Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0731740 | XP_003615112.1 | 99.834 | 602 | 1 | 0 | 1 | 602 | 1 | 602 | 0.0 | 1242 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0731740 | sp|Q43125|CRY1_ARATH | 82.939 | 592 | 92 | 5 | 10 | 596 | 15 | 602 | 0.0 | 977 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0731740 | A2Q6E2 | 99.834 | 602 | 1 | 0 | 1 | 602 | 1 | 602 | 0.0 | 1242 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0030030 | Msa0731740 | 0.809374 | 1.952613e-50 | -8.615850e-47 |
| Msa0039200 | Msa0731740 | 0.822512 | 2.276764e-53 | -8.615850e-47 |
| Msa0046670 | Msa0731740 | 0.832531 | 8.962896e-56 | -8.615850e-47 |
| Msa0049670 | Msa0731740 | 0.802702 | 4.948469e-49 | -8.615850e-47 |
| Msa0056220 | Msa0731740 | 0.805541 | 1.270195e-49 | -8.615850e-47 |
| Msa0077330 | Msa0731740 | 0.811011 | 8.666526e-51 | -8.615850e-47 |
| Msa0083200 | Msa0731740 | 0.807312 | 5.375561e-50 | -8.615850e-47 |
| Msa0086820 | Msa0731740 | 0.826021 | 3.409691e-54 | -8.615850e-47 |
| Msa0087880 | Msa0731740 | 0.808162 | 3.545760e-50 | -8.615850e-47 |
| Msa0604640 | Msa0731740 | 0.816343 | 5.806014e-52 | -8.615850e-47 |
| Msa0625550 | Msa0731740 | 0.803477 | 3.421932e-49 | -8.615850e-47 |
| Msa0662850 | Msa0731740 | 0.815386 | 9.495423e-52 | -8.615850e-47 |
| Msa0673990 | Msa0731740 | 0.811365 | 7.261761e-51 | -8.615850e-47 |
| Msa0687320 | Msa0731740 | 0.807340 | 5.303352e-50 | -8.615850e-47 |
| Msa0713530 | Msa0731740 | 0.826396 | 2.776497e-54 | -8.615850e-47 |
| Msa0724490 | Msa0731740 | 0.804463 | 2.133996e-49 | -8.615850e-47 |
| Msa0729590 | Msa0731740 | 0.828121 | 1.072221e-54 | -8.615850e-47 |
| Msa0729780 | Msa0731740 | 0.811794 | 5.856926e-51 | -8.615850e-47 |
| Msa0731740 | Msa0733570 | 0.865446 | 5.871400e-65 | -8.615850e-47 |
| Msa0731740 | Msa0736930 | 0.852172 | 5.496826e-61 | -8.615850e-47 |
| Msa0731740 | Msa0739570 | 0.808306 | 3.304990e-50 | -8.615850e-47 |
| Msa0731740 | Msa0751000 | 0.871457 | 6.734700e-67 | -8.615850e-47 |
| Msa0731740 | Msa0755590 | 0.816358 | 5.763766e-52 | -8.615850e-47 |
| Msa0731740 | Msa0766880 | 0.815754 | 7.863311e-52 | -8.615850e-47 |
| Msa0731740 | Msa0770020 | 0.807564 | 4.753237e-50 | -8.615850e-47 |
| Msa0731740 | Msa0771960 | 0.892551 | 1.430639e-74 | -8.615850e-47 |
| Msa0731740 | Msa0772040 | 0.876857 | 1.000476e-68 | -8.615850e-47 |
| Msa0731740 | Msa0774680 | 0.861451 | 1.016655e-63 | -8.615850e-47 |
| Msa0731740 | Msa0794040 | 0.883257 | 5.229883e-71 | -8.615850e-47 |
| Msa0731740 | Msa0797240 | 0.833598 | 4.863601e-56 | -8.615850e-47 |
| Msa0731740 | Msa0800400 | 0.820597 | 6.304719e-53 | -8.615850e-47 |
| Msa0731740 | Msa0812230 | 0.857923 | 1.172158e-62 | -8.615850e-47 |
| Msa0731740 | Msa0835010 | 0.812184 | 4.817501e-51 | -8.615850e-47 |
| Msa0731740 | Msa0839730 | 0.800999 | 1.107154e-48 | -8.615850e-47 |
| Msa0731740 | Msa0848780 | 0.805481 | 1.307512e-49 | -8.615850e-47 |
| Msa0731740 | Msa0850520 | 0.969529 | 2.952706e-130 | -8.615850e-47 |
| Msa0731740 | Msa0852500 | 0.811361 | 7.275229e-51 | -8.615850e-47 |
| Msa0731740 | Msa0860270 | 0.802099 | 6.588796e-49 | -8.615850e-47 |
| Msa0731740 | Msa0861480 | 0.800238 | 1.583217e-48 | -8.615850e-47 |
| Msa0731740 | Msa0861560 | 0.810186 | 1.306375e-50 | -8.615850e-47 |
| Msa0731740 | Msa0866960 | 0.806201 | 9.228043e-50 | -8.615850e-47 |
| Msa0731740 | Msa0883690 | 0.806578 | 7.683512e-50 | -8.615850e-47 |
| Msa0731740 | Msa0897390 | 0.800783 | 1.225734e-48 | -8.615850e-47 |
| Msa0731740 | Msa0923910 | 0.812124 | 4.963418e-51 | -8.615850e-47 |
| Msa0731740 | Msa0978000 | 0.802139 | 6.465833e-49 | -8.615850e-47 |
| Msa0731740 | Msa0981300 | 0.823468 | 1.362748e-53 | -8.615850e-47 |
| Msa0731740 | Msa0981900 | 0.824265 | 8.861940e-54 | -8.615850e-47 |
| Msa0731740 | Msa1016130 | 0.855437 | 6.312877e-62 | -8.615850e-47 |
| Msa0731740 | Msa1020500 | 0.803656 | 3.141340e-49 | -8.615850e-47 |
| Msa0731740 | Msa1031220 | 0.812796 | 3.539622e-51 | -8.615850e-47 |
| Msa0731740 | Msa1033230 | 0.811204 | 7.870875e-51 | -8.615850e-47 |
| Msa0731740 | Msa1041550 | 0.862044 | 6.694939e-64 | -8.615850e-47 |
| Msa0731740 | Msa1049440 | 0.839094 | 1.946079e-57 | -8.615850e-47 |
| Msa0731740 | Msa1071310 | 0.832572 | 8.759009e-56 | -8.615850e-47 |
| Msa0731740 | Msa1071460 | 0.830311 | 3.154590e-55 | -8.615850e-47 |
| Msa0731740 | Msa1081530 | 0.845428 | 4.086761e-59 | -8.615850e-47 |
| Msa0731740 | Msa1098070 | 0.827037 | 1.951464e-54 | -8.615850e-47 |
| Msa0731740 | Msa1102180 | 0.802115 | 6.538253e-49 | -8.615850e-47 |
| Msa0731740 | Msa1122480 | 0.804695 | 1.909275e-49 | -8.615850e-47 |
| Msa0731740 | Msa1123340 | 0.811319 | 7.430098e-51 | -8.615850e-47 |
| Msa0731740 | Msa1124440 | 0.824173 | 9.316967e-54 | -8.615850e-47 |
| Msa0731740 | Msa1132320 | 0.874151 | 8.450236e-68 | -8.615850e-47 |
| Msa0731740 | Msa1166450 | 0.860862 | 1.536493e-63 | -8.615850e-47 |
| Msa0731740 | Msa1173410 | 0.802139 | 6.463417e-49 | -8.615850e-47 |
| Msa0731740 | Msa1175970 | 0.805025 | 1.629224e-49 | -8.615850e-47 |
| Msa0731740 | Msa1179680 | 0.825158 | 5.458575e-54 | -8.615850e-47 |
| Msa0731740 | Msa1182960 | 0.814856 | 1.244739e-51 | -8.615850e-47 |
| Msa0731740 | Msa1182990 | 0.802947 | 4.405685e-49 | -8.615850e-47 |
| Msa0731740 | Msa1188380 | 0.815832 | 7.554726e-52 | -8.615850e-47 |
| Msa0731740 | Msa1203090 | 0.839030 | 2.021650e-57 | -8.615850e-47 |
| Msa0731740 | Msa1215660 | 0.809137 | 2.195505e-50 | -8.615850e-47 |
| Msa0731740 | Msa1216700 | 0.817650 | 2.954759e-52 | -8.615850e-47 |
| Msa0731740 | Msa1216900 | 0.813009 | 3.179229e-51 | -8.615850e-47 |
| Msa0731740 | Msa1221370 | 0.886373 | 3.618897e-72 | -8.615850e-47 |
| Msa0731740 | Msa1223510 | 0.809553 | 1.787339e-50 | -8.615850e-47 |
| Msa0731740 | Msa1224690 | 0.829250 | 5.716835e-55 | -8.615850e-47 |
| Msa0731740 | Msa1232640 | 0.844982 | 5.393571e-59 | -8.615850e-47 |
| Msa0731740 | Msa1233760 | 0.809433 | 1.897007e-50 | -8.615850e-47 |
| Msa0731740 | Msa1235030 | 0.818308 | 2.097679e-52 | -8.615850e-47 |
| Msa0731740 | Msa1235050 | 0.806198 | 9.241375e-50 | -8.615850e-47 |
| Msa0731740 | Msa1252040 | 0.805310 | 1.419887e-49 | -8.615850e-47 |
| Msa0731740 | Msa1262740 | 0.832557 | 8.829891e-56 | -8.615850e-47 |
| Msa0731740 | Msa1264230 | 0.816519 | 5.302741e-52 | -8.615850e-47 |
| Msa0731740 | Msa1265250 | 0.845558 | 3.767970e-59 | -8.615850e-47 |
| Msa0731740 | Msa1266570 | 0.815435 | 9.256867e-52 | -8.615850e-47 |
| Msa0731740 | Msa1266650 | 0.810806 | 9.599281e-51 | -8.615850e-47 |
| Msa0731740 | Msa1272130 | 0.816375 | 5.712595e-52 | -8.615850e-47 |
| Msa0731740 | Msa1276070 | 0.806020 | 1.007584e-49 | -8.615850e-47 |
| Msa0731740 | Msa1289340 | 0.811145 | 8.103096e-51 | -8.615850e-47 |
| Msa0731740 | Msa1294520 | 0.807410 | 5.124449e-50 | -8.615850e-47 |
