45719930 Msa0771960:five_prime_UTR
TGATCCCTCACAAGTGACAA+TGG 0.594519 5_2:+45718887 None:intergenic
TTAAGGCATGGAGACAAGGA+AGG 0.595232 5_2:-45717098 Msa0771960:CDS
CAGATCCATTGTCACTTGTG+AGG 0.595539 5_2:-45718892 Msa0771960:CDS
GGATGATGTATCCATTCGGT+TGG 0.597383 5_2:+45716250 None:intergenic
ATCCTGGTAGGGTTTCAAGA+TGG 0.598980 5_2:-45719734 Msa0771960:CDS
GCAGAAAATGTAGTTAAGGA+GGG 0.599217 5_2:+45714116 None:intergenic
AGGAAATTCTAACCGCTCAA+GGG 0.600050 5_2:-45718856 Msa0771960:CDS
GGAAATGCAATCTCACCAAG+TGG 0.600524 5_2:-45714423 Msa0771960:CDS
TACCATGCAGACTTGAAGCA+GGG 0.600888 5_2:-45714451 Msa0771960:CDS
CGACAGAATCGATAATCCAC+AGG 0.602554 5_2:-45716851 Msa0771960:intron
CTATTTCCACAATTGGAAGA+GGG 0.607403 5_2:+45716170 None:intergenic
TTGCAAGATTACCAACCGAA+TGG 0.609726 5_2:-45716261 Msa0771960:CDS
GACGAGGATTGGTTGAGTGG+GGG 0.609945 5_2:+45720174 None:intergenic
GCCTTTCATGACTATAAGGG+TGG 0.610222 5_2:+45717172 None:intergenic
TTTGGTTCAGAAGAGATCTG+AGG 0.610823 5_2:-45719848 Msa0771960:CDS
TCAAACACCAATGTATCAGA+AGG 0.614857 5_2:+45717519 None:intergenic
ACCACCCTTATAGTCATGAA+AGG 0.615076 5_2:-45717173 Msa0771960:CDS
CTCGAGCATGGTCACCAGGG+TGG 0.616762 5_2:-45717461 Msa0771960:CDS
TACATGTATCTCCAATCCGA+TGG 0.617380 5_2:+45714392 None:intergenic
ATCCTTCATTCACCACCCAA+GGG 0.621653 5_2:+45717124 None:intergenic
CTAACAATCTTAGATGTCAA+CGG 0.623444 5_2:+45714009 None:intergenic
AAGTTGTAATGAGAAAATAG+TGG 0.624256 5_2:+45720110 None:intergenic
TCAGAGAAGTTTGAAGCCTG+CGG 0.625323 5_2:+45715656 None:intergenic
GCGAATGAAGGAAATGAAGC+CGG 0.625392 5_2:-45717264 Msa0771960:CDS
AGCAAAGATTCAAAAGTTGG+TGG 0.626379 5_2:+45714199 None:intergenic
GCAAGAGAGGCGGTGAACCA+AGG 0.626545 5_2:-45715827 Msa0771960:CDS
GGATACAAGTGTGATCCGAA+TGG 0.626694 5_2:-45716313 Msa0771960:CDS
TTGGAAATTTCAGTACATTG+GGG 0.627601 5_2:-45714317 Msa0771960:three_prime_UTR
TGCAGCAACAGTGAGGCTCG+AGG 0.628158 5_2:-45716146 Msa0771960:CDS
TGACGAGGATTGGTTGAGTG+GGG 0.628886 5_2:+45720173 None:intergenic
ATGCTGGAATGAGAGAGTTG+TGG 0.634623 5_2:-45717056 Msa0771960:CDS
GGCACTGAGACAAAGGTCCA+AGG 0.635743 5_2:+45720131 None:intergenic
GGAATAGAAACACTAGACAA+AGG 0.636438 5_2:-45715790 Msa0771960:CDS
AGGGTGGAGTAACGCAAACA+AGG 0.637628 5_2:-45717445 Msa0771960:CDS
AGGAAGCACTTATACAGATG+TGG 0.637665 5_2:-45716126 Msa0771960:CDS
CCAAGTGGGATGAAGACCAT+CGG 0.638886 5_2:-45714408 Msa0771960:CDS
TTGCTCGAGCATGGTCACCA+GGG 0.639347 5_2:-45717464 Msa0771960:CDS
ATATCTGGTACTCTACCTGA+TGG 0.639584 5_2:-45716883 Msa0771960:CDS
TAACACCTGCTGCTAGTGCA+GGG 0.643822 5_2:+45719814 None:intergenic
ACTTCTCCGAAATGCAGATG+TGG 0.646155 5_2:+45717336 None:intergenic
ATGGTTGAAGAAGATTTGAG+TGG 0.647851 5_2:+45719590 None:intergenic
GAGAGTTGTGGGCTACTGGT+TGG 0.649242 5_2:-45717044 Msa0771960:CDS
ACTACTTGAAGATTCTGCTG+TGG 0.651572 5_2:+45715721 None:intergenic
ATTAGGAACAATGCACCTCA+CGG 0.651645 5_2:-45715980 Msa0771960:CDS
TGTGAGGGATCATAGAGCAA+AGG 0.653336 5_2:-45718876 Msa0771960:CDS
TGGAAATTTCAGTACATTGG+GGG 0.657364 5_2:-45714316 Msa0771960:three_prime_UTR
ACCATGCAGACTTGAAGCAG+GGG 0.666579 5_2:-45714450 Msa0771960:CDS
AAATGCAAATGCAAGAGAGG+CGG 0.669683 5_2:-45715837 Msa0771960:CDS
TGTGTGAAGATGTCATCAAG+TGG 0.673978 5_2:-45719888 Msa0771960:exon
ATGGAGGTGTTGTTCCAGAG+TGG 0.679190 5_2:-45715682 Msa0771960:CDS
CAGATGTGGAGAGAGAAATG+AGG 0.688093 5_2:+45717350 None:intergenic
AAATAGATGCAGCAACAGTG+AGG 0.702577 5_2:-45716153 Msa0771960:CDS
ACGTACAGTAATCCCTTGAG+CGG 0.706453 5_2:+45718844 None:intergenic
GTGAAGATGTCATCAAGTGG+TGG 0.713099 5_2:-45719885 Msa0771960:exon
GAAATGCAATCTCACCAAGT+GGG 0.713881 5_2:-45714422 Msa0771960:CDS
TAACTGCTGATTGATGACCA+TGG 0.715054 5_2:-45713950 Msa0771960:three_prime_UTR
TGGTAGCGCCGAGTACCGTG+AGG 0.721320 5_2:+45715965 None:intergenic
AGAGATTAGAACAAATGACG+AGG 0.731365 5_2:+45720158 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GATAGATTAATAATAATTTA+AGG + chr5_2:45714845-45714864 None:intergenic 10.0%
!!! CTTATTTCTATAATTTTTTT+CGG + chr5_2:45717654-45717673 None:intergenic 10.0%
!!! AATAAAACTATTTTCAATAT+AGG - chr5_2:45718789-45718808 Msa0771960:CDS 10.0%
!!! AAAAATATAGCATTACTTTT+GGG + chr5_2:45714170-45714189 None:intergenic 15.0%
!! TCAATATAGAAAACAAATAA+AGG - chr5_2:45714264-45714283 Msa0771960:three_prime_UTR 15.0%
!! CAATATAGAAAACAAATAAA+GGG - chr5_2:45714265-45714284 Msa0771960:three_prime_UTR 15.0%
!!! TAATTATATTTTTGCAGTTT+AGG - chr5_2:45714954-45714973 Msa0771960:intron 15.0%
!! AGTTTATTACCAAATAATAA+TGG + chr5_2:45715117-45715136 None:intergenic 15.0%
!!! ATATTTTGTTTTGTTTTTTC+TGG - chr5_2:45715240-45715259 Msa0771960:intron 15.0%
!! TAAATAATGTGATTATACTT+TGG + chr5_2:45716052-45716071 None:intergenic 15.0%
!!! TTTTTAAACAAACGTATTTT+TGG + chr5_2:45716335-45716354 None:intergenic 15.0%
!!! CATATTTTTATTTCCTTATT+TGG - chr5_2:45717416-45717435 Msa0771960:CDS 15.0%
!!! TAAAGTACATAGTTTTATTA+AGG + chr5_2:45719062-45719081 None:intergenic 15.0%
!! GTAATAGATAAAAAATCATT+TGG - chr5_2:45719426-45719445 Msa0771960:intron 15.0%
!! CAAAATATATACTTTACAAT+AGG + chr5_2:45719959-45719978 None:intergenic 15.0%
