AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1342400


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1342400 MtrunA17_Chr3g0103441 99.528 212 1 0 12 223 1 212 1.35e-161 444
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1342400 AT5G19855.1 54.091 220 82 3 1 219 1 202 1.09e-81 243
Msa1342400 AT5G19855.2 45.679 162 69 3 1 161 1 144 1.81e-43 144

Find 72 sgRNAs with CRISPR-Local

Find 214 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGCTTAACCTTTATGCTAAA+TGG 0.110147 tig0005557:+44012 Msa1342400:CDS
TTTATTAAATAACTACTTAT+AGG 0.180622 tig0005557:+40760 Msa1342400:five_prime_UTR
TGAGATGAAGGATTTATAAT+TGG 0.183394 tig0005557:+44459 Msa1342400:three_prime_UTR
TTATAAAACCACGTATATTT+AGG 0.215191 tig0005557:-42064 None:intergenic
ATAAGTAGTTATTTAATAAA+AGG 0.234497 tig0005557:-40757 None:intergenic
TTGGACCTCAATAATTTATA+TGG 0.249901 tig0005557:+40571 Msa1342400:five_prime_UTR
TAATGGACTCTGTATTTAAA+AGG 0.281463 tig0005557:-44424 None:intergenic
TTGACTCTCCATTCCCTTCC+AGG 0.282181 tig0005557:-41128 None:intergenic
GTGGGAGCAATATCTGTTAT+TGG 0.291042 tig0005557:+40924 Msa1342400:CDS
GCGCGGCGGCGGAAGAACTA+TGG 0.291206 tig0005557:+41082 Msa1342400:CDS
GTTGTTGTTATTGTTATTGT+TGG 0.310405 tig0005557:+40880 Msa1342400:five_prime_UTR
TCTCAAACAATTCAAAATAA+TGG 0.320527 tig0005557:-44441 None:intergenic
CCTTGACCCATTTAGCATAA+AGG 0.329549 tig0005557:-44019 None:intergenic
GAGATGAAGGATTTATAATT+GGG 0.361430 tig0005557:+44460 Msa1342400:three_prime_UTR
TTTGATGGGAAAGAAGCATT+TGG 0.380847 tig0005557:+41055 Msa1342400:CDS
GACAGCAGCTCAGAATTAAT+TGG 0.381941 tig0005557:+44235 Msa1342400:CDS
TTACGAGAAAATGACACATT+TGG 0.385371 tig0005557:-44354 None:intergenic
AAGTTGGAACTTTGCTGTTA+CGG 0.388871 tig0005557:-40725 None:intergenic
GCTTAACCTTTATGCTAAAT+GGG 0.410431 tig0005557:+44013 Msa1342400:CDS
GAGGTCCAAAATTGTCCAAC+AGG 0.410809 tig0005557:-40557 None:intergenic
TTGAGATTCATATTAGTTGT+TGG 0.412533 tig0005557:-40999 None:intergenic
TGTTATTGGTTCATCAATGA+TGG 0.412805 tig0005557:+40938 Msa1342400:CDS
GAAGGTTGAAGAAGAGAAAG+AGG 0.415633 tig0005557:-40677 None:intergenic
CGCGGCGGCGGAAGAACTAT+GGG 0.427517 tig0005557:+41083 Msa1342400:CDS
GTATTTGTGAGAGAGGAATA+TGG 0.428924 tig0005557:+40902 Msa1342400:exon
CAATTTACATAATATAAATC+TGG 0.435763 tig0005557:-44385 None:intergenic
GTTACCATTGTTAGTGAGCT+TGG 0.439389 tig0005557:+41194 Msa1342400:CDS
CTAGGAATCAAACAAAAGAT+TGG 0.439962 tig0005557:-44290 None:intergenic
GACTCATGGAGACAGTAATA+TGG 0.445142 tig0005557:+44203 Msa1342400:CDS
AGAAAGAGGAAGCAGTTTGA+AGG 0.452121 tig0005557:-40663 None:intergenic
ACTAATATGAATCTCAAGAT+TGG 0.454557 tig0005557:+41005 Msa1342400:CDS
AGAAGCAACGCAGTAATGAT+AGG 0.467537 tig0005557:+41168 Msa1342400:CDS
CGGATGCAGAGTTTGTTTGA+AGG 0.480803 tig0005557:-40695 None:intergenic
TTCTGAGCTGCTGTCATCTG+AGG 0.484742 tig0005557:-44227 None:intergenic
AAGTAAACCAAAAGAAAAGA+AGG 0.486729 tig0005557:-40630 None:intergenic
TCAAATATCAGATGAAAACT+TGG 0.498143 tig0005557:+44165 Msa1342400:CDS