| Msa0731740 | Msa1302920 | 0.822310 | 2.536871e-53 | -8.615850e-47 |
| Msa0731740 | Msa1309910 | 0.816536 | 5.257849e-52 | -8.615850e-47 |
| Msa0731740 | Msa1310260 | 0.802293 | 6.009298e-49 | -8.615850e-47 |
| Msa0731740 | Msa1313230 | 0.807880 | 4.072200e-50 | -8.615850e-47 |
| Msa0731740 | Msa1316160 | 0.856235 | 3.688729e-62 | -8.615850e-47 |
| Msa0731740 | Msa1329660 | 0.814455 | 1.527052e-51 | -8.615850e-47 |
| Msa0731740 | Msa1333320 | 0.803420 | 3.515746e-49 | -8.615850e-47 |
| Msa0731740 | Msa1336350 | 0.820735 | 5.861575e-53 | -8.615850e-47 |
| Msa0731740 | Msa1337520 | 0.879734 | 9.779716e-70 | -8.615850e-47 |
| Msa0731740 | Msa1344610 | 0.818534 | 1.864670e-52 | -8.615850e-47 |
| Msa0731740 | Msa1346540 | 0.810267 | 1.255125e-50 | -8.615850e-47 |
| Msa0731740 | Msa1350030 | 0.800712 | 1.267052e-48 | -8.615850e-47 |
| Msa0731740 | Msa1351560 | 0.804718 | 1.888542e-49 | -8.615850e-47 |
| Msa0731740 | Msa1357720 | 0.852569 | 4.236347e-61 | -8.615850e-47 |
| Msa0731740 | Msa1361500 | -0.810306 | 1.231037e-50 | -8.615850e-47 |
| Msa0731740 | Msa1373590 | 0.827742 | 1.322787e-54 | -8.615850e-47 |
| Msa0731740 | Msa1374210 | 0.810044 | 1.401959e-50 | -8.615850e-47 |
| Msa0731740 | Msa1381720 | 0.822913 | 1.836797e-53 | -8.615850e-47 |
| Msa0731740 | Msa1385940 | 0.831598 | 1.524459e-55 | -8.615850e-47 |
| Msa0731740 | Msa1393600 | 0.854214 | 1.428327e-61 | -8.615850e-47 |
| Msa0731740 | Msa1400600 | 0.815816 | 7.615043e-52 | -8.615850e-47 |
| Msa0731740 | Msa1407200 | 0.800037 | 1.738861e-48 | -8.615850e-47 |
| Msa0731740 | Msa1409050 | 0.823330 | 1.468236e-53 | -8.615850e-47 |
| Msa0731740 | Msa1409760 | 0.808636 | 2.810398e-50 | -8.615850e-47 |
| Msa0731740 | Msa1413220 | 0.807788 | 4.259672e-50 | -8.615850e-47 |
| Msa0731740 | Msa1415120 | 0.830410 | 2.982803e-55 | -8.615850e-47 |
| Msa0731740 | Msa1419040 | 0.802687 | 4.984133e-49 | -8.615850e-47 |
| Msa0731740 | Msa1422750 | 0.813062 | 3.094747e-51 | -8.615850e-47 |
| Msa0731740 | Msa1425630 | 0.833011 | 6.812263e-56 | -8.615850e-47 |
| Msa0731740 | Msa1433060 | 0.800489 | 1.406853e-48 | -8.615850e-47 |
| Msa0731740 | Msa1438420 | 0.802753 | 4.831401e-49 | -8.615850e-47 |
| Msa0731740 | Msa1439160 | 0.803063 | 4.167521e-49 | -8.615850e-47 |
| Msa0731740 | Msa1452200 | 0.818190 | 2.230897e-52 | -8.615850e-47 |
| Msa0130120 | Msa0731740 | 0.806739 | 7.106930e-50 | -8.615850e-47 |
| Msa0133670 | Msa0731740 | 0.823579 | 1.283805e-53 | -8.615850e-47 |
| Msa0133880 | Msa0731740 | 0.821370 | 4.185235e-53 | -8.615850e-47 |
| Msa0134550 | Msa0731740 | 0.803672 | 3.118101e-49 | -8.615850e-47 |
| Msa0137810 | Msa0731740 | 0.820151 | 7.981677e-53 | -8.615850e-47 |
| Msa0148590 | Msa0731740 | 0.803060 | 4.174277e-49 | -8.615850e-47 |
| Msa0152610 | Msa0731740 | 0.800736 | 1.253198e-48 | -8.615850e-47 |
| Msa0169960 | Msa0731740 | 0.812319 | 4.500368e-51 | -8.615850e-47 |
| Msa0175480 | Msa0731740 | 0.833351 | 5.605571e-56 | -8.615850e-47 |
| Msa0184120 | Msa0731740 | 0.819594 | 1.069886e-52 | -8.615850e-47 |
| Msa0207530 | Msa0731740 | 0.823884 | 1.089191e-53 | -8.615850e-47 |
| Msa0207900 | Msa0731740 | 0.820971 | 5.174158e-53 | -8.615850e-47 |
| Msa0216010 | Msa0731740 | 0.846938 | 1.585886e-59 | -8.615850e-47 |
| Msa0218480 | Msa0731740 | 0.847447 | 1.150179e-59 | -8.615850e-47 |
| Msa0218590 | Msa0731740 | 0.846154 | 2.595071e-59 | -8.615850e-47 |
| Msa0222510 | Msa0731740 | 0.851319 | 9.592230e-61 | -8.615850e-47 |
| Msa0222720 | Msa0731740 | 0.822218 | 2.664305e-53 | -8.615850e-47 |
| Msa0228360 | Msa0731740 | 0.808904 | 2.462740e-50 | -8.615850e-47 |
| Msa0369750 | Msa0731740 | 0.828025 | 1.130439e-54 | -8.615850e-47 |
| Msa0370510 | Msa0731740 | 0.804807 | 1.809535e-49 | -8.615850e-47 |
| Msa0377460 | Msa0731740 | 0.825899 | 3.644484e-54 | -8.615850e-47 |
| Msa0381370 | Msa0731740 | 0.831754 | 1.395010e-55 | -8.615850e-47 |
| Msa0384330 | Msa0731740 | 0.801634 | 8.206832e-49 | -8.615850e-47 |
| Msa0390950 | Msa0731740 | 0.823767 | 1.160257e-53 | -8.615850e-47 |
| Msa0404180 | Msa0731740 | 0.808554 | 2.926106e-50 | -8.615850e-47 |
| Msa0404870 | Msa0731740 | 0.803614 | 3.204317e-49 | -8.615850e-47 |
| Msa0416990 | Msa0731740 | 0.814069 | 1.858734e-51 | -8.615850e-47 |
| Msa0417130 | Msa0731740 | 0.812379 | 4.367835e-51 | -8.615850e-47 |
| Msa0422520 | Msa0731740 | 0.830513 | 2.815898e-55 | -8.615850e-47 |
| Msa0426990 | Msa0731740 | 0.836399 | 9.573572e-57 | -8.615850e-47 |
| Msa0456480 | Msa0731740 | 0.806151 | 9.454359e-50 | -8.615850e-47 |
| Msa0463580 | Msa0731740 | 0.832821 | 7.595592e-56 | -8.615850e-47 |
| Msa0463960 | Msa0731740 | 0.849781 | 2.593628e-60 | -8.615850e-47 |
| Msa0473320 | Msa0731740 | 0.838346 | 3.036832e-57 | -8.615850e-47 |
| Msa0473450 | Msa0731740 | 0.839630 | 1.412908e-57 | -8.615850e-47 |
| Msa0475360 | Msa0731740 | 0.830262 | 3.243356e-55 | -8.615850e-47 |
| Msa0476730 | Msa0731740 | 0.803987 | 2.681533e-49 | -8.615850e-47 |
| Msa0477070 | Msa0731740 | 0.800217 | 1.598235e-48 | -8.615850e-47 |
| Msa0482580 | Msa0731740 | 0.802240 | 6.162882e-49 | -8.615850e-47 |
| Msa0256170 | Msa0731740 | 0.838349 | 3.032295e-57 | -8.615850e-47 |
| Msa0258280 | Msa0731740 | 0.807859 | 4.115116e-50 | -8.615850e-47 |
| Msa0264020 | Msa0731740 | 0.826890 | 2.116753e-54 | -8.615850e-47 |
| Msa0270610 | Msa0731740 | 0.813880 | 2.045922e-51 | -8.615850e-47 |
| Msa0270640 | Msa0731740 | 0.815115 | 1.090352e-51 | -8.615850e-47 |
| Msa0298590 | Msa0731740 | 0.808859 | 2.517950e-50 | -8.615850e-47 |
| Msa0301800 | Msa0731740 | 0.842559 | 2.401502e-58 | -8.615850e-47 |
| Msa0302020 | Msa0731740 | 0.814135 | 1.797221e-51 | -8.615850e-47 |
| Msa0305580 | Msa0731740 | 0.825928 | 3.587208e-54 | -8.615850e-47 |
| Msa0306130 | Msa0731740 | 0.807368 | 5.231467e-50 | -8.615850e-47 |
| Msa0339340 | Msa0731740 | 0.809142 | 2.189441e-50 | -8.615850e-47 |
| Msa0339560 | Msa0731740 | 0.803732 | 3.029648e-49 | -8.615850e-47 |
| Msa0358710 | Msa0731740 | 0.800208 | 1.605445e-48 | -8.615850e-47 |
| Msa0509500 | Msa0731740 | 0.827515 | 1.499060e-54 | -8.615850e-47 |
| Msa0509510 | Msa0731740 | 0.812191 | 4.799367e-51 | -8.615850e-47 |
| Msa0512770 | Msa0731740 | 0.800468 | 1.420803e-48 | -8.615850e-47 |
| Msa0517400 | Msa0731740 | 0.829656 | 4.556379e-55 | -8.615850e-47 |
| Msa0521100 | Msa0731740 | 0.827844 | 1.250167e-54 | -8.615850e-47 |
| Msa0539660 | Msa0731740 | 0.810385 | 1.183433e-50 | -8.615850e-47 |
| Msa0568490 | Msa0731740 | 0.818204 | 2.214853e-52 | -8.615850e-47 |
| Msa0577960 | Msa0731740 | 0.803688 | 3.093038e-49 | -8.615850e-47 |
| Msa0581440 | Msa0731740 | 0.891921 | 2.553468e-74 | -8.615850e-47 |
| Msa0595240 | Msa0731740 | 0.803010 | 4.273812e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0731740 | MtrunA17_Chr5g0426121 | 99.834 | 602 | 1 | 0 | 1 | 602 | 1 | 602 | 0.0 | 1242 |