!!! TTTGTTTTTATGTTTAAATG+CGG - chr5_2:45720148-45720167 Msa0771960:five_prime_UTR 15.0%
!! GAAATATTGAAAAATCTACA+TGG - chr5_2:45713957-45713976 Msa0771960:three_prime_UTR 20.0%
!!! ACCAAATTTAGAATTTTTCT+TGG - chr5_2:45714132-45714151 Msa0771960:three_prime_UTR 20.0%
!! TCCAAGAAAAATTCTAAATT+TGG + chr5_2:45714136-45714155 None:intergenic 20.0%
!!! CAAAAATATAGCATTACTTT+TGG + chr5_2:45714171-45714190 None:intergenic 20.0%
!!! CAAAAGTAATGCTATATTTT+TGG - chr5_2:45714169-45714188 Msa0771960:three_prime_UTR 20.0%
!!! TCTATATTGATGAAGATTTT+AGG + chr5_2:45714254-45714273 None:intergenic 20.0%
!! ATAAAAACTGACCATATAAA+TGG + chr5_2:45714631-45714650 None:intergenic 20.0%
!! TTATACAAAACAAAAGAAAC+AGG + chr5_2:45714741-45714760 None:intergenic 20.0%
!! TCTTAGTTACCATTATTATT+TGG - chr5_2:45715105-45715124 Msa0771960:intron 20.0%
!! AAAAAGTTGAAATAAAAGTG+AGG + chr5_2:45715559-45715578 None:intergenic 20.0%
!! AAATTATCCATATTGAGAAA+AGG - chr5_2:45715665-45715684 Msa0771960:CDS 20.0%
!! TATACATCAACAATGAAATT+TGG + chr5_2:45716145-45716164 None:intergenic 20.0%
!!! TTTATTTCCTTATTTGGAAA+AGG - chr5_2:45717422-45717441 Msa0771960:CDS 20.0%
!! TGAAAATTGTAAACAACTAA+TGG - chr5_2:45718969-45718988 Msa0771960:intron 20.0%
!! GATAGTAAAAAAGAAAACAT+GGG + chr5_2:45719265-45719284 None:intergenic 20.0%
!! GTCTATCAAGAAAATTATTA+AGG - chr5_2:45719321-45719340 Msa0771960:intron 20.0%
!! AAAATTATTAAGGATGTGTT+TGG - chr5_2:45719331-45719350 Msa0771960:intron 20.0%
!! AAATTATTAAGGATGTGTTT+GGG - chr5_2:45719332-45719351 Msa0771960:intron 20.0%
!!! GATATTTTTGTAATACATTC+AGG + chr5_2:45719486-45719505 None:intergenic 20.0%
!! TAACTAACAGAATACATATT+TGG + chr5_2:45719542-45719561 None:intergenic 20.0%
!! CTTACTGATATTACATTAAA+TGG + chr5_2:45720108-45720127 None:intergenic 20.0%
!! CATTTAATGTAATATCAGTA+AGG - chr5_2:45720106-45720125 Msa0771960:five_prime_UTR 20.0%
! AAGTTGTAATGAGAAAATAG+TGG + chr5_2:45714092-45714111 None:intergenic 25.0%
! CATTGTATTTCATCTCTTTA+TGG - chr5_2:45714228-45714247 Msa0771960:three_prime_UTR 25.0%
! ATAGAAAACAAATAAAGGGT+AGG - chr5_2:45714269-45714288 Msa0771960:three_prime_UTR 25.0%
!!! TGTAGTAGGTGTTTTTATAT+GGG - chr5_2:45714418-45714437 Msa0771960:CDS 25.0%
! ATCTTCTTCAACCATTTATA+TGG - chr5_2:45714617-45714636 Msa0771960:intron 25.0%
! TAGTTAAAGGACTAATTTGA+TGG - chr5_2:45714908-45714927 Msa0771960:intron 25.0%
!!! CTAATTTGATGGATTAAAAG+TGG - chr5_2:45714919-45714938 Msa0771960:intron 25.0%
! GATATTACTAAGCAAAAACT+CGG + chr5_2:45715041-45715060 None:intergenic 25.0%
! AGATTTATTGTATGAACCAT+GGG - chr5_2:45715389-45715408 Msa0771960:intron 25.0%
! AAAGAATCAAAAGTTGTGAA+TGG + chr5_2:45715438-45715457 None:intergenic 25.0%
!!! TCACAACTTTTGATTCTTTT+TGG - chr5_2:45715439-45715458 Msa0771960:intron 25.0%
!!! CACAACTTTTGATTCTTTTT+GGG - chr5_2:45715440-45715459 Msa0771960:intron 25.0%
!! AAACCTGGAATAATTCTTTT+AGG + chr5_2:45715513-45715532 None:intergenic 25.0%
! AATAAAAGTGAGGCTAAAAA+AGG + chr5_2:45715549-45715568 None:intergenic 25.0%
!! ATGTATTCCTTTTCTCAATA+TGG + chr5_2:45715675-45715694 None:intergenic 25.0%
!! AAAAAGATGCAAAAGGTATA+AGG - chr5_2:45715732-45715751 Msa0771960:CDS 25.0%
! TTTCAATTATCAATCCAAAG+TGG + chr5_2:45715774-45715793 None:intergenic 25.0%
!!! TCTTCTTATTTTTGTCGAAT+CGG + chr5_2:45715843-45715862 None:intergenic 25.0%
! ATAATGTGATTATACTTTGG+TGG + chr5_2:45716049-45716068 None:intergenic 25.0%
! TAAAGGTTCAACAAATATGT+TGG - chr5_2:45716187-45716206 Msa0771960:CDS 25.0%
! TAATGAAACACAAAAGTTGT+AGG + chr5_2:45716252-45716271 None:intergenic 25.0%
!! GTATTTTCATAGCGAAAAAT+AGG + chr5_2:45716290-45716309 None:intergenic 25.0%
! TACCATTGCAAATATATGTT+TGG - chr5_2:45716307-45716326 Msa0771960:CDS 25.0%
! ATCCAAACATATATTTGCAA+TGG + chr5_2:45716312-45716331 None:intergenic 25.0%
! AAAAAACTCTACAGATATGT+TGG - chr5_2:45716351-45716370 Msa0771960:intron 25.0%
! AAGAACTAAGAATATCTGTA+TGG + chr5_2:45716411-45716430 None:intergenic 25.0%
! TAAAGTCAAAACATGAAACA+TGG + chr5_2:45716606-45716625 None:intergenic 25.0%
! TGCTGTTATAAACATTTCTT+TGG - chr5_2:45717475-45717494 Msa0771960:CDS 25.0%
! TCAAATAGATTATCCAAACA+TGG + chr5_2:45717524-45717543 None:intergenic 25.0%
! AATAAGCTAAAAACAGACTT+TGG - chr5_2:45717668-45717687 Msa0771960:intron 25.0%
! CATGACAATATAAGAAAAGA+GGG + chr5_2:45717788-45717807 None:intergenic 25.0%
! ACATGACAATATAAGAAAAG+AGG + chr5_2:45717789-45717808 None:intergenic 25.0%
!!! ATTATGTCATTTTCAGTTTG+AGG - chr5_2:45717864-45717883 Msa0771960:intron 25.0%
!!! TTATGTCATTTTCAGTTTGA+GGG - chr5_2:45717865-45717884 Msa0771960:intron 25.0%
!! ATAATCCTACAACTACATTT+TGG - chr5_2:45718433-45718452 Msa0771960:intron 25.0%
! CAATATGTAGATGATGAAAA+TGG - chr5_2:45718567-45718586 Msa0771960:intron 25.0%
!! TTAAGTTGTTTATCCAAACT+GGG + chr5_2:45718702-45718721 None:intergenic 25.0%
!! ATTAAGCTTTTTATCCAACT+GGG + chr5_2:45718816-45718835 None:intergenic 25.0%
!! GCTTATTTGAGTTTATTTAC+TGG + chr5_2:45719026-45719045 None:intergenic 25.0%
! TCAAATAAGCTAATTCAAAC+TGG - chr5_2:45719036-45719055 Msa0771960:intron 25.0%