ATGAATCTCAAGATTGGTTG+TGG 0.515787 tig0005557:+41011 Msa1342400:CDS
AGAGTACCTTCCCAAGCAAT+CGG 0.524539 tig0005557:-43615 None:intergenic
TGAGCTTGGTGGTCAATATG+AGG 0.525773 tig0005557:+41208 Msa1342400:CDS
GTTAACCATATAAATTATTG+AGG 0.525850 tig0005557:-40576 None:intergenic
TAAAACCACGTATATTTAGG+TGG 0.529191 tig0005557:-42061 None:intergenic
CATTTGGAAAAGCGCGGCGG+CGG 0.533131 tig0005557:+41071 Msa1342400:CDS
GTTGATGAGGGAACGACTCA+TGG 0.541090 tig0005557:+44189 Msa1342400:CDS
CTGAAAGAGTGATGTTGACT+CGG 0.544416 tig0005557:+43991 Msa1342400:CDS
ATGAAAACTTGGAGTTGATG+AGG 0.546304 tig0005557:+44176 Msa1342400:CDS
GCTCAACTATTTCACGTACA+AGG 0.554693 tig0005557:+42000 Msa1342400:CDS
ACCATTGTTAGTGAGCTTGG+TGG 0.561493 tig0005557:+41197 Msa1342400:CDS
ATTGTTGGTATTTGTGAGAG+AGG 0.562373 tig0005557:+40895 Msa1342400:five_prime_UTR
GAAAGAGGAAGCAGTTTGAA+GGG 0.569048 tig0005557:-40662 None:intergenic
ACAAAAGATTGGAAACAGAA+AGG 0.569260 tig0005557:-44279 None:intergenic
TGAAAACTTGGAGTTGATGA+GGG 0.575874 tig0005557:+44177 Msa1342400:CDS
CCTTTATGCTAAATGGGTCA+AGG 0.576109 tig0005557:+44019 Msa1342400:CDS
TCTGAGCTGCTGTCATCTGA+GGG 0.576725 tig0005557:-44226 None:intergenic
AAAACCACGTATATTTAGGT+GGG 0.578910 tig0005557:-42060 None:intergenic
GAAGCAGTTTGAAGGGTGCA+AGG 0.581441 tig0005557:-40655 None:intergenic
TTACTGATCCTGGAAGGGAA+TGG 0.584500 tig0005557:+41120 Msa1342400:CDS
CATTTGGAAACAATACATGT+TGG 0.587080 tig0005557:-44338 None:intergenic
TTTGTGAGAGAGGAATATGG+TGG 0.587626 tig0005557:+40905 Msa1342400:exon
GTATCAAACAAACCACAAGA+TGG 0.596691 tig0005557:+43580 Msa1342400:CDS
TTTGCTGTTACGGTCAAAGA+CGG 0.597643 tig0005557:-40715 None:intergenic
AGTGCATCCACACACAAACA+TGG 0.606637 tig0005557:-40975 None:intergenic
AGTAAACCAAAAGAAAAGAA+GGG 0.619492 tig0005557:-40629 None:intergenic
TTGTGAGAGAGGAATATGGT+GGG 0.625325 tig0005557:+40906 Msa1342400:exon
ACCACCAAGCTCACTAACAA+TGG 0.632085 tig0005557:-41198 None:intergenic
ATAAAGTTTACACCTAGACT+AGG 0.637143 tig0005557:-44308 None:intergenic
CACAGGTCCATGTTTGTGTG+TGG 0.651586 tig0005557:+40968 Msa1342400:CDS
TCAATGATGGACTCACACAC+AGG 0.660019 tig0005557:+40951 Msa1342400:CDS
AAGAAGCATTTGGAAAAGCG+CGG 0.684459 tig0005557:+41065 Msa1342400:CDS
ATTTCACGTACAAGGCTGTG+AGG 0.686265 tig0005557:+42008 Msa1342400:CDS
AAGCATTTGGAAAAGCGCGG+CGG 0.723101 tig0005557:+41068 Msa1342400:CDS
GCGGCGGCGGAAGAACTATG+GGG 0.724394 tig0005557:+41084 Msa1342400:CDS
TGAACCCACCTAAATATACG+TGG 0.753733 tig0005557:+42056 Msa1342400:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAGTAGTTATTTAATAAA+AGG - tig0005557:40760-40779 None:intergenic 10.0%
!! TTTATTAAATAACTACTTAT+AGG + tig0005557:40760-40779 Msa1342400:five_prime_UTR 10.0%
!!! TTTGTATTTAAAATCTTATT+AGG + tig0005557:41430-41449 Msa1342400:intron 10.0%
!!! CTTTTATATAAATTAGAATA+TGG + tig0005557:41871-41890 Msa1342400:intron 10.0%
!! AAAGTAGAAAAAAAAAAAAA+AGG - tig0005557:43067-43086 None:intergenic 10.0%
!!! TTTTATTTAAATTTTCCTGT+TGG + tig0005557:40542-40561 Msa1342400:five_prime_UTR 15.0%
