Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0496570 | XP_003599534.2 | 95.492 | 488 | 22 | 0 | 1 | 488 | 1 | 488 | 0.0 | 964 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0496570 | sp|Q9FFZ1|PPH_ARATH | 69.212 | 419 | 121 | 5 | 66 | 479 | 30 | 445 | 0.0 | 599 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0496570 | G7IZM0 | 95.492 | 488 | 22 | 0 | 1 | 488 | 1 | 488 | 0.0 | 964 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0021980 | Msa0496570 | 0.838129 | 3.454917e-57 | -8.615850e-47 |
| Msa0041780 | Msa0496570 | 0.809520 | 1.817245e-50 | -8.615850e-47 |
| Msa0050320 | Msa0496570 | 0.814616 | 1.407386e-51 | -8.615850e-47 |
| Msa0053480 | Msa0496570 | 0.808488 | 3.021559e-50 | -8.615850e-47 |
| Msa0070090 | Msa0496570 | 0.803473 | 3.427607e-49 | -8.615850e-47 |
| Msa0090350 | Msa0496570 | 0.817074 | 3.981931e-52 | -8.615850e-47 |
| Msa0117300 | Msa0496570 | 0.841272 | 5.254242e-58 | -8.615850e-47 |
| Msa0121480 | Msa0496570 | 0.825145 | 5.499883e-54 | -8.615850e-47 |
| Msa0137810 | Msa0496570 | 0.804578 | 2.020095e-49 | -8.615850e-47 |
| Msa0154720 | Msa0496570 | 0.814890 | 1.223698e-51 | -8.615850e-47 |
| Msa0160650 | Msa0496570 | 0.854114 | 1.526348e-61 | -8.615850e-47 |
| Msa0184030 | Msa0496570 | 0.836121 | 1.126733e-56 | -8.615850e-47 |
| Msa0188500 | Msa0496570 | 0.819435 | 1.162961e-52 | -8.615850e-47 |
| Msa0200870 | Msa0496570 | 0.804385 | 2.216031e-49 | -8.615850e-47 |
| Msa0203180 | Msa0496570 | 0.813455 | 2.537620e-51 | -8.615850e-47 |
| Msa0220410 | Msa0496570 | 0.808021 | 3.800307e-50 | -8.615850e-47 |
| Msa0221940 | Msa0496570 | 0.816222 | 6.179348e-52 | -8.615850e-47 |
| Msa0223190 | Msa0496570 | 0.851968 | 6.278281e-61 | -8.615850e-47 |
| Msa0230980 | Msa0496570 | 0.823250 | 1.532245e-53 | -8.615850e-47 |
| Msa0369750 | Msa0496570 | 0.805852 | 1.093013e-49 | -8.615850e-47 |
| Msa0372990 | Msa0496570 | 0.835197 | 1.930549e-56 | -8.615850e-47 |
| Msa0378670 | Msa0496570 | 0.801094 | 1.058885e-48 | -8.615850e-47 |
| Msa0379720 | Msa0496570 | 0.811542 | 6.644787e-51 | -8.615850e-47 |
| Msa0401570 | Msa0496570 | 0.822689 | 2.071388e-53 | -8.615850e-47 |
| Msa0403720 | Msa0496570 | 0.853121 | 2.946154e-61 | -8.615850e-47 |
| Msa0404180 | Msa0496570 | 0.811679 | 6.205321e-51 | -8.615850e-47 |
| Msa0408160 | Msa0496570 | 0.826917 | 2.084517e-54 | -8.615850e-47 |
| Msa0414010 | Msa0496570 | 0.819456 | 1.150361e-52 | -8.615850e-47 |
| Msa0421390 | Msa0496570 | 0.846244 | 2.453834e-59 | -8.615850e-47 |
| Msa0427050 | Msa0496570 | 0.812603 | 3.901870e-51 | -8.615850e-47 |
| Msa0429130 | Msa0496570 | 0.811692 | 6.164914e-51 | -8.615850e-47 |
| Msa0431940 | Msa0496570 | 0.837243 | 5.831465e-57 | -8.615850e-47 |
| Msa0436600 | Msa0496570 | 0.806184 | 9.302902e-50 | -8.615850e-47 |
| Msa0448400 | Msa0496570 | 0.892552 | 1.428977e-74 | -8.615850e-47 |
| Msa0456480 | Msa0496570 | 0.820219 | 7.699263e-53 | -8.615850e-47 |
| Msa0473450 | Msa0496570 | 0.800156 | 1.645108e-48 | -8.615850e-47 |
| Msa0475360 | Msa0496570 | 0.808494 | 3.012579e-50 | -8.615850e-47 |
| Msa0476730 | Msa0496570 | 0.805903 | 1.066381e-49 | -8.615850e-47 |
| Msa0243820 | Msa0496570 | 0.817017 | 4.100410e-52 | -8.615850e-47 |
| Msa0246300 | Msa0496570 | 0.805842 | 1.098238e-49 | -8.615850e-47 |
| Msa0263520 | Msa0496570 | 0.819292 | 1.253970e-52 | -8.615850e-47 |
| Msa0264240 | Msa0496570 | 0.801112 | 1.049893e-48 | -8.615850e-47 |
| Msa0264420 | Msa0496570 | 0.860878 | 1.519286e-63 | -8.615850e-47 |
| Msa0270460 | Msa0496570 | 0.822888 | 1.861787e-53 | -8.615850e-47 |
| Msa0302310 | Msa0496570 | 0.855539 | 5.895112e-62 | -8.615850e-47 |
| Msa0309060 | Msa0496570 | 0.808505 | 2.997343e-50 | -8.615850e-47 |
| Msa0311330 | Msa0496570 | 0.839983 | 1.143367e-57 | -8.615850e-47 |
| Msa0338670 | Msa0496570 | 0.815658 | 8.257230e-52 | -8.615850e-47 |
| Msa0339340 | Msa0496570 | 0.812056 | 5.136542e-51 | -8.615850e-47 |
| Msa0339560 | Msa0496570 | 0.824638 | 7.243923e-54 | -8.615850e-47 |
| Msa0339670 | Msa0496570 | 0.860394 | 2.129490e-63 | -8.615850e-47 |
| Msa0352640 | Msa0496570 | 0.864659 | 1.037242e-64 | -8.615850e-47 |
| Msa0364010 | Msa0496570 | 0.804150 | 2.480406e-49 | -8.615850e-47 |
| Msa0496460 | Msa0496570 | 0.949905 | 4.922046e-108 | -8.615850e-47 |
| Msa0496470 | Msa0496570 | 0.958569 | 1.703582e-116 | -8.615850e-47 |
| Msa0496570 | Msa0509510 | 0.803172 | 3.958021e-49 | -8.615850e-47 |
| Msa0496570 | Msa0512770 | 0.804645 | 1.956074e-49 | -8.615850e-47 |
| Msa0496570 | Msa0520810 | 0.848224 | 7.023260e-60 | -8.615850e-47 |
| Msa0496570 | Msa0521100 | 0.805041 | 1.616428e-49 | -8.615850e-47 |
| Msa0496570 | Msa0546370 | 0.866858 | 2.096680e-65 | -8.615850e-47 |
| Msa0496570 | Msa0549330 | 0.826531 | 2.577998e-54 | -8.615850e-47 |
| Msa0496570 | Msa0554440 | 0.819239 | 1.289155e-52 | -8.615850e-47 |
| Msa0496570 | Msa0555510 | 0.816119 | 6.516233e-52 | -8.615850e-47 |
| Msa0496570 | Msa0585930 | 0.800875 | 1.173898e-48 | -8.615850e-47 |
| Msa0496570 | Msa0595240 | 0.800522 | 1.385259e-48 | -8.615850e-47 |
| Msa0496570 | Msa0604640 | 0.843114 | 1.709185e-58 | -8.615850e-47 |
| Msa0496570 | Msa0608940 | 0.816681 | 4.878533e-52 | -8.615850e-47 |
| Msa0496570 | Msa0623360 | 0.809509 | 1.827363e-50 | -8.615850e-47 |
| Msa0496570 | Msa0630850 | 0.868999 | 4.300006e-66 | -8.615850e-47 |
| Msa0496570 | Msa0648200 | 0.843417 | 1.419829e-58 | -8.615850e-47 |
| Msa0496570 | Msa0648300 | 0.823154 | 1.613447e-53 | -8.615850e-47 |
| Msa0496570 | Msa0649530 | 0.801114 | 1.048885e-48 | -8.615850e-47 |
| Msa0496570 | Msa0664130 | 0.807021 | 6.194931e-50 | -8.615850e-47 |
| Msa0496570 | Msa0681880 | 0.837750 | 4.321997e-57 | -8.615850e-47 |
| Msa0496570 | Msa0691140 | 0.812325 | 4.488522e-51 | -8.615850e-47 |
| Msa0496570 | Msa0704780 | 0.831099 | 2.022123e-55 | -8.615850e-47 |
| Msa0496570 | Msa0713530 | 0.822273 | 2.586955e-53 | -8.615850e-47 |
| Msa0496570 | Msa0729780 | 0.801983 | 6.959370e-49 | -8.615850e-47 |
| Msa0496570 | Msa0738600 | 0.822279 | 2.578359e-53 | -8.615850e-47 |
| Msa0496570 | Msa0755590 | 0.807874 | 4.083239e-50 | -8.615850e-47 |
| Msa0496570 | Msa0766880 | 0.804216 | 2.402634e-49 | -8.615850e-47 |
| Msa0496570 | Msa0770020 | 0.821582 | 3.739388e-53 | -8.615850e-47 |
| Msa0496570 | Msa0775420 | 0.827081 | 1.905358e-54 | -8.615850e-47 |
| Msa0496570 | Msa0782030 | 0.800463 | 1.424489e-48 | -8.615850e-47 |
| Msa0496570 | Msa0796460 | 0.849995 | 2.259999e-60 | -8.615850e-47 |
| Msa0496570 | Msa0797240 | 0.813528 | 2.445768e-51 | -8.615850e-47 |
| Msa0496570 | Msa0807980 | 0.880305 | 6.122719e-70 | -8.615850e-47 |
| Msa0496570 | Msa0812800 | 0.815425 | 9.305936e-52 | -8.615850e-47 |
| Msa0496570 | Msa0815950 | 0.804199 | 2.422333e-49 | -8.615850e-47 |