! GGATAGTAAAAAAGAAAACA+TGG + chr5_2:45719266-45719285 None:intergenic 25.0%
! ACTCTTCAATTTAAAAGAAC+AGG + chr5_2:45719287-45719306 None:intergenic 25.0%
!! TGTTCTTTTAAATTGAAGAG+TGG - chr5_2:45719286-45719305 Msa0771960:intron 25.0%
! ATTACTCCACTATTAATCAA+GGG + chr5_2:45719411-45719430 None:intergenic 25.0%
! TATTACTCCACTATTAATCA+AGG + chr5_2:45719412-45719431 None:intergenic 25.0%
! ATGTATTCTGTTAGTTACTT+TGG - chr5_2:45719545-45719564 Msa0771960:intron 25.0%
! AAACAAAAATACACATTCGA+GGG + chr5_2:45719571-45719590 None:intergenic 25.0%
!! TGTCTTCTTTTAGTAGTTTA+CGG + chr5_2:45719605-45719624 None:intergenic 25.0%
! TTTGGAAATTTCAGTACATT+GGG - chr5_2:45719881-45719900 Msa0771960:CDS 25.0%
!! ATATATTTTGTGTAGTGATC+AGG - chr5_2:45719969-45719988 Msa0771960:five_prime_UTR 25.0%
!! TATATTTTGTGTAGTGATCA+GGG - chr5_2:45719970-45719989 Msa0771960:five_prime_UTR 25.0%
TACATGGCATAAAAAAGTTG+TGG - chr5_2:45713973-45713992 Msa0771960:three_prime_UTR 30.0%
!! AATATAGCATTACTTTTGGG+TGG + chr5_2:45714167-45714186 None:intergenic 30.0%
!! CTGTAGTAGGTGTTTTTATA+TGG - chr5_2:45714417-45714436 Msa0771960:CDS 30.0%
TAATATTGTCCTTCTTCTTC+AGG + chr5_2:45714446-45714465 None:intergenic 30.0%
! GATTCATCTTTGAGAAATCT+TGG - chr5_2:45714515-45714534 Msa0771960:intron 30.0%
! GTTGATCTTTTTGTAACAAG+AGG + chr5_2:45714545-45714564 None:intergenic 30.0%
! TGATAGTGTTTCTTCTTTGT+TGG - chr5_2:45714565-45714584 Msa0771960:intron 30.0%
!! TCCCTCAATTGCTTTAAAAA+TGG - chr5_2:45714873-45714892 Msa0771960:intron 30.0%
!!! CCCATTTTTAAAGCAATTGA+GGG + chr5_2:45714877-45714896 None:intergenic 30.0%
!! CCCTCAATTGCTTTAAAAAT+GGG - chr5_2:45714874-45714893 Msa0771960:intron 30.0%
!!! TCCCATTTTTAAAGCAATTG+AGG + chr5_2:45714878-45714897 None:intergenic 30.0%
GGAGAAAGAATGATAGTTAA+AGG - chr5_2:45714895-45714914 Msa0771960:intron 30.0%
!! TGATGGATTAAAAGTGGTTT+AGG - chr5_2:45714925-45714944 Msa0771960:intron 30.0%
!! GATGGATTAAAAGTGGTTTA+GGG - chr5_2:45714926-45714945 Msa0771960:intron 30.0%
AAGAGTAAGAGTGATAGTTT+AGG - chr5_2:45714985-45715004 Msa0771960:intron 30.0%
CAGATTTATTGTATGAACCA+TGG - chr5_2:45715388-45715407 Msa0771960:intron 30.0%
AATCAAAAGTTGTGAATGGT+TGG + chr5_2:45715434-45715453 None:intergenic 30.0%
!! CTGGAATAATTCTTTTAGGT+GGG + chr5_2:45715509-45715528 None:intergenic 30.0%
ACATAGCAAAAAGATGCAAA+AGG - chr5_2:45715725-45715744 Msa0771960:CDS 30.0%
CATCAACAATGAAATTTGGA+AGG + chr5_2:45716141-45716160 None:intergenic 30.0%
ACAAAAGTTGTACAAGTACT+TGG - chr5_2:45716546-45716565 Msa0771960:intron 30.0%
GGCAATACAACAGATAATAT+AGG + chr5_2:45716585-45716604 None:intergenic 30.0%
GCATTAACAACCTTCATAAA+CGG - chr5_2:45716776-45716795 Msa0771960:intron 30.0%
! AACTTGTTTCTCAAGTCAAT+TGG - chr5_2:45716971-45716990 Msa0771960:CDS 30.0%
! GGTGAATGAAGGATATTTTA+AGG - chr5_2:45717084-45717103 Msa0771960:CDS 30.0%
!!! ATGAAGGATATTTTAAGGCA+TGG - chr5_2:45717089-45717108 Msa0771960:CDS 30.0%
! ATGGGGGATGAAATATTTTT+GGG - chr5_2:45717243-45717262 Msa0771960:CDS 30.0%
!!! ATATTTTTGGGATACCCTTT+TGG - chr5_2:45717255-45717274 Msa0771960:CDS 30.0%
! CGTTTTTCCTTTTCCAAATA+AGG + chr5_2:45717432-45717451 None:intergenic 30.0%
GAAATGTTTATAACAGCAAC+AGG + chr5_2:45717473-45717492 None:intergenic 30.0%
AAATAAAACACGTCCATGTT+TGG - chr5_2:45717508-45717527 Msa0771960:CDS 30.0%
AAATGAGTGTATCTATCACT+AGG + chr5_2:45717842-45717861 None:intergenic 30.0%
AGAAGAAGAAGAAACTTCTT+CGG - chr5_2:45718299-45718318 Msa0771960:intron 30.0%
GTAGATGATGAAAATGGTAT+AGG - chr5_2:45718573-45718592 Msa0771960:intron 30.0%
! CTTAAGTTGTTTATCCAAAC+TGG + chr5_2:45718703-45718722 None:intergenic 30.0%
! TTAAGCTTTTTATCCAACTG+GGG + chr5_2:45718815-45718834 None:intergenic 30.0%
! CATTAAGCTTTTTATCCAAC+TGG + chr5_2:45718817-45718836 None:intergenic 30.0%
CAGTTGGATAAAAAGCTTAA+TGG - chr5_2:45718815-45718834 Msa0771960:CDS 30.0%
TTTGAAAACAGCTTATGACA+TGG + chr5_2:45718995-45719014 None:intergenic 30.0%
ATAAACATGTTGAGTGACAA+AGG + chr5_2:45719165-45719184 None:intergenic 30.0%
!!! TAGCTTTTTTACCATTGAGT+TGG + chr5_2:45719226-45719245 None:intergenic 30.0%
TTACTCCACTATTAATCAAG+GGG + chr5_2:45719410-45719429 None:intergenic 30.0%
AACATCTTCAGACATATTCA+AGG + chr5_2:45719454-45719473 None:intergenic 30.0%
CAAACAAAAATACACATTCG+AGG + chr5_2:45719572-45719591 None:intergenic 30.0%
!! CTCGAATGTGTATTTTTGTT+TGG - chr5_2:45719570-45719589 Msa0771960:intron 30.0%
! GAGATACATGTACTCATTTT+GGG - chr5_2:45719818-45719837 Msa0771960:CDS 30.0%
ACTGAAATTTCCAAACACAT+TGG + chr5_2:45719876-45719895 None:intergenic 30.0%
GTTTGGAAATTTCAGTACAT+TGG - chr5_2:45719880-45719899 Msa0771960:CDS 30.0%
TTGGAAATTTCAGTACATTG+GGG - chr5_2:45719882-45719901 Msa0771960:CDS 30.0%
CATTTGTACAAGAAGCAAAA+GGG + chr5_2:45719927-45719946 None:intergenic 30.0%
ACATTTGTACAAGAAGCAAA+AGG + chr5_2:45719928-45719947 None:intergenic 30.0%
TGAAGCAAAGATTCAAAAGT+TGG + chr5_2:45720006-45720025 None:intergenic 30.0%
TTTGCTTCACTCTTAAACTT+GGG - chr5_2:45720017-45720036 Msa0771960:five_prime_UTR 30.0%
AATGGCAGAAAATGTAGTTA+AGG + chr5_2:45720090-45720109 None:intergenic 30.0%