!! AATAGAAAACATTATATTCA+AGG - tig0005557:42132-42151 None:intergenic 15.0%
!! TTTGACCAATTATTTATTTA+AGG - tig0005557:42741-42760 None:intergenic 15.0%
!! TTCAAATTCAAATGTATTAT+TGG - tig0005557:43904-43923 None:intergenic 15.0%
!! AGATTAATATTGTTAAACAA+TGG - tig0005557:44109-44128 None:intergenic 15.0%
!! CAATTTACATAATATAAATC+TGG - tig0005557:44388-44407 None:intergenic 15.0%
!! GTTAACCATATAAATTATTG+AGG - tig0005557:40579-40598 None:intergenic 20.0%
!!! TAACATGATCTAAATTTTGT+TGG + tig0005557:41255-41274 Msa1342400:intron 20.0%
!! ATAGTTATAGCATCAATATT+AGG - tig0005557:41473-41492 None:intergenic 20.0%
!! CATATAAAGATTAAAAGTTG+AGG - tig0005557:41632-41651 None:intergenic 20.0%
!!! AAGTACATTCATATTTCTAA+TGG - tig0005557:41710-41729 None:intergenic 20.0%
!! AATTCTATAGTTCATAGTTA+CGG + tig0005557:41778-41797 Msa1342400:intron 20.0%
!! TTATAAAACCACGTATATTT+AGG - tig0005557:42067-42086 None:intergenic 20.0%
!! TCCTTCCTTAAATAAATAAT+TGG + tig0005557:42733-42752 Msa1342400:intron 20.0%
!! ACCAATTATTTATTTAAGGA+AGG - tig0005557:42737-42756 None:intergenic 20.0%
!! GATAGATGAAAGAATTATTT+AGG - tig0005557:42959-42978 None:intergenic 20.0%
!!! AACATCAACTTTTTTCTTAA+AGG - tig0005557:43440-43459 None:intergenic 20.0%
!! AAGTAATTACCATACTATAT+GGG - tig0005557:43516-43535 None:intergenic 20.0%
!! TAAGTAATTACCATACTATA+TGG - tig0005557:43517-43536 None:intergenic 20.0%
!!! ATTTATGTTTTGTTCTATGT+TGG + tig0005557:43547-43566 Msa1342400:intron 20.0%
!! GATGAAATGAATAATAACTA+GGG - tig0005557:43651-43670 None:intergenic 20.0%
!! AGATGAAATGAATAATAACT+AGG - tig0005557:43652-43671 None:intergenic 20.0%
!! AAGTGAATATGAATTATTCA+TGG - tig0005557:43950-43969 None:intergenic 20.0%
!!! CAAATTATTTTACATGTCTT+CGG - tig0005557:44074-44093 None:intergenic 20.0%
!!! ACATGTAAAATAATTTGTGA+AGG + tig0005557:44077-44096 Msa1342400:intron 20.0%
!! TCTCAAACAATTCAAAATAA+TGG - tig0005557:44444-44463 None:intergenic 20.0%
! TTGGACCTCAATAATTTATA+TGG + tig0005557:40571-40590 Msa1342400:five_prime_UTR 25.0%
! AGTAAACCAAAAGAAAAGAA+GGG - tig0005557:40632-40651 None:intergenic 25.0%
! AAGTAAACCAAAAGAAAAGA+AGG - tig0005557:40633-40652 None:intergenic 25.0%
!! TAAAAGGTATGCAAAAAAGT+TGG - tig0005557:40744-40763 None:intergenic 25.0%
!! GTTGTTGTTATTGTTATTGT+TGG + tig0005557:40880-40899 Msa1342400:five_prime_UTR 25.0%
! TTGAGATTCATATTAGTTGT+TGG - tig0005557:41002-41021 None:intergenic 25.0%
! ACTAATATGAATCTCAAGAT+TGG + tig0005557:41005-41024 Msa1342400:CDS 25.0%
!!! AACATTTTTTGAGTCAAGAT+TGG + tig0005557:41390-41409 Msa1342400:intron 25.0%
! AAATCTATTAATCACTGACA+CGG + tig0005557:41513-41532 Msa1342400:intron 25.0%
! AAAAGTTGAGGAAATACAAA+AGG - tig0005557:41620-41639 None:intergenic 25.0%
! AATGATCATTATTGAACAGA+AGG - tig0005557:41745-41764 None:intergenic 25.0%
! GTAAGTGAATTCTTTATTCT+AGG + tig0005557:42087-42106 Msa1342400:intron 25.0%
! ATACATGATGACTCTAATAT+AGG + tig0005557:42179-42198 Msa1342400:intron 25.0%
!! GAGCTCATAATTTTGTTAAA+AGG + tig0005557:42526-42545 Msa1342400:intron 25.0%