| Msa0496570 | Msa0818950 | 0.822510 | 2.279314e-53 | -8.615850e-47 |
| Msa0496570 | Msa0834200 | 0.823215 | 1.561572e-53 | -8.615850e-47 |
| Msa0496570 | Msa0834240 | 0.820020 | 8.552238e-53 | -8.615850e-47 |
| Msa0496570 | Msa0835010 | 0.818362 | 2.039667e-52 | -8.615850e-47 |
| Msa0496570 | Msa0835550 | 0.810296 | 1.237197e-50 | -8.615850e-47 |
| Msa0496570 | Msa0861480 | 0.822505 | 2.285716e-53 | -8.615850e-47 |
| Msa0496570 | Msa0861560 | 0.832466 | 9.304262e-56 | -8.615850e-47 |
| Msa0496570 | Msa0873010 | 0.815510 | 8.909470e-52 | -8.615850e-47 |
| Msa0496570 | Msa0913120 | 0.810232 | 1.276573e-50 | -8.615850e-47 |
| Msa0496570 | Msa0927890 | 0.836510 | 8.971649e-57 | -8.615850e-47 |
| Msa0496570 | Msa0930090 | 0.801036 | 1.087943e-48 | -8.615850e-47 |
| Msa0496570 | Msa0938300 | 0.830237 | 3.288498e-55 | -8.615850e-47 |
| Msa0496570 | Msa0967250 | 0.817875 | 2.627821e-52 | -8.615850e-47 |
| Msa0496570 | Msa0967260 | 0.819687 | 1.019196e-52 | -8.615850e-47 |
| Msa0496570 | Msa0975560 | 0.816244 | 6.110688e-52 | -8.615850e-47 |
| Msa0496570 | Msa0995660 | 0.809151 | 2.180071e-50 | -8.615850e-47 |
| Msa0496570 | Msa0998940 | 0.825972 | 3.501701e-54 | -8.615850e-47 |
| Msa0496570 | Msa1008960 | 0.802153 | 6.422089e-49 | -8.615850e-47 |
| Msa0496570 | Msa1031220 | 0.823295 | 1.495986e-53 | -8.615850e-47 |
| Msa0496570 | Msa1033230 | 0.838771 | 2.359631e-57 | -8.615850e-47 |
| Msa0496570 | Msa1041550 | 0.819629 | 1.050305e-52 | -8.615850e-47 |
| Msa0496570 | Msa1044450 | 0.809706 | 1.657166e-50 | -8.615850e-47 |
| Msa0496570 | Msa1067910 | 0.817424 | 3.321469e-52 | -8.615850e-47 |
| Msa0496570 | Msa1071310 | 0.840593 | 7.919694e-58 | -8.615850e-47 |
| Msa0496570 | Msa1071460 | 0.817990 | 2.476058e-52 | -8.615850e-47 |
| Msa0496570 | Msa1072770 | 0.822095 | 2.844673e-53 | -8.615850e-47 |
| Msa0496570 | Msa1081530 | 0.833226 | 6.021997e-56 | -8.615850e-47 |
| Msa0496570 | Msa1089130 | 0.803376 | 3.590021e-49 | -8.615850e-47 |
| Msa0496570 | Msa1113210 | 0.805511 | 1.288723e-49 | -8.615850e-47 |
| Msa0496570 | Msa1113280 | 0.806376 | 8.476664e-50 | -8.615850e-47 |
| Msa0496570 | Msa1122480 | 0.821591 | 3.721351e-53 | -8.615850e-47 |
| Msa0496570 | Msa1166450 | 0.809574 | 1.769000e-50 | -8.615850e-47 |
| Msa0496570 | Msa1182400 | 0.807908 | 4.017318e-50 | -8.615850e-47 |
| Msa0496570 | Msa1186010 | 0.814882 | 1.228194e-51 | -8.615850e-47 |
| Msa0496570 | Msa1188820 | 0.809949 | 1.469137e-50 | -8.615850e-47 |
| Msa0496570 | Msa1207760 | 0.803159 | 3.982733e-49 | -8.615850e-47 |
| Msa0496570 | Msa1216700 | 0.847497 | 1.114280e-59 | -8.615850e-47 |
| Msa0496570 | Msa1216900 | 0.856044 | 4.196577e-62 | -8.615850e-47 |
| Msa0496570 | Msa1223510 | 0.841281 | 5.227631e-58 | -8.615850e-47 |
| Msa0496570 | Msa1230190 | 0.804887 | 1.740530e-49 | -8.615850e-47 |
| Msa0496570 | Msa1233760 | 0.819127 | 1.367266e-52 | -8.615850e-47 |
| Msa0496570 | Msa1242990 | 0.838066 | 3.584959e-57 | -8.615850e-47 |
| Msa0496570 | Msa1262740 | 0.839072 | 1.971926e-57 | -8.615850e-47 |
| Msa0496570 | Msa1263610 | 0.807061 | 6.074229e-50 | -8.615850e-47 |
| Msa0496570 | Msa1276070 | 0.813172 | 2.927892e-51 | -8.615850e-47 |
| Msa0496570 | Msa1296610 | 0.806420 | 8.297199e-50 | -8.615850e-47 |
| Msa0496570 | Msa1306700 | 0.828617 | 8.138812e-55 | -8.615850e-47 |
| Msa0496570 | Msa1323920 | 0.805735 | 1.156204e-49 | -8.615850e-47 |
| Msa0496570 | Msa1329660 | 0.832897 | 7.271609e-56 | -8.615850e-47 |
| Msa0496570 | Msa1337520 | 0.800216 | 1.599178e-48 | -8.615850e-47 |
| Msa0496570 | Msa1339310 | 0.803028 | 4.237324e-49 | -8.615850e-47 |
| Msa0496570 | Msa1342400 | 0.881668 | 1.981735e-70 | -8.615850e-47 |
| Msa0496570 | Msa1344610 | 0.820281 | 7.453716e-53 | -8.615850e-47 |
| Msa0496570 | Msa1346540 | 0.802591 | 5.215975e-49 | -8.615850e-47 |
| Msa0496570 | Msa1353280 | 0.819515 | 1.115464e-52 | -8.615850e-47 |
| Msa0496570 | Msa1357720 | 0.847197 | 1.346433e-59 | -8.615850e-47 |
| Msa0496570 | Msa1368660 | 0.835876 | 1.299617e-56 | -8.615850e-47 |
| Msa0496570 | Msa1381720 | 0.819365 | 1.206821e-52 | -8.615850e-47 |
| Msa0496570 | Msa1395580 | 0.806845 | 6.750353e-50 | -8.615850e-47 |
| Msa0496570 | Msa1407200 | 0.811573 | 6.544848e-51 | -8.615850e-47 |
| Msa0496570 | Msa1409050 | 0.826966 | 2.029782e-54 | -8.615850e-47 |
| Msa0496570 | Msa1409760 | 0.817903 | 2.590561e-52 | -8.615850e-47 |
| Msa0496570 | Msa1413220 | 0.815207 | 1.040269e-51 | -8.615850e-47 |
| Msa0496570 | Msa1414560 | 0.804191 | 2.431538e-49 | -8.615850e-47 |
| Msa0496570 | Msa1427180 | 0.856704 | 2.687157e-62 | -8.615850e-47 |
| Msa0496570 | Msa1428560 | 0.812638 | 3.833180e-51 | -8.615850e-47 |
| Msa0496570 | Msa1432250 | 0.808312 | 3.294909e-50 | -8.615850e-47 |
| Msa0496570 | Msa1433380 | 0.819971 | 8.776434e-53 | -8.615850e-47 |
| Msa0496570 | Msa1445700 | 0.819197 | 1.318028e-52 | -8.615850e-47 |
| Msa0496570 | Msa1446220 | 0.836044 | 1.178488e-56 | -8.615850e-47 |
| Msa0496570 | Msa1452200 | 0.860792 | 1.613045e-63 | -8.615850e-47 |
| Msa0496570 | Msa1459630 | 0.838715 | 2.438405e-57 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0496570 | MtrunA17_Chr3g0090521 | 95.492 | 488 | 22 | 0 | 1 | 488 | 1 | 488 | 0.0 | 964 |
| Msa0496570 | MtrunA17_Chr8g0372991 | 29.032 | 372 | 209 | 12 | 95 | 456 | 45 | 371 | 1.98e-31 | 124 |
| Msa0496570 | MtrunA17_Chr5g0423381 | 24.923 | 325 | 206 | 9 | 133 | 457 | 61 | 347 | 1.99e-24 | 104 |
| Msa0496570 | MtrunA17_Chr1g0188361 | 24.781 | 343 | 194 | 13 | 129 | 450 | 91 | 390 | 1.03e-20 | 94.0 |
| Msa0496570 | MtrunA17_Chr4g0018641 | 25.938 | 320 | 179 | 10 | 139 | 452 | 411 | 678 | 1.14e-19 | 92.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0496570 | AT5G13800.3 | 69.212 | 419 | 121 | 5 | 66 | 479 | 53 | 468 | 0.0 | 600 |
| Msa0496570 | AT5G13800.2 | 69.212 | 419 | 121 | 5 | 66 | 479 | 30 | 445 | 0.0 | 599 |
| Msa0496570 | AT5G13800.1 | 69.212 | 419 | 121 | 5 | 66 | 479 | 30 | 445 | 0.0 | 599 |
| Msa0496570 | AT5G13800.4 | 70.745 | 376 | 104 | 4 | 66 | 438 | 30 | 402 | 0.0 | 556 |
| Msa0496570 | AT4G36530.1 | 29.942 | 344 | 189 | 12 | 116 | 447 | 2 | 305 | 4.57e-28 | 114 |
| Msa0496570 | AT4G36530.2 | 29.942 | 344 | 189 | 12 | 116 | 447 | 59 | 362 | 1.24e-27 | 114 |
| Msa0496570 | AT5G19850.1 | 25.301 | 332 | 209 | 10 | 116 | 447 | 64 | 356 | 5.02e-23 | 100 |
| Msa0496570 | AT4G25290.1 | 26.444 | 329 | 177 | 11 | 133 | 453 | 402 | 673 | 6.35e-18 | 87.4 |
Find 181 sgRNAs with CRISPR-Local
Find 302 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCATCTTTCACTAAATTTA+AGG | 0.072939 | 3_4:+27659303 | Msa0496570:five_prime_UTR |
| TCACTACACAACACATATTT+TGG | 0.112509 | 3_4:+27663094 | Msa0496570:three_prime_UTR |