CTAACAATCTTAGATGTCAA+CGG + chr5_2:45720193-45720212 None:intergenic 30.0%
AGATACTGAATATGTTTCCA+TGG + chr5_2:45720269-45720288 None:intergenic 30.0%
TTAGAACAAATGACGAGGAT+TGG + chr5_2:45714039-45714058 None:intergenic 35.0%
AGAGATTAGAACAAATGACG+AGG + chr5_2:45714044-45714063 None:intergenic 35.0%
GAAGAAGGACAATATTATCC+TGG - chr5_2:45714449-45714468 Msa0771960:CDS 35.0%
AAGGACAATATTATCCTGGT+AGG - chr5_2:45714453-45714472 Msa0771960:CDS 35.0%
AGGACAATATTATCCTGGTA+GGG - chr5_2:45714454-45714473 Msa0771960:CDS 35.0%
ATGGTGGCTTAAGAATAGTT+TGG - chr5_2:45714484-45714503 Msa0771960:intron 35.0%
ATGGTTGAAGAAGATTTGAG+TGG + chr5_2:45714612-45714631 None:intergenic 35.0%
! TTGCATGATTTTGTTCTTGC+TGG - chr5_2:45714692-45714711 Msa0771960:intron 35.0%
CTATCACTCTTACTCTTATG+TGG + chr5_2:45714982-45715001 None:intergenic 35.0%
AGCAAAAACTCGGTATCATA+TGG + chr5_2:45715031-45715050 None:intergenic 35.0%
! ACAATTGACTCTAGACATCT+TGG - chr5_2:45715062-45715081 Msa0771960:intron 35.0%
! CCTGGAATAATTCTTTTAGG+TGG + chr5_2:45715510-45715529 None:intergenic 35.0%
CCACCTAAAAGAATTATTCC+AGG - chr5_2:45715507-45715526 Msa0771960:intron 35.0%
GTATAAGGAAAATTCCACAG+TGG - chr5_2:45715747-45715766 Msa0771960:CDS 35.0%
AATCGGCAAAGATTAAGTCA+CGG + chr5_2:45715826-45715845 None:intergenic 35.0%
AATGTCTCTGTCTCAAAACT+CGG - chr5_2:45715871-45715890 Msa0771960:CDS 35.0%
! AGATCACGAGCTTCTATTTT+CGG - chr5_2:45715932-45715951 Msa0771960:CDS 35.0%
GGAAGGACTAATAGTTAATC+AGG + chr5_2:45716124-45716143 None:intergenic 35.0%
ACTTGCTTCTCAGTCAAAAT+CGG - chr5_2:45716221-45716240 Msa0771960:CDS 35.0%
CATGACACTTACGTAATTGA+TGG - chr5_2:45716494-45716513 Msa0771960:intron 35.0%
! TTGTACAAGTACTTGGTAGT+TGG - chr5_2:45716553-45716572 Msa0771960:intron 35.0%
AACATTTCTTGCCATGTTTC+AGG - chr5_2:45716641-45716660 Msa0771960:intron 35.0%
TTGATACATCACCTGAAACA+TGG + chr5_2:45716655-45716674 None:intergenic 35.0%
! AAAGTGTCCTTCTGATACAT+TGG - chr5_2:45716673-45716692 Msa0771960:intron 35.0%
TCAAACACCAATGTATCAGA+AGG + chr5_2:45716683-45716702 None:intergenic 35.0%
! TCCGAATCAAACAAGTCTTT+TGG - chr5_2:45716912-45716931 Msa0771960:CDS 35.0%
! CCCAAAAGACTTGTTTGATT+CGG + chr5_2:45716916-45716935 None:intergenic 35.0%
! CCGAATCAAACAAGTCTTTT+GGG - chr5_2:45716913-45716932 Msa0771960:CDS 35.0%
!! TTGGTCTTAGAGAGTATTCA+AGG - chr5_2:45716990-45717009 Msa0771960:CDS 35.0%
! ACACCTTAAGTTTTTCCCTT+GGG - chr5_2:45717060-45717079 Msa0771960:CDS 35.0%
!!! TATTTTAAGGCATGGAGACA+AGG - chr5_2:45717097-45717116 Msa0771960:CDS 35.0%
CAAAACCTTGACAAAGAAAC+TGG + chr5_2:45717209-45717228 None:intergenic 35.0%
! GATGGGGGATGAAATATTTT+TGG - chr5_2:45717242-45717261 Msa0771960:CDS 35.0%
CTATTTCCACAATTGGAAGA+GGG + chr5_2:45718032-45718051 None:intergenic 35.0%
TCTATTTCCACAATTGGAAG+AGG + chr5_2:45718033-45718052 None:intergenic 35.0%
! TTTTCCTCAGGACATACAAA+TGG - chr5_2:45718179-45718198 Msa0771960:intron 35.0%
AGGAAAGACATGAACCTATT+AGG - chr5_2:45718202-45718221 Msa0771960:intron 35.0%
! ACTCTAGAAGAAGTCATACT+TGG + chr5_2:45718273-45718292 None:intergenic 35.0%
TCTCTTGCATTTGCATTTGT+TGG + chr5_2:45718360-45718379 None:intergenic 35.0%
AACAAATGCAAATGCAAGAG+AGG - chr5_2:45718359-45718378 Msa0771960:intron 35.0%
GGAATAGAAACACTAGACAA+AGG - chr5_2:45718409-45718428 Msa0771960:intron 35.0%
CAGAATCTTCAAGTAGTACT+AGG - chr5_2:45718484-45718503 Msa0771960:intron 35.0%
! ATTTCTCAAAACCACTGGTT+TGG - chr5_2:45718676-45718695 Msa0771960:intron 35.0%
CTTATTTCCATAAACTCTGC+TGG + chr5_2:45718948-45718967 None:intergenic 35.0%
!! TATGTTCTAGAATCCTCACA+TGG + chr5_2:45719129-45719148 None:intergenic 35.0%
!! ATTGAGTTGGATCCATTACA+TGG + chr5_2:45719213-45719232 None:intergenic 35.0%
!! ATGTAATGGATCCAACTCAA+TGG - chr5_2:45719212-45719231 Msa0771960:intron 35.0%
TATTAAGGATGTGTTTGGGA+TGG - chr5_2:45719336-45719355 Msa0771960:intron 35.0%
!! AGGTTTTATAGACCAGAGAA+GGG - chr5_2:45719359-45719378 Msa0771960:intron 35.0%
ATCTTCCCCTTGATTAATAG+TGG - chr5_2:45719402-45719421 Msa0771960:intron 35.0%
! GTGTGTTTTGCTAGTCAATT+TGG - chr5_2:45719513-45719532 Msa0771960:intron 35.0%
TACTAAAAGAAGACATGTGC+TGG - chr5_2:45719610-45719629 Msa0771960:CDS 35.0%
ACTGTAGTCTATGAATGTAC+TGG + chr5_2:45719651-45719670 None:intergenic 35.0%
! GGAGATACATGTACTCATTT+TGG - chr5_2:45719817-45719836 Msa0771960:CDS 35.0%
!! TTGCTGATTTCCAATGTGTT+TGG - chr5_2:45719863-45719882 Msa0771960:CDS 35.0%
TGGAAATTTCAGTACATTGG+GGG - chr5_2:45719883-45719902 Msa0771960:exon 35.0%
TGCTTCTTGTACAAATGTGT+AGG - chr5_2:45719930-45719949 Msa0771960:five_prime_UTR 35.0%
AGCAAAGATTCAAAAGTTGG+TGG + chr5_2:45720003-45720022 None:intergenic 35.0%
CTTTGCTTCACTCTTAAACT+TGG - chr5_2:45720016-45720035 Msa0771960:five_prime_UTR 35.0%
! GGGTTTGTGATGATGATTTA+AGG - chr5_2:45720037-45720056 Msa0771960:five_prime_UTR 35.0%
GCAGAAAATGTAGTTAAGGA+GGG + chr5_2:45720086-45720105 None:intergenic 35.0%
TGTTCTAATCTCTCTCTCCT+TGG - chr5_2:45714051-45714070 Msa0771960:three_prime_UTR 40.0%
! AAATAGTGGCACTGAGACAA+AGG + chr5_2:45714078-45714097 None:intergenic 40.0%