! AAACAACATTGGAAAAATCT+TGG - tig0005557:42579-42598 None:intergenic 25.0%
!! TTAACTAAAAGGACTTGTTT+GGG - tig0005557:42826-42845 None:intergenic 25.0%
!! TTTAACTAAAAGGACTTGTT+TGG - tig0005557:42827-42846 None:intergenic 25.0%
!!! AAACAAGTCCTTTTAGTTAA+AGG + tig0005557:42826-42845 Msa1342400:intron 25.0%
! AAACAAGTCCTTTAACTAAA+AGG - tig0005557:42837-42856 None:intergenic 25.0%
!!! TTTTAGTTAAAGGACTTGTT+TGG + tig0005557:42836-42855 Msa1342400:intron 25.0%
!! TTTAGTTAAAGGACTTGTTT+GGG + tig0005557:42837-42856 Msa1342400:intron 25.0%
! ATTATGTGTTGAACAAAAAG+AGG + tig0005557:43098-43117 Msa1342400:intron 25.0%
! TTATGTGTTGAACAAAAAGA+GGG + tig0005557:43099-43118 Msa1342400:intron 25.0%
! AATTGCAAATGTTAGTATGT+TGG - tig0005557:43204-43223 None:intergenic 25.0%
!! GTTTGATTTAAAAGTAGACA+TGG - tig0005557:43308-43327 None:intergenic 25.0%
!! TTTTACAATCCCATATAGTA+TGG + tig0005557:43504-43523 Msa1342400:intron 25.0%
!!! TGAGTATAGCTATATTTTAG+TGG - tig0005557:43690-43709 None:intergenic 25.0%
!! AGTTAATCAGATGCAAATTT+TGG - tig0005557:43783-43802 None:intergenic 25.0%
! ATAATTCATATTCACTTGAC+AGG + tig0005557:43953-43972 Msa1342400:intron 25.0%
! TCAAATATCAGATGAAAACT+TGG + tig0005557:44165-44184 Msa1342400:CDS 25.0%
!!! TAATGGACTCTGTATTTAAA+AGG - tig0005557:44427-44446 None:intergenic 25.0%
!!! TTTTGAATTGTTTGAGATGA+AGG + tig0005557:44447-44466 Msa1342400:three_prime_UTR 25.0%
! TGAGATGAAGGATTTATAAT+TGG + tig0005557:44459-44478 Msa1342400:three_prime_UTR 25.0%
! GAGATGAAGGATTTATAATT+GGG + tig0005557:44460-44479 Msa1342400:three_prime_UTR 25.0%
! ATTTTCCTGTTGGACAATTT+TGG + tig0005557:40552-40571 Msa1342400:five_prime_UTR 30.0%
!!! AGGGTGTGAGATTTTTTTAA+GGG - tig0005557:40613-40632 None:intergenic 30.0%
!!! AAGGGTGTGAGATTTTTTTA+AGG - tig0005557:40614-40633 None:intergenic 30.0%
!! TGTTATTGGTTCATCAATGA+TGG + tig0005557:40938-40957 Msa1342400:CDS 30.0%
! TGTTTTGTGGAAGAATTTGA+TGG + tig0005557:41040-41059 Msa1342400:CDS 30.0%
! GTTTTGTGGAAGAATTTGAT+GGG + tig0005557:41041-41060 Msa1342400:CDS 30.0%
!! CACTTTTGAGGATGTTAAAA+CGG + tig0005557:41232-41251 Msa1342400:CDS 30.0%
TGTTACAAACATTGAATCAG+AGG - tig0005557:41307-41326 None:intergenic 30.0%
! GATGAGTTGTTAATTTGAGA+TGG - tig0005557:41806-41825 None:intergenic 30.0%
TAGCAACAAAATTGTGATAG+TGG - tig0005557:41914-41933 None:intergenic 30.0%
AAAACCACGTATATTTAGGT+GGG - tig0005557:42063-42082 None:intergenic 30.0%
TAAAACCACGTATATTTAGG+TGG - tig0005557:42064-42083 None:intergenic 30.0%
! ATGTTTTCTATTTAGACGCA+TGG + tig0005557:42140-42159 Msa1342400:intron 30.0%
! GAGTGTCTAGAAAAGTTTTA+TGG - tig0005557:42236-42255 None:intergenic 30.0%
!! AATTTGCTTTTATGTCTGAG+AGG - tig0005557:42365-42384 None:intergenic 30.0%
! CAAAATTGCTCAATTTTGTC+CGG - tig0005557:42437-42456 None:intergenic 30.0%
!! AGGGAACAAAAGTGTTAAAA+AGG - tig0005557:42628-42647 None:intergenic 30.0%
!! TTCTAGAATCAGAAGAAAGA+AGG + tig0005557:42652-42671 Msa1342400:intron 30.0%
TCTAATATGCTAGACATTAG+AGG - tig0005557:42695-42714 None:intergenic 30.0%