| Msa0731740 | MtrunA17_Chr1g0187801 | 58.875 | 569 | 213 | 5 | 9 | 567 | 6 | 563 | 0.0 | 707 |
| Msa0731740 | MtrunA17_Chr1g0167721 | 59.016 | 549 | 208 | 5 | 9 | 553 | 4 | 539 | 0.0 | 680 |
| Msa0731740 | MtrunA17_Chr4g0003821 | 26.367 | 512 | 343 | 13 | 2 | 492 | 8 | 506 | 2.71e-44 | 166 |
| Msa0731740 | MtrunA17_Chr3g0138841 | 41.538 | 130 | 75 | 1 | 319 | 448 | 426 | 554 | 1.45e-21 | 99.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0731740 | AT4G08920.1 | 82.939 | 592 | 92 | 5 | 10 | 596 | 15 | 602 | 0.0 | 977 |
| Msa0731740 | AT1G04400.1 | 55.155 | 582 | 229 | 6 | 9 | 578 | 7 | 568 | 0.0 | 658 |
| Msa0731740 | AT1G04400.2 | 55.155 | 582 | 229 | 6 | 9 | 578 | 7 | 568 | 0.0 | 658 |
| Msa0731740 | AT3G15620.1 | 28.648 | 562 | 345 | 22 | 2 | 534 | 19 | 553 | 2.92e-45 | 169 |
| Msa0731740 | AT5G24850.1 | 28.721 | 477 | 281 | 19 | 1 | 446 | 78 | 526 | 2.28e-26 | 114 |
| Msa0731740 | AT3G15620.2 | 27.336 | 428 | 268 | 18 | 2 | 401 | 19 | 431 | 2.00e-25 | 110 |
Find 160 sgRNAs with CRISPR-Local
Find 295 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATTGTATTTCATCTCTTTA+TGG | 0.077078 | 5_1:-43183500 | Msa0731740:five_prime_UTR |
| TTTCCAAGAAATTCTAAATT+TGG | 0.159131 | 5_1:+43183591 | None:intergenic |
| CAACCAAATTTAGAATTTCT+TGG | 0.207684 | 5_1:-43183594 | Msa0731740:five_prime_UTR |
| CTCTCTCCACATCTGCATTT+CGG | 0.260934 | 5_1:-43180864 | Msa0731740:CDS |
| TAATATTGTCCTTCTTCTTC+AGG | 0.276429 | 5_1:+43183284 | None:intergenic |
| TCAATATAGAAAACAAATAA+AGG | 0.277400 | 5_1:-43183464 | Msa0731740:five_prime_UTR |
| TCCGAATCAAACAAGTCTTT+TGG | 0.278556 | 5_1:-43180809 | Msa0731740:CDS |
| ATCTTCTTCAACCATTTATA+TGG | 0.287219 | 5_1:-43183110 | Msa0731740:intron |
| AGAGGCCTTTCATGACTATA+AGG | 0.302746 | 5_1:+43180690 | None:intergenic |
| TCTCTTGCATTTGCATTTGT+TGG | 0.309488 | 5_1:+43179364 | None:intergenic |
| GATTCATCTTTGAGAAATCT+TGG | 0.332736 | 5_1:-43183212 | Msa0731740:CDS |
| CAAAACCTTGACAAAGAAAC+TGG | 0.347403 | 5_1:+43180515 | None:intergenic |
| TGGGACGTGAACGATGAAAA+TGG | 0.354759 | 5_1:-43182310 | Msa0731740:CDS |
| GCATTAACAACCTTCATAAA+TGG | 0.355313 | 5_1:-43180945 | Msa0731740:CDS |
| CCACCTAAAAGAATTATTCC+AGG | 0.356435 | 5_1:-43182211 | Msa0731740:intron |
| AGGAAAGACATGAACCTATT+AGG | 0.369574 | 5_1:-43179519 | Msa0731740:CDS |
| CTTGGTTGGCAGTATATATC+TGG | 0.369739 | 5_1:-43180420 | Msa0731740:CDS |
| TGAGGTGCATTGTTCCTAAT+AGG | 0.377118 | 5_1:+43179505 | None:intergenic |
| CCCAAAAGACTTGTTTGATT+CGG | 0.377722 | 5_1:+43180808 | None:intergenic |
| TGATAGTGTTTCTTCTTTGT+TGG | 0.377799 | 5_1:-43183162 | Msa0731740:CDS |
| TGAGTCTCCAAGACCTTCTT+CGG | 0.384773 | 5_1:+43179585 | None:intergenic |
| CGTCGCACATATTCTCCATT+TGG | 0.388502 | 5_1:+43179820 | None:intergenic |
| GTTGGTAATCTTGCAAGTTC+AGG | 0.388626 | 5_1:+43179790 | None:intergenic |
| GCTGCATCTATTTCCACAAT+TGG | 0.397781 | 5_1:+43179685 | None:intergenic |
| AACTTCTTCGGTTCGAAACT+CGG | 0.401899 | 5_1:-43179410 | Msa0731740:CDS |
| TTTGTTCTAATCTCTCTCCT+TGG | 0.409199 | 5_1:-43183674 | Msa0731740:five_prime_UTR |
| GCAGCTTGGAGTACTGATTC+TGG | 0.409884 | 5_1:+43179739 | None:intergenic |
| AACTTGTTTCTCAAGTCAAT+TGG | 0.410128 | 5_1:-43180750 | Msa0731740:CDS |
| CTAACACCTGCTGCTAGTGC+AGG | 0.412557 | 5_1:+43183341 | None:intergenic |
| ACCAAGGAGCGTTGCAGAAT+GGG | 0.420143 | 5_1:-43179333 | Msa0731740:CDS |
| TTTGCAGCTTCCTTGGAGAT+GGG | 0.421455 | 5_1:-43180496 | Msa0731740:CDS |
| CTTGCTCGAGCATGGTCACC+AGG | 0.422711 | 5_1:-43180987 | Msa0731740:CDS |
| TTGGAAGTTGTTAAATCCAC+TGG | 0.423134 | 5_1:-43183143 | Msa0731740:CDS |
| CGTTTCCAGTTTCTTTGTCA+AGG | 0.424584 | 5_1:-43180520 | Msa0731740:CDS |
| TTCCCTTGGGTGGTGAATGA+AGG | 0.433449 | 5_1:-43180648 | Msa0731740:CDS |
| TCCCATTCTGCAACGCTCCT+TGG | 0.434195 | 5_1:+43179332 | None:intergenic |
| AACGGAACCGAAGAAGGTCT+TGG | 0.439421 | 5_1:-43179592 | Msa0731740:CDS |
| AGCATCCACCAAAGGGTAAC+CGG | 0.442152 | 5_1:+43180596 | None:intergenic |
| GGTTACCCTTTGGTGGATGC+TGG | 0.446690 | 5_1:-43180594 | Msa0731740:CDS |
| CAAGCTGCTGGTATTGAACT+TGG | 0.454507 | 5_1:-43179724 | Msa0731740:CDS |
| AGGAAGGACCGGTTACCCTT+TGG | 0.454831 | 5_1:-43180604 | Msa0731740:CDS |
| AGAGGTGCTTGTGGGTCATA+AGG | 0.463043 | 5_1:+43182238 | None:intergenic |
| ATGGTGGCTTAAGAATAGTT+TGG | 0.473463 | 5_1:-43183243 | Msa0731740:CDS |
| CTGTCGAATTCACGACCATC+AGG | 0.474245 | 5_1:+43180390 | None:intergenic |
| ATGTCCTGAGGAAAAGCAAT+AGG | 0.475441 | 5_1:+43179550 | None:intergenic |
| CTTGTTTGATTCGGACAAGA+TGG | 0.475620 | 5_1:+43180817 | None:intergenic |
| TCTCAAGATCAGCATCCAAA+AGG | 0.479207 | 5_1:+43180451 | None:intergenic |
| GTGGTGGATGCAGTATAGTT+TGG | 0.481299 | 5_1:-43183394 | Msa0731740:CDS |
| CAATATAGAAAACAAATAAA+GGG | 0.488855 | 5_1:-43183463 | Msa0731740:five_prime_UTR |
| AGAAGAAGAAGAAACTTCTT+CGG | 0.489072 | 5_1:-43179422 | Msa0731740:CDS |
| TTAGAACAAATGACGAGGAT+TGG | 0.489841 | 5_1:+43183687 | None:intergenic |
| CAGAAGAGATCTGAGGGTAG+AGG | 0.494794 | 5_1:-43183369 | Msa0731740:CDS |
| TCAAGAGCTGCAGCAGAAAA+CGG | 0.494972 | 5_1:-43179610 | Msa0731740:CDS |
| CACCATCTTGAAACCCTACC+AGG | 0.495232 | 5_1:+43183260 | None:intergenic |
| TTGCAGCTTCCTTGGAGATG+GGG | 0.496860 | 5_1:-43180495 | Msa0731740:CDS |
| AGTCATGAAAGGCCTCTACT+TGG | 0.497704 | 5_1:-43180684 | Msa0731740:CDS |
| ATGAGAGAGTTGTGGGCTAC+TGG | 0.498793 | 5_1:-43180570 | Msa0731740:CDS |
| TCTTCGGTTCGAAACTCGGC+AGG | 0.500512 | 5_1:-43179406 | Msa0731740:CDS |
| AAGGACCGGTTACCCTTTGG+TGG | 0.502290 | 5_1:-43180601 | Msa0731740:CDS |
| CAAGTTAACACTTTCTTCGC+CGG | 0.502530 | 5_1:+43180767 | None:intergenic |
| GATCTTGAGAGCGATGCTCT+TGG | 0.503245 | 5_1:-43180438 | Msa0731740:CDS |
| GCAGAAAACGGAACCGAAGA+AGG | 0.508391 | 5_1:-43179598 | Msa0731740:CDS |
| TTGGTCTTAGAGAGTATTCA+AGG | 0.508724 | 5_1:-43180731 | Msa0731740:CDS |
| TGCTGGAATGAGAGAGTTGT+GGG | 0.509242 | 5_1:-43180577 | Msa0731740:CDS |
| AATCAAAAGTTGTGAATGGT+TGG | 0.510452 | 5_1:+43182287 | None:intergenic |
| TGCAGCTTCCTTGGAGATGG+GGG | 0.511485 | 5_1:-43180494 | Msa0731740:CDS |
| ACAATGCACCTCACGGTACT+CGG | 0.514485 | 5_1:-43179495 | Msa0731740:CDS |
| AAAGAATCAAAAGTTGTGAA+TGG | 0.514889 | 5_1:+43182283 | None:intergenic |
| CTAGCAGCAGGTGTTAGAGC+AGG | 0.515660 | 5_1:-43183335 | Msa0731740:CDS |
| TCGGCGCTACCAGGATCAAA+TGG | 0.518616 | 5_1:-43179476 | Msa0731740:CDS |
| CCATGGATGATGTATCCATT+CGG | 0.522322 | 5_1:+43179768 | None:intergenic |
| GAAGAAGGACAATATTATCC+TGG | 0.525684 | 5_1:-43183278 | Msa0731740:CDS |
| CTCATTCCAGCATCCACCAA+AGG | 0.525962 | 5_1:+43180588 | None:intergenic |
| GAGGCCTTTCATGACTATAA+GGG | 0.526163 | 5_1:+43180691 | None:intergenic |
| TCACGGTACTCGGCGCTACC+AGG | 0.527329 | 5_1:-43179485 | Msa0731740:CDS |
| AAAGTGTCCTTCTGATACAT+TGG | 0.527386 | 5_1:-43181048 | Msa0731740:CDS |
| TATCCTTCATTCACCACCCA+AGG | 0.528784 | 5_1:+43180645 | None:intergenic |
| GTGGGAGAAGAGGTGCTTGT+GGG | 0.530368 | 5_1:+43182230 | None:intergenic |