TGTGTGAAGATGTCATCAAG+TGG - chr5_2:45714311-45714330 Msa0771960:three_prime_UTR 40.0%
! TTTGGTTCAGAAGAGATCTG+AGG - chr5_2:45714351-45714370 Msa0771960:exon 40.0%
TTGGTTCAGAAGAGATCTGA+GGG - chr5_2:45714352-45714371 Msa0771960:exon 40.0%
TTGGAAGTTGTGAAATCCAC+TGG - chr5_2:45714584-45714603 Msa0771960:intron 40.0%
! TCTAGACATCTTGGTAGTTG+TGG - chr5_2:45715071-45715090 Msa0771960:intron 40.0%
! AGATCCATTGTCACTTGTGA+GGG - chr5_2:45715308-45715327 Msa0771960:intron 40.0%
AAGGAAATTCTAACCGCTCA+AGG - chr5_2:45715342-45715361 Msa0771960:intron 40.0%
AGGAAATTCTAACCGCTCAA+GGG - chr5_2:45715343-45715362 Msa0771960:intron 40.0%
!! ATTCTTTTAGGTGGGAGAAG+AGG + chr5_2:45715501-45715520 None:intergenic 40.0%
AAGTGAGGCTAAAAAAGGAG+AGG + chr5_2:45715544-45715563 None:intergenic 40.0%
AACTCTTGCGGTTCTTAGTT+TGG - chr5_2:45715625-45715644 Msa0771960:intron 40.0%
TCACGGCTAAGACATATACA+TGG + chr5_2:45715904-45715923 None:intergenic 40.0%
ATGTATATGTCTTAGCCGTG+AGG - chr5_2:45715903-45715922 Msa0771960:CDS 40.0%
! ATGATAACGCCAGTTGTTGT+TGG - chr5_2:45715955-45715974 Msa0771960:CDS 40.0%
! TCTGAAACACCAACAACAAC+TGG + chr5_2:45715967-45715986 None:intergenic 40.0%
CTACAGTAGACCACTTTGAT+AGG + chr5_2:45716021-45716040 None:intergenic 40.0%
ATCAAAGTGGTCTACTGTAG+AGG - chr5_2:45716021-45716040 Msa0771960:CDS 40.0%
TCAAAGTGGTCTACTGTAGA+GGG - chr5_2:45716022-45716041 Msa0771960:CDS 40.0%
CTTGCTTCTCAGTCAAAATC+GGG - chr5_2:45716222-45716241 Msa0771960:CDS 40.0%
!! TGCAACAGAGTGCTGATTAA+AGG - chr5_2:45716463-45716482 Msa0771960:intron 40.0%
! TTCTTAGAGTACTCGATCAG+TGG + chr5_2:45716803-45716822 None:intergenic 40.0%
! TCGAGTACTCTAAGAATCGA+AGG - chr5_2:45716807-45716826 Msa0771960:intron 40.0%
!! CTTGTTTGATTCGGACAAGA+TGG + chr5_2:45716907-45716926 None:intergenic 40.0%
CAAGTTAACACTTTCTTCGC+CGG + chr5_2:45716957-45716976 None:intergenic 40.0%
ACCACCCTTATAGTCATGAA+AGG - chr5_2:45717026-45717045 Msa0771960:CDS 40.0%
GAGGCCTTTCATGACTATAA+GGG + chr5_2:45717033-45717052 None:intergenic 40.0%
AGAGGCCTTTCATGACTATA+AGG + chr5_2:45717034-45717053 None:intergenic 40.0%
! AACTTAAGGTGTCCAAGTAG+AGG + chr5_2:45717052-45717071 None:intergenic 40.0%
! GACACCTTAAGTTTTTCCCT+TGG - chr5_2:45717059-45717078 Msa0771960:CDS 40.0%
CGTTTCCAGTTTCTTTGTCA+AGG - chr5_2:45717201-45717220 Msa0771960:CDS 40.0%
CTCAAGATCAGCATCCAAAA+GGG + chr5_2:45717272-45717291 None:intergenic 40.0%
TCTCAAGATCAGCATCCAAA+AGG + chr5_2:45717273-45717292 None:intergenic 40.0%
CTTGGTTGGCAGTATATATC+TGG - chr5_2:45717301-45717320 Msa0771960:CDS 40.0%
ATATCTGGTACTCTACCTGA+TGG - chr5_2:45717316-45717335 Msa0771960:CDS 40.0%
GCTAAAAACAGACTTTGGTC+AGG - chr5_2:45717673-45717692 Msa0771960:intron 40.0%
GGCTGAAACTAGAAACAGTT+GGG + chr5_2:45717767-45717786 None:intergenic 40.0%
!! GTTGGTAATCTTGCAAGTTC+AGG + chr5_2:45717934-45717953 None:intergenic 40.0%
TTGCAAGATTACCAACCGAA+TGG - chr5_2:45717938-45717957 Msa0771960:intron 40.0%
CCATGGATGATGTATCCATT+CGG + chr5_2:45717956-45717975 None:intergenic 40.0%
AAACTACCCTCTTCCAATTG+TGG - chr5_2:45718023-45718042 Msa0771960:intron 40.0%
GCTGCATCTATTTCCACAAT+TGG + chr5_2:45718039-45718058 None:intergenic 40.0%
AAATAGATGCAGCAACAGTG+AGG - chr5_2:45718046-45718065 Msa0771960:intron 40.0%
!! AGGAAGCACTTATACAGATG+TGG - chr5_2:45718073-45718092 Msa0771960:intron 40.0%
!! AACACCTATTGCTTTTCCTC+AGG - chr5_2:45718167-45718186 Msa0771960:intron 40.0%
ATGTCCTGAGGAAAAGCAAT+AGG + chr5_2:45718174-45718193 None:intergenic 40.0%
TGAGGTGCATTGTTCCTAAT+AGG + chr5_2:45718219-45718238 None:intergenic 40.0%
ATTAGGAACAATGCACCTCA+CGG - chr5_2:45718219-45718238 Msa0771960:intron 40.0%
TACTTGGTACCATTTGATCC+TGG + chr5_2:45718257-45718276 None:intergenic 40.0%
! AACTTCTTCGGTTCGAAACT+CGG - chr5_2:45718311-45718330 Msa0771960:intron 40.0%
AAATGCAAATGCAAGAGAGG+CGG - chr5_2:45718362-45718381 Msa0771960:intron 40.0%
CTCAGCCAAAATGTAGTTGT+AGG + chr5_2:45718441-45718460 None:intergenic 40.0%
ACTACTTGAAGATTCTGCTG+TGG + chr5_2:45718481-45718500 None:intergenic 40.0%
AGTACTAGGAGAGAAAGAGA+TGG - chr5_2:45718498-45718517 Msa0771960:intron 40.0%
AGTCTCACCAATTGATGAGT+TGG - chr5_2:45718628-45718647 Msa0771960:intron 40.0%
GTGAGATTTCTCAAAACCAC+TGG - chr5_2:45718671-45718690 Msa0771960:intron 40.0%
! TTTTCAATATAGGCCCCAGT+TGG - chr5_2:45718799-45718818 Msa0771960:CDS 40.0%
ATGCTATCCAGCAGAGTTTA+TGG - chr5_2:45718938-45718957 Msa0771960:intron 40.0%
!! TTCTAGAATCCTCACATGGA+TGG + chr5_2:45719125-45719144 None:intergenic 40.0%
ACATGTTGAGTGACAAAGGA+AGG + chr5_2:45719161-45719180 None:intergenic 40.0%
ACGTCGTCTAATCCATGTAA+TGG - chr5_2:45719198-45719217 Msa0771960:intron 40.0%
!! GAGGTTTTATAGACCAGAGA+AGG - chr5_2:45719358-45719377 Msa0771960:intron 40.0%
GAAATGCAATCTCACCAAGT+GGG - chr5_2:45719777-45719796 Msa0771960:CDS 40.0%
TACATGTATCTCCAATCCGA+TGG + chr5_2:45719810-45719829 None:intergenic 40.0%
GGCAGAAAATGTAGTTAAGG+AGG + chr5_2:45720087-45720106 None:intergenic 40.0%
! TAACTGCTGATTGATGACCA+TGG - chr5_2:45720249-45720268 Msa0771960:five_prime_UTR 40.0%
!! ATGACGAGGATTGGTTGAGT+GGG + chr5_2:45714030-45714049 None:intergenic 45.0%