AATTGGTCAAATGCATCTAA+AGG + tig0005557:42750-42769 Msa1342400:intron 30.0%
GGGAAAAACGAAAAACTTAA+AGG - tig0005557:42915-42934 None:intergenic 30.0%
!! GTTTTTCGTTTTTCCCAAAA+TGG + tig0005557:42781-42800 Msa1342400:intron 30.0%
! GAAACTTAAAGGACCATTTT+GGG - tig0005557:42797-42816 None:intergenic 30.0%
! TGAAACTTAAAGGACCATTT+TGG - tig0005557:42798-42817 None:intergenic 30.0%
!!! TTGGGACTTTTGAAACTTAA+AGG - tig0005557:42855-42874 None:intergenic 30.0%
!!! TTGGGACTTTTGAAACTTAA+AGG + tig0005557:42855-42874 Msa1342400:intron 30.0%
! TGAAACTTAAAGGACTTGTT+TGG + tig0005557:42865-42884 Msa1342400:intron 30.0%
! GAAACTTAAAGGACTTGTTT+GGG + tig0005557:42866-42885 Msa1342400:intron 30.0%
!!! TTGGGACTTTTGAAACTTAA+AGG + tig0005557:42855-42874 Msa1342400:intron 30.0%
TGAAACTTAAAGGATCACTT+TGG + tig0005557:42894-42913 Msa1342400:intron 30.0%
GAAACTTAAAGGATCACTTT+GGG + tig0005557:42895-42914 Msa1342400:intron 30.0%
GGGAAAAACGAAAAACTTAA+AGG + tig0005557:42915-42934 Msa1342400:intron 30.0%
TATGTGTTGAACAAAAAGAG+GGG + tig0005557:43100-43119 Msa1342400:intron 30.0%
TCAAAAGAAGTTAAAGGTCT+AGG + tig0005557:43154-43173 Msa1342400:intron 30.0%
CAAAAGAAGTTAAAGGTCTA+GGG + tig0005557:43155-43174 Msa1342400:intron 30.0%
CAAAAAGAAAATGAACACGA+CGG - tig0005557:43279-43298 None:intergenic 30.0%
!!! AGTACTTCATTTTTTGATCC+TGG + tig0005557:43373-43392 Msa1342400:intron 30.0%
ATTTGTCCTTTAATCAGCTT+AGG + tig0005557:43409-43428 Msa1342400:intron 30.0%
! ATAAAACGTTTTCCATCTTG+TGG - tig0005557:43595-43614 None:intergenic 30.0%
! ATGCAAATTTTGGATACTGA+GGG - tig0005557:43773-43792 None:intergenic 30.0%
GCTTAACCTTTATGCTAAAT+GGG + tig0005557:44013-44032 Msa1342400:CDS 30.0%
ACAAAAGATTGGAAACAGAA+AGG - tig0005557:44282-44301 None:intergenic 30.0%
CTAGGAATCAAACAAAAGAT+TGG - tig0005557:44293-44312 None:intergenic 30.0%
!! TTTTGTTTGATTCCTAGTCT+AGG + tig0005557:44296-44315 Msa1342400:three_prime_UTR 30.0%
ATAAAGTTTACACCTAGACT+AGG - tig0005557:44311-44330 None:intergenic 30.0%
CATTTGGAAACAATACATGT+TGG - tig0005557:44341-44360 None:intergenic 30.0%
TTACGAGAAAATGACACATT+TGG - tig0005557:44357-44376 None:intergenic 30.0%
!!! GATTTTTTTAAGGGTGTGTG+TGG - tig0005557:40604-40623 None:intergenic 35.0%
!! AAGTTGGAACTTTGCTGTTA+CGG - tig0005557:40728-40747 None:intergenic 35.0%
AACGTACACAGATGAAAAAG+TGG - tig0005557:40844-40863 None:intergenic 35.0%
ATTGTTGGTATTTGTGAGAG+AGG + tig0005557:40895-40914 Msa1342400:five_prime_UTR 35.0%
GTATTTGTGAGAGAGGAATA+TGG + tig0005557:40902-40921 Msa1342400:exon 35.0%
! ATGAATCTCAAGATTGGTTG+TGG + tig0005557:41011-41030 Msa1342400:CDS 35.0%
!! TTTGATGGGAAAGAAGCATT+TGG + tig0005557:41055-41074 Msa1342400:CDS 35.0%
! AGTAGTTCTTTTACTGATCC+TGG + tig0005557:41110-41129 Msa1342400:CDS 35.0%
! TTCTTTTACTGATCCTGGAA+GGG + tig0005557:41115-41134 Msa1342400:CDS 35.0%
! TCAATATGAGGACACTTTTG+AGG + tig0005557:41220-41239 Msa1342400:CDS 35.0%
CACCTTATATGACACTGATA+CGG + tig0005557:41543-41562 Msa1342400:intron 35.0%
ATCCGTATCAGTGTCATATA+AGG - tig0005557:41548-41567 None:intergenic 35.0%
