Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0334180 | XP_013464759.1 | 91.453 | 351 | 14 | 4 | 1 | 338 | 1 | 348 | 0.0 | 620 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0334180 | sp|Q6CIY7|SYM1_KLULA | 28.655 | 171 | 116 | 3 | 166 | 332 | 6 | 174 | 3.12e-16 | 79.3 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0025690 | Msa0334180 | 0.806704 | 7.229876e-50 | -8.615850e-47 |
| Msa0026120 | Msa0334180 | 0.810796 | 9.643718e-51 | -8.615850e-47 |
| Msa0028050 | Msa0334180 | 0.841956 | 3.468364e-58 | -8.615850e-47 |
| Msa0039200 | Msa0334180 | 0.822703 | 2.055010e-53 | -8.615850e-47 |
| Msa0039590 | Msa0334180 | 0.813434 | 2.564198e-51 | -8.615850e-47 |
| Msa0046670 | Msa0334180 | 0.809496 | 1.838872e-50 | -8.615850e-47 |
| Msa0046700 | Msa0334180 | 0.803881 | 2.820790e-49 | -8.615850e-47 |
| Msa0072710 | Msa0334180 | 0.829296 | 5.572996e-55 | -8.615850e-47 |
| Msa0077330 | Msa0334180 | 0.811612 | 6.418745e-51 | -8.615850e-47 |
| Msa0083200 | Msa0334180 | 0.812974 | 3.235367e-51 | -8.615850e-47 |
| Msa0086820 | Msa0334180 | 0.821738 | 3.441690e-53 | -8.615850e-47 |
| Msa0087880 | Msa0334180 | 0.812971 | 3.241190e-51 | -8.615850e-47 |
| Msa0112800 | Msa0334180 | 0.805805 | 1.118050e-49 | -8.615850e-47 |
| Msa0116950 | Msa0334180 | 0.800546 | 1.369929e-48 | -8.615850e-47 |
| Msa0133670 | Msa0334180 | 0.821417 | 4.083865e-53 | -8.615850e-47 |
| Msa0133880 | Msa0334180 | 0.824231 | 9.029454e-54 | -8.615850e-47 |
| Msa0153640 | Msa0334180 | 0.804011 | 2.650516e-49 | -8.615850e-47 |
| Msa0156780 | Msa0334180 | 0.805607 | 1.230262e-49 | -8.615850e-47 |
| Msa0164630 | Msa0334180 | 0.811002 | 8.705288e-51 | -8.615850e-47 |
| Msa0166580 | Msa0334180 | 0.806728 | 7.144521e-50 | -8.615850e-47 |
| Msa0175480 | Msa0334180 | 0.850932 | 1.233170e-60 | -8.615850e-47 |
| Msa0184120 | Msa0334180 | 0.819557 | 1.090757e-52 | -8.615850e-47 |
| Msa0206600 | Msa0334180 | 0.815431 | 9.277538e-52 | -8.615850e-47 |
| Msa0216560 | Msa0334180 | 0.851478 | 8.645643e-61 | -8.615850e-47 |
| Msa0218480 | Msa0334180 | 0.814657 | 1.377879e-51 | -8.615850e-47 |
| Msa0218590 | Msa0334180 | 0.820509 | 6.608016e-53 | -8.615850e-47 |
| Msa0222510 | Msa0334180 | 0.809681 | 1.677956e-50 | -8.615850e-47 |
| Msa0222720 | Msa0334180 | 0.886993 | 2.107372e-72 | -8.615850e-47 |
| Msa0256170 | Msa0334180 | 0.836506 | 8.991419e-57 | -8.615850e-47 |
| Msa0256430 | Msa0334180 | 0.922916 | 5.269408e-89 | -8.615850e-47 |
| Msa0263520 | Msa0334180 | 0.812157 | 4.882620e-51 | -8.615850e-47 |
| Msa0264020 | Msa0334180 | 0.891626 | 3.346118e-74 | -8.615850e-47 |
| Msa0266120 | Msa0334180 | 0.800973 | 1.121014e-48 | -8.615850e-47 |
| Msa0270610 | Msa0334180 | 0.805226 | 1.478461e-49 | -8.615850e-47 |
| Msa0290600 | Msa0334180 | 0.809285 | 2.041152e-50 | -8.615850e-47 |
| Msa0292150 | Msa0334180 | 0.847520 | 1.097890e-59 | -8.615850e-47 |
| Msa0295840 | Msa0334180 | 0.894936 | 1.541921e-75 | -8.615850e-47 |
| Msa0302020 | Msa0334180 | 0.867160 | 1.679033e-65 | -8.615850e-47 |
| Msa0310490 | Msa0334180 | 0.801906 | 7.219153e-49 | -8.615850e-47 |
| Msa0330370 | Msa0334180 | 0.832365 | 9.854689e-56 | -8.615850e-47 |
| Msa0334180 | Msa0338670 | 0.812549 | 4.009732e-51 | -8.615850e-47 |
| Msa0334180 | Msa0339340 | 0.895149 | 1.261079e-75 | -8.615850e-47 |
| Msa0334180 | Msa0358720 | 0.838035 | 3.652986e-57 | -8.615850e-47 |
| Msa0334180 | Msa0367310 | 0.808622 | 2.828782e-50 | -8.615850e-47 |
| Msa0334180 | Msa0372250 | 0.827236 | 1.749033e-54 | -8.615850e-47 |
| Msa0334180 | Msa0377460 | 0.806254 | 8.994325e-50 | -8.615850e-47 |
| Msa0334180 | Msa0379500 | 0.812672 | 3.768786e-51 | -8.615850e-47 |
| Msa0334180 | Msa0385870 | 0.808967 | 2.387499e-50 | -8.615850e-47 |
| Msa0334180 | Msa0390950 | 0.803230 | 3.849500e-49 | -8.615850e-47 |
| Msa0334180 | Msa0404180 | 0.833643 | 4.739660e-56 | -8.615850e-47 |
| Msa0334180 | Msa0408160 | 0.806337 | 8.639569e-50 | -8.615850e-47 |
| Msa0334180 | Msa0421100 | 0.847011 | 1.514158e-59 | -8.615850e-47 |
| Msa0334180 | Msa0423590 | 0.827815 | 1.269836e-54 | -8.615850e-47 |
| Msa0334180 | Msa0423600 | 0.819791 | 9.648777e-53 | -8.615850e-47 |
| Msa0334180 | Msa0426890 | 0.800073 | 1.709690e-48 | -8.615850e-47 |
| Msa0334180 | Msa0426990 | 0.801986 | 6.951120e-49 | -8.615850e-47 |
| Msa0334180 | Msa0427050 | 0.808070 | 3.709905e-50 | -8.615850e-47 |
| Msa0334180 | Msa0455610 | 0.800904 | 1.157817e-48 | -8.615850e-47 |
| Msa0334180 | Msa0463580 | 0.819350 | 1.216430e-52 | -8.615850e-47 |
| Msa0334180 | Msa0470650 | 0.808115 | 3.628584e-50 | -8.615850e-47 |
| Msa0334180 | Msa0471890 | 0.811544 | 6.640419e-51 | -8.615850e-47 |
| Msa0334180 | Msa0472870 | 0.827255 | 1.731141e-54 | -8.615850e-47 |
| Msa0334180 | Msa0473320 | 0.826805 | 2.218064e-54 | -8.615850e-47 |
| Msa0334180 | Msa0473450 | 0.822752 | 2.002653e-53 | -8.615850e-47 |
| Msa0334180 | Msa0486850 | 0.832215 | 1.073447e-55 | -8.615850e-47 |
| Msa0334180 | Msa0486870 | 0.847825 | 9.050947e-60 | -8.615850e-47 |
| Msa0334180 | Msa0499950 | 0.803625 | 3.188907e-49 | -8.615850e-47 |
| Msa0334180 | Msa0509350 | 0.822005 | 2.985711e-53 | -8.615850e-47 |
| Msa0334180 | Msa0513660 | 0.821799 | 3.331042e-53 | -8.615850e-47 |
| Msa0334180 | Msa0515680 | 0.822719 | 2.037854e-53 | -8.615850e-47 |
| Msa0334180 | Msa0515830 | 0.836297 | 1.016512e-56 | -8.615850e-47 |
| Msa0334180 | Msa0516340 | 0.807949 | 3.936361e-50 | -8.615850e-47 |
| Msa0334180 | Msa0517400 | 0.804989 | 1.657127e-49 | -8.615850e-47 |