!! AATGACGAGGATTGGTTGAG+TGG + chr5_2:45714031-45714050 None:intergenic 45.0%
GTGAAGATGTCATCAAGTGG+TGG - chr5_2:45714314-45714333 Msa0771960:three_prime_UTR 45.0%
AAGATGTCATCAAGTGGTGG+TGG - chr5_2:45714317-45714336 Msa0771960:three_prime_UTR 45.0%
!! GTGGTGGATGCAGTATAGTT+TGG - chr5_2:45714333-45714352 Msa0771960:three_prime_UTR 45.0%
ATATGGGCACCTGAAGAAGA+AGG - chr5_2:45714434-45714453 Msa0771960:CDS 45.0%
ATCCTGGTAGGGTTTCAAGA+TGG - chr5_2:45714465-45714484 Msa0771960:CDS 45.0%
! CAGATCCATTGTCACTTGTG+AGG - chr5_2:45715307-45715326 Msa0771960:intron 45.0%
TGATCCCTCACAAGTGACAA+TGG + chr5_2:45715315-45715334 None:intergenic 45.0%
TGTGAGGGATCATAGAGCAA+AGG - chr5_2:45715323-45715342 Msa0771960:intron 45.0%
ACGTACAGTAATCCCTTGAG+CGG + chr5_2:45715358-45715377 None:intergenic 45.0%
! TTTTCATCGTTCACGTCCCA+TGG + chr5_2:45715408-45715427 None:intergenic 45.0%
TGGGACGTGAACGATGAAAA+TGG - chr5_2:45715408-45715427 Msa0771960:intron 45.0%
GGAGAGGAACAAAGTAAACC+TGG + chr5_2:45715528-45715547 None:intergenic 45.0%
CATGAGTCACAGAACTCTTG+CGG - chr5_2:45715613-45715632 Msa0771960:intron 45.0%
! GCGGTTCTTAGTTTGGATTC+TGG - chr5_2:45715632-45715651 Msa0771960:intron 45.0%
AATTCCACAGTGGACCACTT+TGG - chr5_2:45715757-45715776 Msa0771960:CDS 45.0%
TTAAGTCACGGTCTCAGACA+TGG + chr5_2:45715814-45715833 None:intergenic 45.0%
TTTGATAGGTGGTACACGGT+TGG + chr5_2:45716007-45716026 None:intergenic 45.0%
CCACTTTGATAGGTGGTACA+CGG + chr5_2:45716011-45716030 None:intergenic 45.0%
CAGTAGACCACTTTGATAGG+TGG + chr5_2:45716018-45716037 None:intergenic 45.0%
CAAAGTGGTCTACTGTAGAG+GGG - chr5_2:45716023-45716042 Msa0771960:CDS 45.0%
GATCAGTGGACCGTTTATGA+AGG + chr5_2:45716789-45716808 None:intergenic 45.0%
TGGAGAGAGAAATGAGGTTG+TGG + chr5_2:45716846-45716865 None:intergenic 45.0%
CAGATGTGGAGAGAGAAATG+AGG + chr5_2:45716852-45716871 None:intergenic 45.0%
CTCTCTCCACATCTGCATTT+CGG - chr5_2:45716857-45716876 Msa0771960:CDS 45.0%
ACTTCTCCGAAATGCAGATG+TGG + chr5_2:45716866-45716885 None:intergenic 45.0%
! CAAGTCTTTTGGGCGAATGA+AGG - chr5_2:45716923-45716942 Msa0771960:CDS 45.0%
GCGAATGAAGGAAATGAAGC+CGG - chr5_2:45716935-45716954 Msa0771960:CDS 45.0%
GCCTTTCATGACTATAAGGG+TGG + chr5_2:45717030-45717049 None:intergenic 45.0%
AGTCATGAAAGGCCTCTACT+TGG - chr5_2:45717037-45717056 Msa0771960:CDS 45.0%
CCACCCAAGGGAAAAACTTA+AGG + chr5_2:45717066-45717085 None:intergenic 45.0%
! CCTTAAGTTTTTCCCTTGGG+TGG - chr5_2:45717063-45717082 Msa0771960:CDS 45.0%
ATCCTTCATTCACCACCCAA+GGG + chr5_2:45717078-45717097 None:intergenic 45.0%
TATCCTTCATTCACCACCCA+AGG + chr5_2:45717079-45717098 None:intergenic 45.0%
TTAAGGCATGGAGACAAGGA+AGG - chr5_2:45717101-45717120 Msa0771960:CDS 45.0%
TCATTCCAGCATCCACCAAA+GGG + chr5_2:45717135-45717154 None:intergenic 45.0%
ATGCTGGAATGAGAGAGTTG+TGG - chr5_2:45717143-45717162 Msa0771960:CDS 45.0%
TGCTGGAATGAGAGAGTTGT+GGG - chr5_2:45717144-45717163 Msa0771960:CDS 45.0%
! CTACTGGTTGGCTACATGAT+CGG - chr5_2:45717167-45717186 Msa0771960:CDS 45.0%
! TCAAGGTTTTGCAGCTTCCT+TGG - chr5_2:45717218-45717237 Msa0771960:CDS 45.0%
! TTTTGCAGCTTCCTTGGAGA+TGG - chr5_2:45717224-45717243 Msa0771960:CDS 45.0%
TTTGCAGCTTCCTTGGAGAT+GGG - chr5_2:45717225-45717244 Msa0771960:CDS 45.0%
TATTTCATCCCCCATCTCCA+AGG + chr5_2:45717238-45717257 None:intergenic 45.0%
CGACAGAATCGATAATCCAC+AGG - chr5_2:45717348-45717367 Msa0771960:CDS 45.0%
GGGCTGAAACTAGAAACAGT+TGG + chr5_2:45717768-45717787 None:intergenic 45.0%
GGATACAAGTGTGATCCGAA+TGG - chr5_2:45717886-45717905 Msa0771960:intron 45.0%
CGTCGCACATATTCTCCATT+CGG + chr5_2:45717904-45717923 None:intergenic 45.0%
GGATGATGTATCCATTCGGT+TGG + chr5_2:45717952-45717971 None:intergenic 45.0%
CCGAATGGATACATCATCCA+TGG - chr5_2:45717953-45717972 Msa0771960:intron 45.0%
! ACTGATTCTGGTGCATTCCA+TGG + chr5_2:45717973-45717992 None:intergenic 45.0%
CAAGTTCAATACCAGCAGCT+TGG + chr5_2:45717999-45718018 None:intergenic 45.0%
! CAAGCTGCTGGTATTGAACT+TGG - chr5_2:45717997-45718016 Msa0771960:intron 45.0%
TCAAGAGCTGCAGCAGAAAA+CGG - chr5_2:45718111-45718130 Msa0771960:intron 45.0%
TGAGTCTCCAAGACCTTCTT+CGG + chr5_2:45718139-45718158 None:intergenic 45.0%
TCCTCAGGACATACAAATGG+AGG - chr5_2:45718182-45718201 Msa0771960:intron 45.0%
TCCTCCATTTGTATGTCCTG+AGG + chr5_2:45718186-45718205 None:intergenic 45.0%
ACTAGGAGAGAAAGAGATGG+AGG - chr5_2:45718501-45718520 Msa0771960:intron 45.0%
! TCAGAGAAGTTTGAAGCCTG+CGG + chr5_2:45718546-45718565 None:intergenic 45.0%
CTACTTCTCCTTACTTGCAG+AGG - chr5_2:45718598-45718617 Msa0771960:intron 45.0%
CTCATCAATTGGTGAGACTC+TGG + chr5_2:45718627-45718646 None:intergenic 45.0%
! AATCTCACCCAGTTTGAGGT+AGG + chr5_2:45718659-45718678 None:intergenic 45.0%
GAGAAATCTCACCCAGTTTG+AGG + chr5_2:45718663-45718682 None:intergenic 45.0%
CCTCACATGGATGGTTGAAT+AGG + chr5_2:45719116-45719135 None:intergenic 45.0%
CCTATTCAACCATCCATGTG+AGG - chr5_2:45719113-45719132 Msa0771960:intron 45.0%
! TAAGGATGTGTTTGGGATGG+AGG - chr5_2:45719339-45719358 Msa0771960:intron 45.0%
ATACCATGCAGACTTGAAGC+AGG - chr5_2:45719747-45719766 Msa0771960:CDS 45.0%