GAGACTAAGTAAAGAGACTT+AGG - tig0005557:42400-42419 None:intergenic 35.0%
ATGAGCTCAAAGCAAATGTT+GGG - tig0005557:42514-42533 None:intergenic 35.0%
TATGAGCTCAAAGCAAATGT+TGG - tig0005557:42515-42534 None:intergenic 35.0%
AAATCTTGGAGTAGAGACAT+TGG - tig0005557:42565-42584 None:intergenic 35.0%
TGATCAATGACAATGCAGTT+GGG - tig0005557:42604-42623 None:intergenic 35.0%
ATGATCAATGACAATGCAGT+TGG - tig0005557:42605-42624 None:intergenic 35.0%
!! CTTCTGATTCTAGAACACAA+GGG - tig0005557:42647-42666 None:intergenic 35.0%
!! TCTTCTGATTCTAGAACACA+AGG - tig0005557:42648-42667 None:intergenic 35.0%
! TGATGAAGAAGGTAGAGTTT+TGG - tig0005557:43002-43021 None:intergenic 35.0%
AAGTGTATGAGTGATGAAGA+AGG - tig0005557:43013-43032 None:intergenic 35.0%
TGATCCAAAACCTAGACAAA+CGG + tig0005557:43037-43056 Msa1342400:intron 35.0%
TTGAACAAAAAGAGGGGAAT+GGG + tig0005557:43106-43125 Msa1342400:intron 35.0%
AAGGGGTCAAAAGAAGTTAA+AGG + tig0005557:43148-43167 Msa1342400:intron 35.0%
! TAAAGGTCTAGGGTTCAAAT+CGG + tig0005557:43165-43184 Msa1342400:intron 35.0%
GTGTAACCTAAGCTGATTAA+AGG - tig0005557:43418-43437 None:intergenic 35.0%
GTATCAAACAAACCACAAGA+TGG + tig0005557:43580-43599 Msa1342400:CDS 35.0%
! AAACGTTTTATCCGATTGCT+TGG + tig0005557:43604-43623 Msa1342400:CDS 35.0%
! AACGTTTTATCCGATTGCTT+GGG + tig0005557:43605-43624 Msa1342400:CDS 35.0%
GGATACTGAGGGTAAAAAAA+TGG - tig0005557:43762-43781 None:intergenic 35.0%
! GATGCAAATTTTGGATACTG+AGG - tig0005557:43774-43793 None:intergenic 35.0%
GTCTTGCGAATGGAAAAATT+AGG - tig0005557:43854-43873 None:intergenic 35.0%
GGCTTAACCTTTATGCTAAA+TGG + tig0005557:44012-44031 Msa1342400:CDS 35.0%
!! ATGAAAACTTGGAGTTGATG+AGG + tig0005557:44176-44195 Msa1342400:CDS 35.0%
!! TGAAAACTTGGAGTTGATGA+GGG + tig0005557:44177-44196 Msa1342400:CDS 35.0%
!!! ATGTGTCATTTTCTCGTAAC+AGG + tig0005557:44358-44377 Msa1342400:three_prime_UTR 35.0%
! CTCACACCCTTCTTTTCTTT+TGG + tig0005557:40623-40642 Msa1342400:five_prime_UTR 40.0%
GAAAGAGGAAGCAGTTTGAA+GGG - tig0005557:40665-40684 None:intergenic 40.0%
AGAAAGAGGAAGCAGTTTGA+AGG - tig0005557:40666-40685 None:intergenic 40.0%
GAAGGTTGAAGAAGAGAAAG+AGG - tig0005557:40680-40699 None:intergenic 40.0%
!! TTTGCTGTTACGGTCAAAGA+CGG - tig0005557:40718-40737 None:intergenic 40.0%
TTTGTGAGAGAGGAATATGG+TGG + tig0005557:40905-40924 Msa1342400:exon 40.0%
TTGTGAGAGAGGAATATGGT+GGG + tig0005557:40906-40925 Msa1342400:exon 40.0%
GTGGGAGCAATATCTGTTAT+TGG + tig0005557:40924-40943 Msa1342400:CDS 40.0%
!!! GTTGTGGAGATGTTGTTTTG+TGG + tig0005557:41027-41046 Msa1342400:CDS 40.0%
!! AAGAAGCATTTGGAAAAGCG+CGG + tig0005557:41065-41084 Msa1342400:CDS 40.0%
! GTTCTTTTACTGATCCTGGA+AGG + tig0005557:41114-41133 Msa1342400:CDS 40.0%
AGAAGCAACGCAGTAATGAT+AGG + tig0005557:41168-41187 Msa1342400:CDS 40.0%
GTTACCATTGTTAGTGAGCT+TGG + tig0005557:41194-41213 Msa1342400:CDS 40.0%
GCTCAACTATTTCACGTACA+AGG + tig0005557:42000-42019 Msa1342400:CDS 40.0%
TGAACCCACCTAAATATACG+TGG + tig0005557:42056-42075 Msa1342400:CDS 40.0%