| CTGGTAGGGTTTCAAGATGG+TGG | 0.531385 | 5_1:-43183259 | Msa0731740:CDS |
| TCTATTTCCACAATTGGAAG+AGG | 0.531905 | 5_1:+43179691 | None:intergenic |
| GGATACAAGTGTGATCCAAA+TGG | 0.532024 | 5_1:-43179835 | Msa0731740:CDS |
| TACTTGGTACCATTTGATCC+TGG | 0.532087 | 5_1:+43179467 | None:intergenic |
| TTGAGAGCGATGCTCTTGGT+TGG | 0.534497 | 5_1:-43180434 | Msa0731740:CDS |
| AACCAAGGAGCGTTGCAGAA+TGG | 0.534665 | 5_1:-43179334 | Msa0731740:CDS |
| ATATGGGCACCTGAAGAAGA+AGG | 0.536975 | 5_1:-43183293 | Msa0731740:CDS |
| TTGGTTCAGAAGAGATCTGA+GGG | 0.536985 | 5_1:-43183375 | Msa0731740:CDS |
| AAACTACCCTCTTCCAATTG+TGG | 0.538617 | 5_1:-43179698 | Msa0731740:CDS |
| AAATAGTGACACTGAGACAA+AGG | 0.540667 | 5_1:+43183650 | None:intergenic |
| ACTGATTCTGGTGCATTCCA+TGG | 0.541816 | 5_1:+43179751 | None:intergenic |
| GATAACCCTGCACTAGCAGC+AGG | 0.542506 | 5_1:-43183347 | Msa0731740:CDS |
| AGATTTATTGTATGAACCAT+GGG | 0.542783 | 5_1:-43182329 | Msa0731740:CDS |
| AAGGAAATTCTAACCGCTCA+AGG | 0.545321 | 5_1:-43182376 | Msa0731740:CDS |
| CTACTGGTTGGCTACATGAT+CGG | 0.546843 | 5_1:-43180554 | Msa0731740:CDS |
| TCCTCCATTTGTATGTCCTG+AGG | 0.550035 | 5_1:+43179538 | None:intergenic |
| AAGGACAATATTATCCTGGT+AGG | 0.551662 | 5_1:-43183274 | Msa0731740:CDS |
| AGATCCATTGTCACTTGTGA+GGG | 0.553177 | 5_1:-43182410 | Msa0731740:CDS |
| CTCAAGATCAGCATCCAAAA+GGG | 0.553803 | 5_1:+43180452 | None:intergenic |
| ACTCTAGAAGAAGTCATACT+TGG | 0.554108 | 5_1:+43179451 | None:intergenic |
| AGGACAATATTATCCTGGTA+GGG | 0.555378 | 5_1:-43183273 | Msa0731740:CDS |
| CCGAATGGATACATCATCCA+TGG | 0.560349 | 5_1:-43179768 | Msa0731740:CDS |
| TCATTCCAGCATCCACCAAA+GGG | 0.560356 | 5_1:+43180589 | None:intergenic |
| GCATGGAGACAAGGAAGGAC+CGG | 0.561971 | 5_1:-43180615 | Msa0731740:CDS |
| GAAGATTTGAGTGGCTCCAG+TGG | 0.562621 | 5_1:+43183127 | None:intergenic |
| CAGATTTATTGTATGAACCA+TGG | 0.564037 | 5_1:-43182330 | Msa0731740:CDS |
| GGTGGGAGAAGAGGTGCTTG+TGG | 0.564135 | 5_1:+43182229 | None:intergenic |
| ACGCACTTCTTGCTCGAGCA+TGG | 0.564346 | 5_1:-43180995 | Msa0731740:CDS |
| GTTAGAGCAGGTGCTGTAGT+TGG | 0.566195 | 5_1:-43183323 | Msa0731740:CDS |
| TTGTTTGCGTTACTCCACCC+TGG | 0.566759 | 5_1:+43180969 | None:intergenic |
| TCCTCAGGACATACAAATGG+AGG | 0.573201 | 5_1:-43179539 | Msa0731740:CDS |
| GAATCAGTACTCCAAGCTGC+TGG | 0.576235 | 5_1:-43179736 | Msa0731740:CDS |
| TTCTTAGAGTACTCGATCAG+TGG | 0.580821 | 5_1:+43180921 | None:intergenic |
| GATCAGTGGACCATTTATGA+AGG | 0.583962 | 5_1:+43180935 | None:intergenic |
| TGGAGAGAGAAATGAGGTTG+TGG | 0.585202 | 5_1:+43180878 | None:intergenic |
| AACTTAAGGTGTCCAAGTAG+AGG | 0.586454 | 5_1:+43180672 | None:intergenic |
| AACAAATGCAAATGCAAGAG+AGG | 0.588191 | 5_1:-43179362 | Msa0731740:CDS |
| GTGGGTCATAAGGCATGCTA+AGG | 0.588329 | 5_1:+43182248 | None:intergenic |
| AAGATGTCATCAAGTGGTGG+TGG | 0.591044 | 5_1:-43183410 | Msa0731740:CDS |
| CAAGTTCAATACCAGCAGCT+TGG | 0.592599 | 5_1:+43179725 | None:intergenic |
| TCGAGTACTCTAAGAATCGA+AGG | 0.592996 | 5_1:-43180914 | Msa0731740:CDS |
| ATAGAAAACAAATAAAGGGT+AGG | 0.593991 | 5_1:-43183459 | Msa0731740:five_prime_UTR |
| TGATCCCTCACAAGTGACAA+TGG | 0.594519 | 5_1:+43182406 | None:intergenic |
| TTAAGGCATGGAGACAAGGA+AGG | 0.595232 | 5_1:-43180620 | Msa0731740:CDS |
| CAGATCCATTGTCACTTGTG+AGG | 0.595539 | 5_1:-43182411 | Msa0731740:CDS |
| GGATGATGTATCCATTCGGT+TGG | 0.597383 | 5_1:+43179772 | None:intergenic |
| ATCCTGGTAGGGTTTCAAGA+TGG | 0.598980 | 5_1:-43183262 | Msa0731740:CDS |
| AGGAAATTCTAACCGCTCAA+GGG | 0.600050 | 5_1:-43182375 | Msa0731740:CDS |
| CGACAGAATCGATAATCCAC+AGG | 0.602554 | 5_1:-43180373 | Msa0731740:intron |
| CTATTTCCACAATTGGAAGA+GGG | 0.607403 | 5_1:+43179692 | None:intergenic |
| TTGCAAGATTACCAACCGAA+TGG | 0.609726 | 5_1:-43179783 | Msa0731740:CDS |
| GCCTTTCATGACTATAAGGG+TGG | 0.610222 | 5_1:+43180694 | None:intergenic |
| TCAAACACCAATGTATCAGA+AGG | 0.614857 | 5_1:+43181041 | None:intergenic |
| ACCACCCTTATAGTCATGAA+AGG | 0.615076 | 5_1:-43180695 | Msa0731740:CDS |
| CTCGAGCATGGTCACCAGGG+TGG | 0.616762 | 5_1:-43180983 | Msa0731740:CDS |
| ATGGAGAATATGTGCGACGT+TGG | 0.617511 | 5_1:-43179816 | Msa0731740:CDS |
| ATCCTTCATTCACCACCCAA+GGG | 0.621653 | 5_1:+43180646 | None:intergenic |
| TTTGGTTCAGAAGAGATCTG+AGG | 0.624010 | 5_1:-43183376 | Msa0731740:CDS |
| GCGAATGAAGGAAATGAAGC+CGG | 0.625392 | 5_1:-43180786 | Msa0731740:CDS |
| GCAAGAGAGGCGGTGAACCA+AGG | 0.626545 | 5_1:-43179349 | Msa0731740:CDS |
| TGCAGCAACAGTGAGGCTCG+AGG | 0.628158 | 5_1:-43179668 | Msa0731740:CDS |
| ATGCTGGAATGAGAGAGTTG+TGG | 0.634623 | 5_1:-43180578 | Msa0731740:CDS |
| GGAATAGAAACACTAGACAA+AGG | 0.636438 | 5_1:-43179312 | Msa0731740:CDS |
| AGGGTGGAGTAACGCAAACA+AGG | 0.637628 | 5_1:-43180967 | Msa0731740:CDS |
| AGGAAGCACTTATACAGATG+TGG | 0.637665 | 5_1:-43179648 | Msa0731740:CDS |
| TTGCTCGAGCATGGTCACCA+GGG | 0.639347 | 5_1:-43180986 | Msa0731740:CDS |
| ATATCTGGTACTCTACCTGA+TGG | 0.639584 | 5_1:-43180405 | Msa0731740:CDS |
| TAACACCTGCTGCTAGTGCA+GGG | 0.643822 | 5_1:+43183342 | None:intergenic |
| ACTTCTCCGAAATGCAGATG+TGG | 0.646155 | 5_1:+43180858 | None:intergenic |
| ATGGTTGAAGAAGATTTGAG+TGG | 0.647851 | 5_1:+43183118 | None:intergenic |
| GACACTGAGACAAAGGTCCA+AGG | 0.648161 | 5_1:+43183657 | None:intergenic |
| GAGAGTTGTGGGCTACTGGT+TGG | 0.649242 | 5_1:-43180566 | Msa0731740:CDS |
| ATTAGGAACAATGCACCTCA+CGG | 0.651645 | 5_1:-43179502 | Msa0731740:CDS |
| TGTGAGGGATCATAGAGCAA+AGG | 0.653336 | 5_1:-43182395 | Msa0731740:CDS |
| AAATGCAAATGCAAGAGAGG+CGG | 0.669683 | 5_1:-43179359 | Msa0731740:CDS |
| TGTGTGAAGATGTCATCAAG+TGG | 0.673978 | 5_1:-43183416 | Msa0731740:exon |
| CAGATGTGGAGAGAGAAATG+AGG | 0.688093 | 5_1:+43180872 | None:intergenic |
| AAATAGATGCAGCAACAGTG+AGG | 0.702577 | 5_1:-43179675 | Msa0731740:CDS |
| ACGTACAGTAATCCCTTGAG+CGG | 0.706453 | 5_1:+43182363 | None:intergenic |
| GTGAAGATGTCATCAAGTGG+TGG | 0.713099 | 5_1:-43183413 | Msa0731740:exon |
| TGGTAGCGCCGAGTACCGTG+AGG | 0.721320 | 5_1:+43179487 | None:intergenic |
| AGAGATTAGAACAAATGACG+AGG | 0.735467 | 5_1:+43183682 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGATAGATTAATAATAATTA+AGG | + | chr5_1:43180120-43180139 | None:intergenic | 10.0% |
| !!! | TCTATATTGATGAAAATTTT+AGG | + | chr5_1:43179518-43179537 | None:intergenic | 15.0% |
| !! | TCAATATAGAAAACAAATAA+AGG | - | chr5_1:43179528-43179547 | Msa0731740:CDS | 15.0% |
| !! | CAATATAGAAAACAAATAAA+GGG | - | chr5_1:43179529-43179548 | Msa0731740:CDS | 15.0% |
| !! | TGTAATATAGAAATATGAAA+AGG | - | chr5_1:43180091-43180110 | Msa0731740:intron | 15.0% |
| !!! | TAATTATATTTTTGCAGTTT+AGG | - | chr5_1:43180228-43180247 | Msa0731740:intron | 15.0% |
| !! | AGTTTATTACCAAATAATAA+TGG | + | chr5_1:43180391-43180410 | None:intergenic | 15.0% |
| !!! | ATATTTTGTTTTGTTTTTTC+TGG | - | chr5_1:43180514-43180533 | Msa0731740:CDS | 15.0% |