TACCATGCAGACTTGAAGCA+GGG - chr5_2:45719748-45719767 Msa0771960:CDS 45.0%
GGAAATGCAATCTCACCAAG+TGG - chr5_2:45719776-45719795 Msa0771960:CDS 45.0%
!! TTTACAAAAATAAAATATAA+AGG - chr5_2:45716170-45716189 Msa0771960:CDS 5.0%
!! TGACGAGGATTGGTTGAGTG+GGG + chr5_2:45714029-45714048 None:intergenic 50.0%
CAGAAGAGATCTGAGGGTTG+AGG - chr5_2:45714358-45714377 Msa0771960:exon 50.0%
TAACACCTGCTGCTAGTGCA+GGG + chr5_2:45714388-45714407 None:intergenic 50.0%
! GTTAGAGCAGGTGCTGTAGT+AGG - chr5_2:45714404-45714423 Msa0771960:CDS 50.0%
CACCATCTTGAAACCCTACC+AGG + chr5_2:45714470-45714489 None:intergenic 50.0%
CTGGTAGGGTTTCAAGATGG+TGG - chr5_2:45714468-45714487 Msa0771960:CDS 50.0%
GAAGATTTGAGTGGCTCCAG+TGG + chr5_2:45714603-45714622 None:intergenic 50.0%
GTGGGTCATAAGGCATGCTA+AGG + chr5_2:45715473-45715492 None:intergenic 50.0%
!! AGAGGTGCTTGTGGGTCATA+AGG + chr5_2:45715483-45715502 None:intergenic 50.0%
AGTTCTGTGACTCATGCAGC+TGG + chr5_2:45715609-45715628 None:intergenic 50.0%
CAATCCAAAGTGGTCCACTG+TGG + chr5_2:45715764-45715783 None:intergenic 50.0%
CTGTCTCAAAACTCGGCACT+TGG - chr5_2:45715878-45715897 Msa0771960:CDS 50.0%
CCGTGTACCACCTATCAAAG+TGG - chr5_2:45716008-45716027 Msa0771960:CDS 50.0%
TTGTTTGCGTTACTCCACCC+TGG + chr5_2:45716755-45716774 None:intergenic 50.0%
AGGGTGGAGTAACGCAAACA+AGG - chr5_2:45716754-45716773 Msa0771960:intron 50.0%
TTCCCTTGGGTGGTGAATGA+AGG - chr5_2:45717073-45717092 Msa0771960:CDS 50.0%
AGCATCCACCAAAGGGTAAC+CGG + chr5_2:45717128-45717147 None:intergenic 50.0%
CTCATTCCAGCATCCACCAA+AGG + chr5_2:45717136-45717155 None:intergenic 50.0%
! ATGAGAGAGTTGTGGGCTAC+TGG - chr5_2:45717151-45717170 Msa0771960:CDS 50.0%
TTGCAGCTTCCTTGGAGATG+GGG - chr5_2:45717226-45717245 Msa0771960:CDS 50.0%
GATCTTGAGAGCGATGCTCT+TGG - chr5_2:45717283-45717302 Msa0771960:CDS 50.0%
TTGAGAGCGATGCTCTTGGT+TGG - chr5_2:45717287-45717306 Msa0771960:CDS 50.0%
CTGTCGAATTCACGACCATC+AGG + chr5_2:45717334-45717353 None:intergenic 50.0%
TGCAGAAGCAATTGCACCTG+TGG + chr5_2:45717367-45717386 None:intergenic 50.0%
!! GCAGCTTGGAGTACTGATTC+TGG + chr5_2:45717985-45718004 None:intergenic 50.0%
GAATCAGTACTCCAAGCTGC+TGG - chr5_2:45717985-45718004 Msa0771960:intron 50.0%
GCAGAAAACGGAACCGAAGA+AGG - chr5_2:45718123-45718142 Msa0771960:intron 50.0%
AACGGAACCGAAGAAGGTCT+TGG - chr5_2:45718129-45718148 Msa0771960:intron 50.0%
ACAATGCACCTCACGGTACT+CGG - chr5_2:45718226-45718245 Msa0771960:intron 50.0%
!! AACCAAGGAGCGTTGCAGAA+TGG - chr5_2:45718387-45718406 Msa0771960:intron 50.0%
!! ACCAAGGAGCGTTGCAGAAT+GGG - chr5_2:45718388-45718407 Msa0771960:intron 50.0%
!! ATGGAGGTGTTGTTCCAGAG+TGG - chr5_2:45718517-45718536 Msa0771960:intron 50.0%
TCTGGATGCCTCTGCAAGTA+AGG + chr5_2:45718609-45718628 None:intergenic 50.0%
GGCGTGTCCAACTCATCAAT+TGG + chr5_2:45718638-45718657 None:intergenic 50.0%
AGCTCATCACTTCCCTTCTC+TGG + chr5_2:45719374-45719393 None:intergenic 50.0%
ACCATGCAGACTTGAAGCAG+GGG - chr5_2:45719749-45719768 Msa0771960:CDS 50.0%
CCAAGTGGGATGAAGACCAT+CGG - chr5_2:45719791-45719810 Msa0771960:CDS 50.0%
TGGGATGAAGACCATCGGAT+TGG - chr5_2:45719796-45719815 Msa0771960:CDS 50.0%
!! GACGAGGATTGGTTGAGTGG+GGG + chr5_2:45714028-45714047 None:intergenic 55.0%
! GGCACTGAGACAAAGGTCCA+AGG + chr5_2:45714071-45714090 None:intergenic 55.0%
GATAACCCTGCACTAGCAGC+AGG - chr5_2:45714380-45714399 Msa0771960:CDS 55.0%
CTAACACCTGCTGCTAGTGC+AGG + chr5_2:45714389-45714408 None:intergenic 55.0%
CTAGCAGCAGGTGTTAGAGC+AGG - chr5_2:45714392-45714411 Msa0771960:CDS 55.0%
!! GTGGGAGAAGAGGTGCTTGT+GGG + chr5_2:45715491-45715510 None:intergenic 55.0%
ATGTCTTAGCCGTGAGGACG+TGG - chr5_2:45715909-45715928 Msa0771960:CDS 55.0%
TCGTGATCTCCACGTCCTCA+CGG + chr5_2:45715921-45715940 None:intergenic 55.0%
ACGCACTTCTTGCTCGAGCA+TGG - chr5_2:45716726-45716745 Msa0771960:intron 55.0%
TTGCTCGAGCATGGTCACCA+GGG - chr5_2:45716735-45716754 Msa0771960:intron 55.0%
GCATGGAGACAAGGAAGGAC+CGG - chr5_2:45717106-45717125 Msa0771960:CDS 55.0%
AGGAAGGACCGGTTACCCTT+TGG - chr5_2:45717117-45717136 Msa0771960:CDS 55.0%
AAGGACCGGTTACCCTTTGG+TGG - chr5_2:45717120-45717139 Msa0771960:CDS 55.0%
! GGTTACCCTTTGGTGGATGC+TGG - chr5_2:45717127-45717146 Msa0771960:CDS 55.0%
! GAGAGTTGTGGGCTACTGGT+TGG - chr5_2:45717155-45717174 Msa0771960:CDS 55.0%
TGCAGCTTCCTTGGAGATGG+GGG - chr5_2:45717227-45717246 Msa0771960:CDS 55.0%
TCGGCGCTACCAGGATCAAA+TGG - chr5_2:45718245-45718264 Msa0771960:intron 55.0%
! TCTTCGGTTCGAAACTCGGC+AGG - chr5_2:45718315-45718334 Msa0771960:intron 55.0%
TCCCATTCTGCAACGCTCCT+TGG + chr5_2:45718392-45718411 None:intergenic 55.0%
TGGACACGCCTACCTCAAAC+TGG - chr5_2:45718648-45718667 Msa0771960:intron 55.0%
GGACACGCCTACCTCAAACT+GGG - chr5_2:45718649-45718668 Msa0771960:intron 55.0%
!! ACCACTGGTTTGGCCCAGTT+TGG - chr5_2:45718686-45718705 Msa0771960:intron 55.0%
TCCAAACTGGGCCAAACCAG+TGG + chr5_2:45718690-45718709 None:intergenic 55.0%
TCCCCTGCTTCAAGTCTGCA+TGG + chr5_2:45719753-45719772 None:intergenic 55.0%
CAGACTTGAAGCAGGGGATG+TGG - chr5_2:45719755-45719774 Msa0771960:CDS 55.0%