TCCTAATCCCTTTCGTCTTA+AGG + tig0005557:42205-42224 Msa1342400:intron 40.0%
CCTAATCCCTTTCGTCTTAA+GGG + tig0005557:42206-42225 Msa1342400:intron 40.0%
GGAAAACCCTTAAGACGAAA+GGG - tig0005557:42215-42234 None:intergenic 40.0%
TGGAAAACCCTTAAGACGAA+AGG - tig0005557:42216-42235 None:intergenic 40.0%
CCTGCTCTATAAGAACAAGA+AGG - tig0005557:42467-42486 None:intergenic 40.0%
CCTTCTTGTTCTTATAGAGC+AGG + tig0005557:42464-42483 Msa1342400:intron 40.0%
!! ATTGCCGTTTGTCTAGGTTT+TGG - tig0005557:43044-43063 None:intergenic 40.0%
! AAAAGGATTGCCGTTTGTCT+AGG - tig0005557:43050-43069 None:intergenic 40.0%
GTTGAACAAAAAGAGGGGAA+TGG + tig0005557:43105-43124 Msa1342400:intron 40.0%
TAGCTTACTTGGTTGAGCTA+AGG + tig0005557:43129-43148 Msa1342400:intron 40.0%
AGCTTACTTGGTTGAGCTAA+GGG + tig0005557:43130-43149 Msa1342400:intron 40.0%
CAAATCGACTGAGATATACC+AGG - tig0005557:43394-43413 None:intergenic 40.0%
! TTTTATCCGATTGCTTGGGA+AGG + tig0005557:43609-43628 Msa1342400:CDS 40.0%
TGCATCTGATTAACTCGAGT+CGG + tig0005557:43788-43807 Msa1342400:intron 40.0%
! CTGAAAGAGTGATGTTGACT+CGG + tig0005557:43991-44010 Msa1342400:CDS 40.0%
CCTTGACCCATTTAGCATAA+AGG - tig0005557:44022-44041 None:intergenic 40.0%
CCTTTATGCTAAATGGGTCA+AGG + tig0005557:44019-44038 Msa1342400:CDS 40.0%
TGCTAAATGGGTCAAGGTAA+TGG + tig0005557:44025-44044 Msa1342400:intron 40.0%
GACTCATGGAGACAGTAATA+TGG + tig0005557:44203-44222 Msa1342400:CDS 40.0%
GACAGCAGCTCAGAATTAAT+TGG + tig0005557:44235-44254 Msa1342400:CDS 40.0%
GAGGTCCAAAATTGTCCAAC+AGG - tig0005557:40560-40579 None:intergenic 45.0%
! CGGATGCAGAGTTTGTTTGA+AGG - tig0005557:40698-40717 None:intergenic 45.0%
!! TCAATGATGGACTCACACAC+AGG + tig0005557:40951-40970 Msa1342400:CDS 45.0%
AGTGCATCCACACACAAACA+TGG - tig0005557:40978-40997 None:intergenic 45.0%
TTACTGATCCTGGAAGGGAA+TGG + tig0005557:41120-41139 Msa1342400:CDS 45.0%
ACCATTGTTAGTGAGCTTGG+TGG + tig0005557:41197-41216 Msa1342400:CDS 45.0%
ACCACCAAGCTCACTAACAA+TGG - tig0005557:41201-41220 None:intergenic 45.0%
! TGAGCTTGGTGGTCAATATG+AGG + tig0005557:41208-41227 Msa1342400:CDS 45.0%
ATTTCACGTACAAGGCTGTG+AGG + tig0005557:42008-42027 Msa1342400:CDS 45.0%
! GACGCATGGTAAGTGTGTTT+TGG + tig0005557:42154-42173 Msa1342400:intron 45.0%
CCCTTAAGACGAAAGGGATT+AGG - tig0005557:42209-42228 None:intergenic 45.0%
TGCGATCGAGCGATATCAAA+TGG - tig0005557:42310-42329 None:intergenic 45.0%
TTGTCCGGCAAGTGTTTGAA+CGG - tig0005557:42422-42441 None:intergenic 45.0%
GCAGTTGGGTCAAACAACAT+TGG - tig0005557:42590-42609 None:intergenic 45.0%
GCTTACTTGGTTGAGCTAAG+GGG + tig0005557:43131-43150 Msa1342400:intron 45.0%
! AGAGTACCTTCCCAAGCAAT+CGG - tig0005557:43618-43637 None:intergenic 45.0%
TCAGAATCGAGTCTTGCGAA+TGG - tig0005557:43864-43883 None:intergenic 45.0%
! GAAGCAGTTTGAAGGGTGCA+AGG - tig0005557:40658-40677 None:intergenic 50.0%
CACAGGTCCATGTTTGTGTG+TGG + tig0005557:40968-40987 Msa1342400:CDS 50.0%
! AAGCATTTGGAAAAGCGCGG+CGG + tig0005557:41068-41087 Msa1342400:CDS 50.0%
TTGACTCTCCATTCCCTTCC+AGG - tig0005557:41131-41150 None:intergenic 50.0%