| Msa0334180 | Msa0521100 | 0.821345 | 4.242618e-53 | -8.615850e-47 |
| Msa0334180 | Msa0532910 | 0.804979 | 1.665185e-49 | -8.615850e-47 |
| Msa0334180 | Msa0539900 | 0.807994 | 3.851526e-50 | -8.615850e-47 |
| Msa0334180 | Msa0581190 | 0.810020 | 1.418696e-50 | -8.615850e-47 |
| Msa0334180 | Msa0606680 | 0.838315 | 3.093343e-57 | -8.615850e-47 |
| Msa0334180 | Msa0615850 | 0.810632 | 1.046709e-50 | -8.615850e-47 |
| Msa0334180 | Msa0618260 | 0.810640 | 1.042320e-50 | -8.615850e-47 |
| Msa0334180 | Msa0623360 | 0.801597 | 8.354960e-49 | -8.615850e-47 |
| Msa0334180 | Msa0635470 | 0.803391 | 3.564672e-49 | -8.615850e-47 |
| Msa0334180 | Msa0635990 | 0.817817 | 2.709131e-52 | -8.615850e-47 |
| Msa0334180 | Msa0638040 | 0.808715 | 2.703305e-50 | -8.615850e-47 |
| Msa0334180 | Msa0657820 | 0.814691 | 1.354390e-51 | -8.615850e-47 |
| Msa0334180 | Msa0665040 | 0.813626 | 2.326908e-51 | -8.615850e-47 |
| Msa0334180 | Msa0667710 | 0.804904 | 1.726871e-49 | -8.615850e-47 |
| Msa0334180 | Msa0668000 | 0.803553 | 3.299350e-49 | -8.615850e-47 |
| Msa0334180 | Msa0685880 | 0.816155 | 6.399077e-52 | -8.615850e-47 |
| Msa0334180 | Msa0687320 | 0.833330 | 5.674879e-56 | -8.615850e-47 |
| Msa0334180 | Msa0691180 | 0.803891 | 2.807846e-49 | -8.615850e-47 |
| Msa0334180 | Msa0698900 | 0.814933 | 1.197002e-51 | -8.615850e-47 |
| Msa0334180 | Msa0712440 | 0.826084 | 3.293802e-54 | -8.615850e-47 |
| Msa0334180 | Msa0720850 | 0.815968 | 7.042806e-52 | -8.615850e-47 |
| Msa0334180 | Msa0724490 | 0.815325 | 9.796021e-52 | -8.615850e-47 |
| Msa0334180 | Msa0729590 | 0.830938 | 2.215030e-55 | -8.615850e-47 |
| Msa0334180 | Msa0736930 | 0.818669 | 1.737222e-52 | -8.615850e-47 |
| Msa0334180 | Msa0751000 | 0.824704 | 6.986757e-54 | -8.615850e-47 |
| Msa0334180 | Msa0756410 | 0.813404 | 2.604612e-51 | -8.615850e-47 |
| Msa0334180 | Msa0761930 | 0.803552 | 3.300683e-49 | -8.615850e-47 |
| Msa0334180 | Msa0762390 | 0.818266 | 2.143604e-52 | -8.615850e-47 |
| Msa0334180 | Msa0762470 | 0.813156 | 2.951834e-51 | -8.615850e-47 |
| Msa0334180 | Msa0765020 | 0.835148 | 1.986460e-56 | -8.615850e-47 |
| Msa0334180 | Msa0765040 | 0.825589 | 4.315814e-54 | -8.615850e-47 |
| Msa0334180 | Msa0766880 | 0.820854 | 5.504771e-53 | -8.615850e-47 |
| Msa0334180 | Msa0772400 | 0.811628 | 6.365787e-51 | -8.615850e-47 |
| Msa0334180 | Msa0796610 | 0.801609 | 8.305450e-49 | -8.615850e-47 |
| Msa0334180 | Msa0815950 | 0.837024 | 6.631594e-57 | -8.615850e-47 |
| Msa0334180 | Msa0822800 | 0.801888 | 7.278692e-49 | -8.615850e-47 |
| Msa0334180 | Msa0833910 | 0.809293 | 2.032491e-50 | -8.615850e-47 |
| Msa0334180 | Msa0834160 | 0.822137 | 2.782059e-53 | -8.615850e-47 |
| Msa0334180 | Msa0834250 | 0.802031 | 6.802577e-49 | -8.615850e-47 |
| Msa0334180 | Msa0836200 | 0.809076 | 2.261955e-50 | -8.615850e-47 |
| Msa0334180 | Msa0837590 | 0.816566 | 5.176743e-52 | -8.615850e-47 |
| Msa0334180 | Msa0839730 | 0.811235 | 7.747517e-51 | -8.615850e-47 |
| Msa0334180 | Msa0841980 | 0.834176 | 3.486712e-56 | -8.615850e-47 |
| Msa0334180 | Msa0844350 | 0.843883 | 1.065366e-58 | -8.615850e-47 |
| Msa0334180 | Msa0861480 | 0.816744 | 4.722475e-52 | -8.615850e-47 |
| Msa0334180 | Msa0861560 | 0.840504 | 8.358181e-58 | -8.615850e-47 |
| Msa0334180 | Msa0868040 | 0.853060 | 3.065847e-61 | -8.615850e-47 |
| Msa0334180 | Msa0883410 | 0.801285 | 9.678671e-49 | -8.615850e-47 |
| Msa0334180 | Msa0883690 | 0.804153 | 2.476396e-49 | -8.615850e-47 |
| Msa0334180 | Msa0883700 | 0.807954 | 3.927666e-50 | -8.615850e-47 |
| Msa0334180 | Msa0981300 | 0.806641 | 7.454670e-50 | -8.615850e-47 |
| Msa0334180 | Msa0984840 | 0.815562 | 8.677463e-52 | -8.615850e-47 |
| Msa0334180 | Msa0985040 | 0.817982 | 2.485647e-52 | -8.615850e-47 |
| Msa0334180 | Msa0985430 | 0.802596 | 5.205868e-49 | -8.615850e-47 |
| Msa0334180 | Msa0986620 | 0.804068 | 2.579412e-49 | -8.615850e-47 |
| Msa0334180 | Msa0998940 | 0.800759 | 1.239637e-48 | -8.615850e-47 |
| Msa0334180 | Msa1016110 | 0.807598 | 4.674935e-50 | -8.615850e-47 |
| Msa0334180 | Msa1016130 | 0.850225 | 1.948040e-60 | -8.615850e-47 |
| Msa0334180 | Msa1028210 | 0.804973 | 1.670645e-49 | -8.615850e-47 |
| Msa0334180 | Msa1031220 | 0.814251 | 1.694559e-51 | -8.615850e-47 |
| Msa0334180 | Msa1038820 | 0.801134 | 1.038866e-48 | -8.615850e-47 |
| Msa0334180 | Msa1041550 | 0.812845 | 3.454200e-51 | -8.615850e-47 |
| Msa0334180 | Msa1044330 | 0.812684 | 3.745110e-51 | -8.615850e-47 |
| Msa0334180 | Msa1050320 | 0.820717 | 5.919352e-53 | -8.615850e-47 |
| Msa0334180 | Msa1071310 | 0.835608 | 1.519722e-56 | -8.615850e-47 |
| Msa0334180 | Msa1072640 | 0.810728 | 9.976096e-51 | -8.615850e-47 |
| Msa0334180 | Msa1081530 | 0.800402 | 1.465561e-48 | -8.615850e-47 |
| Msa0334180 | Msa1083850 | 0.815561 | 8.677829e-52 | -8.615850e-47 |
| Msa0334180 | Msa1102180 | 0.805565 | 1.255677e-49 | -8.615850e-47 |
| Msa0334180 | Msa1102200 | 0.825239 | 5.224245e-54 | -8.615850e-47 |
| Msa0334180 | Msa1117830 | 0.809308 | 2.017719e-50 | -8.615850e-47 |
| Msa0334180 | Msa1124180 | 0.822647 | 2.118620e-53 | -8.615850e-47 |
| Msa0334180 | Msa1124440 | 0.804239 | 2.376736e-49 | -8.615850e-47 |
| Msa0334180 | Msa1138730 | 0.802278 | 6.052031e-49 | -8.615850e-47 |
| Msa0334180 | Msa1161520 | 0.833972 | 3.921260e-56 | -8.615850e-47 |
| Msa0334180 | Msa1166020 | 0.805345 | 1.396406e-49 | -8.615850e-47 |
| Msa0334180 | Msa1166450 | 0.810759 | 9.823472e-51 | -8.615850e-47 |
| Msa0334180 | Msa1173410 | 0.816849 | 4.474237e-52 | -8.615850e-47 |
| Msa0334180 | Msa1182400 | 0.820612 | 6.257106e-53 | -8.615850e-47 |