| ACAAATAATTGCAAGATAAA+TGG | 0.152678 | 3_4:-27662746 | None:intergenic |
| ACACTTAAACGAACATTTCT+AGG | 0.161206 | 3_4:+27662512 | Msa0496570:three_prime_UTR |
| TTGTGTATTCGGTTGATTTA+TGG | 0.184371 | 3_4:+27660245 | Msa0496570:CDS |
| CACTAAAAGACTCAAATTTA+AGG | 0.189165 | 3_4:+27659781 | Msa0496570:CDS |
| TCATAATGAACATTCAATTT+AGG | 0.203184 | 3_4:-27659965 | None:intergenic |
| GAAAAGGGTCATCAACAAAA+TGG | 0.210823 | 3_4:+27659731 | Msa0496570:CDS |
| CTAACTCTCTTTCAATAGTT+TGG | 0.243271 | 3_4:-27662239 | None:intergenic |
| ATCAATAATCTTTACACAAT+TGG | 0.245251 | 3_4:+27659692 | Msa0496570:CDS |
| CATTCAATTAATGATGTATA+TGG | 0.247704 | 3_4:-27663156 | None:intergenic |
| AGTTATGGTGATTATGTTAT+TGG | 0.253348 | 3_4:+27659815 | Msa0496570:CDS |
| GAATCGTAATTGGCAGATTC+AGG | 0.254674 | 3_4:-27662684 | None:intergenic |
| GTTAATATTGAGGCTATATA+AGG | 0.267351 | 3_4:+27662306 | Msa0496570:CDS |
| TATGGGGACTTCAGGTTAAA+AGG | 0.267598 | 3_4:+27661650 | Msa0496570:CDS |
| AATGTTTCGCCTTGGGGTTT+TGG | 0.273427 | 3_4:+27660193 | Msa0496570:CDS |
| ATCCTTGGGTGACACCTATA+TGG | 0.274359 | 3_4:+27661632 | Msa0496570:CDS |
| GCGTTAGTTGTTATAATATT+AGG | 0.275628 | 3_4:-27659244 | None:intergenic |
| GAGAAGCAGCTGATGGATTT+AGG | 0.281263 | 3_4:+27660064 | Msa0496570:CDS |
| TCAGCCTTACCATGAATTCT+TGG | 0.282592 | 3_4:-27662610 | None:intergenic |
| GCAGGGCTGATTTGATAATA+AGG | 0.317228 | 3_4:-27661688 | None:intergenic |
| CACACCGAAACAATTTATAT+TGG | 0.328149 | 3_4:-27663028 | None:intergenic |
| GTCAGTTTCTTTATATTTGA+AGG | 0.331884 | 3_4:-27661013 | None:intergenic |
| ATTTGATAATAAGGAGCTTC+AGG | 0.341340 | 3_4:-27661679 | None:intergenic |
| AATAAAATTCCAAGAATTCA+TGG | 0.348072 | 3_4:+27662601 | Msa0496570:three_prime_UTR |
| CTCAAATTTAAGGTTAATAG+TGG | 0.351895 | 3_4:+27659791 | Msa0496570:CDS |
| GATGAAGGAAGAGATATTGT+AGG | 0.356457 | 3_4:+27659842 | Msa0496570:CDS |
| GAGTGGAAATGTTTCGCCTT+GGG | 0.357128 | 3_4:+27660186 | Msa0496570:CDS |
| GGCGACTGAGCTTGTGTATT+CGG | 0.358843 | 3_4:+27660234 | Msa0496570:CDS |
| AGATCCTGCTCCTTTGTCTA+AGG | 0.359553 | 3_4:+27660147 | Msa0496570:CDS |
| CCGAAACAATTTATATTGGC+TGG | 0.369052 | 3_4:-27663024 | None:intergenic |
| GCTCCTTTGTCTAAGGTAGA+AGG | 0.380700 | 3_4:+27660154 | Msa0496570:CDS |
| CCAGCCAATATAAATTGTTT+CGG | 0.384546 | 3_4:+27663024 | Msa0496570:three_prime_UTR |
| CTCTAAACTATTGTATTCCT+TGG | 0.392833 | 3_4:+27659214 | Msa0496570:five_prime_UTR |
| AGAACATAGTTGCTAAGAAA+TGG | 0.393122 | 3_4:+27659544 | Msa0496570:intron |
| GAAATGGAAACTCTTTCATA+TGG | 0.395108 | 3_4:+27659560 | Msa0496570:exon |
| GCTGAAGGATAATTCTCCTT+GGG | 0.395504 | 3_4:-27661467 | None:intergenic |
| TACTCTTAATCAGTTTCAAA+TGG | 0.398144 | 3_4:-27663059 | None:intergenic |
| TCAATAATCTTTACACAATT+GGG | 0.398675 | 3_4:+27659693 | Msa0496570:CDS |
| AATATCATGTAAGATGTTGT+TGG | 0.401386 | 3_4:+27663289 | Msa0496570:three_prime_UTR |
| GTCATAAATTTCTTACTTCG+TGG | 0.404663 | 3_4:+27662147 | Msa0496570:CDS |
| GGACAACCCCTGTGCTCATT+CGG | 0.406801 | 3_4:-27662724 | None:intergenic |
| CAAATAATTGCAAGATAAAT+GGG | 0.406951 | 3_4:-27662745 | None:intergenic |
| CGCTGAAGGATAATTCTCCT+TGG | 0.410914 | 3_4:-27661468 | None:intergenic |
| GACACCTATATGGGGACTTC+AGG | 0.417003 | 3_4:+27661642 | Msa0496570:CDS |
| TTCGGGATGCTAATGGTAGA+TGG | 0.418475 | 3_4:-27662916 | None:intergenic |
| GTCATCAACAAAATGGGTTT+AGG | 0.419697 | 3_4:+27659738 | Msa0496570:CDS |
| GCAAATGAGGCTGCAGCAGC+AGG | 0.429355 | 3_4:-27661427 | None:intergenic |
| CTCCTCTTTGATGACATCTC+TGG | 0.429599 | 3_4:-27662545 | None:intergenic |
| TTAACCTGAAGTCCCCATAT+AGG | 0.431257 | 3_4:-27661646 | None:intergenic |
| CTCCTTTGTCTAAGGTAGAA+GGG | 0.432227 | 3_4:+27660155 | Msa0496570:CDS |
| TTAATATTGAGGCTATATAA+GGG | 0.435336 | 3_4:+27662307 | Msa0496570:CDS |
| TCCTTGGGTGACACCTATAT+GGG | 0.437100 | 3_4:+27661633 | Msa0496570:CDS |
| ATGAAGGAAGAGATATTGTA+GGG | 0.437799 | 3_4:+27659843 | Msa0496570:CDS |
| GGGATGTGGAGGCCTACTTC+GGG | 0.441144 | 3_4:-27662933 | None:intergenic |
| TGTATGGAAAAGAAGATCCT+TGG | 0.446455 | 3_4:+27661617 | Msa0496570:CDS |
| CGGGATGTGGAGGCCTACTT+CGG | 0.447509 | 3_4:-27662934 | None:intergenic |
| GATGAATCTAACGGTGAATC+CGG | 0.449227 | 3_4:+27659908 | Msa0496570:CDS |
| TCATGAGGGCAGTGACCAGC+AGG | 0.450163 | 3_4:-27661706 | None:intergenic |
| ATTTATGGCAAGATCAAGTT+CGG | 0.451015 | 3_4:+27660260 | Msa0496570:CDS |
| AAGGTTAATAGTGGAAGTTA+TGG | 0.452518 | 3_4:+27659800 | Msa0496570:CDS |
| TTCTTTATATTTGAAGGTAG+AGG | 0.455798 | 3_4:-27661007 | None:intergenic |
| GGTGAACCAGTCTATATTGT+AGG | 0.458199 | 3_4:+27660824 | Msa0496570:CDS |
| TTTCCATACATGAGGCAAAT+CGG | 0.458829 | 3_4:-27661604 | None:intergenic |
| CGAGTGGAAATGTTTCGCCT+TGG | 0.459293 | 3_4:+27660185 | Msa0496570:CDS |
| GTGCCGATTTGCCTCATGTA+TGG | 0.462283 | 3_4:+27661601 | Msa0496570:CDS |
| TACAATAGTTTAGAGTTGCT+TGG | 0.463091 | 3_4:-27659206 | None:intergenic |
| GTTTGAATTCAACTCAATCA+AGG | 0.466524 | 3_4:+27659636 | Msa0496570:CDS |
| TAAATTTCTTACTTCGTGGA+TGG | 0.469086 | 3_4:+27662151 | Msa0496570:CDS |
| AATGGAGATCGCTCGGGATG+TGG | 0.470202 | 3_4:-27662947 | None:intergenic |
| GGCCTACTTCGGGATGCTAA+TGG | 0.472436 | 3_4:-27662923 | None:intergenic |
| AAGCTCAGTCGCCCACGGTT+CGG | 0.472964 | 3_4:-27660224 | None:intergenic |
| TATGTACCTTGGTCTAGAGT+TGG | 0.473264 | 3_4:-27662834 | None:intergenic |
| AAAAGGGTCATCAACAAAAT+GGG | 0.477906 | 3_4:+27659732 | Msa0496570:CDS |
| ACCTTGGTCTAGAGTTGGCT+TGG | 0.478134 | 3_4:-27662829 | None:intergenic |
| GTTACACCTTTCACTAAATG+AGG | 0.478531 | 3_4:-27660893 | None:intergenic |
| GACTTGCCAAAGTATTTCCA+TGG | 0.484178 | 3_4:+27660972 | Msa0496570:CDS |
| TCCGGCCCATGGAAATACTT+TGG | 0.486998 | 3_4:-27660978 | None:intergenic |
| GGTTGATGTACCTGCTTCAA+AGG | 0.488420 | 3_4:+27659865 | Msa0496570:CDS |
| CCAAATCCAGTAAAATCTCC+TGG | 0.491222 | 3_4:+27660950 | Msa0496570:CDS |
| TATTATCAAATCAGCCCTGC+TGG | 0.491907 | 3_4:+27661691 | Msa0496570:CDS |
| TATTCATTAAATGATGTATG+TGG | 0.494312 | 3_4:+27663120 | Msa0496570:three_prime_UTR |
| TGAAGGTAGAGGGAATGTTC+CGG | 0.494970 | 3_4:-27660996 | None:intergenic |
| TGAATACGCCGAATGAGCAC+AGG | 0.502692 | 3_4:+27662716 | Msa0496570:three_prime_UTR |
| ACAAATTTGTTACAGGTCAT+CGG | 0.503439 | 3_4:+27660803 | Msa0496570:intron |
| CGCAGATCATTCCATAAATG+TGG | 0.503615 | 3_4:+27661366 | Msa0496570:CDS |
| GCCAAAGTATTTCCATGGGC+CGG | 0.503917 | 3_4:+27660977 | Msa0496570:CDS |
| CCTTGATAATGTTTCGCTGA+AGG | 0.506677 | 3_4:-27661482 | None:intergenic |
| GTATGGAAAAGAAGATCCTT+GGG | 0.512378 | 3_4:+27661618 | Msa0496570:CDS |
| GACTATTGAGCTCACTAGGA+GGG | 0.512591 | 3_4:+27662567 | Msa0496570:three_prime_UTR |
| TCTTTATATTTGAAGGTAGA+GGG | 0.516316 | 3_4:-27661006 | None:intergenic |
| AATTATACACGTTAATATTG+AGG | 0.517297 | 3_4:+27662296 | Msa0496570:CDS |