GTCTCCGTTCAAACACTTGC+CGG + tig0005557:42415-42434 Msa1342400:intron 50.0%
AGGGGAATGGGTAGCTTACT+TGG + tig0005557:43118-43137 Msa1342400:intron 50.0%
! GTTGATGAGGGAACGACTCA+TGG + tig0005557:44189-44208 Msa1342400:CDS 50.0%
TCTGAGCTGCTGTCATCTGA+GGG - tig0005557:44229-44248 None:intergenic 50.0%
TTCTGAGCTGCTGTCATCTG+AGG - tig0005557:44230-44249 None:intergenic 50.0%
! CATTTGGAAAAGCGCGGCGG+CGG + tig0005557:41071-41090 Msa1342400:CDS 60.0%
CGCGGCGGCGGAAGAACTAT+GGG + tig0005557:41083-41102 Msa1342400:CDS 65.0%
GCGGCGGCGGAAGAACTATG+GGG + tig0005557:41084-41103 Msa1342400:CDS 65.0%
GCGCGGCGGCGGAAGAACTA+TGG + tig0005557:41082-41101 Msa1342400:CDS 70.0%
Chromosome Type Strat End Strand Name
tig0005557 gene 40528 44517 40528 ID=Msa1342400;Name=Msa1342400
tig0005557 mRNA 40528 44517 40528 ID=Msa1342400-mRNA-1;Parent=Msa1342400;Name=Msa1342400-mRNA-1;_AED=0.03;_eAED=0.03;_QI=393|1|1|1|1|1|5|256|223
tig0005557 exon 40528 41253 40528 ID=Msa1342400-mRNA-1:exon:3584;Parent=Msa1342400-mRNA-1
tig0005557 exon 41995 42086 41995 ID=Msa1342400-mRNA-1:exon:3585;Parent=Msa1342400-mRNA-1
tig0005557 exon 43573 43630 43573 ID=Msa1342400-mRNA-1:exon:3586;Parent=Msa1342400-mRNA-1
tig0005557 exon 43975 44040 43975 ID=Msa1342400-mRNA-1:exon:3587;Parent=Msa1342400-mRNA-1
tig0005557 exon 44139 44517 44139 ID=Msa1342400-mRNA-1:exon:3588;Parent=Msa1342400-mRNA-1
tig0005557 five_prime_UTR 40528 40920 40528 ID=Msa1342400-mRNA-1:five_prime_utr;Parent=Msa1342400-mRNA-1
tig0005557 CDS 40921 41253 40921 ID=Msa1342400-mRNA-1:cds;Parent=Msa1342400-mRNA-1
tig0005557 CDS 41995 42086 41995 ID=Msa1342400-mRNA-1:cds;Parent=Msa1342400-mRNA-1
tig0005557 CDS 43573 43630 43573 ID=Msa1342400-mRNA-1:cds;Parent=Msa1342400-mRNA-1
tig0005557 CDS 43975 44040 43975 ID=Msa1342400-mRNA-1:cds;Parent=Msa1342400-mRNA-1
tig0005557 CDS 44139 44261 44139 ID=Msa1342400-mRNA-1:cds;Parent=Msa1342400-mRNA-1
tig0005557 three_prime_UTR 44262 44517 44262 ID=Msa1342400-mRNA-1:three_prime_utr;Parent=Msa1342400-mRNA-1
Gene Sequence

>Msa1342400

ATGGTGGGAGCAATATCTGTTATTGGTTCATCAATGATGGACTCACACACAGGTCCATGTTTGTGTGTGGATGCACTTCCAACAACTAATATGAATCTCAAGATTGGTTGTGGAGATGTTGTTTTGTGGAAGAATTTGATGGGAAAGAAGCATTTGGAAAAGCGCGGCGGCGGAAGAACTATGGGGTTGAGTAGTTCTTTTACTGATCCTGGAAGGGAATGGAGAGTCAAGTTTAGCAGAAGCTGTAAGAAGCAACGCAGTAATGATAGGAGAGTTACCATTGTTAGTGAGCTTGGTGGTCAATATGAGGACACTTTTGAGGATGTTAAAACGCAAATGCTCAACTATTTCACGTACAAGGCTGTGAGGACTGTTATGCAGCAGCTGTATGAGATGAACCCACCTAAATATACGTGGTTTTATAATTTTGTTGTATCAAACAAACCACAAGATGGAAAACGTTTTATCCGATTGCTTGGGAAGGAACAACAAGAGCTTGCTGAAAGAGTGATGTTGACTCGGCTTAACCTTTATGCTAAATGGGTCAAGAAATGTAATCATGCTGAGATATATAATCAAATATCAGATGAAAACTTGGAGTTGATGAGGGAACGACTCATGGAGACAGTAATATGGCCCTCAGATGACAGCAGCTCAGAATTAATTGGCTGA

Protein sequence

>Msa1342400

MVGAISVIGSSMMDSHTGPCLCVDALPTTNMNLKIGCGDVVLWKNLMGKKHLEKRGGGRTMGLSSSFTDPGREWRVKFSRSCKKQRSNDRRVTIVSELGGQYEDTFEDVKTQMLNYFTYKAVRTVMQQLYEMNPPKYTWFYNFVVSNKPQDGKRFIRLLGKEQQELAERVMLTRLNLYAKWVKKCNHAEIYNQISDENLELMRERLMETVIWPSDDSSSELIG*