| Msa0334180 | Msa1186010 | 0.822718 | 2.039485e-53 | -8.615850e-47 |
| Msa0334180 | Msa1188380 | 0.841153 | 5.646392e-58 | -8.615850e-47 |
| Msa0334180 | Msa1188820 | 0.856779 | 2.554598e-62 | -8.615850e-47 |
| Msa0334180 | Msa1199690 | 0.844821 | 5.961442e-59 | -8.615850e-47 |
| Msa0334180 | Msa1203090 | 0.818539 | 1.859772e-52 | -8.615850e-47 |
| Msa0334180 | Msa1203840 | 0.835033 | 2.123921e-56 | -8.615850e-47 |
| Msa0334180 | Msa1203860 | 0.818687 | 1.720863e-52 | -8.615850e-47 |
| Msa0334180 | Msa1208250 | 0.849973 | 2.292535e-60 | -8.615850e-47 |
| Msa0334180 | Msa1209790 | 0.827194 | 1.789468e-54 | -8.615850e-47 |
| Msa0334180 | Msa1209800 | 0.818426 | 1.972259e-52 | -8.615850e-47 |
| Msa0334180 | Msa1216700 | 0.804746 | 1.863236e-49 | -8.615850e-47 |
| Msa0334180 | Msa1224690 | 0.808282 | 3.344162e-50 | -8.615850e-47 |
| Msa0334180 | Msa1228280 | 0.813596 | 2.362183e-51 | -8.615850e-47 |
| Msa0334180 | Msa1228330 | 0.809544 | 1.795281e-50 | -8.615850e-47 |
| Msa0334180 | Msa1230190 | 0.811459 | 6.926752e-51 | -8.615850e-47 |
| Msa0334180 | Msa1242430 | 0.832875 | 7.366127e-56 | -8.615850e-47 |
| Msa0334180 | Msa1242990 | 0.846752 | 1.783268e-59 | -8.615850e-47 |
| Msa0334180 | Msa1258200 | 0.834850 | 2.361778e-56 | -8.615850e-47 |
| Msa0334180 | Msa1272770 | 0.803510 | 3.368860e-49 | -8.615850e-47 |
| Msa0334180 | Msa1276070 | 0.809796 | 1.585399e-50 | -8.615850e-47 |
| Msa0334180 | Msa1279240 | 0.841788 | 3.841914e-58 | -8.615850e-47 |
| Msa0334180 | Msa1284390 | 0.817976 | 2.493987e-52 | -8.615850e-47 |
| Msa0334180 | Msa1297540 | 0.821151 | 4.702403e-53 | -8.615850e-47 |
| Msa0334180 | Msa1306700 | 0.805297 | 1.429021e-49 | -8.615850e-47 |
| Msa0334180 | Msa1308460 | 0.816818 | 4.545699e-52 | -8.615850e-47 |
| Msa0334180 | Msa1323920 | 0.814291 | 1.660257e-51 | -8.615850e-47 |
| Msa0334180 | Msa1330910 | 0.815389 | 9.480474e-52 | -8.615850e-47 |
| Msa0334180 | Msa1333430 | 0.800442 | 1.438298e-48 | -8.615850e-47 |
| Msa0334180 | Msa1336350 | 0.828038 | 1.122799e-54 | -8.615850e-47 |
| Msa0334180 | Msa1342400 | 0.801084 | 1.063881e-48 | -8.615850e-47 |
| Msa0334180 | Msa1344080 | 0.828934 | 6.820005e-55 | -8.615850e-47 |
| Msa0334180 | Msa1344610 | 0.834805 | 2.424157e-56 | -8.615850e-47 |
| Msa0334180 | Msa1346540 | 0.849273 | 3.594038e-60 | -8.615850e-47 |
| Msa0334180 | Msa1351380 | 0.807428 | 5.079911e-50 | -8.615850e-47 |
| Msa0334180 | Msa1357380 | 0.848396 | 6.293793e-60 | -8.615850e-47 |
| Msa0334180 | Msa1357720 | 0.809170 | 2.160049e-50 | -8.615850e-47 |
| Msa0334180 | Msa1366700 | 0.857815 | 1.262100e-62 | -8.615850e-47 |
| Msa0334180 | Msa1368180 | 0.803250 | 3.812703e-49 | -8.615850e-47 |
| Msa0334180 | Msa1368800 | 0.800682 | 1.285456e-48 | -8.615850e-47 |
| Msa0334180 | Msa1384980 | 0.845661 | 3.533259e-59 | -8.615850e-47 |
| Msa0334180 | Msa1385580 | 0.812754 | 3.615792e-51 | -8.615850e-47 |
| Msa0334180 | Msa1385940 | 0.826612 | 2.465874e-54 | -8.615850e-47 |
| Msa0334180 | Msa1388070 | 0.813764 | 2.169875e-51 | -8.615850e-47 |
| Msa0334180 | Msa1393600 | 0.828735 | 7.621427e-55 | -8.615850e-47 |
| Msa0334180 | Msa1396310 | 0.801318 | 9.527513e-49 | -8.615850e-47 |
| Msa0334180 | Msa1397110 | 0.811382 | 7.198033e-51 | -8.615850e-47 |
| Msa0334180 | Msa1400600 | 0.810119 | 1.350439e-50 | -8.615850e-47 |
| Msa0334180 | Msa1403900 | 0.802589 | 5.222218e-49 | -8.615850e-47 |
| Msa0334180 | Msa1407200 | 0.802721 | 4.904244e-49 | -8.615850e-47 |
| Msa0334180 | Msa1408190 | 0.838057 | 3.605731e-57 | -8.615850e-47 |
| Msa0334180 | Msa1409050 | 0.816105 | 6.562836e-52 | -8.615850e-47 |
| Msa0334180 | Msa1409760 | 0.807359 | 5.254668e-50 | -8.615850e-47 |
| Msa0334180 | Msa1420630 | 0.803039 | 4.217047e-49 | -8.615850e-47 |
| Msa0334180 | Msa1425110 | 0.813316 | 2.722551e-51 | -8.615850e-47 |
| Msa0334180 | Msa1425570 | 0.802215 | 6.236122e-49 | -8.615850e-47 |
| Msa0334180 | Msa1432250 | 0.814632 | 1.395721e-51 | -8.615850e-47 |
| Msa0334180 | Msa1443440 | 0.804241 | 2.374644e-49 | -8.615850e-47 |
| Msa0334180 | Msa1448990 | 0.838871 | 2.222048e-57 | -8.615850e-47 |
| Msa0334180 | Msa1450420 | 0.829280 | 5.622813e-55 | -8.615850e-47 |
| Msa0334180 | Msa1450850 | 0.802219 | 6.224967e-49 | -8.615850e-47 |
| Msa0334180 | Msa1454940 | 0.800663 | 1.296621e-48 | -8.615850e-47 |
| Msa0334180 | Msa1463500 | 0.803862 | 2.846892e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0334180 | MtrunA17_Chr2g0318131 | 91.453 | 351 | 14 | 4 | 1 | 338 | 1 | 348 | 0.0 | 620 |
| Msa0334180 | MtrunA17_Chr2g0324001 | 76.606 | 218 | 51 | 0 | 121 | 338 | 77 | 294 | 5.22e-131 | 377 |
| Msa0334180 | MtrunA17_Chr6g0465041 | 23.926 | 163 | 124 | 0 | 170 | 332 | 56 | 218 | 6.16e-15 | 73.2 |
| Msa0334180 | MtrunA17_Chr1g0187331 | 28.333 | 180 | 123 | 5 | 167 | 343 | 9 | 185 | 8.48e-15 | 72.0 |
| Msa0334180 | MtrunA17_Chr1g0207521 | 24.706 | 170 | 125 | 1 | 170 | 336 | 85 | 254 | 2.62e-13 | 68.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0334180 | AT1G52870.2 | 62.570 | 358 | 111 | 7 | 2 | 346 | 4 | 351 | 1.22e-157 | 446 |
| Msa0334180 | AT4G03410.2 | 75.000 | 228 | 57 | 0 | 111 | 338 | 72 | 299 | 9.76e-135 | 388 |
| Msa0334180 | AT4G03410.1 | 75.000 | 228 | 57 | 0 | 111 | 338 | 72 | 299 | 1.43e-134 | 386 |
| Msa0334180 | AT1G52870.1 | 59.810 | 316 | 102 | 7 | 2 | 306 | 4 | 305 | 1.97e-129 | 372 |
| Msa0334180 | AT4G33905.1 | 25.316 | 158 | 118 | 0 | 170 | 327 | 86 | 243 | 3.18e-13 | 69.3 |
| Msa0334180 | AT2G14860.1 | 26.471 | 170 | 122 | 1 | 170 | 336 | 77 | 246 | 4.59e-13 | 68.6 |