| !! | TAAATAATGTGATTATACTT+TGG | + | chr5_1:43181324-43181343 | None:intergenic | 15.0% |
| !!! | CATATTTTTATTTCCTTATT+TGG | - | chr5_1:43182687-43182706 | Msa0731740:intron | 15.0% |
| !!! | CTTATTTCTATAATTTTTTC+CGG | + | chr5_1:43182925-43182944 | None:intergenic | 15.0% |
| !! | TTTCCAAGAAATTCTAAATT+TGG | + | chr5_1:43179404-43179423 | None:intergenic | 20.0% |
| !!! | CAAAAATATAGCATTACTTT+TGG | + | chr5_1:43179439-43179458 | None:intergenic | 20.0% |
| !!! | CAAAAGTAATGCTATATTTT+TGG | - | chr5_1:43179437-43179456 | Msa0731740:CDS | 20.0% |
| !! | TCTTAGTTACCATTATTATT+TGG | - | chr5_1:43180379-43180398 | Msa0731740:CDS | 20.0% |
| !! | AAAAAGTTGAAATAAAAGTG+AGG | + | chr5_1:43180833-43180852 | None:intergenic | 20.0% |
| !! | TATACATCAACAATGAAATT+TGG | + | chr5_1:43181417-43181436 | None:intergenic | 20.0% |
| !!! | TATTTTCATAGCGAAAAATA+GGG | + | chr5_1:43181560-43181579 | None:intergenic | 20.0% |
| !!! | TCTTTAAACAAACGTATTTT+TGG | + | chr5_1:43181606-43181625 | None:intergenic | 20.0% |
| !!! | TTTATTTCCTTATTTGGAAA+AGG | - | chr5_1:43182693-43182712 | Msa0731740:intron | 20.0% |
| !! | CAACCAAATTTAGAATTTCT+TGG | - | chr5_1:43179398-43179417 | Msa0731740:CDS | 25.0% |
| ! | CATTGTATTTCATCTCTTTA+TGG | - | chr5_1:43179492-43179511 | Msa0731740:CDS | 25.0% |
| ! | ATAGAAAACAAATAAAGGGT+AGG | - | chr5_1:43179533-43179552 | Msa0731740:CDS | 25.0% |
| !!! | TGTAGTTGGTGTTTTTATAT+GGG | - | chr5_1:43179683-43179702 | Msa0731740:CDS | 25.0% |
| ! | ATCTTCTTCAACCATTTATA+TGG | - | chr5_1:43179882-43179901 | Msa0731740:intron | 25.0% |
| ! | ACAAAAACTGACCATATAAA+TGG | + | chr5_1:43179896-43179915 | None:intergenic | 25.0% |
| ! | TAGTTAAAGGACTAATTTGA+TGG | - | chr5_1:43180182-43180201 | Msa0731740:intron | 25.0% |
| !!! | CTAATTTGATGGATTAAAAG+TGG | - | chr5_1:43180193-43180212 | Msa0731740:intron | 25.0% |
| ! | GATATTACTAAGCAAAAACT+CGG | + | chr5_1:43180315-43180334 | None:intergenic | 25.0% |
| ! | AGATTTATTGTATGAACCAT+GGG | - | chr5_1:43180663-43180682 | Msa0731740:CDS | 25.0% |
| ! | AAAGAATCAAAAGTTGTGAA+TGG | + | chr5_1:43180712-43180731 | None:intergenic | 25.0% |
| !!! | TCACAACTTTTGATTCTTTT+TGG | - | chr5_1:43180713-43180732 | Msa0731740:CDS | 25.0% |
| !!! | CACAACTTTTGATTCTTTTT+GGG | - | chr5_1:43180714-43180733 | Msa0731740:CDS | 25.0% |
| !! | AAACCTGGAATAATTCTTTT+AGG | + | chr5_1:43180787-43180806 | None:intergenic | 25.0% |
| ! | AATAAAAGTGAGGCTAAAAA+AGG | + | chr5_1:43180823-43180842 | None:intergenic | 25.0% |
| ! | CAAATTATCCATATTGAGAA+AGG | - | chr5_1:43180938-43180957 | Msa0731740:CDS | 25.0% |
| ! | TTTCAATTATCAATCCAAAG+TGG | + | chr5_1:43181046-43181065 | None:intergenic | 25.0% |
| !!! | TCTTCTTATTTTTGTCGAAT+CGG | + | chr5_1:43181115-43181134 | None:intergenic | 25.0% |
| ! | ATAATGTGATTATACTTTGG+TGG | + | chr5_1:43181321-43181340 | None:intergenic | 25.0% |
| ! | TAAAGGTTCAACAAATATGT+TGG | - | chr5_1:43181458-43181477 | Msa0731740:intron | 25.0% |
| ! | TAATGAAACACAAAAGTTGT+AGG | + | chr5_1:43181523-43181542 | None:intergenic | 25.0% |
| !! | ATTTTCATAGCGAAAAATAG+GGG | + | chr5_1:43181559-43181578 | None:intergenic | 25.0% |
| !! | GTATTTTCATAGCGAAAAAT+AGG | + | chr5_1:43181561-43181580 | None:intergenic | 25.0% |
| ! | TACCATTGCAAATATATGTT+TGG | - | chr5_1:43181578-43181597 | Msa0731740:intron | 25.0% |
| ! | ATCCAAACATATATTTGCAA+TGG | + | chr5_1:43181583-43181602 | None:intergenic | 25.0% |
| ! | AAGAACTAAGAATATCTGTA+TGG | + | chr5_1:43181682-43181701 | None:intergenic | 25.0% |
| ! | TAAAGTCAAAACATGAAACA+TGG | + | chr5_1:43181877-43181896 | None:intergenic | 25.0% |
| ! | TCAAATAGATTATCCAAACA+TGG | + | chr5_1:43182795-43182814 | None:intergenic | 25.0% |
| ! | AATAAGCTAAAAACAGACTT+TGG | - | chr5_1:43182939-43182958 | Msa0731740:intron | 25.0% |
| ! | CATGACAATATAAGAAAAGA+GGG | + | chr5_1:43183059-43183078 | None:intergenic | 25.0% |
| ! | ACATGACAATATAAGAAAAG+AGG | + | chr5_1:43183060-43183079 | None:intergenic | 25.0% |
| !!! | ATTATGTCATTTTCAGTTTG+AGG | - | chr5_1:43183135-43183154 | Msa0731740:CDS | 25.0% |
| !!! | TTATGTCATTTTCAGTTTGA+GGG | - | chr5_1:43183136-43183155 | Msa0731740:CDS | 25.0% |
| !! | ATATAGCATTACTTTTGGAG+TGG | + | chr5_1:43179434-43179453 | None:intergenic | 30.0% |
| !! | CTGTAGTTGGTGTTTTTATA+TGG | - | chr5_1:43179682-43179701 | Msa0731740:CDS | 30.0% |
| TAATATTGTCCTTCTTCTTC+AGG | + | chr5_1:43179711-43179730 | None:intergenic | 30.0% | |
| ! | GATTCATCTTTGAGAAATCT+TGG | - | chr5_1:43179780-43179799 | Msa0731740:CDS | 30.0% |
| ! | GTTGATCTTTTTGTAACAAG+AGG | + | chr5_1:43179810-43179829 | None:intergenic | 30.0% |
| ! | TGATAGTGTTTCTTCTTTGT+TGG | - | chr5_1:43179830-43179849 | Msa0731740:CDS | 30.0% |
| ! | TTGCATGATTTTGTATTTGC+TGG | - | chr5_1:43179957-43179976 | Msa0731740:intron | 30.0% |
| !! | TCCCTCAATTGCTTTAAAAA+TGG | - | chr5_1:43180147-43180166 | Msa0731740:intron | 30.0% |
| !!! | CCCATTTTTAAAGCAATTGA+GGG | + | chr5_1:43180151-43180170 | None:intergenic | 30.0% |
| !! | CCCTCAATTGCTTTAAAAAT+GGG | - | chr5_1:43180148-43180167 | Msa0731740:intron | 30.0% |
| !!! | TCCCATTTTTAAAGCAATTG+AGG | + | chr5_1:43180152-43180171 | None:intergenic | 30.0% |
| GGAGAAAGAATGATAGTTAA+AGG | - | chr5_1:43180169-43180188 | Msa0731740:intron | 30.0% | |
| !! | TGATGGATTAAAAGTGGTTT+AGG | - | chr5_1:43180199-43180218 | Msa0731740:intron | 30.0% |
| !! | GATGGATTAAAAGTGGTTTA+GGG | - | chr5_1:43180200-43180219 | Msa0731740:intron | 30.0% |
| CTATCACTCTTACTCTTATT+TGG | + | chr5_1:43180256-43180275 | None:intergenic | 30.0% | |
| AAGAGTAAGAGTGATAGTTT+AGG | - | chr5_1:43180259-43180278 | Msa0731740:intron | 30.0% | |
| CAGATTTATTGTATGAACCA+TGG | - | chr5_1:43180662-43180681 | Msa0731740:CDS | 30.0% | |
| AATCAAAAGTTGTGAATGGT+TGG | + | chr5_1:43180708-43180727 | None:intergenic | 30.0% | |
| !! | CTGGAATAATTCTTTTAGGT+GGG | + | chr5_1:43180783-43180802 | None:intergenic | 30.0% |
| CATGTATTCCTTTCTCAATA+TGG | + | chr5_1:43180949-43180968 | None:intergenic | 30.0% | |
| AACATAGCAAAAAGATGCAA+AGG | - | chr5_1:43180997-43181016 | Msa0731740:CDS | 30.0% | |
| ! | CAAAAAGATGCAAAGGTATA+AGG | - | chr5_1:43181004-43181023 | Msa0731740:CDS | 30.0% |
| CATCAACAATGAAATTTGGA+AGG | + | chr5_1:43181413-43181432 | None:intergenic | 30.0% | |
| AAGAAACTCTACAGATATGT+TGG | - | chr5_1:43181622-43181641 | Msa0731740:intron | 30.0% | |
| ACAAAAGTTGTACAAGTACT+TGG | - | chr5_1:43181817-43181836 | Msa0731740:intron | 30.0% | |
| GGCAATACAACAGATAATAT+AGG | + | chr5_1:43181856-43181875 | None:intergenic | 30.0% | |
| GCATTAACAACCTTCATAAA+TGG | - | chr5_1:43182047-43182066 | Msa0731740:intron | 30.0% | |
| ! | AACTTGTTTCTCAAGTCAAT+TGG | - | chr5_1:43182242-43182261 | Msa0731740:CDS | 30.0% |
| ! | GGTGAATGAAGGATATTTTA+AGG | - | chr5_1:43182355-43182374 | Msa0731740:CDS | 30.0% |