| TATGTTATTGGTGAAGATGA+AGG | 0.519558 | 3_4:+27659827 | Msa0496570:CDS |
| GGAAATACTTTGGCAAGTCC+AGG | 0.521700 | 3_4:-27660968 | None:intergenic |
| AGAGGGAATGTTCCGGCCCA+TGG | 0.525112 | 3_4:-27660989 | None:intergenic |
| CAAAGAGAATGGAGATCGCT+CGG | 0.525647 | 3_4:-27662954 | None:intergenic |
| GTCATCTAATGTGGGACGAA+GGG | 0.528762 | 3_4:+27663426 | Msa0496570:three_prime_UTR |
| AAAGGAGCAGGATCTTCAAA+AGG | 0.528883 | 3_4:-27660139 | None:intergenic |
| ATTCATGGTAAGGCTGAAGT+TGG | 0.528984 | 3_4:+27662616 | Msa0496570:three_prime_UTR |
| TCAATTATGTTTGCTCCCCA+AGG | 0.529087 | 3_4:+27661451 | Msa0496570:CDS |
| ATCAACTAGGTCATCTAATG+TGG | 0.530908 | 3_4:+27663417 | Msa0496570:three_prime_UTR |
| AAACATAATTGAAGCAAATG+AGG | 0.531154 | 3_4:-27661440 | None:intergenic |
| CAAAGATAAAACATATGCAT+TGG | 0.531450 | 3_4:+27663381 | Msa0496570:three_prime_UTR |
| AGAGAGAGCCATCAGACTCT+AGG | 0.533108 | 3_4:-27662182 | None:intergenic |
| GATTCACCGTTAGATTCATC+CGG | 0.533130 | 3_4:-27659905 | None:intergenic |
| AAGGCAACAGAAGTGCTGAT+TGG | 0.533885 | 3_4:-27662643 | None:intergenic |
| CCTTCAGCGAAACATTATCA+AGG | 0.535892 | 3_4:+27661482 | Msa0496570:CDS |
| ATCAAGTGATTAATCGACTT+CGG | 0.537049 | 3_4:+27662394 | Msa0496570:three_prime_UTR |
| TGCTCTTCATGCAGAGATGT+GGG | 0.538996 | 3_4:-27662858 | None:intergenic |
| ATGCTCTTCATGCAGAGATG+TGG | 0.540602 | 3_4:-27662859 | None:intergenic |
| CTAGAGTTGGCTTGGAGAGA+CGG | 0.541610 | 3_4:-27662821 | None:intergenic |
| CTCAAAGTTGCTTATTGACA+TGG | 0.542492 | 3_4:-27662771 | None:intergenic |
| AATGTTCATTATGAGAAAGC+TGG | 0.544928 | 3_4:+27659974 | Msa0496570:CDS |
| AGGAGACTATTGAGCTCACT+AGG | 0.545584 | 3_4:+27662563 | Msa0496570:three_prime_UTR |
| TGCTATCCTCATTTAGTGAA+AGG | 0.545914 | 3_4:+27660887 | Msa0496570:CDS |
| TCATTATGAGAAGCAGCTGA+TGG | 0.547861 | 3_4:+27660057 | Msa0496570:CDS |
| AGTGGAAATGTTTCGCCTTG+GGG | 0.549038 | 3_4:+27660187 | Msa0496570:CDS |
| GGGACTTCAGGTTAAAAGGA+AGG | 0.555835 | 3_4:+27661654 | Msa0496570:CDS |
| TACCATTAGCATCCCGAAGT+AGG | 0.560571 | 3_4:+27662921 | Msa0496570:three_prime_UTR |
| AGTTTGATCCATCCCTCTTG+AGG | 0.560705 | 3_4:+27662995 | Msa0496570:three_prime_UTR |
| ACCCCTTCTACCTTAGACAA+AGG | 0.561060 | 3_4:-27660157 | None:intergenic |
| GATGGAGCGTGCAAAGAGAA+TGG | 0.561488 | 3_4:-27662965 | None:intergenic |
| GGAAATATCCTCAAGAGGGA+TGG | 0.561845 | 3_4:-27663003 | None:intergenic |
| TGCAGCAGCAGGATGTCTTG+TGG | 0.564810 | 3_4:-27661416 | None:intergenic |
| TCCTTTGTCTAAGGTAGAAG+GGG | 0.565381 | 3_4:+27660156 | Msa0496570:CDS |
| AATTCCAAGAATTCATGGTA+AGG | 0.568355 | 3_4:+27662606 | Msa0496570:three_prime_UTR |
| GAAAGCTGGTTGTGAAAATG+TGG | 0.570001 | 3_4:+27659988 | Msa0496570:CDS |
| TGGATCAAACTCAATTGTGA+TGG | 0.572331 | 3_4:-27662983 | None:intergenic |
| GGAATCAAAACCTTTGAAGC+AGG | 0.573711 | 3_4:-27659875 | None:intergenic |
| AAAGAACCAACACCGAAACC+CGG | 0.578498 | 3_4:-27660034 | None:intergenic |
| TATAAAGAAACTGACAGAGT+TGG | 0.579225 | 3_4:+27661021 | Msa0496570:CDS |
| GTTCATCACACTTTGAGAGA+AGG | 0.579524 | 3_4:-27662662 | None:intergenic |
| TGGAGATGAAACCGAACCGT+GGG | 0.590049 | 3_4:+27660213 | Msa0496570:CDS |
| AAAGAGAATGGAGATCGCTC+GGG | 0.590090 | 3_4:-27662953 | None:intergenic |
| GAATTGCCTACAATATAGAC+TGG | 0.590145 | 3_4:-27660830 | None:intergenic |
| GTGTCTATTTCTTCAAGCAG+AGG | 0.590583 | 3_4:-27662210 | None:intergenic |
| AGTTCGGTACTTCATTGAAG+AGG | 0.593978 | 3_4:+27660276 | Msa0496570:CDS |
| GGCTGGAAATATCCTCAAGA+GGG | 0.593979 | 3_4:-27663007 | None:intergenic |
| GGAGATCGCTCGGGATGTGG+AGG | 0.594063 | 3_4:-27662944 | None:intergenic |
| TTAGATTCATCCGGTAAACC+AGG | 0.594608 | 3_4:-27659896 | None:intergenic |
| GCTAATGGTAGATGGATCAA+AGG | 0.596502 | 3_4:-27662908 | None:intergenic |
| GGTCATCTAATGTGGGACGA+AGG | 0.597265 | 3_4:+27663425 | Msa0496570:three_prime_UTR |
| GAATACGCCGAATGAGCACA+GGG | 0.597473 | 3_4:+27662717 | Msa0496570:three_prime_UTR |
| CTCCAGAGATGTCATCAAAG+AGG | 0.598418 | 3_4:+27662543 | Msa0496570:three_prime_UTR |
| TCTACCTTAGACAAAGGAGC+AGG | 0.601953 | 3_4:-27660151 | None:intergenic |
| CATCACAAGCGCCAATCTTG+CGG | 0.603601 | 3_4:+27662879 | Msa0496570:three_prime_UTR |
| ACCTCAGGGACTTCGTCATG+AGG | 0.613786 | 3_4:-27661721 | None:intergenic |
| TCAACTAGGTCATCTAATGT+GGG | 0.614583 | 3_4:+27663418 | Msa0496570:three_prime_UTR |
| CCTCAGGGACTTCGTCATGA+GGG | 0.615846 | 3_4:-27661720 | None:intergenic |
| GTAGAAGGGGTTATGTCGAG+TGG | 0.616320 | 3_4:+27660169 | Msa0496570:CDS |
| ACAACTACTTATCACCGCAC+CGG | 0.616475 | 3_4:-27659927 | None:intergenic |
| TGGCTGGAAATATCCTCAAG+AGG | 0.619018 | 3_4:-27663008 | None:intergenic |
| GAGATGTGGGGTATGTACCT+TGG | 0.623830 | 3_4:-27662845 | None:intergenic |
| ACTTGCCAAAGTATTTCCAT+GGG | 0.623837 | 3_4:+27660973 | Msa0496570:CDS |
| ATTAGAAACCTAGAGTCTGA+TGG | 0.625268 | 3_4:+27662174 | Msa0496570:CDS |
| TAATATTAGGAACAGATCCA+AGG | 0.626290 | 3_4:-27659231 | None:intergenic |
| ACTATTGAGCTCACTAGGAG+GGG | 0.626318 | 3_4:+27662568 | Msa0496570:three_prime_UTR |
| ATTGTAGGCAATTCACTAGG+AGG | 0.628400 | 3_4:+27660839 | Msa0496570:CDS |
| TAATATTGAGGCTATATAAG+GGG | 0.631977 | 3_4:+27662308 | Msa0496570:exon |
| GTTTCATCTCCAAAACCCCA+AGG | 0.634038 | 3_4:-27660202 | None:intergenic |
| TACACAAGCTCAGTCGCCCA+CGG | 0.634556 | 3_4:-27660229 | None:intergenic |
| CCCCATATAGGTGTCACCCA+AGG | 0.637101 | 3_4:-27661634 | None:intergenic |
| TTGGAGATGAAACCGAACCG+TGG | 0.642794 | 3_4:+27660212 | Msa0496570:CDS |
| TGTCATCTATTGAGAGACGG+AGG | 0.644261 | 3_4:-27663196 | None:intergenic |
| ATATGTCATCTATTGAGAGA+CGG | 0.645508 | 3_4:-27663199 | None:intergenic |
| TATATTGTAGGCAATTCACT+AGG | 0.646604 | 3_4:+27660836 | Msa0496570:CDS |
| GTCATCTATTGAGAGACGGA+GGG | 0.647747 | 3_4:-27663195 | None:intergenic |
| GTGTTCATAACTTGACAACA+TGG | 0.649898 | 3_4:-27659590 | None:intergenic |
| CCCTCATGACGAAGTCCCTG+AGG | 0.650741 | 3_4:+27661720 | Msa0496570:CDS |
| CTGAAGGATAATTCTCCTTG+GGG | 0.654826 | 3_4:-27661466 | None:intergenic |
| TGAAGGAAGAGATATTGTAG+GGG | 0.662501 | 3_4:+27659844 | Msa0496570:CDS |
| GGTTTACCGGATGAATCTAA+CGG | 0.662912 | 3_4:+27659899 | Msa0496570:CDS |
| TACATGTGTCGAAATCAACT+AGG | 0.665214 | 3_4:+27663404 | Msa0496570:three_prime_UTR |
| CATGAGGGCAGTGACCAGCA+GGG | 0.666303 | 3_4:-27661705 | None:intergenic |
| AGACTATTGAGCTCACTAGG+AGG | 0.666771 | 3_4:+27662566 | Msa0496570:three_prime_UTR |
| CACTAAATGAGGATAGCATG+CGG | 0.675326 | 3_4:-27660882 | None:intergenic |
| TCCAAGCCAACTCTAGACCA+AGG | 0.686256 | 3_4:+27662828 | Msa0496570:three_prime_UTR |
| CCTTGGGTGACACCTATATG+GGG | 0.695951 | 3_4:+27661634 | Msa0496570:CDS |
| GCTCTTCATGCAGAGATGTG+GGG | 0.705069 | 3_4:-27662857 | None:intergenic |