| Msa0334180 | AT5G43140.1 | 23.313 | 163 | 125 | 0 | 170 | 332 | 82 | 244 | 4.61e-13 | 68.6 |
| Msa0334180 | AT4G14305.1 | 24.855 | 173 | 124 | 5 | 167 | 336 | 9 | 178 | 5.86e-11 | 61.2 |
Find 90 sgRNAs with CRISPR-Local
Find 202 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAGATATGATAGAGCTTATT+TGG | 0.132143 | 2_4:-52397147 | Msa0334180:CDS |
| CTAACATACATGAATTTCTT+AGG | 0.138333 | 2_4:+52396144 | None:intergenic |
| TTACTATTGATAGTGATTAT+TGG | 0.193346 | 2_4:-52398849 | Msa0334180:CDS |
| CGGTGCGCTGGACCTTAATT+TGG | 0.229107 | 2_4:-52396232 | Msa0334180:three_prime_UTR |
| AGGTCAAAATTGTGTATATA+TGG | 0.272639 | 2_4:-52395987 | Msa0334180:three_prime_UTR |
| CGCTGGACCTTAATTTGGTT+TGG | 0.284224 | 2_4:-52396227 | Msa0334180:three_prime_UTR |
| GCTAGTATTGTTCTTGTTGC+TGG | 0.288636 | 2_4:-52398895 | Msa0334180:CDS |
| GATAGAAAAGATTATTATAA+TGG | 0.338922 | 2_4:-52396266 | Msa0334180:CDS |
| CAGTTGAGCAAAGACTTCTT+TGG | 0.344032 | 2_4:-52397171 | Msa0334180:CDS |
| TCTATGTCCAAACCAAATTA+AGG | 0.351514 | 2_4:+52396220 | None:intergenic |
| CTTGTTGGATTTGCTCTACA+TGG | 0.353651 | 2_4:-52397683 | Msa0334180:CDS |
| AATTCATTGAAAATATTGAT+TGG | 0.360409 | 2_4:+52397405 | None:intergenic |
| TAGGATTCATTCTGTTAAAC+AGG | 0.364327 | 2_4:-52396007 | Msa0334180:three_prime_UTR |
| ATAAACTTACGTTGAAAGTA+TGG | 0.377879 | 2_4:+52397120 | None:intergenic |
| ACGACGCAAGTGAATGGATT+TGG | 0.380452 | 2_4:-52399033 | Msa0334180:CDS |
| AAACTGCATGGTCGGCAGTT+TGG | 0.384594 | 2_4:-52397473 | Msa0334180:CDS |
| CTAAGAAATTCATGTATGTT+AGG | 0.387434 | 2_4:-52396143 | Msa0334180:three_prime_UTR |
| ACACAACTGGTTAGCTTATG+AGG | 0.392465 | 2_4:-52397946 | Msa0334180:CDS |
| TGATCGAAGGCAACTTTGAC+TGG | 0.394081 | 2_4:+52397495 | None:intergenic |
| CAAAGAAGTCTTTGCTCAAC+TGG | 0.399250 | 2_4:+52397172 | None:intergenic |
| TATTACAATGCAGTCGAGAT+AGG | 0.404494 | 2_4:-52396026 | Msa0334180:three_prime_UTR |
| TGAGAAATTCTCATCATTTG+TGG | 0.410915 | 2_4:+52395924 | None:intergenic |
| AATGATGAGAATTTCTCAAT+TGG | 0.415255 | 2_4:-52395919 | Msa0334180:three_prime_UTR |
| TTGTTTATTCTGTAGGAGAC+TGG | 0.418497 | 2_4:-52397875 | Msa0334180:CDS |
| AGATATGATAGAGCTTATTT+GGG | 0.418869 | 2_4:-52397146 | Msa0334180:CDS |
| GAATTTCTCAATTGGCTGCT+TGG | 0.420419 | 2_4:-52395911 | Msa0334180:three_prime_UTR |
| TATGGTCTACCTCACAAAAC+TGG | 0.429644 | 2_4:+52397639 | None:intergenic |
| TGAACAATTACATTGTGTAA+TGG | 0.437531 | 2_4:+52396097 | None:intergenic |
| TCACTATCAAACCTTCTTGC+TGG | 0.438486 | 2_4:+52399100 | None:intergenic |
| AGTTGAGCAAAGACTTCTTT+GGG | 0.441026 | 2_4:-52397170 | Msa0334180:CDS |
| CGTGCACGGATGTTCAGATC+AGG | 0.450132 | 2_4:-52397707 | Msa0334180:CDS |
| TTGCCAAGATGGTGATTAGC+GGG | 0.450889 | 2_4:-52397899 | Msa0334180:CDS |
| TTTGCTCATCTAATAACTTA+CGG | 0.455935 | 2_4:-52397202 | Msa0334180:CDS |
| TTAGTGGAGAATCTTGATAC+TGG | 0.460029 | 2_4:+52399213 | None:intergenic |
| TAACATACATGAATTTCTTA+GGG | 0.463410 | 2_4:+52396145 | None:intergenic |
| AGCATTTACTATACAGTTGT+GGG | 0.481625 | 2_4:-52397447 | Msa0334180:CDS |
| GCGACGACGACGCAAGTGAA+TGG | 0.485519 | 2_4:-52399039 | Msa0334180:CDS |
| TGAAGAGAATGTGGAGAGTG+TGG | 0.488302 | 2_4:-52398944 | Msa0334180:CDS |
| GATATGCACCTCTACACAAC+TGG | 0.490397 | 2_4:-52397959 | Msa0334180:CDS |
| AATGGATTTGGAGCGAATGA+AGG | 0.492577 | 2_4:-52399021 | Msa0334180:CDS |
| TCGAGTGCTTCGGGTTTGGT+TGG | 0.494003 | 2_4:-52398976 | Msa0334180:CDS |
| GAGAAATTCTCATCATTTGT+GGG | 0.494268 | 2_4:+52395925 | None:intergenic |
| TAAGTTATTAGATGAGCAAA+TGG | 0.497633 | 2_4:+52397205 | None:intergenic |
| GAATGAAGTTCACGGTGCGC+TGG | 0.500228 | 2_4:-52396244 | Msa0334180:exon |
| ACTACCCACCATCCTTTGTA+AGG | 0.501278 | 2_4:+52397519 | None:intergenic |
| AGCTATTTCCTTACAAAGGA+TGG | 0.507459 | 2_4:-52397527 | Msa0334180:CDS |
| TGATTATTGCAGTGCTTCGA+AGG | 0.509560 | 2_4:-52397752 | Msa0334180:intron |
| ATGTTCAGATCAGGGCTTGT+TGG | 0.511574 | 2_4:-52397698 | Msa0334180:CDS |
| AACCCCGCTAATCACCATCT+TGG | 0.520776 | 2_4:+52397896 | None:intergenic |
| GAAGGTTTGTTATCGTTGGA+AGG | 0.524445 | 2_4:-52399003 | Msa0334180:CDS |
| AGCGGGGTTGTTTATTCTGT+AGG | 0.524576 | 2_4:-52397882 | Msa0334180:CDS |
| CAGCATTTACTATACAGTTG+TGG | 0.531133 | 2_4:-52397448 | Msa0334180:CDS |
| TTACATTGTGTAATGGCTAC+AGG | 0.540618 | 2_4:+52396104 | None:intergenic |
| TTATAATGGAATGAAGTTCA+CGG | 0.545579 | 2_4:-52396252 | Msa0334180:exon |
| GGAAGCTCTCAAGACAAATC+CGG | 0.548802 | 2_4:-52397925 | Msa0334180:CDS |
| CTTCGATCAAACTGCATGGT+CGG | 0.558882 | 2_4:-52397481 | Msa0334180:CDS |
| GAGGAAAGTGTGGTGAGGTA+CGG | 0.563573 | 2_4:+52399287 | None:intergenic |
| GAATGAAGGTTTGTTATCGT+TGG | 0.563825 | 2_4:-52399007 | Msa0334180:CDS |
| GGAATCAGAGATGACCGAGT+TGG | 0.575580 | 2_4:-52395966 | Msa0334180:three_prime_UTR |
| TACAGGCAGGATGGAAGTTG+TGG | 0.575586 | 2_4:-52397228 | Msa0334180:intron |
| CAGGAGCTATTTCCTTACAA+AGG | 0.576904 | 2_4:-52397531 | Msa0334180:CDS |
| TATTTCCTTACAAAGGATGG+TGG | 0.578819 | 2_4:-52397524 | Msa0334180:CDS |
| AGGTTCTCTTACAGTCAACA+TGG | 0.583530 | 2_4:+52397365 | None:intergenic |
| GATATTACAGACCAGCAAGA+AGG | 0.585948 | 2_4:-52399111 | Msa0334180:intron |
| AGGTGGAGATGGTGAATTAG+CGG | 0.589212 | 2_4:-52399061 | Msa0334180:CDS |
| TTTGCCAAGATGGTGATTAG+CGG | 0.591010 | 2_4:-52397900 | Msa0334180:CDS |
| ACTTTCTTATACAGGCAGGA+TGG | 0.595260 | 2_4:-52397237 | Msa0334180:intron |
| CGACCATGCAGTTTGATCGA+AGG | 0.598693 | 2_4:+52397482 | None:intergenic |
| TCAGAGATGACCGAGTTGGA+TGG | 0.598805 | 2_4:-52395962 | Msa0334180:three_prime_UTR |