| !!! | ATGAAGGATATTTTAAGGCA+TGG | - | chr5_1:43182360-43182379 | Msa0731740:CDS | 30.0% |
| ! | ATGGGGGATGAAATATTTTT+GGG | - | chr5_1:43182514-43182533 | Msa0731740:intron | 30.0% |
| !!! | ATATTTTTGGGATACCCTTT+TGG | - | chr5_1:43182526-43182545 | Msa0731740:intron | 30.0% |
| ! | CGTTTTTCCTTTTCCAAATA+AGG | + | chr5_1:43182703-43182722 | None:intergenic | 30.0% |
| TGCTGTTATAAACACTTCTT+TGG | - | chr5_1:43182746-43182765 | Msa0731740:intron | 30.0% | |
| AAATAAAACACGTCCATGTT+TGG | - | chr5_1:43182779-43182798 | Msa0731740:intron | 30.0% | |
| !! | AGTTGTTTTCATAAGCTATC+CGG | - | chr5_1:43182903-43182922 | Msa0731740:intron | 30.0% |
| AAATGAGTGTATCTATCACT+AGG | + | chr5_1:43183113-43183132 | None:intergenic | 30.0% | |
| AGAAGAAGAAGAAACTTCTT+CGG | - | chr5_1:43183570-43183589 | Msa0731740:five_prime_UTR | 30.0% | |
| TTAGAACAAATGACGAGGAT+TGG | + | chr5_1:43179308-43179327 | None:intergenic | 35.0% | |
| AGAGATTAGAACAAATGACG+AGG | + | chr5_1:43179313-43179332 | None:intergenic | 35.0% | |
| TTTGTTCTAATCTCTCTCCT+TGG | - | chr5_1:43179318-43179337 | Msa0731740:CDS | 35.0% | |
| AAATAGTGACACTGAGACAA+AGG | + | chr5_1:43179345-43179364 | None:intergenic | 35.0% | |
| GAAGAAGGACAATATTATCC+TGG | - | chr5_1:43179714-43179733 | Msa0731740:CDS | 35.0% | |
| AAGGACAATATTATCCTGGT+AGG | - | chr5_1:43179718-43179737 | Msa0731740:CDS | 35.0% | |
| AGGACAATATTATCCTGGTA+GGG | - | chr5_1:43179719-43179738 | Msa0731740:CDS | 35.0% | |
| ATGGTGGCTTAAGAATAGTT+TGG | - | chr5_1:43179749-43179768 | Msa0731740:CDS | 35.0% | |
| TTGGAAGTTGTTAAATCCAC+TGG | - | chr5_1:43179849-43179868 | Msa0731740:intron | 35.0% | |
| ATGGTTGAAGAAGATTTGAG+TGG | + | chr5_1:43179877-43179896 | None:intergenic | 35.0% | |
| AGCAAAAACTCGGTATCATA+TGG | + | chr5_1:43180305-43180324 | None:intergenic | 35.0% | |
| ! | ACAATTGACTCTAGACATCT+TGG | - | chr5_1:43180336-43180355 | Msa0731740:intron | 35.0% |
| ! | CCTGGAATAATTCTTTTAGG+TGG | + | chr5_1:43180784-43180803 | None:intergenic | 35.0% |
| CCACCTAAAAGAATTATTCC+AGG | - | chr5_1:43180781-43180800 | Msa0731740:CDS | 35.0% | |
| AACTCTTGTGGTTCTTAGTT+TGG | - | chr5_1:43180899-43180918 | Msa0731740:CDS | 35.0% | |
| GTATAAGGAAAATTCCACAG+TGG | - | chr5_1:43181019-43181038 | Msa0731740:CDS | 35.0% | |
| AATCGGCAAAGATTAAGTCA+CGG | + | chr5_1:43181098-43181117 | None:intergenic | 35.0% | |
| AATGTCTCTGTCTCAAAACT+CGG | - | chr5_1:43181143-43181162 | Msa0731740:intron | 35.0% | |
| ! | AGATCACGAGCTTCTATTTT+CGG | - | chr5_1:43181204-43181223 | Msa0731740:intron | 35.0% |
| GGAAGGACTAATAGTTAATC+AGG | + | chr5_1:43181396-43181415 | None:intergenic | 35.0% | |
| ACTTGCTTCTCAGTCAAAAT+TGG | - | chr5_1:43181492-43181511 | Msa0731740:intron | 35.0% | |
| CTTGCTTCTCAGTCAAAATT+GGG | - | chr5_1:43181493-43181512 | Msa0731740:intron | 35.0% | |
| CATGACACTTACGTAATTGA+TGG | - | chr5_1:43181765-43181784 | Msa0731740:intron | 35.0% | |
| ! | TTGTACAAGTACTTGGTAGT+TGG | - | chr5_1:43181824-43181843 | Msa0731740:intron | 35.0% |
| AACATTTCTTGCCATGTTTC+AGG | - | chr5_1:43181912-43181931 | Msa0731740:intron | 35.0% | |
| TTGATACATCACCTGAAACA+TGG | + | chr5_1:43181926-43181945 | None:intergenic | 35.0% | |
| ! | AAAGTGTCCTTCTGATACAT+TGG | - | chr5_1:43181944-43181963 | Msa0731740:intron | 35.0% |
| TCAAACACCAATGTATCAGA+AGG | + | chr5_1:43181954-43181973 | None:intergenic | 35.0% | |
| ! | TCCGAATCAAACAAGTCTTT+TGG | - | chr5_1:43182183-43182202 | Msa0731740:intron | 35.0% |
| ! | CCCAAAAGACTTGTTTGATT+CGG | + | chr5_1:43182187-43182206 | None:intergenic | 35.0% |
| ! | CCGAATCAAACAAGTCTTTT+GGG | - | chr5_1:43182184-43182203 | Msa0731740:intron | 35.0% |
| !! | TTGGTCTTAGAGAGTATTCA+AGG | - | chr5_1:43182261-43182280 | Msa0731740:CDS | 35.0% |
| ! | ACACCTTAAGTTTTTCCCTT+GGG | - | chr5_1:43182331-43182350 | Msa0731740:CDS | 35.0% |
| !!! | TATTTTAAGGCATGGAGACA+AGG | - | chr5_1:43182368-43182387 | Msa0731740:CDS | 35.0% |
| CAAAACCTTGACAAAGAAAC+TGG | + | chr5_1:43182480-43182499 | None:intergenic | 35.0% | |
| ! | GATGGGGGATGAAATATTTT+TGG | - | chr5_1:43182513-43182532 | Msa0731740:intron | 35.0% |
| ! | GAAGTGTTTATAACAGCAAC+AGG | + | chr5_1:43182744-43182763 | None:intergenic | 35.0% |
| CTATTTCCACAATTGGAAGA+GGG | + | chr5_1:43183303-43183322 | None:intergenic | 35.0% | |
| TCTATTTCCACAATTGGAAG+AGG | + | chr5_1:43183304-43183323 | None:intergenic | 35.0% | |
| ! | TTTTCCTCAGGACATACAAA+TGG | - | chr5_1:43183450-43183469 | Msa0731740:five_prime_UTR | 35.0% |
| AGGAAAGACATGAACCTATT+AGG | - | chr5_1:43183473-43183492 | Msa0731740:five_prime_UTR | 35.0% | |
| ! | ACTCTAGAAGAAGTCATACT+TGG | + | chr5_1:43183544-43183563 | None:intergenic | 35.0% |
| TCTCTTGCATTTGCATTTGT+TGG | + | chr5_1:43183631-43183650 | None:intergenic | 35.0% | |
| AACAAATGCAAATGCAAGAG+AGG | - | chr5_1:43183630-43183649 | Msa0731740:five_prime_UTR | 35.0% | |
| GGAATAGAAACACTAGACAA+AGG | - | chr5_1:43183680-43183699 | Msa0731740:five_prime_UTR | 35.0% | |
| TGTGTGAAGATGTCATCAAG+TGG | - | chr5_1:43179576-43179595 | Msa0731740:CDS | 40.0% | |
| ! | TTTGGTTCAGAAGAGATCTG+AGG | - | chr5_1:43179616-43179635 | Msa0731740:CDS | 40.0% |
| TTGGTTCAGAAGAGATCTGA+GGG | - | chr5_1:43179617-43179636 | Msa0731740:CDS | 40.0% | |
| ! | TCTAGACATCTTGGTAGTTG+TGG | - | chr5_1:43180345-43180364 | Msa0731740:intron | 40.0% |
| ! | AGATCCATTGTCACTTGTGA+GGG | - | chr5_1:43180582-43180601 | Msa0731740:CDS | 40.0% |
| AAGGAAATTCTAACCGCTCA+AGG | - | chr5_1:43180616-43180635 | Msa0731740:CDS | 40.0% | |
| AGGAAATTCTAACCGCTCAA+GGG | - | chr5_1:43180617-43180636 | Msa0731740:CDS | 40.0% | |
| !! | ATTCTTTTAGGTGGGAGAAG+AGG | + | chr5_1:43180775-43180794 | None:intergenic | 40.0% |
| AAGTGAGGCTAAAAAAGGAG+AGG | + | chr5_1:43180818-43180837 | None:intergenic | 40.0% | |
| ! | GTGGTTCTTAGTTTGGATTC+TGG | - | chr5_1:43180906-43180925 | Msa0731740:CDS | 40.0% |
| TTAAGTCACGGTCTCATACA+TGG | + | chr5_1:43181086-43181105 | None:intergenic | 40.0% | |
| TCACGGCTAAGACATATACA+TGG | + | chr5_1:43181176-43181195 | None:intergenic | 40.0% | |
| ATGTATATGTCTTAGCCGTG+AGG | - | chr5_1:43181175-43181194 | Msa0731740:intron | 40.0% | |
| ! | ATGATAACGCCAGTTGTTGT+TGG | - | chr5_1:43181227-43181246 | Msa0731740:intron | 40.0% |
| ! | TCTGAAACACCAACAACAAC+TGG | + | chr5_1:43181239-43181258 | None:intergenic | 40.0% |
| CTACAGTAGACCACTTTGAT+AGG | + | chr5_1:43181293-43181312 | None:intergenic | 40.0% | |
| ATCAAAGTGGTCTACTGTAG+AGG | - | chr5_1:43181293-43181312 | Msa0731740:intron | 40.0% | |
| TCAAAGTGGTCTACTGTAGA+GGG | - | chr5_1:43181294-43181313 | Msa0731740:intron | 40.0% | |
| !! | TGCAACAGAGTGCTGATTAA+AGG | - | chr5_1:43181734-43181753 | Msa0731740:intron | 40.0% |
| GATCAGTGGACCATTTATGA+AGG | + | chr5_1:43182060-43182079 | None:intergenic | 40.0% | |
| ! | TTCTTAGAGTACTCGATCAG+TGG | + | chr5_1:43182074-43182093 | None:intergenic | 40.0% |
| ! | TCGAGTACTCTAAGAATCGA+AGG | - | chr5_1:43182078-43182097 | Msa0731740:intron | 40.0% |