| ATCTAACGGTGAATCCGGTG+CGG | 0.719969 | 3_4:+27659913 | Msa0496570:CDS |
| AATACGCCGAATGAGCACAG+GGG | 0.789859 | 3_4:+27662718 | Msa0496570:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTCTTATATTAGAAAAAA+TGG | + | chr3_4:27659659-27659678 | Msa0496570:CDS | 10.0% |
| !!! | ATATTTTGGATTTTTTTTTT+TGG | + | chr3_4:27662453-27662472 | Msa0496570:three_prime_UTR | 10.0% |
| !! | TCTAAAAAAGAAAATTCATT+TGG | + | chr3_4:27660448-27660467 | Msa0496570:intron | 15.0% |
| !!! | TTATTATACAAATTTGTTAC+AGG | + | chr3_4:27660796-27660815 | Msa0496570:intron | 15.0% |
| !! | AAATTGAATAGATATGATAA+GGG | - | chr3_4:27661261-27661280 | None:intergenic | 15.0% |
| !! | AAAATTGAATAGATATGATA+AGG | - | chr3_4:27661262-27661281 | None:intergenic | 15.0% |
| !!! | ACATATTTTAACACATATTT+TGG | + | chr3_4:27662439-27662458 | Msa0496570:three_prime_UTR | 15.0% |
| !! | TGTGAATTAGTATAAAAATA+TGG | - | chr3_4:27663260-27663279 | None:intergenic | 15.0% |
| !! | TTCATCTTTCACTAAATTTA+AGG | + | chr3_4:27659303-27659322 | Msa0496570:five_prime_UTR | 20.0% |
| !! | ATTAAACATGAACATGTTTA+TGG | - | chr3_4:27659337-27659356 | None:intergenic | 20.0% |
| !! | TCTTATATTAGAAAAAATGG+AGG | + | chr3_4:27659662-27659681 | Msa0496570:CDS | 20.0% |
| !! | ATCAATAATCTTTACACAAT+TGG | + | chr3_4:27659692-27659711 | Msa0496570:CDS | 20.0% |
| !! | TCAATAATCTTTACACAATT+GGG | + | chr3_4:27659693-27659712 | Msa0496570:CDS | 20.0% |
| !!! | TCATTGAGATTTTATGAAAA+GGG | + | chr3_4:27659716-27659735 | Msa0496570:CDS | 20.0% |
| !! | TCATAATGAACATTCAATTT+AGG | - | chr3_4:27659968-27659987 | None:intergenic | 20.0% |
| !!! | AAAAAAATCTAAAACCACAT+AGG | - | chr3_4:27660404-27660423 | None:intergenic | 20.0% |
| !! | CTAAAATACTAAATCATATC+AGG | - | chr3_4:27661095-27661114 | None:intergenic | 20.0% |
| !! | GAAACAAATTAATAAGAATC+AGG | - | chr3_4:27661286-27661305 | None:intergenic | 20.0% |
| !!! | CTTATTAATTTGTTTCCTAT+AGG | + | chr3_4:27661290-27661309 | Msa0496570:intron | 20.0% |
| !! | CTTATATGATCTTAGAATTT+CGG | - | chr3_4:27661917-27661936 | None:intergenic | 20.0% |
| !! | AATCATAAAGAACTAATATG+AGG | - | chr3_4:27662084-27662103 | None:intergenic | 20.0% |
| !! | AATTATACACGTTAATATTG+AGG | + | chr3_4:27662296-27662315 | Msa0496570:CDS | 20.0% |
| !! | TTAATATTGAGGCTATATAA+GGG | + | chr3_4:27662307-27662326 | Msa0496570:CDS | 20.0% |
| !!! | TTCTTGGAATTTTATTCTTT+TGG | - | chr3_4:27662597-27662616 | None:intergenic | 20.0% |
| !! | AATAAAATTCCAAGAATTCA+TGG | + | chr3_4:27662601-27662620 | Msa0496570:three_prime_UTR | 20.0% |
| !!! | AAAACATTTTGAATCGTAAT+TGG | - | chr3_4:27662697-27662716 | None:intergenic | 20.0% |
| !! | CAAATAATTGCAAGATAAAT+GGG | - | chr3_4:27662748-27662767 | None:intergenic | 20.0% |
| !! | ACAAATAATTGCAAGATAAA+TGG | - | chr3_4:27662749-27662768 | None:intergenic | 20.0% |
| !! | TATTCATTAAATGATGTATG+TGG | + | chr3_4:27663120-27663139 | Msa0496570:three_prime_UTR | 20.0% |
| !! | CATTCAATTAATGATGTATA+TGG | - | chr3_4:27663159-27663178 | None:intergenic | 20.0% |
| !!! | ATATATTAGTCGGTTTTTCT+TGG | + | chr3_4:27659161-27659180 | Msa0496570:five_prime_UTR | 25.0% |
| ! | GCGTTAGTTGTTATAATATT+AGG | - | chr3_4:27659247-27659266 | None:intergenic | 25.0% |
| !! | GTCATTGAGATTTTATGAAA+AGG | + | chr3_4:27659715-27659734 | Msa0496570:CDS | 25.0% |
| ! | CACTAAAAGACTCAAATTTA+AGG | + | chr3_4:27659781-27659800 | Msa0496570:CDS | 25.0% |
| !! | CTCAAATTTAAGGTTAATAG+TGG | + | chr3_4:27659791-27659810 | Msa0496570:CDS | 25.0% |
| ! | AGTTATGGTGATTATGTTAT+TGG | + | chr3_4:27659815-27659834 | Msa0496570:CDS | 25.0% |
| !!! | GTGATAAGTAGTTGTTTTAA+GGG | + | chr3_4:27659935-27659954 | Msa0496570:CDS | 25.0% |
| !!! | ACCAAATGTTTTATTTTTGC+CGG | + | chr3_4:27660015-27660034 | Msa0496570:CDS | 25.0% |
| ! | TATACTATTTGAGCAAACAA+TGG | - | chr3_4:27660350-27660369 | None:intergenic | 25.0% |
| !!! | TTTTTTCTAACAACTTATGC+TGG | + | chr3_4:27660418-27660437 | Msa0496570:intron | 25.0% |
| ! | TCTTTATATTTGAAGGTAGA+GGG | - | chr3_4:27661009-27661028 | None:intergenic | 25.0% |
| ! | TTCTTTATATTTGAAGGTAG+AGG | - | chr3_4:27661010-27661029 | None:intergenic | 25.0% |
| ! | GTCAGTTTCTTTATATTTGA+AGG | - | chr3_4:27661016-27661035 | None:intergenic | 25.0% |
| ! | TTTAGTTGCAAACTTCTAAT+TGG | + | chr3_4:27661110-27661129 | Msa0496570:intron | 25.0% |
| ! | TAATGGAATAGATGTGATAA+GGG | - | chr3_4:27661236-27661255 | None:intergenic | 25.0% |
| ! | TTAATGGAATAGATGTGATA+AGG | - | chr3_4:27661237-27661256 | None:intergenic | 25.0% |
| ! | TAGATATGATAAGGGTTTAA+TGG | - | chr3_4:27661253-27661272 | None:intergenic | 25.0% |
| !!! | ATTAATTTGTTTCCTATAGG+TGG | + | chr3_4:27661293-27661312 | Msa0496570:intron | 25.0% |
| !!! | TTAATTTGTTTCCTATAGGT+GGG | + | chr3_4:27661294-27661313 | Msa0496570:intron | 25.0% |
| ! | AAAAACGTTATCCACATTTA+TGG | - | chr3_4:27661380-27661399 | None:intergenic | 25.0% |
| ! | AAACATAATTGAAGCAAATG+AGG | - | chr3_4:27661443-27661462 | None:intergenic | 25.0% |
| ! | CAATTGCTAACTAATTAACT+TGG | + | chr3_4:27661747-27661766 | Msa0496570:intron | 25.0% |
| ! | ATAAAGAACTAATATGAGGA+AGG | - | chr3_4:27662080-27662099 | None:intergenic | 25.0% |
| !!! | GTCCAATTTTATTTATTTGC+AGG | + | chr3_4:27662125-27662144 | Msa0496570:intron | 25.0% |
| ! | GACCTGCAAATAAATAAAAT+TGG | - | chr3_4:27662130-27662149 | None:intergenic | 25.0% |
| ! | GTTAATATTGAGGCTATATA+AGG | + | chr3_4:27662306-27662325 | Msa0496570:CDS | 25.0% |
| ! | TAATATTGAGGCTATATAAG+GGG | + | chr3_4:27662308-27662327 | Msa0496570:exon | 25.0% |
| !!! | TTTTTTTTTTGGTACAAGAG+AGG | + | chr3_4:27662464-27662483 | Msa0496570:three_prime_UTR | 25.0% |
| !!! | TTTTTTTTTGGTACAAGAGA+GGG | + | chr3_4:27662465-27662484 | Msa0496570:three_prime_UTR | 25.0% |
| !!! | AGTGTTTAGTTTTCTCTTTT+GGG | - | chr3_4:27662497-27662516 | None:intergenic | 25.0% |
| !!! | AAGTGTTTAGTTTTCTCTTT+TGG | - | chr3_4:27662498-27662517 | None:intergenic | 25.0% |
| ! | TACTCTTAATCAGTTTCAAA+TGG | - | chr3_4:27663062-27663081 | None:intergenic | 25.0% |
| ! | AATATCATGTAAGATGTTGT+TGG | + | chr3_4:27663289-27663308 | Msa0496570:three_prime_UTR | 25.0% |
| ! | CAAAGATAAAACATATGCAT+TGG | + | chr3_4:27663381-27663400 | Msa0496570:three_prime_UTR | 25.0% |
| ! | TACAATAGTTTAGAGTTGCT+TGG | - | chr3_4:27659209-27659228 | None:intergenic | 30.0% |
| CTCTAAACTATTGTATTCCT+TGG | + | chr3_4:27659214-27659233 | Msa0496570:five_prime_UTR | 30.0% | |
| TAATATTAGGAACAGATCCA+AGG | - | chr3_4:27659234-27659253 | None:intergenic | 30.0% | |
| ! | ACTGAATGATTTTCTGTTGT+TGG | + | chr3_4:27659514-27659533 | Msa0496570:intron | 30.0% |
| AGAACATAGTTGCTAAGAAA+TGG | + | chr3_4:27659544-27659563 | Msa0496570:intron | 30.0% | |
| GAAATGGAAACTCTTTCATA+TGG | + | chr3_4:27659560-27659579 | Msa0496570:exon | 30.0% | |