| TAATGAGAATGAAGAGAATG+TGG | 0.602012 | 2_4:-52398953 | Msa0334180:CDS |
| TGTAGGAGACTGGATTGCAC+AGG | 0.610678 | 2_4:-52397865 | Msa0334180:intron |
| TTGGTTTGGAAATTGAAGGG+AGG | 0.611704 | 2_4:+52399268 | None:intergenic |
| ATTTCCTTACAAAGGATGGT+GGG | 0.611721 | 2_4:-52397523 | Msa0334180:CDS |
| GTGGAGATGGAAGGTGGAGA+TGG | 0.619496 | 2_4:-52399072 | Msa0334180:intron |
| GTGAGGTACGGTGCTGTGAA+CGG | 0.621994 | 2_4:+52399299 | None:intergenic |
| TAAGCTAACCAGTTGTGTAG+AGG | 0.623564 | 2_4:+52397951 | None:intergenic |
| GGTTCTCTTACAGTCAACAT+GGG | 0.640571 | 2_4:+52397366 | None:intergenic |
| GTGCACGGATGTTCAGATCA+GGG | 0.649536 | 2_4:-52397706 | Msa0334180:CDS |
| TTGCCTTCGATCAAACTGCA+TGG | 0.649875 | 2_4:-52397485 | Msa0334180:CDS |
| GAGATGACCGAGTTGGATGG+TGG | 0.657799 | 2_4:-52395959 | Msa0334180:three_prime_UTR |
| GAATTTCACAAAACGTGCAG+CGG | 0.660249 | 2_4:-52399187 | Msa0334180:CDS |
| GTATGAACCACCATCCAACT+CGG | 0.664029 | 2_4:+52395952 | None:intergenic |
| GAAGGGAGGAAAGTGTGGTG+AGG | 0.665797 | 2_4:+52399282 | None:intergenic |
| TGCCAAGATGGTGATTAGCG+GGG | 0.667655 | 2_4:-52397898 | Msa0334180:CDS |
| GCATTTACTATACAGTTGTG+GGG | 0.671450 | 2_4:-52397446 | Msa0334180:CDS |
| AAATTGAAGGGAGGAAAGTG+TGG | 0.672436 | 2_4:+52399277 | None:intergenic |
| TGATTGGAGAATCAAAACGC+AGG | 0.680696 | 2_4:+52397421 | None:intergenic |
| GGTAGCGACGAAAGTATCAA+CGG | 0.696411 | 2_4:-52399166 | Msa0334180:CDS |
| GTTCTCTTACAGTCAACATG+GGG | 0.723534 | 2_4:+52397367 | None:intergenic |
| AGCGACGAAAGTATCAACGG+AGG | 0.758121 | 2_4:-52399163 | Msa0334180:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTAAAAAAAAAAAAAAAA+AGG | + | chr2_4:52398868-52398887 | None:intergenic | 0.0% |
| !! | AAAATAAAAACATAAAGCAA+AGG | + | chr2_4:52396576-52396595 | None:intergenic | 15.0% |
| !! | AATTCATTGAAAATATTGAT+TGG | + | chr2_4:52397792-52397811 | None:intergenic | 15.0% |
| !!! | GTTAAAAAGCATTTATATTA+TGG | - | chr2_4:52398840-52398859 | Msa0334180:intron | 15.0% |
| !! | GATAGAAAAGATTATTATAA+TGG | - | chr2_4:52398928-52398947 | Msa0334180:CDS | 15.0% |
| !!! | TTACTATTGATAGTGATTAT+TGG | - | chr2_4:52396345-52396364 | Msa0334180:intron | 20.0% |
| !! | GATTTGGAAATGATTAAATT+TGG | - | chr2_4:52396443-52396462 | Msa0334180:intron | 20.0% |
| !!! | AATTTGCAATTTTATAGACT+AGG | - | chr2_4:52396491-52396510 | Msa0334180:intron | 20.0% |
| !!! | CAACTTTAAATTAGCTTATA+AGG | + | chr2_4:52397046-52397065 | None:intergenic | 20.0% |
| !!! | CTTATAAGCTAATTTAAAGT+TGG | - | chr2_4:52397044-52397063 | Msa0334180:intron | 20.0% |
| !!! | CAATATTTTCAATGAATTGA+AGG | - | chr2_4:52397794-52397813 | Msa0334180:intron | 20.0% |
| !! | ATGATAAACACTTATCTATA+TGG | - | chr2_4:52398220-52398239 | Msa0334180:intron | 20.0% |
| !!! | AATCTTTTCATATATTTACC+AGG | - | chr2_4:52398885-52398904 | Msa0334180:CDS | 20.0% |
| !! | TAACATACATGAATTTCTTA+GGG | + | chr2_4:52399052-52399071 | None:intergenic | 20.0% |
| !!! | ATTTTGGTTTGGAAATTGAA+GGG | + | chr2_4:52395932-52395951 | None:intergenic | 25.0% |
| !!! | AATGGATTTTGATTTTGGTT+TGG | + | chr2_4:52395943-52395962 | None:intergenic | 25.0% |
| !!! | TTGGAAATGGATTTTGATTT+TGG | + | chr2_4:52395948-52395967 | None:intergenic | 25.0% |
| ! | GTAAACTTCTCATCAAAATT+AGG | - | chr2_4:52396816-52396835 | Msa0334180:intron | 25.0% |
| !! | AAATATTTTTCCATACGCAT+TGG | + | chr2_4:52396902-52396921 | None:intergenic | 25.0% |
| ! | CGTATGGAAAAATATTTGTT+TGG | - | chr2_4:52396905-52396924 | Msa0334180:intron | 25.0% |
| !! | CACGTTTAAATTAGCTTATT+TGG | + | chr2_4:52397089-52397108 | None:intergenic | 25.0% |
| ! | TCAAGATAATCAAATTTGAC+TGG | + | chr2_4:52397145-52397164 | None:intergenic | 25.0% |
| !! | ATTACCATTTATTTGTTGCA+TGG | - | chr2_4:52397859-52397878 | Msa0334180:intron | 25.0% |
| ! | TTCCTTAAACTTTCTTATAC+AGG | - | chr2_4:52397949-52397968 | Msa0334180:CDS | 25.0% |
| ! | TAAGTTATTAGATGAGCAAA+TGG | + | chr2_4:52397992-52398011 | None:intergenic | 25.0% |
| ! | TTTGCTCATCTAATAACTTA+CGG | - | chr2_4:52397992-52398011 | Msa0334180:intron | 25.0% |
| ! | TAGATATGATAGAGCTTATT+TGG | - | chr2_4:52398047-52398066 | Msa0334180:intron | 25.0% |
| ! | AGATATGATAGAGCTTATTT+GGG | - | chr2_4:52398048-52398067 | Msa0334180:intron | 25.0% |
| ! | ATAAACTTACGTTGAAAGTA+TGG | + | chr2_4:52398077-52398096 | None:intergenic | 25.0% |
| ! | AACACTTAATCAATTAGTGT+AGG | + | chr2_4:52398197-52398216 | None:intergenic | 25.0% |
| !! | TTATAATGGAATGAAGTTCA+CGG | - | chr2_4:52398942-52398961 | Msa0334180:CDS | 25.0% |
| ! | CTAACATACATGAATTTCTT+AGG | + | chr2_4:52399053-52399072 | None:intergenic | 25.0% |
| ! | CTAAGAAATTCATGTATGTT+AGG | - | chr2_4:52399051-52399070 | Msa0334180:CDS | 25.0% |
| ! | TGAACAATTACATTGTGTAA+TGG | + | chr2_4:52399100-52399119 | None:intergenic | 25.0% |
| ! | AGGTCAAAATTGTGTATATA+TGG | - | chr2_4:52399207-52399226 | Msa0334180:CDS | 25.0% |
| ! | AATGATGAGAATTTCTCAAT+TGG | - | chr2_4:52399275-52399294 | Msa0334180:CDS | 25.0% |
| !!! | GATTTTGGTTTGGAAATTGA+AGG | + | chr2_4:52395933-52395952 | None:intergenic | 30.0% |
| !! | TTTTGTGAAATTCGGATTAG+TGG | + | chr2_4:52396000-52396019 | None:intergenic | 30.0% |
| TAATGAGAATGAAGAGAATG+TGG | - | chr2_4:52396241-52396260 | Msa0334180:three_prime_UTR | 30.0% | |
| GATTAAATTTGGTTGTACTG+TGG | - | chr2_4:52396454-52396473 | Msa0334180:intron | 30.0% | |
| TATTATTCATAAGCTTGTCG+AGG | + | chr2_4:52396685-52396704 | None:intergenic | 30.0% | |
| AAAAACTAAGCCAATCCAAA+CGG | - | chr2_4:52396747-52396766 | Msa0334180:intron | 30.0% | |