| !! | CTTGTTTGATTCGGACAAGA+TGG | + | chr5_1:43182178-43182197 | None:intergenic | 40.0% |
| CAAGTTAACACTTTCTTCGC+CGG | + | chr5_1:43182228-43182247 | None:intergenic | 40.0% | |
| ACCACCCTTATAGTCATGAA+AGG | - | chr5_1:43182297-43182316 | Msa0731740:CDS | 40.0% | |
| GAGGCCTTTCATGACTATAA+GGG | + | chr5_1:43182304-43182323 | None:intergenic | 40.0% | |
| AGAGGCCTTTCATGACTATA+AGG | + | chr5_1:43182305-43182324 | None:intergenic | 40.0% | |
| ! | AACTTAAGGTGTCCAAGTAG+AGG | + | chr5_1:43182323-43182342 | None:intergenic | 40.0% |
| ! | GACACCTTAAGTTTTTCCCT+TGG | - | chr5_1:43182330-43182349 | Msa0731740:CDS | 40.0% |
| CGTTTCCAGTTTCTTTGTCA+AGG | - | chr5_1:43182472-43182491 | Msa0731740:intron | 40.0% | |
| CTCAAGATCAGCATCCAAAA+GGG | + | chr5_1:43182543-43182562 | None:intergenic | 40.0% | |
| TCTCAAGATCAGCATCCAAA+AGG | + | chr5_1:43182544-43182563 | None:intergenic | 40.0% | |
| CTTGGTTGGCAGTATATATC+TGG | - | chr5_1:43182572-43182591 | Msa0731740:intron | 40.0% | |
| ATATCTGGTACTCTACCTGA+TGG | - | chr5_1:43182587-43182606 | Msa0731740:intron | 40.0% | |
| GCTAAAAACAGACTTTGGAC+AGG | - | chr5_1:43182944-43182963 | Msa0731740:intron | 40.0% | |
| GGCTGAAACTAGAAACAGTT+GGG | + | chr5_1:43183038-43183057 | None:intergenic | 40.0% | |
| GGATACAAGTGTGATCCAAA+TGG | - | chr5_1:43183157-43183176 | Msa0731740:CDS | 40.0% | |
| !! | GTTGGTAATCTTGCAAGTTC+AGG | + | chr5_1:43183205-43183224 | None:intergenic | 40.0% |
| TTGCAAGATTACCAACCGAA+TGG | - | chr5_1:43183209-43183228 | Msa0731740:CDS | 40.0% | |
| CCATGGATGATGTATCCATT+CGG | + | chr5_1:43183227-43183246 | None:intergenic | 40.0% | |
| AAACTACCCTCTTCCAATTG+TGG | - | chr5_1:43183294-43183313 | Msa0731740:CDS | 40.0% | |
| GCTGCATCTATTTCCACAAT+TGG | + | chr5_1:43183310-43183329 | None:intergenic | 40.0% | |
| AAATAGATGCAGCAACAGTG+AGG | - | chr5_1:43183317-43183336 | Msa0731740:CDS | 40.0% | |
| !! | AGGAAGCACTTATACAGATG+TGG | - | chr5_1:43183344-43183363 | Msa0731740:CDS | 40.0% |
| !! | AACACCTATTGCTTTTCCTC+AGG | - | chr5_1:43183438-43183457 | Msa0731740:five_prime_UTR | 40.0% |
| ATGTCCTGAGGAAAAGCAAT+AGG | + | chr5_1:43183445-43183464 | None:intergenic | 40.0% | |
| TGAGGTGCATTGTTCCTAAT+AGG | + | chr5_1:43183490-43183509 | None:intergenic | 40.0% | |
| ATTAGGAACAATGCACCTCA+CGG | - | chr5_1:43183490-43183509 | Msa0731740:five_prime_UTR | 40.0% | |
| TACTTGGTACCATTTGATCC+TGG | + | chr5_1:43183528-43183547 | None:intergenic | 40.0% | |
| ! | AACTTCTTCGGTTCGAAACT+CGG | - | chr5_1:43183582-43183601 | Msa0731740:five_prime_UTR | 40.0% |
| AAATGCAAATGCAAGAGAGG+CGG | - | chr5_1:43183633-43183652 | Msa0731740:five_prime_UTR | 40.0% | |
| GTGAAGATGTCATCAAGTGG+TGG | - | chr5_1:43179579-43179598 | Msa0731740:CDS | 45.0% | |
| AAGATGTCATCAAGTGGTGG+TGG | - | chr5_1:43179582-43179601 | Msa0731740:CDS | 45.0% | |
| !! | GTGGTGGATGCAGTATAGTT+TGG | - | chr5_1:43179598-43179617 | Msa0731740:CDS | 45.0% |
| ATATGGGCACCTGAAGAAGA+AGG | - | chr5_1:43179699-43179718 | Msa0731740:CDS | 45.0% | |
| ATCCTGGTAGGGTTTCAAGA+TGG | - | chr5_1:43179730-43179749 | Msa0731740:CDS | 45.0% | |
| ! | CAGATCCATTGTCACTTGTG+AGG | - | chr5_1:43180581-43180600 | Msa0731740:CDS | 45.0% |
| TGATCCCTCACAAGTGACAA+TGG | + | chr5_1:43180589-43180608 | None:intergenic | 45.0% | |
| TGTGAGGGATCATAGAGCAA+AGG | - | chr5_1:43180597-43180616 | Msa0731740:CDS | 45.0% | |
| ACGTACAGTAATCCCTTGAG+CGG | + | chr5_1:43180632-43180651 | None:intergenic | 45.0% | |
| ! | TTTTCATCGTTCACGTCCCA+TGG | + | chr5_1:43180682-43180701 | None:intergenic | 45.0% |
| TGGGACGTGAACGATGAAAA+TGG | - | chr5_1:43180682-43180701 | Msa0731740:CDS | 45.0% | |
| GGAGAGGAACAAAGTAAACC+TGG | + | chr5_1:43180802-43180821 | None:intergenic | 45.0% | |
| CATGAGTCACAGAACTCTTG+TGG | - | chr5_1:43180887-43180906 | Msa0731740:CDS | 45.0% | |
| AATTCCACAGTGGACCACTT+TGG | - | chr5_1:43181029-43181048 | Msa0731740:CDS | 45.0% | |
| CTGTCTCAAAACTCGGTACT+TGG | - | chr5_1:43181150-43181169 | Msa0731740:intron | 45.0% | |
| TTTGATAGGTGGTACACGGT+TGG | + | chr5_1:43181279-43181298 | None:intergenic | 45.0% | |
| CCACTTTGATAGGTGGTACA+CGG | + | chr5_1:43181283-43181302 | None:intergenic | 45.0% | |
| CAGTAGACCACTTTGATAGG+TGG | + | chr5_1:43181290-43181309 | None:intergenic | 45.0% | |
| CAAAGTGGTCTACTGTAGAG+GGG | - | chr5_1:43181295-43181314 | Msa0731740:intron | 45.0% | |
| TGGAGAGAGAAATGAGGTTG+TGG | + | chr5_1:43182117-43182136 | None:intergenic | 45.0% | |
| CAGATGTGGAGAGAGAAATG+AGG | + | chr5_1:43182123-43182142 | None:intergenic | 45.0% | |
| CTCTCTCCACATCTGCATTT+CGG | - | chr5_1:43182128-43182147 | Msa0731740:intron | 45.0% | |
| ACTTCTCCGAAATGCAGATG+TGG | + | chr5_1:43182137-43182156 | None:intergenic | 45.0% | |
| ! | CAAGTCTTTTGGGCGAATGA+AGG | - | chr5_1:43182194-43182213 | Msa0731740:intron | 45.0% |
| GCGAATGAAGGAAATGAAGC+CGG | - | chr5_1:43182206-43182225 | Msa0731740:intron | 45.0% | |
| GCCTTTCATGACTATAAGGG+TGG | + | chr5_1:43182301-43182320 | None:intergenic | 45.0% | |
| AGTCATGAAAGGCCTCTACT+TGG | - | chr5_1:43182308-43182327 | Msa0731740:CDS | 45.0% | |
| CCACCCAAGGGAAAAACTTA+AGG | + | chr5_1:43182337-43182356 | None:intergenic | 45.0% | |
| ! | CCTTAAGTTTTTCCCTTGGG+TGG | - | chr5_1:43182334-43182353 | Msa0731740:CDS | 45.0% |
| ATCCTTCATTCACCACCCAA+GGG | + | chr5_1:43182349-43182368 | None:intergenic | 45.0% | |
| TATCCTTCATTCACCACCCA+AGG | + | chr5_1:43182350-43182369 | None:intergenic | 45.0% | |
| TTAAGGCATGGAGACAAGGA+AGG | - | chr5_1:43182372-43182391 | Msa0731740:CDS | 45.0% | |
| TCATTCCAGCATCCACCAAA+GGG | + | chr5_1:43182406-43182425 | None:intergenic | 45.0% | |
| ATGCTGGAATGAGAGAGTTG+TGG | - | chr5_1:43182414-43182433 | Msa0731740:intron | 45.0% | |
| TGCTGGAATGAGAGAGTTGT+GGG | - | chr5_1:43182415-43182434 | Msa0731740:intron | 45.0% | |
| ! | CTACTGGTTGGCTACATGAT+CGG | - | chr5_1:43182438-43182457 | Msa0731740:intron | 45.0% |
| ! | TCAAGGTTTTGCAGCTTCCT+TGG | - | chr5_1:43182489-43182508 | Msa0731740:intron | 45.0% |
| ! | TTTTGCAGCTTCCTTGGAGA+TGG | - | chr5_1:43182495-43182514 | Msa0731740:intron | 45.0% |
| TTTGCAGCTTCCTTGGAGAT+GGG | - | chr5_1:43182496-43182515 | Msa0731740:intron | 45.0% | |
| TATTTCATCCCCCATCTCCA+AGG | + | chr5_1:43182509-43182528 | None:intergenic | 45.0% | |
| CGACAGAATCGATAATCCAC+AGG | - | chr5_1:43182619-43182638 | Msa0731740:intron | 45.0% | |
| GGGCTGAAACTAGAAACAGT+TGG | + | chr5_1:43183039-43183058 | None:intergenic | 45.0% | |
| CGTCGCACATATTCTCCATT+TGG | + | chr5_1:43183175-43183194 | None:intergenic | 45.0% | |
| ATGGAGAATATGTGCGACGT+TGG | - | chr5_1:43183176-43183195 | Msa0731740:CDS | 45.0% | |
| GGATGATGTATCCATTCGGT+TGG | + | chr5_1:43183223-43183242 | None:intergenic | 45.0% | |
| CCGAATGGATACATCATCCA+TGG | - | chr5_1:43183224-43183243 | Msa0731740:CDS | 45.0% | |
| ! | ACTGATTCTGGTGCATTCCA+TGG | + | chr5_1:43183244-43183263 | None:intergenic | 45.0% |