| GTTTGAATTCAACTCAATCA+AGG | + | chr3_4:27659636-27659655 | Msa0496570:CDS | 30.0% | |
| AAAAGGGTCATCAACAAAAT+GGG | + | chr3_4:27659732-27659751 | Msa0496570:CDS | 30.0% | |
| ! | AAGGTTAATAGTGGAAGTTA+TGG | + | chr3_4:27659800-27659819 | Msa0496570:CDS | 30.0% |
| TATGTTATTGGTGAAGATGA+AGG | + | chr3_4:27659827-27659846 | Msa0496570:CDS | 30.0% | |
| ATGAAGGAAGAGATATTGTA+GGG | + | chr3_4:27659843-27659862 | Msa0496570:CDS | 30.0% | |
| !! | GGTGATAAGTAGTTGTTTTA+AGG | + | chr3_4:27659934-27659953 | Msa0496570:CDS | 30.0% |
| !!! | TAAGTAGTTGTTTTAAGGGA+TGG | + | chr3_4:27659939-27659958 | Msa0496570:CDS | 30.0% |
| AATGTTCATTATGAGAAAGC+TGG | + | chr3_4:27659974-27659993 | Msa0496570:CDS | 30.0% | |
| !!! | CCAAATGTTTTATTTTTGCC+GGG | + | chr3_4:27660016-27660035 | Msa0496570:CDS | 30.0% |
| ! | TTGTGTATTCGGTTGATTTA+TGG | + | chr3_4:27660245-27660264 | Msa0496570:CDS | 30.0% |
| ATTTATGGCAAGATCAAGTT+CGG | + | chr3_4:27660260-27660279 | Msa0496570:CDS | 30.0% | |
| ! | GGTAAATAACTTGCATTGTT+TGG | + | chr3_4:27660297-27660316 | Msa0496570:intron | 30.0% |
| TGTTTGCTCAAATAGTATAC+TGG | + | chr3_4:27660351-27660370 | Msa0496570:intron | 30.0% | |
| AGTATACTGGAAAATGTTCT+TGG | + | chr3_4:27660364-27660383 | Msa0496570:intron | 30.0% | |
| ! | TCAAATAAGTCGATTCAAAC+AGG | - | chr3_4:27660474-27660493 | None:intergenic | 30.0% |
| CCTAAAGAGCTTATTGAAAT+AGG | - | chr3_4:27660582-27660601 | None:intergenic | 30.0% | |
| CCTATTTCAATAAGCTCTTT+AGG | + | chr3_4:27660579-27660598 | Msa0496570:intron | 30.0% | |
| !! | ACAAATTTGTTACAGGTCAT+CGG | + | chr3_4:27660803-27660822 | Msa0496570:intron | 30.0% |
| TATATTGTAGGCAATTCACT+AGG | + | chr3_4:27660836-27660855 | Msa0496570:CDS | 30.0% | |
| TATAAAGAAACTGACAGAGT+TGG | + | chr3_4:27661021-27661040 | Msa0496570:CDS | 30.0% | |
| AATGGAATAGATGTGATAAG+GGG | - | chr3_4:27661235-27661254 | None:intergenic | 30.0% | |
| ! | AGTACATCAGCAATACTTTT+CGG | - | chr3_4:27661334-27661353 | None:intergenic | 30.0% |
| TACGTGAATACACATGTTAA+TGG | + | chr3_4:27661539-27661558 | Msa0496570:intron | 30.0% | |
| ! | ACACATGTTAATGGTTTTTG+CGG | + | chr3_4:27661548-27661567 | Msa0496570:intron | 30.0% |
| ! | ATTTGATAATAAGGAGCTTC+AGG | - | chr3_4:27661682-27661701 | None:intergenic | 30.0% |
| ! | ACCTTACAAGCTAATTTTGT+AGG | + | chr3_4:27661867-27661886 | Msa0496570:intron | 30.0% |
| ! | CCTTACAAGCTAATTTTGTA+GGG | + | chr3_4:27661868-27661887 | Msa0496570:intron | 30.0% |
| ATGATCTTAGAATTTCGGTT+GGG | - | chr3_4:27661912-27661931 | None:intergenic | 30.0% | |
| TATGATCTTAGAATTTCGGT+TGG | - | chr3_4:27661913-27661932 | None:intergenic | 30.0% | |
| TAAATATTCAGTGCGCAAAA+AGG | - | chr3_4:27661997-27662016 | None:intergenic | 30.0% | |
| GTCATAAATTTCTTACTTCG+TGG | + | chr3_4:27662147-27662166 | Msa0496570:CDS | 30.0% | |
| TAAATTTCTTACTTCGTGGA+TGG | + | chr3_4:27662151-27662170 | Msa0496570:CDS | 30.0% | |
| CTAACTCTCTTTCAATAGTT+TGG | - | chr3_4:27662242-27662261 | None:intergenic | 30.0% | |
| ! | ATCAAGTGATTAATCGACTT+CGG | + | chr3_4:27662394-27662413 | Msa0496570:three_prime_UTR | 30.0% |
| ACACTTAAACGAACATTTCT+AGG | + | chr3_4:27662512-27662531 | Msa0496570:three_prime_UTR | 30.0% | |
| AATTCCAAGAATTCATGGTA+AGG | + | chr3_4:27662606-27662625 | Msa0496570:three_prime_UTR | 30.0% | |
| CCAGCCAATATAAATTGTTT+CGG | + | chr3_4:27663024-27663043 | Msa0496570:three_prime_UTR | 30.0% | |
| CACACCGAAACAATTTATAT+TGG | - | chr3_4:27663031-27663050 | None:intergenic | 30.0% | |
| ! | TCACTACACAACACATATTT+TGG | + | chr3_4:27663094-27663113 | Msa0496570:three_prime_UTR | 30.0% |
| ATATGTCATCTATTGAGAGA+CGG | - | chr3_4:27663202-27663221 | None:intergenic | 30.0% | |
| GTGTTCATAACTTGACAACA+TGG | - | chr3_4:27659593-27659612 | None:intergenic | 35.0% | |
| GAAAAGGGTCATCAACAAAA+TGG | + | chr3_4:27659731-27659750 | Msa0496570:CDS | 35.0% | |
| ! | GTCATCAACAAAATGGGTTT+AGG | + | chr3_4:27659738-27659757 | Msa0496570:CDS | 35.0% |
| !! | AGGTCACAAAGTGTTTTTGA+AGG | + | chr3_4:27659758-27659777 | Msa0496570:CDS | 35.0% |
| GATGAAGGAAGAGATATTGT+AGG | + | chr3_4:27659842-27659861 | Msa0496570:CDS | 35.0% | |
| TGAAGGAAGAGATATTGTAG+GGG | + | chr3_4:27659844-27659863 | Msa0496570:CDS | 35.0% | |
| CCCGGCAAAAATAAAACATT+TGG | - | chr3_4:27660019-27660038 | None:intergenic | 35.0% | |
| !!! | GTTTTATTTTTGCCGGGTTT+CGG | + | chr3_4:27660022-27660041 | Msa0496570:CDS | 35.0% |
| ! | CAAATTTGCTTGTTCCTATG+TGG | + | chr3_4:27660387-27660406 | Msa0496570:intron | 35.0% |
| ! | TTAAGTTGCGTATCCAAACA+AGG | + | chr3_4:27660666-27660685 | Msa0496570:intron | 35.0% |
| ! | AATCATCAGCACTCTTTTGA+AGG | + | chr3_4:27660745-27660764 | Msa0496570:intron | 35.0% |
| GAATTGCCTACAATATAGAC+TGG | - | chr3_4:27660833-27660852 | None:intergenic | 35.0% | |
| TGCTATCCTCATTTAGTGAA+AGG | + | chr3_4:27660887-27660906 | Msa0496570:CDS | 35.0% | |
| GTTACACCTTTCACTAAATG+AGG | - | chr3_4:27660896-27660915 | None:intergenic | 35.0% | |
| ! | TGCTTAATGCAACACCTTTT+TGG | + | chr3_4:27660918-27660937 | Msa0496570:CDS | 35.0% |
| ! | GCTTAATGCAACACCTTTTT+GGG | + | chr3_4:27660919-27660938 | Msa0496570:CDS | 35.0% |
| ! | CTTAATGCAACACCTTTTTG+GGG | + | chr3_4:27660920-27660939 | Msa0496570:CDS | 35.0% |
| ! | TTAATGCAACACCTTTTTGG+GGG | + | chr3_4:27660921-27660940 | Msa0496570:CDS | 35.0% |
| ! | ACTTGCCAAAGTATTTCCAT+GGG | + | chr3_4:27660973-27660992 | Msa0496570:CDS | 35.0% |
| TCGCAAATGAATGACTACAT+CGG | - | chr3_4:27661154-27661173 | None:intergenic | 35.0% | |
| ! | ACTAATTTTCTCCCACCTAT+AGG | - | chr3_4:27661308-27661327 | None:intergenic | 35.0% |
| TTTCCATACATGAGGCAAAT+CGG | - | chr3_4:27661607-27661626 | None:intergenic | 35.0% | |
| ! | GATCTTCTTTTCCATACATG+AGG | - | chr3_4:27661615-27661634 | None:intergenic | 35.0% |
| TGTATGGAAAAGAAGATCCT+TGG | + | chr3_4:27661617-27661636 | Msa0496570:CDS | 35.0% | |
| GTATGGAAAAGAAGATCCTT+GGG | + | chr3_4:27661618-27661637 | Msa0496570:CDS | 35.0% | |
| ATATGTTAAGAGCTGCACAT+TGG | + | chr3_4:27661796-27661815 | Msa0496570:intron | 35.0% | |
| ! | TGCACATTGGATTTGAGATA+GGG | + | chr3_4:27661809-27661828 | Msa0496570:intron | 35.0% |
| CAACTTATAAACTCACATCC+AGG | - | chr3_4:27661835-27661854 | None:intergenic | 35.0% | |
| CTGGATGTGAGTTTATAAGT+TGG | + | chr3_4:27661833-27661852 | Msa0496570:intron | 35.0% | |
| !! | CCCTACAAAATTAGCTTGTA+AGG | - | chr3_4:27661871-27661890 | None:intergenic | 35.0% |
| ! | TTTTGTAGGGTTGAGTTAAG+CGG | + | chr3_4:27661881-27661900 | Msa0496570:intron | 35.0% |
| TATGAGGAAGGAATAACATG+AGG | - | chr3_4:27662068-27662087 | None:intergenic | 35.0% | |
| ATTAGAAACCTAGAGTCTGA+TGG | + | chr3_4:27662174-27662193 | Msa0496570:CDS | 35.0% | |
| !! | CATCGATCTGAACTTTTTCT+TGG | - | chr3_4:27662270-27662289 | None:intergenic | 35.0% |
| ! | TAGTTTTCTCTTTTGGGCTT+CGG | - | chr3_4:27662491-27662510 | None:intergenic | 35.0% |