| !!! | CGAAGAACTATACTTTTTCT+TGG | + | chr2_4:52397008-52397027 | None:intergenic | 30.0% |
| CAAATTTGACTGGATATACA+GGG | + | chr2_4:52397135-52397154 | None:intergenic | 30.0% | |
| TCAAATTTGACTGGATATAC+AGG | + | chr2_4:52397136-52397155 | None:intergenic | 30.0% | |
| ! | TGAATTTTTCCTTATCTGCT+AGG | - | chr2_4:52397162-52397181 | Msa0334180:CDS | 30.0% |
| !! | TTACTATTACCAGTTTTGTG+AGG | - | chr2_4:52397546-52397565 | Msa0334180:intron | 30.0% |
| GGAAAAGAACATTGTTCATA+TGG | + | chr2_4:52397576-52397595 | None:intergenic | 30.0% | |
| ATTCAAGAACAATGCAAGAA+AGG | + | chr2_4:52397597-52397616 | None:intergenic | 30.0% | |
| TTCTTGAATTGTCTGACTTA+TGG | - | chr2_4:52397608-52397627 | Msa0334180:intron | 30.0% | |
| ATGGAGATATGCTAATTAAG+TGG | - | chr2_4:52397627-52397646 | Msa0334180:intron | 30.0% | |
| AGCATTTACTATACAGTTGT+GGG | - | chr2_4:52397747-52397766 | Msa0334180:intron | 30.0% | |
| AATAAATGGTAATAGCCAGA+AGG | + | chr2_4:52397852-52397871 | None:intergenic | 30.0% | |
| GTTTCCATGCAACAAATAAA+TGG | + | chr2_4:52397866-52397885 | None:intergenic | 30.0% | |
| TGCCTGTATAAGAAAGTTTA+AGG | + | chr2_4:52397954-52397973 | None:intergenic | 30.0% | |
| TTAAACTTTCTTATACAGGC+AGG | - | chr2_4:52397953-52397972 | Msa0334180:CDS | 30.0% | |
| ACTTTCAACGTAAGTTTATC+TGG | - | chr2_4:52398078-52398097 | Msa0334180:intron | 30.0% | |
| ACTATACAATTTCTCCTAGA+TGG | + | chr2_4:52398132-52398151 | None:intergenic | 30.0% | |
| TCATACTCAAAGATAGAATG+TGG | - | chr2_4:52398248-52398267 | Msa0334180:intron | 30.0% | |
| ! | ACTTGTGTTTTGTGATTGTT+TGG | + | chr2_4:52398388-52398407 | None:intergenic | 30.0% |
| ! | AAAGGAGCATACAGTTTATT+TGG | + | chr2_4:52398659-52398678 | None:intergenic | 30.0% |
| ! | CAATGGATATTTGCTAAGTT+TGG | - | chr2_4:52398818-52398837 | Msa0334180:intron | 30.0% |
| TCTATGTCCAAACCAAATTA+AGG | + | chr2_4:52398977-52398996 | None:intergenic | 30.0% | |
| TAGGATTCATTCTGTTAAAC+AGG | - | chr2_4:52399187-52399206 | Msa0334180:CDS | 30.0% | |
| GAGAAATTCTCATCATTTGT+GGG | + | chr2_4:52399272-52399291 | None:intergenic | 30.0% | |
| TGAGAAATTCTCATCATTTG+TGG | + | chr2_4:52399273-52399292 | None:intergenic | 30.0% | |
| !! | AAAGTTTTGTGGCTTGGAAA+TGG | + | chr2_4:52395961-52395980 | None:intergenic | 35.0% |
| ! | CTTGATACTGGAAAGTTTTG+TGG | + | chr2_4:52395972-52395991 | None:intergenic | 35.0% |
| TTAGTGGAGAATCTTGATAC+TGG | + | chr2_4:52395984-52396003 | None:intergenic | 35.0% | |
| !! | GAATGAAGGTTTGTTATCGT+TGG | - | chr2_4:52396187-52396206 | Msa0334180:three_prime_UTR | 35.0% |
| TGTGTGTGATTCTTTGGATT+TGG | - | chr2_4:52396427-52396446 | Msa0334180:intron | 35.0% | |
| ! | TGCAATTTTATAGACTAGGC+TGG | - | chr2_4:52396495-52396514 | Msa0334180:intron | 35.0% |
| ! | GCAATTTTATAGACTAGGCT+GGG | - | chr2_4:52396496-52396515 | Msa0334180:intron | 35.0% |
| !!! | GTTTTTAGCGTATGCAAAAC+TGG | + | chr2_4:52396733-52396752 | None:intergenic | 35.0% |
| AATCACTATACCGTTTGGAT+TGG | + | chr2_4:52396760-52396779 | None:intergenic | 35.0% | |
| TCCAAACGGTATAGTGATTA+TGG | - | chr2_4:52396761-52396780 | Msa0334180:intron | 35.0% | |
| TTAGGTCATAGTTACCAACT+TGG | - | chr2_4:52396834-52396853 | Msa0334180:intron | 35.0% | |
| TAGTCTATACATTTGCATGC+AGG | - | chr2_4:52396972-52396991 | Msa0334180:intron | 35.0% | |
| AGTCTATACATTTGCATGCA+GGG | - | chr2_4:52396973-52396992 | Msa0334180:intron | 35.0% | |
| GGCTAATCTAAATTAGCAAC+TGG | + | chr2_4:52397114-52397133 | None:intergenic | 35.0% | |
| AACACAAATCCTAGCAGATA+AGG | + | chr2_4:52397174-52397193 | None:intergenic | 35.0% | |
| TTGTTTATTCTGTAGGAGAC+TGG | - | chr2_4:52397319-52397338 | Msa0334180:intron | 35.0% | |
| TTTCATATACAGCTGAGTCT+CGG | - | chr2_4:52397371-52397390 | Msa0334180:intron | 35.0% | |
| ! | CAATCTTTTATCATGCACTG+TGG | - | chr2_4:52397407-52397426 | Msa0334180:CDS | 35.0% |
| !!! | TTTTTGAGTTTGATCGTGCA+CGG | - | chr2_4:52397473-52397492 | Msa0334180:CDS | 35.0% |
| ! | AGCTATTTCCTTACAAAGGA+TGG | - | chr2_4:52397667-52397686 | Msa0334180:CDS | 35.0% |
| TATTTCCTTACAAAGGATGG+TGG | - | chr2_4:52397670-52397689 | Msa0334180:CDS | 35.0% | |
| ATTTCCTTACAAAGGATGGT+GGG | - | chr2_4:52397671-52397690 | Msa0334180:CDS | 35.0% | |
| CAGCATTTACTATACAGTTG+TGG | - | chr2_4:52397746-52397765 | Msa0334180:intron | 35.0% | |
| GCATTTACTATACAGTTGTG+GGG | - | chr2_4:52397748-52397767 | Msa0334180:intron | 35.0% | |
| AGTTGAGCAAAGACTTCTTT+GGG | - | chr2_4:52398024-52398043 | Msa0334180:intron | 35.0% | |
| ! | CTGCATAGAATTTTCCATCT+AGG | - | chr2_4:52398115-52398134 | Msa0334180:intron | 35.0% |
| ATGTGTGAAAATGCACAGTA+TGG | - | chr2_4:52398165-52398184 | Msa0334180:intron | 35.0% | |
| AGCACTTGATCAATTAGTGT+AGG | + | chr2_4:52398431-52398450 | None:intergenic | 35.0% | |
| ! | ATATCTCTTCTTTTCACTCC+TGG | + | chr2_4:52398906-52398925 | None:intergenic | 35.0% |
| TTACATTGTGTAATGGCTAC+AGG | + | chr2_4:52399093-52399112 | None:intergenic | 35.0% | |
| TATTACAATGCAGTCGAGAT+AGG | - | chr2_4:52399168-52399187 | Msa0334180:CDS | 35.0% | |
| AAATTGAAGGGAGGAAAGTG+TGG | + | chr2_4:52395920-52395939 | None:intergenic | 40.0% | |
| !! | TTGGTTTGGAAATTGAAGGG+AGG | + | chr2_4:52395929-52395948 | None:intergenic | 40.0% |
| !! | TACTGGAAAGTTTTGTGGCT+TGG | + | chr2_4:52395967-52395986 | None:intergenic | 40.0% |
| ! | GCTGCACGTTTTGTGAAATT+CGG | + | chr2_4:52396008-52396027 | None:intergenic | 40.0% |
| GAATTTCACAAAACGTGCAG+CGG | - | chr2_4:52396007-52396026 | Msa0334180:three_prime_UTR | 40.0% | |
| GATATTACAGACCAGCAAGA+AGG | - | chr2_4:52396083-52396102 | Msa0334180:three_prime_UTR | 40.0% | |