CCGATGGTCTTCATCCCACT+TGG + chr5_2:45719794-45719813 None:intergenic 55.0%
!! GGTGGGAGAAGAGGTGCTTG+TGG + chr5_2:45715492-45715511 None:intergenic 60.0%
CTTGCTCGAGCATGGTCACC+AGG - chr5_2:45716734-45716753 Msa0771960:intron 60.0%
TGCAGCAACAGTGAGGCTCG+AGG - chr5_2:45718053-45718072 Msa0771960:intron 60.0%
GCAAGAGAGGCGGTGAACCA+AGG - chr5_2:45718372-45718391 Msa0771960:intron 60.0%
CTCGAGCATGGTCACCAGGG+TGG - chr5_2:45716738-45716757 Msa0771960:intron 65.0%
! TGGTAGCGCCGAGTACCGTG+AGG + chr5_2:45718237-45718256 None:intergenic 65.0%
TCACGGTACTCGGCGCTACC+AGG - chr5_2:45718236-45718255 Msa0771960:intron 65.0%
TGTTCCAGAGTGGTCGCCGC+AGG - chr5_2:45718527-45718546 Msa0771960:intron 65.0%
GAAGCCTGCGGCGACCACTC+TGG + chr5_2:45718534-45718553 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 45713924 45720297 45713924 ID=Msa0771960;Name=Msa0771960
chr5_2 mRNA 45713924 45720297 45713924 ID=Msa0771960-mRNA-1;Parent=Msa0771960;Name=Msa0771960-mRNA-1;_AED=0.08;_eAED=0.08;_QI=396|0.75|0.8|1|1|1|5|436|693
chr5_2 exon 45713924 45714487 45713924 ID=Msa0771960-mRNA-1:exon:13767;Parent=Msa0771960-mRNA-1
chr5_2 exon 45715633 45716341 45715633 ID=Msa0771960-mRNA-1:exon:13766;Parent=Msa0771960-mRNA-1
chr5_2 exon 45716852 45717558 45716852 ID=Msa0771960-mRNA-1:exon:13765;Parent=Msa0771960-mRNA-1
chr5_2 exon 45718693 45718911 45718693 ID=Msa0771960-mRNA-1:exon:13764;Parent=Msa0771960-mRNA-1
chr5_2 exon 45719583 45720297 45719583 ID=Msa0771960-mRNA-1:exon:13763;Parent=Msa0771960-mRNA-1
chr5_2 five_prime_UTR 45719902 45720297 45719902 ID=Msa0771960-mRNA-1:five_prime_utr;Parent=Msa0771960-mRNA-1
chr5_2 CDS 45719583 45719901 45719583 ID=Msa0771960-mRNA-1:cds;Parent=Msa0771960-mRNA-1
chr5_2 CDS 45718693 45718911 45718693 ID=Msa0771960-mRNA-1:cds;Parent=Msa0771960-mRNA-1
chr5_2 CDS 45716852 45717558 45716852 ID=Msa0771960-mRNA-1:cds;Parent=Msa0771960-mRNA-1
chr5_2 CDS 45715633 45716341 45715633 ID=Msa0771960-mRNA-1:cds;Parent=Msa0771960-mRNA-1
chr5_2 CDS 45714360 45714487 45714360 ID=Msa0771960-mRNA-1:cds;Parent=Msa0771960-mRNA-1
chr5_2 three_prime_UTR 45713924 45714359 45713924 ID=Msa0771960-mRNA-1:three_prime_utr;Parent=Msa0771960-mRNA-1
Gene Sequence

>Msa0771960

ATGTCATCAAGTGGTGGTGGATGCAGTATAGTTTGGTTCAGAAGAGATCTGAGGGTTGAGGATAACCCTGCACTAGCAGCAGGTGTTAGAGCAGGTGCTGTAGTAGGTGTTTTTATATGGGCACCTGAAGAAGAAGGACAATATTATCCTGGTAGGGTTTCAAGATGGTGGCTTAAGAATAGTTTGGCTCATCTTGATTCATCTTTGAGAAATCTTGGTACTCCTCTTGTTACAAAAAGATCAACTGATAGTGTTTCTTCTTTGTTGGAAGTTGTGAAATCCACTGGAGCCACTCAAATCTTCTTCAACCATTTATATGATCCATTGTCACTTGTGAGGGATCATAGAGCAAAGGAAATTCTAACCGCTCAAGGGATTACTGTACGTTCATTCAACTCAGATTTATTGTATGAACCATGGGACGTGAACGATGAAAATGGCCAACCATTCACAACTTTTGATTCTTTTTGGGAAAGATGCCTTAGCATGCCTTATGACCCACAAGCACCTCTTCTCCCACCTAAAAGAATTATTCCAGGTGATGTATCAAAGTGTCCTTCTGATACATTGGTGTTTGAAGACGATTTAGAGAAAGCGAGCAACGCACTTCTTGCTCGAGCATGGTCACCAGGGTGGAGTAACGCAAACAAGGCATTAACAACCTTCATAAACGGTCCACTGATCGAGTACTCTAAGAATCGAAGGAAAGCAGACAGTGCCACAACCTCATTTCTCTCTCCACATCTGCATTTCGGAGAAGTTAGTGTCAAGAAAGTATTCCATCTTGTCCGAATCAAACAAGTCTTTTGGGCGAATGAAGGAAATGAAGCCGGCGAAGAAAGTGTTAACTTGTTTCTCAAGTCAATTGGTCTTAGAGAGTATTCAAGGTACATTAGTTTCAACCACCCTTATAGTCATGAAAGGCCTCTACTTGGACACCTTAAGTTTTTCCCTTGGGTGGTGAATGAAGGATATTTTAAGGCATGGAGACAAGGAAGGACCGGTTACCCTTTGGTGGATGCTGGAATGAGAGAGTTGTGGGCTACTGGTTGGCTACATGATCGGATACGCGTTGTCGTTTCCAGTTTCTTTGTCAAGGTTTTGCAGCTTCCTTGGAGATGGGGGATGAAATATTTTTGGGATACCCTTTTGGATGCTGATCTTGAGAGCGATGCTCTTGGTTGGCAGTATATATCTGGTACTCTACCTGATGGTCGTGAATTCGACAGAATCGATAATCCACAGTTTGAGGGATACAAGTGTGATCCGAATGGAGAATATGTGCGACGTTGGCTTCCTGAACTTGCAAGATTACCAACCGAATGGATACATCATCCATGGAATGCACCAGAATCAGTACTCCAAGCTGCTGGTATTGAACTTGGCTCAAACTACCCTCTTCCAATTGTGGAAATAGATGCAGCAACAGTGAGGCTCGAGGAAGCACTTATACAGATGTGGCAGCTAGAAGCAGCATCAAGAGCTGCAGCAGAAAACGGAACCGAAGAAGGTCTTGGAGACTCAGCTGAATCAACACCTATTGCTTTTCCTCAGGACATACAAATGGAGGAAAGACATGAACCTATTAGGAACAATGCACCTCACGGTACTCGGCGCTACCAGGATCAAATGGTACCAAGTATGACTTCTTCTAGAGTGAGAGTAGAAGAAGAAGAAACTTCTTCGGTTCGAAACTCGGCAGGAGACAGCAGAGCTGAAGTGCCAACAAATGCAAATGCAAGAGAGGCGGTGAACCAAGGAGCGTTGCAGAATGGGAATAGAAACACTAGACAAAGGCATAATCCTACAACTACATTTTGGCTGAGAAATGCAGCTGAAGATTCCACAGCAGAATCTTCAAGTAGTACTAGGAGAGAAAGAGATGGAGGTGTTGTTCCAGAGTGGTCGCCGCAGGCTTCAAACTTCTCTGATCAATATGTAGATGATGAAAATGATAATACACATATATACCATGCAGACTTGAAGCAGGGGATGTGGAAATGCAATCTCACCAAGTGGGATGAAGACCATCGGATTGGAGATACATGTACTCATTTTGGGAAAGTATTGACGAATGATTAA

Protein sequence

>Msa0771960

MSSSGGGCSIVWFRRDLRVEDNPALAAGVRAGAVVGVFIWAPEEEGQYYPGRVSRWWLKNSLAHLDSSLRNLGTPLVTKRSTDSVSSLLEVVKSTGATQIFFNHLYDPLSLVRDHRAKEILTAQGITVRSFNSDLLYEPWDVNDENGQPFTTFDSFWERCLSMPYDPQAPLLPPKRIIPGDVSKCPSDTLVFEDDLEKASNALLARAWSPGWSNANKALTTFINGPLIEYSKNRRKADSATTSFLSPHLHFGEVSVKKVFHLVRIKQVFWANEGNEAGEESVNLFLKSIGLREYSRYISFNHPYSHERPLLGHLKFFPWVVNEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTLPDGREFDRIDNPQFEGYKCDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPLPIVEIDAATVRLEEALIQMWQLEAASRAAAENGTEEGLGDSAESTPIAFPQDIQMEERHEPIRNNAPHGTRRYQDQMVPSMTSSRVRVEEEETSSVRNSAGDSRAEVPTNANAREAVNQGALQNGNRNTRQRHNPTTTFWLRNAAEDSTAESSSSTRRERDGGVVPEWSPQASNFSDQYVDDENDNTHIYHADLKQGMWKCNLTKWDEDHRIGDTCTHFGKVLTND*