| CTCAAAGTTGCTTATTGACA+TGG | - | chr3_4:27662774-27662793 | None:intergenic | 35.0% | |
| TGGATCAAACTCAATTGTGA+TGG | - | chr3_4:27662986-27663005 | None:intergenic | 35.0% | |
| CCGAAACAATTTATATTGGC+TGG | - | chr3_4:27663027-27663046 | None:intergenic | 35.0% | |
| TACATGTGTCGAAATCAACT+AGG | + | chr3_4:27663404-27663423 | Msa0496570:three_prime_UTR | 35.0% | |
| ATCAACTAGGTCATCTAATG+TGG | + | chr3_4:27663417-27663436 | Msa0496570:three_prime_UTR | 35.0% | |
| TCAACTAGGTCATCTAATGT+GGG | + | chr3_4:27663418-27663437 | Msa0496570:three_prime_UTR | 35.0% | |
| !! | GGAATCAAAACCTTTGAAGC+AGG | - | chr3_4:27659878-27659897 | None:intergenic | 40.0% |
| !!! | GCTTCAAAGGTTTTGATTCC+TGG | + | chr3_4:27659878-27659897 | Msa0496570:CDS | 40.0% |
| !!! | GGTTTTGATTCCTGGTTTAC+CGG | + | chr3_4:27659886-27659905 | Msa0496570:CDS | 40.0% |
| TTAGATTCATCCGGTAAACC+AGG | - | chr3_4:27659899-27659918 | None:intergenic | 40.0% | |
| GGTTTACCGGATGAATCTAA+CGG | + | chr3_4:27659899-27659918 | Msa0496570:CDS | 40.0% | |
| GATTCACCGTTAGATTCATC+CGG | - | chr3_4:27659908-27659927 | None:intergenic | 40.0% | |
| GATGAATCTAACGGTGAATC+CGG | + | chr3_4:27659908-27659927 | Msa0496570:CDS | 40.0% | |
| GAAAGCTGGTTGTGAAAATG+TGG | + | chr3_4:27659988-27660007 | Msa0496570:CDS | 40.0% | |
| TCATTATGAGAAGCAGCTGA+TGG | + | chr3_4:27660057-27660076 | Msa0496570:CDS | 40.0% | |
| ! | TAGGTCGTGATTTTCGTGTT+TGG | + | chr3_4:27660083-27660102 | Msa0496570:CDS | 40.0% |
| ! | AGGTCGTGATTTTCGTGTTT+GGG | + | chr3_4:27660084-27660103 | Msa0496570:CDS | 40.0% |
| !!! | GTTTGGGCGTTGGATTTTTT+AGG | + | chr3_4:27660100-27660119 | Msa0496570:CDS | 40.0% |
| !!! | GCGTTGGATTTTTTAGGACA+AGG | + | chr3_4:27660106-27660125 | Msa0496570:CDS | 40.0% |
| AAAGGAGCAGGATCTTCAAA+AGG | - | chr3_4:27660142-27660161 | None:intergenic | 40.0% | |
| ! | CTCCTTTGTCTAAGGTAGAA+GGG | + | chr3_4:27660155-27660174 | Msa0496570:CDS | 40.0% |
| ! | TCCTTTGTCTAAGGTAGAAG+GGG | + | chr3_4:27660156-27660175 | Msa0496570:CDS | 40.0% |
| AGTTCGGTACTTCATTGAAG+AGG | + | chr3_4:27660276-27660295 | Msa0496570:CDS | 40.0% | |
| TTGCGTATCCAAACAAGGTT+AGG | + | chr3_4:27660671-27660690 | Msa0496570:intron | 40.0% | |
| GGTGAACCAGTCTATATTGT+AGG | + | chr3_4:27660824-27660843 | Msa0496570:CDS | 40.0% | |
| ATTGTAGGCAATTCACTAGG+AGG | + | chr3_4:27660839-27660858 | Msa0496570:CDS | 40.0% | |
| CACTAAATGAGGATAGCATG+CGG | - | chr3_4:27660885-27660904 | None:intergenic | 40.0% | |
| ! | CCAGGAGATTTTACTGGATT+TGG | - | chr3_4:27660953-27660972 | None:intergenic | 40.0% |
| CCAAATCCAGTAAAATCTCC+TGG | + | chr3_4:27660950-27660969 | Msa0496570:CDS | 40.0% | |
| ! | GACTTGCCAAAGTATTTCCA+TGG | + | chr3_4:27660972-27660991 | Msa0496570:CDS | 40.0% |
| !! | TGACAGAGTTGGTGTAAGTA+TGG | + | chr3_4:27661032-27661051 | Msa0496570:intron | 40.0% |
| CGCAGATCATTCCATAAATG+TGG | + | chr3_4:27661366-27661385 | Msa0496570:CDS | 40.0% | |
| TCAATTATGTTTGCTCCCCA+AGG | + | chr3_4:27661451-27661470 | Msa0496570:CDS | 40.0% | |
| CTGAAGGATAATTCTCCTTG+GGG | - | chr3_4:27661469-27661488 | None:intergenic | 40.0% | |
| GCTGAAGGATAATTCTCCTT+GGG | - | chr3_4:27661470-27661489 | None:intergenic | 40.0% | |
| !! | CCTTGATAATGTTTCGCTGA+AGG | - | chr3_4:27661485-27661504 | None:intergenic | 40.0% |
| CCTTCAGCGAAACATTATCA+AGG | + | chr3_4:27661482-27661501 | Msa0496570:CDS | 40.0% | |
| ! | TTTTAGATGTCGAGCGAACA+AGG | + | chr3_4:27661579-27661598 | Msa0496570:intron | 40.0% |
| TTAACCTGAAGTCCCCATAT+AGG | - | chr3_4:27661649-27661668 | None:intergenic | 40.0% | |
| ! | TATGGGGACTTCAGGTTAAA+AGG | + | chr3_4:27661650-27661669 | Msa0496570:CDS | 40.0% |
| !! | GCAGGGCTGATTTGATAATA+AGG | - | chr3_4:27661691-27661710 | None:intergenic | 40.0% |
| TATTATCAAATCAGCCCTGC+TGG | + | chr3_4:27661691-27661710 | Msa0496570:CDS | 40.0% | |
| GTTAGCAATTGCATACCTCA+GGG | - | chr3_4:27661738-27661757 | None:intergenic | 40.0% | |
| AGTTAGCAATTGCATACCTC+AGG | - | chr3_4:27661739-27661758 | None:intergenic | 40.0% | |
| ! | CTGCACATTGGATTTGAGAT+AGG | + | chr3_4:27661808-27661827 | Msa0496570:intron | 40.0% |
| AAAAGGAAATGCCGGATAGT+TGG | - | chr3_4:27661980-27661999 | None:intergenic | 40.0% | |
| ! | GTGTCTATTTCTTCAAGCAG+AGG | - | chr3_4:27662213-27662232 | None:intergenic | 40.0% |
| TCAGCCTTACCATGAATTCT+TGG | - | chr3_4:27662613-27662632 | None:intergenic | 40.0% | |
| ATTCATGGTAAGGCTGAAGT+TGG | + | chr3_4:27662616-27662635 | Msa0496570:three_prime_UTR | 40.0% | |
| ! | GTTCATCACACTTTGAGAGA+AGG | - | chr3_4:27662665-27662684 | None:intergenic | 40.0% |
| GAATCGTAATTGGCAGATTC+AGG | - | chr3_4:27662687-27662706 | None:intergenic | 40.0% | |
| ! | TATGTACCTTGGTCTAGAGT+TGG | - | chr3_4:27662837-27662856 | None:intergenic | 40.0% |
| !! | AAAGGTTTTGTCCGCAAGAT+TGG | - | chr3_4:27662893-27662912 | None:intergenic | 40.0% |
| GCTAATGGTAGATGGATCAA+AGG | - | chr3_4:27662911-27662930 | None:intergenic | 40.0% | |
| !! | CGGTTTTTCTTGGCTCTTAG+AGG | + | chr3_4:27659171-27659190 | Msa0496570:five_prime_UTR | 45.0% |
| ! | GGTTGATGTACCTGCTTCAA+AGG | + | chr3_4:27659865-27659884 | Msa0496570:CDS | 45.0% |
| ACAACTACTTATCACCGCAC+CGG | - | chr3_4:27659930-27659949 | None:intergenic | 45.0% | |
| AAAGAACCAACACCGAAACC+CGG | - | chr3_4:27660037-27660056 | None:intergenic | 45.0% | |
| !! | GAGAAGCAGCTGATGGATTT+AGG | + | chr3_4:27660064-27660083 | Msa0496570:CDS | 45.0% |
| ! | TGATTTTCGTGTTTGGGCGT+TGG | + | chr3_4:27660090-27660109 | Msa0496570:CDS | 45.0% |
| AGATCCTGCTCCTTTGTCTA+AGG | + | chr3_4:27660147-27660166 | Msa0496570:CDS | 45.0% | |
| TCTACCTTAGACAAAGGAGC+AGG | - | chr3_4:27660154-27660173 | None:intergenic | 45.0% | |
| ! | GCTCCTTTGTCTAAGGTAGA+AGG | + | chr3_4:27660154-27660173 | Msa0496570:CDS | 45.0% |
| ACCCCTTCTACCTTAGACAA+AGG | - | chr3_4:27660160-27660179 | None:intergenic | 45.0% | |
| GAGTGGAAATGTTTCGCCTT+GGG | + | chr3_4:27660186-27660205 | Msa0496570:CDS | 45.0% | |
| AGTGGAAATGTTTCGCCTTG+GGG | + | chr3_4:27660187-27660206 | Msa0496570:CDS | 45.0% | |
| ! | AATGTTTCGCCTTGGGGTTT+TGG | + | chr3_4:27660193-27660212 | Msa0496570:CDS | 45.0% |
| GTTTCATCTCCAAAACCCCA+AGG | - | chr3_4:27660205-27660224 | None:intergenic | 45.0% | |
| TGTCCACTAGCATAAGCACT+TGG | + | chr3_4:27660497-27660516 | Msa0496570:intron | 45.0% | |
| GTCCACTAGCATAAGCACTT+GGG | + | chr3_4:27660498-27660517 | Msa0496570:intron | 45.0% | |
| TAAGCACTTGGGAGACTGTT+TGG | + | chr3_4:27660509-27660528 | Msa0496570:intron | 45.0% | |
| AAGCACTTGGGAGACTGTTT+GGG | + | chr3_4:27660510-27660529 | Msa0496570:intron | 45.0% | |
| TCCAAACAAGGTTAGGTCAG+TGG | + | chr3_4:27660678-27660697 | Msa0496570:intron | 45.0% | |
| TCCACTGACCTAACCTTGTT+TGG | - | chr3_4:27660682-27660701 | None:intergenic | 45.0% | |