| TCACTATCAAACCTTCTTGC+TGG | + | chr2_4:52396097-52396116 | None:intergenic | 40.0% | |
| ! | AATGGATTTGGAGCGAATGA+AGG | - | chr2_4:52396173-52396192 | Msa0334180:three_prime_UTR | 40.0% |
| !! | GAAGGTTTGTTATCGTTGGA+AGG | - | chr2_4:52396191-52396210 | Msa0334180:three_prime_UTR | 40.0% |
| GCTAGTATTGTTCTTGTTGC+TGG | - | chr2_4:52396299-52396318 | Msa0334180:intron | 40.0% | |
| TGTGTGTGTGTGTGATTCTT+TGG | - | chr2_4:52396421-52396440 | Msa0334180:intron | 40.0% | |
| TTTATAGACTAGGCTGGGTT+TGG | - | chr2_4:52396501-52396520 | Msa0334180:intron | 40.0% | |
| GCCATAATCACTATACCGTT+TGG | + | chr2_4:52396765-52396784 | None:intergenic | 40.0% | |
| GCTAGAAATCGACACAAACT+TGG | + | chr2_4:52396787-52396806 | None:intergenic | 40.0% | |
| !! | GTTTGTGTCGATTTCTAGCT+TGG | - | chr2_4:52396788-52396807 | Msa0334180:intron | 40.0% |
| TATACATTTGCATGCAGGGA+GGG | - | chr2_4:52396977-52396996 | Msa0334180:intron | 40.0% | |
| CTGCTAGGATTTGTGTTTCT+TGG | - | chr2_4:52397177-52397196 | Msa0334180:CDS | 40.0% | |
| !! | TGTGTTTCTTGGTGCTATGT+AGG | - | chr2_4:52397188-52397207 | Msa0334180:CDS | 40.0% |
| !! | GTGTTTCTTGGTGCTATGTA+GGG | - | chr2_4:52397189-52397208 | Msa0334180:CDS | 40.0% |
| TAAGCTAACCAGTTGTGTAG+AGG | + | chr2_4:52397246-52397265 | None:intergenic | 40.0% | |
| !! | ACACAACTGGTTAGCTTATG+AGG | - | chr2_4:52397248-52397267 | Msa0334180:intron | 40.0% |
| ! | AAATCCGGTTTTTGCCAAGA+TGG | - | chr2_4:52397284-52397303 | Msa0334180:intron | 40.0% |
| ATCACCATCTTGGCAAAAAC+CGG | + | chr2_4:52397291-52397310 | None:intergenic | 40.0% | |
| TTTGCCAAGATGGTGATTAG+CGG | - | chr2_4:52397294-52397313 | Msa0334180:intron | 40.0% | |
| !! | TTCGAAGCACTGCAATAATC+AGG | + | chr2_4:52397443-52397462 | None:intergenic | 40.0% |
| TGATTATTGCAGTGCTTCGA+AGG | - | chr2_4:52397442-52397461 | Msa0334180:CDS | 40.0% | |
| GCACGATCAAACTCAAAAAG+AGG | + | chr2_4:52397472-52397491 | None:intergenic | 40.0% | |
| ! | CTTGTTGGATTTGCTCTACA+TGG | - | chr2_4:52397511-52397530 | Msa0334180:CDS | 40.0% |
| TATGGTCTACCTCACAAAAC+TGG | + | chr2_4:52397558-52397577 | None:intergenic | 40.0% | |
| ATAGCTCCTGGATAAATGAG+AGG | + | chr2_4:52397653-52397672 | None:intergenic | 40.0% | |
| CTTTGTAAGGAAATAGCTCC+TGG | + | chr2_4:52397665-52397684 | None:intergenic | 40.0% | |
| ! | CAGGAGCTATTTCCTTACAA+AGG | - | chr2_4:52397663-52397682 | Msa0334180:CDS | 40.0% |
| TGATTGGAGAATCAAAACGC+AGG | + | chr2_4:52397776-52397795 | None:intergenic | 40.0% | |
| GTTCTCTTACAGTCAACATG+GGG | + | chr2_4:52397830-52397849 | None:intergenic | 40.0% | |
| GGTTCTCTTACAGTCAACAT+GGG | + | chr2_4:52397831-52397850 | None:intergenic | 40.0% | |
| AGGTTCTCTTACAGTCAACA+TGG | + | chr2_4:52397832-52397851 | None:intergenic | 40.0% | |
| TTGACTGTAAGAGAACCTTC+TGG | - | chr2_4:52397834-52397853 | Msa0334180:intron | 40.0% | |
| !! | ATTCTTTTTCTGAGAGCCAG+TGG | - | chr2_4:52397890-52397909 | Msa0334180:CDS | 40.0% |
| CAAGATAATGTTACCACCAC+TGG | + | chr2_4:52397909-52397928 | None:intergenic | 40.0% | |
| ACTTTCTTATACAGGCAGGA+TGG | - | chr2_4:52397957-52397976 | Msa0334180:CDS | 40.0% | |
| CAAAGAAGTCTTTGCTCAAC+TGG | + | chr2_4:52398025-52398044 | None:intergenic | 40.0% | |
| CAGTTGAGCAAAGACTTCTT+TGG | - | chr2_4:52398023-52398042 | Msa0334180:intron | 40.0% | |
| ACTTGTGTCGTGTAACTGTT+TGG | + | chr2_4:52398622-52398641 | None:intergenic | 40.0% | |
| TCCTTTGTATATCTCTGCAG+TGG | - | chr2_4:52398673-52398692 | Msa0334180:intron | 40.0% | |
| ACCACTGCAGAGATATACAA+AGG | + | chr2_4:52398677-52398696 | None:intergenic | 40.0% | |
| !!! | GCTTCTGGTTTTGTGATCAA+TGG | - | chr2_4:52398801-52398820 | Msa0334180:intron | 40.0% |
| GAATTTCTCAATTGGCTGCT+TGG | - | chr2_4:52399283-52399302 | Msa0334180:CDS | 40.0% | |
| !! | GGTAGCGACGAAAGTATCAA+CGG | - | chr2_4:52396028-52396047 | Msa0334180:three_prime_UTR | 45.0% |
| AGGTGGAGATGGTGAATTAG+CGG | - | chr2_4:52396133-52396152 | Msa0334180:three_prime_UTR | 45.0% | |
| ! | ACGACGCAAGTGAATGGATT+TGG | - | chr2_4:52396161-52396180 | Msa0334180:three_prime_UTR | 45.0% |
| !!! | GGAAGGTTTTTCGAGTGCTT+CGG | - | chr2_4:52396208-52396227 | Msa0334180:three_prime_UTR | 45.0% |
| !!! | GAAGGTTTTTCGAGTGCTTC+GGG | - | chr2_4:52396209-52396228 | Msa0334180:three_prime_UTR | 45.0% |
| !!! | TTTTTCGAGTGCTTCGGGTT+TGG | - | chr2_4:52396214-52396233 | Msa0334180:three_prime_UTR | 45.0% |
| TGAAGAGAATGTGGAGAGTG+TGG | - | chr2_4:52396250-52396269 | Msa0334180:exon | 45.0% | |
| !! | ACTTGAGTTGATCGATCCCT+TGG | - | chr2_4:52396876-52396895 | Msa0334180:intron | 45.0% |
| ! | TTTCCATACGCATTGGCCAA+GGG | + | chr2_4:52396895-52396914 | None:intergenic | 45.0% |
| !! | TTTTCCATACGCATTGGCCA+AGG | + | chr2_4:52396896-52396915 | None:intergenic | 45.0% |
| CTATACATTTGCATGCAGGG+AGG | - | chr2_4:52396976-52396995 | Msa0334180:intron | 45.0% | |
| !! | TTCTTGGTGCTATGTAGGGA+TGG | - | chr2_4:52397193-52397212 | Msa0334180:CDS | 45.0% |
| GATATGCACCTCTACACAAC+TGG | - | chr2_4:52397235-52397254 | Msa0334180:intron | 45.0% | |
| GGAAGCTCTCAAGACAAATC+CGG | - | chr2_4:52397269-52397288 | Msa0334180:intron | 45.0% | |
| TTGCCAAGATGGTGATTAGC+GGG | - | chr2_4:52397295-52397314 | Msa0334180:intron | 45.0% | |
| AGCGGGGTTGTTTATTCTGT+AGG | - | chr2_4:52397312-52397331 | Msa0334180:intron | 45.0% | |
| ATGTTCAGATCAGGGCTTGT+TGG | - | chr2_4:52397496-52397515 | Msa0334180:CDS | 45.0% | |
| AAGTGGCCTCTCATTTATCC+AGG | - | chr2_4:52397644-52397663 | Msa0334180:intron | 45.0% | |
| ACTACCCACCATCCTTTGTA+AGG | + | chr2_4:52397678-52397697 | None:intergenic | 45.0% | |