| CAAGTTCAATACCAGCAGCT+TGG | + | chr5_1:43183270-43183289 | None:intergenic | 45.0% | |
| ! | CAAGCTGCTGGTATTGAACT+TGG | - | chr5_1:43183268-43183287 | Msa0731740:CDS | 45.0% |
| TCAAGAGCTGCAGCAGAAAA+CGG | - | chr5_1:43183382-43183401 | Msa0731740:CDS | 45.0% | |
| TGAGTCTCCAAGACCTTCTT+CGG | + | chr5_1:43183410-43183429 | None:intergenic | 45.0% | |
| TCCTCAGGACATACAAATGG+AGG | - | chr5_1:43183453-43183472 | Msa0731740:five_prime_UTR | 45.0% | |
| TCCTCCATTTGTATGTCCTG+AGG | + | chr5_1:43183457-43183476 | None:intergenic | 45.0% | |
| !!! | TTTTACAAAAAAAAATATAA+AGG | - | chr5_1:43181441-43181460 | Msa0731740:intron | 5.0% |
| GACACTGAGACAAAGGTCCA+AGG | + | chr5_1:43179338-43179357 | None:intergenic | 50.0% | |
| CAGAAGAGATCTGAGGGTAG+AGG | - | chr5_1:43179623-43179642 | Msa0731740:CDS | 50.0% | |
| TAACACCTGCTGCTAGTGCA+GGG | + | chr5_1:43179653-43179672 | None:intergenic | 50.0% | |
| ! | GTTAGAGCAGGTGCTGTAGT+TGG | - | chr5_1:43179669-43179688 | Msa0731740:CDS | 50.0% |
| CACCATCTTGAAACCCTACC+AGG | + | chr5_1:43179735-43179754 | None:intergenic | 50.0% | |
| CTGGTAGGGTTTCAAGATGG+TGG | - | chr5_1:43179733-43179752 | Msa0731740:CDS | 50.0% | |
| GAAGATTTGAGTGGCTCCAG+TGG | + | chr5_1:43179868-43179887 | None:intergenic | 50.0% | |
| GTGGGTCATAAGGCATGCTA+AGG | + | chr5_1:43180747-43180766 | None:intergenic | 50.0% | |
| !! | AGAGGTGCTTGTGGGTCATA+AGG | + | chr5_1:43180757-43180776 | None:intergenic | 50.0% |
| AGTTCTGTGACTCATGCAGC+TGG | + | chr5_1:43180883-43180902 | None:intergenic | 50.0% | |
| CAATCCAAAGTGGTCCACTG+TGG | + | chr5_1:43181036-43181055 | None:intergenic | 50.0% | |
| CCGTGTACCACCTATCAAAG+TGG | - | chr5_1:43181280-43181299 | Msa0731740:intron | 50.0% | |
| TTGTTTGCGTTACTCCACCC+TGG | + | chr5_1:43182026-43182045 | None:intergenic | 50.0% | |
| AGGGTGGAGTAACGCAAACA+AGG | - | chr5_1:43182025-43182044 | Msa0731740:intron | 50.0% | |
| TTCCCTTGGGTGGTGAATGA+AGG | - | chr5_1:43182344-43182363 | Msa0731740:CDS | 50.0% | |
| AGCATCCACCAAAGGGTAAC+CGG | + | chr5_1:43182399-43182418 | None:intergenic | 50.0% | |
| CTCATTCCAGCATCCACCAA+AGG | + | chr5_1:43182407-43182426 | None:intergenic | 50.0% | |
| ! | ATGAGAGAGTTGTGGGCTAC+TGG | - | chr5_1:43182422-43182441 | Msa0731740:intron | 50.0% |
| TTGCAGCTTCCTTGGAGATG+GGG | - | chr5_1:43182497-43182516 | Msa0731740:intron | 50.0% | |
| GATCTTGAGAGCGATGCTCT+TGG | - | chr5_1:43182554-43182573 | Msa0731740:intron | 50.0% | |
| TTGAGAGCGATGCTCTTGGT+TGG | - | chr5_1:43182558-43182577 | Msa0731740:intron | 50.0% | |
| CTGTCGAATTCACGACCATC+AGG | + | chr5_1:43182605-43182624 | None:intergenic | 50.0% | |
| TGCAGAAGCAATTGCACCTG+TGG | + | chr5_1:43182638-43182657 | None:intergenic | 50.0% | |
| !! | GCAGCTTGGAGTACTGATTC+TGG | + | chr5_1:43183256-43183275 | None:intergenic | 50.0% |
| GAATCAGTACTCCAAGCTGC+TGG | - | chr5_1:43183256-43183275 | Msa0731740:CDS | 50.0% | |
| GCAGAAAACGGAACCGAAGA+AGG | - | chr5_1:43183394-43183413 | Msa0731740:CDS | 50.0% | |
| AACGGAACCGAAGAAGGTCT+TGG | - | chr5_1:43183400-43183419 | Msa0731740:CDS | 50.0% | |
| ACAATGCACCTCACGGTACT+CGG | - | chr5_1:43183497-43183516 | Msa0731740:five_prime_UTR | 50.0% | |
| !! | AACCAAGGAGCGTTGCAGAA+TGG | - | chr5_1:43183658-43183677 | Msa0731740:five_prime_UTR | 50.0% |
| !! | ACCAAGGAGCGTTGCAGAAT+GGG | - | chr5_1:43183659-43183678 | Msa0731740:five_prime_UTR | 50.0% |
| GATAACCCTGCACTAGCAGC+AGG | - | chr5_1:43179645-43179664 | Msa0731740:CDS | 55.0% | |
| CTAACACCTGCTGCTAGTGC+AGG | + | chr5_1:43179654-43179673 | None:intergenic | 55.0% | |
| CTAGCAGCAGGTGTTAGAGC+AGG | - | chr5_1:43179657-43179676 | Msa0731740:CDS | 55.0% | |
| !! | GTGGGAGAAGAGGTGCTTGT+GGG | + | chr5_1:43180765-43180784 | None:intergenic | 55.0% |
| ATGTCTTAGCCGTGAGGACG+TGG | - | chr5_1:43181181-43181200 | Msa0731740:intron | 55.0% | |
| TCGTGATCTCCACGTCCTCA+CGG | + | chr5_1:43181193-43181212 | None:intergenic | 55.0% | |
| ACGCACTTCTTGCTCGAGCA+TGG | - | chr5_1:43181997-43182016 | Msa0731740:intron | 55.0% | |
| TTGCTCGAGCATGGTCACCA+GGG | - | chr5_1:43182006-43182025 | Msa0731740:intron | 55.0% | |
| GCATGGAGACAAGGAAGGAC+CGG | - | chr5_1:43182377-43182396 | Msa0731740:CDS | 55.0% | |
| AGGAAGGACCGGTTACCCTT+TGG | - | chr5_1:43182388-43182407 | Msa0731740:CDS | 55.0% | |
| AAGGACCGGTTACCCTTTGG+TGG | - | chr5_1:43182391-43182410 | Msa0731740:CDS | 55.0% | |
| ! | GGTTACCCTTTGGTGGATGC+TGG | - | chr5_1:43182398-43182417 | Msa0731740:CDS | 55.0% |
| ! | GAGAGTTGTGGGCTACTGGT+TGG | - | chr5_1:43182426-43182445 | Msa0731740:intron | 55.0% |
| TGCAGCTTCCTTGGAGATGG+GGG | - | chr5_1:43182498-43182517 | Msa0731740:intron | 55.0% | |
| TCGGCGCTACCAGGATCAAA+TGG | - | chr5_1:43183516-43183535 | Msa0731740:five_prime_UTR | 55.0% | |
| ! | TCTTCGGTTCGAAACTCGGC+AGG | - | chr5_1:43183586-43183605 | Msa0731740:five_prime_UTR | 55.0% |
| TCCCATTCTGCAACGCTCCT+TGG | + | chr5_1:43183663-43183682 | None:intergenic | 55.0% | |
| !! | GGTGGGAGAAGAGGTGCTTG+TGG | + | chr5_1:43180766-43180785 | None:intergenic | 60.0% |
| CTTGCTCGAGCATGGTCACC+AGG | - | chr5_1:43182005-43182024 | Msa0731740:intron | 60.0% | |
| TGCAGCAACAGTGAGGCTCG+AGG | - | chr5_1:43183324-43183343 | Msa0731740:CDS | 60.0% | |
| GCAAGAGAGGCGGTGAACCA+AGG | - | chr5_1:43183643-43183662 | Msa0731740:five_prime_UTR | 60.0% | |
| CTCGAGCATGGTCACCAGGG+TGG | - | chr5_1:43182009-43182028 | Msa0731740:intron | 65.0% | |
| ! | TGGTAGCGCCGAGTACCGTG+AGG | + | chr5_1:43183508-43183527 | None:intergenic | 65.0% |
| TCACGGTACTCGGCGCTACC+AGG | - | chr5_1:43183507-43183526 | Msa0731740:five_prime_UTR | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 43179303 | 43183711 | 43179303 | ID=Msa0731740;Name=Msa0731740 |
| chr5_1 | mRNA | 43179303 | 43183711 | 43179303 | ID=Msa0731740-mRNA-1;Parent=Msa0731740;Name=Msa0731740-mRNA-1;_AED=0.03;_eAED=0.03;_QI=282|1|0.75|1|1|1|4|0|602 |
| chr5_1 | exon | 43179303 | 43179863 | 43179303 | ID=Msa0731740-mRNA-1:exon:12337;Parent=Msa0731740-mRNA-1 |
| chr5_1 | exon | 43180374 | 43181080 | 43180374 | ID=Msa0731740-mRNA-1:exon:12336;Parent=Msa0731740-mRNA-1 |
| chr5_1 | exon | 43182212 | 43182430 | 43182212 | ID=Msa0731740-mRNA-1:exon:12335;Parent=Msa0731740-mRNA-1 |
| chr5_1 | exon | 43183111 | 43183711 | 43183111 | ID=Msa0731740-mRNA-1:exon:12334;Parent=Msa0731740-mRNA-1 |
| chr5_1 | five_prime_UTR | 43183430 | 43183711 | 43183430 | ID=Msa0731740-mRNA-1:five_prime_utr;Parent=Msa0731740-mRNA-1 |
| chr5_1 | CDS | 43183111 | 43183429 | 43183111 | ID=Msa0731740-mRNA-1:cds;Parent=Msa0731740-mRNA-1 |
| chr5_1 | CDS | 43182212 | 43182430 | 43182212 | ID=Msa0731740-mRNA-1:cds;Parent=Msa0731740-mRNA-1 |
| chr5_1 | CDS | 43180374 | 43181080 | 43180374 | ID=Msa0731740-mRNA-1:cds;Parent=Msa0731740-mRNA-1 |
| chr5_1 | CDS | 43179303 | 43179863 | 43179303 | ID=Msa0731740-mRNA-1:cds;Parent=Msa0731740-mRNA-1 |
| Gene Sequence |
| Protein sequence |