| TGATCGAAGGCAACTTTGAC+TGG | + | chr2_4:52397702-52397721 | None:intergenic | 45.0% | |
| TTGCCTTCGATCAAACTGCA+TGG | - | chr2_4:52397709-52397728 | Msa0334180:CDS | 45.0% | |
| CTTCGATCAAACTGCATGGT+CGG | - | chr2_4:52397713-52397732 | Msa0334180:CDS | 45.0% | |
| !! | TCTCTGCAGTGGTTCTAACA+TGG | - | chr2_4:52398684-52398703 | Msa0334180:intron | 45.0% |
| AGCGAAATCCACTACATCTG+AGG | - | chr2_4:52398772-52398791 | Msa0334180:intron | 45.0% | |
| ! | TCCACTACATCTGAGGTATG+TGG | - | chr2_4:52398779-52398798 | Msa0334180:intron | 45.0% |
| ! | CGCTGGACCTTAATTTGGTT+TGG | - | chr2_4:52398967-52398986 | Msa0334180:CDS | 45.0% |
| GTATGAACCACCATCCAACT+CGG | + | chr2_4:52399245-52399264 | None:intergenic | 45.0% | |
| ! | GAGGAAAGTGTGGTGAGGTA+CGG | + | chr2_4:52395910-52395929 | None:intergenic | 50.0% |
| !! | AGCGACGAAAGTATCAACGG+AGG | - | chr2_4:52396031-52396050 | Msa0334180:three_prime_UTR | 50.0% |
| !! | AGGTTTGATAGTGAGCCGTG+TGG | - | chr2_4:52396103-52396122 | Msa0334180:three_prime_UTR | 50.0% |
| TGCCAAGATGGTGATTAGCG+GGG | - | chr2_4:52397296-52397315 | Msa0334180:intron | 50.0% | |
| AACCCCGCTAATCACCATCT+TGG | + | chr2_4:52397301-52397320 | None:intergenic | 50.0% | |
| TGTAGGAGACTGGATTGCAC+AGG | - | chr2_4:52397329-52397348 | Msa0334180:intron | 50.0% | |
| GTGCACGGATGTTCAGATCA+GGG | - | chr2_4:52397488-52397507 | Msa0334180:CDS | 50.0% | |
| CGACCATGCAGTTTGATCGA+AGG | + | chr2_4:52397715-52397734 | None:intergenic | 50.0% | |
| AAACTGCATGGTCGGCAGTT+TGG | - | chr2_4:52397721-52397740 | Msa0334180:CDS | 50.0% | |
| !! | CTTTTTCTGAGAGCCAGTGG+TGG | - | chr2_4:52397893-52397912 | Msa0334180:CDS | 50.0% |
| TACAGGCAGGATGGAAGTTG+TGG | - | chr2_4:52397966-52397985 | Msa0334180:CDS | 50.0% | |
| GCCACATACCTCAGATGTAG+TGG | + | chr2_4:52398783-52398802 | None:intergenic | 50.0% | |
| ! | CATCTGAGGTATGTGGCTTC+TGG | - | chr2_4:52398786-52398805 | Msa0334180:intron | 50.0% |
| GGAATCAGAGATGACCGAGT+TGG | - | chr2_4:52399228-52399247 | Msa0334180:CDS | 50.0% | |
| ! | TCAGAGATGACCGAGTTGGA+TGG | - | chr2_4:52399232-52399251 | Msa0334180:CDS | 50.0% |
| !! | GTGAGGTACGGTGCTGTGAA+CGG | + | chr2_4:52395898-52395917 | None:intergenic | 55.0% |
| ! | GAAGGGAGGAAAGTGTGGTG+AGG | + | chr2_4:52395915-52395934 | None:intergenic | 55.0% |
| GATAGTGAGCCGTGTGGAGA+TGG | - | chr2_4:52396109-52396128 | Msa0334180:three_prime_UTR | 55.0% | |
| CTCCACCTTCCATCTCCACA+CGG | + | chr2_4:52396121-52396140 | None:intergenic | 55.0% | |
| GTGGAGATGGAAGGTGGAGA+TGG | - | chr2_4:52396122-52396141 | Msa0334180:three_prime_UTR | 55.0% | |
| ! | TCGAGTGCTTCGGGTTTGGT+TGG | - | chr2_4:52396218-52396237 | Msa0334180:three_prime_UTR | 55.0% |
| GATCCCTTGGCCAATGCGTA+TGG | - | chr2_4:52396889-52396908 | Msa0334180:intron | 55.0% | |
| CGTGCACGGATGTTCAGATC+AGG | - | chr2_4:52397487-52397506 | Msa0334180:CDS | 55.0% | |
| GAATGAAGTTCACGGTGCGC+TGG | - | chr2_4:52398950-52398969 | Msa0334180:CDS | 55.0% | |
| CGGTGCGCTGGACCTTAATT+TGG | - | chr2_4:52398962-52398981 | Msa0334180:CDS | 55.0% | |
| ! | GAGATGACCGAGTTGGATGG+TGG | - | chr2_4:52399235-52399254 | Msa0334180:CDS | 55.0% |
| GTGAGCCGTGTGGAGATGGA+AGG | - | chr2_4:52396113-52396132 | Msa0334180:three_prime_UTR | 60.0% | |
| AGCCGTGTGGAGATGGAAGG+TGG | - | chr2_4:52396116-52396135 | Msa0334180:three_prime_UTR | 60.0% | |
| GCGACGACGACGCAAGTGAA+TGG | - | chr2_4:52396155-52396174 | Msa0334180:three_prime_UTR | 60.0% | |
| CCACTCGCGTCACACCAAGT+TGG | + | chr2_4:52396851-52396870 | None:intergenic | 60.0% | |
| !! | CCAACTTGGTGTGACGCGAG+TGG | - | chr2_4:52396848-52396867 | Msa0334180:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 52395888 | 52399328 | 52395888 | ID=Msa0334180;Name=Msa0334180 |
| chr2_4 | mRNA | 52395888 | 52399328 | 52395888 | ID=Msa0334180-mRNA-1;Parent=Msa0334180;Name=Msa0334180-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0|0.66|0.71|1|0.66|0.57|7|373|348 |
| chr2_4 | exon | 52395888 | 52396309 | 52395888 | ID=Msa0334180-mRNA-1:exon:15786;Parent=Msa0334180-mRNA-1 |
| chr2_4 | exon | 52397130 | 52397245 | 52397130 | ID=Msa0334180-mRNA-1:exon:15785;Parent=Msa0334180-mRNA-1 |
| chr2_4 | exon | 52397377 | 52397550 | 52397377 | ID=Msa0334180-mRNA-1:exon:15784;Parent=Msa0334180-mRNA-1 |
| chr2_4 | exon | 52397649 | 52397762 | 52397649 | ID=Msa0334180-mRNA-1:exon:15783;Parent=Msa0334180-mRNA-1 |
| chr2_4 | exon | 52397866 | 52398006 | 52397866 | ID=Msa0334180-mRNA-1:exon:15782;Parent=Msa0334180-mRNA-1 |
| chr2_4 | exon | 52398846 | 52399081 | 52398846 | ID=Msa0334180-mRNA-1:exon:15781;Parent=Msa0334180-mRNA-1 |
| chr2_4 | exon | 52399112 | 52399328 | 52399112 | ID=Msa0334180-mRNA-1:exon:15780;Parent=Msa0334180-mRNA-1 |
| chr2_4 | CDS | 52399112 | 52399328 | 52399112 | ID=Msa0334180-mRNA-1:cds;Parent=Msa0334180-mRNA-1 |
| chr2_4 | CDS | 52398846 | 52399081 | 52398846 | ID=Msa0334180-mRNA-1:cds;Parent=Msa0334180-mRNA-1 |
| chr2_4 | CDS | 52397866 | 52398006 | 52397866 | ID=Msa0334180-mRNA-1:cds;Parent=Msa0334180-mRNA-1 |
| chr2_4 | CDS | 52397649 | 52397762 | 52397649 | ID=Msa0334180-mRNA-1:cds;Parent=Msa0334180-mRNA-1 |
| chr2_4 | CDS | 52397377 | 52397550 | 52397377 | ID=Msa0334180-mRNA-1:cds;Parent=Msa0334180-mRNA-1 |
| chr2_4 | CDS | 52397130 | 52397245 | 52397130 | ID=Msa0334180-mRNA-1:cds;Parent=Msa0334180-mRNA-1 |
| chr2_4 | CDS | 52396261 | 52396309 | 52396261 | ID=Msa0334180-mRNA-1:cds;Parent=Msa0334180-mRNA-1 |
| chr2_4 | three_prime_UTR | 52395888 | 52396260 | 52395888 | ID=Msa0334180-mRNA-1:three_prime_utr;Parent=Msa0334180-mRNA-1 |
| Gene Sequence |
| Protein sequence |