| TTTGGCAGAAACCCCCAAAA+AGG | - | chr3_4:27660935-27660954 | None:intergenic | 45.0% | |
| ! | GCAAGTCCAGGAGATTTTAC+TGG | - | chr3_4:27660959-27660978 | None:intergenic | 45.0% |
| GGAAATACTTTGGCAAGTCC+AGG | - | chr3_4:27660971-27660990 | None:intergenic | 45.0% | |
| TGAAGGTAGAGGGAATGTTC+CGG | - | chr3_4:27660999-27661018 | None:intergenic | 45.0% | |
| TAGATGTGATAAGGGGATCC+TGG | - | chr3_4:27661228-27661247 | None:intergenic | 45.0% | |
| CGCTGAAGGATAATTCTCCT+TGG | - | chr3_4:27661471-27661490 | None:intergenic | 45.0% | |
| ATCCTTGGGTGACACCTATA+TGG | + | chr3_4:27661632-27661651 | Msa0496570:CDS | 45.0% | |
| TCCTTGGGTGACACCTATAT+GGG | + | chr3_4:27661633-27661652 | Msa0496570:CDS | 45.0% | |
| ! | GGGACTTCAGGTTAAAAGGA+AGG | + | chr3_4:27661654-27661673 | Msa0496570:CDS | 45.0% |
| ! | ATTGGATTTGAGATAGGGCC+TGG | + | chr3_4:27661814-27661833 | Msa0496570:intron | 45.0% |
| AGAGTGTATCCAAGATCCGT+TGG | + | chr3_4:27661935-27661954 | Msa0496570:intron | 45.0% | |
| GAGTGTATCCAAGATCCGTT+GGG | + | chr3_4:27661936-27661955 | Msa0496570:intron | 45.0% | |
| !! | ATAGTTGGTGACCCAATAGC+AGG | - | chr3_4:27661965-27661984 | None:intergenic | 45.0% |
| CTATTGGGTCACCAACTATC+CGG | + | chr3_4:27661966-27661985 | Msa0496570:intron | 45.0% | |
| AGTGCGCAAAAAGGAAATGC+CGG | - | chr3_4:27661988-27662007 | None:intergenic | 45.0% | |
| CTCCAGAGATGTCATCAAAG+AGG | + | chr3_4:27662543-27662562 | Msa0496570:three_prime_UTR | 45.0% | |
| ! | CTCCTCTTTGATGACATCTC+TGG | - | chr3_4:27662548-27662567 | None:intergenic | 45.0% |
| AGGAGACTATTGAGCTCACT+AGG | + | chr3_4:27662563-27662582 | Msa0496570:three_prime_UTR | 45.0% | |
| AGACTATTGAGCTCACTAGG+AGG | + | chr3_4:27662566-27662585 | Msa0496570:three_prime_UTR | 45.0% | |
| GACTATTGAGCTCACTAGGA+GGG | + | chr3_4:27662567-27662586 | Msa0496570:three_prime_UTR | 45.0% | |
| ACTATTGAGCTCACTAGGAG+GGG | + | chr3_4:27662568-27662587 | Msa0496570:three_prime_UTR | 45.0% | |
| !! | AAGGCAACAGAAGTGCTGAT+TGG | - | chr3_4:27662646-27662665 | None:intergenic | 45.0% |
| TGCTCTTCATGCAGAGATGT+GGG | - | chr3_4:27662861-27662880 | None:intergenic | 45.0% | |
| ATGCTCTTCATGCAGAGATG+TGG | - | chr3_4:27662862-27662881 | None:intergenic | 45.0% | |
| TTCGGGATGCTAATGGTAGA+TGG | - | chr3_4:27662919-27662938 | None:intergenic | 45.0% | |
| TACCATTAGCATCCCGAAGT+AGG | + | chr3_4:27662921-27662940 | Msa0496570:three_prime_UTR | 45.0% | |
| AAAGAGAATGGAGATCGCTC+GGG | - | chr3_4:27662956-27662975 | None:intergenic | 45.0% | |
| CAAAGAGAATGGAGATCGCT+CGG | - | chr3_4:27662957-27662976 | None:intergenic | 45.0% | |
| AGTTTGATCCATCCCTCTTG+AGG | + | chr3_4:27662995-27663014 | Msa0496570:three_prime_UTR | 45.0% | |
| GGAAATATCCTCAAGAGGGA+TGG | - | chr3_4:27663006-27663025 | None:intergenic | 45.0% | |
| GGCTGGAAATATCCTCAAGA+GGG | - | chr3_4:27663010-27663029 | None:intergenic | 45.0% | |
| TGGCTGGAAATATCCTCAAG+AGG | - | chr3_4:27663011-27663030 | None:intergenic | 45.0% | |
| GTCATCTATTGAGAGACGGA+GGG | - | chr3_4:27663198-27663217 | None:intergenic | 45.0% | |
| TGTCATCTATTGAGAGACGG+AGG | - | chr3_4:27663199-27663218 | None:intergenic | 45.0% | |
| ATCTAACGGTGAATCCGGTG+CGG | + | chr3_4:27659913-27659932 | Msa0496570:CDS | 50.0% | |
| !! | TTTTTGCCGGGTTTCGGTGT+TGG | + | chr3_4:27660028-27660047 | Msa0496570:CDS | 50.0% |
| GTAGAAGGGGTTATGTCGAG+TGG | + | chr3_4:27660169-27660188 | Msa0496570:CDS | 50.0% | |
| CGAGTGGAAATGTTTCGCCT+TGG | + | chr3_4:27660185-27660204 | Msa0496570:CDS | 50.0% | |
| TTGGAGATGAAACCGAACCG+TGG | + | chr3_4:27660212-27660231 | Msa0496570:CDS | 50.0% | |
| TGGAGATGAAACCGAACCGT+GGG | + | chr3_4:27660213-27660232 | Msa0496570:CDS | 50.0% | |
| GGCGACTGAGCTTGTGTATT+CGG | + | chr3_4:27660234-27660253 | Msa0496570:CDS | 50.0% | |
| CTCCCAAGTGCTTATGCTAG+TGG | - | chr3_4:27660503-27660522 | None:intergenic | 50.0% | |
| ! | GCCAAAGTATTTCCATGGGC+CGG | + | chr3_4:27660977-27660996 | Msa0496570:CDS | 50.0% |
| TCCGGCCCATGGAAATACTT+TGG | - | chr3_4:27660981-27661000 | None:intergenic | 50.0% | |
| ACTGCTGATAGTACACCTCC+AGG | + | chr3_4:27661207-27661226 | Msa0496570:intron | 50.0% | |
| ATGTGATAAGGGGATCCTGG+AGG | - | chr3_4:27661225-27661244 | None:intergenic | 50.0% | |
| !! | GTGCCGATTTGCCTCATGTA+TGG | + | chr3_4:27661601-27661620 | Msa0496570:CDS | 50.0% |
| CCTTGGGTGACACCTATATG+GGG | + | chr3_4:27661634-27661653 | Msa0496570:CDS | 50.0% | |
| GACACCTATATGGGGACTTC+AGG | + | chr3_4:27661642-27661661 | Msa0496570:CDS | 50.0% | |
| AGAGAGAGCCATCAGACTCT+AGG | - | chr3_4:27662185-27662204 | None:intergenic | 50.0% | |
| TGAATACGCCGAATGAGCAC+AGG | + | chr3_4:27662716-27662735 | Msa0496570:three_prime_UTR | 50.0% | |
| GAATACGCCGAATGAGCACA+GGG | + | chr3_4:27662717-27662736 | Msa0496570:three_prime_UTR | 50.0% | |
| AATACGCCGAATGAGCACAG+GGG | + | chr3_4:27662718-27662737 | Msa0496570:three_prime_UTR | 50.0% | |
| !! | CTAGAGTTGGCTTGGAGAGA+CGG | - | chr3_4:27662824-27662843 | None:intergenic | 50.0% |
| TCCAAGCCAACTCTAGACCA+AGG | + | chr3_4:27662828-27662847 | Msa0496570:three_prime_UTR | 50.0% | |
| ! | ACCTTGGTCTAGAGTTGGCT+TGG | - | chr3_4:27662832-27662851 | None:intergenic | 50.0% |
| GAGATGTGGGGTATGTACCT+TGG | - | chr3_4:27662848-27662867 | None:intergenic | 50.0% | |
| GCTCTTCATGCAGAGATGTG+GGG | - | chr3_4:27662860-27662879 | None:intergenic | 50.0% | |
| CATCACAAGCGCCAATCTTG+CGG | + | chr3_4:27662879-27662898 | Msa0496570:three_prime_UTR | 50.0% | |
| GATGGAGCGTGCAAAGAGAA+TGG | - | chr3_4:27662968-27662987 | None:intergenic | 50.0% | |
| GGTCATCTAATGTGGGACGA+AGG | + | chr3_4:27663425-27663444 | Msa0496570:three_prime_UTR | 50.0% | |
| TACACAAGCTCAGTCGCCCA+CGG | - | chr3_4:27660232-27660251 | None:intergenic | 55.0% | |
| TGCAGCAGCAGGATGTCTTG+TGG | - | chr3_4:27661419-27661438 | None:intergenic | 55.0% | |
| ! | CCCCATATAGGTGTCACCCA+AGG | - | chr3_4:27661637-27661656 | None:intergenic | 55.0% |
| CCTCAGGGACTTCGTCATGA+GGG | - | chr3_4:27661723-27661742 | None:intergenic | 55.0% | |
| ACCTCAGGGACTTCGTCATG+AGG | - | chr3_4:27661724-27661743 | None:intergenic | 55.0% | |
| !! | GTTGGTGACCCAATAGCAGG+TGG | - | chr3_4:27661962-27661981 | None:intergenic | 55.0% |
| GGACAACCCCTGTGCTCATT+CGG | - | chr3_4:27662727-27662746 | None:intergenic | 55.0% | |
| GGCCTACTTCGGGATGCTAA+TGG | - | chr3_4:27662926-27662945 | None:intergenic | 55.0% | |
| AATGGAGATCGCTCGGGATG+TGG | - | chr3_4:27662950-27662969 | None:intergenic | 55.0% | |
| AAGCTCAGTCGCCCACGGTT+CGG | - | chr3_4:27660227-27660246 | None:intergenic | 60.0% | |
| AGAGGGAATGTTCCGGCCCA+TGG | - | chr3_4:27660992-27661011 | None:intergenic | 60.0% | |
| GCAAATGAGGCTGCAGCAGC+AGG | - | chr3_4:27661430-27661449 | None:intergenic | 60.0% | |
| CATGAGGGCAGTGACCAGCA+GGG | - | chr3_4:27661708-27661727 | None:intergenic | 60.0% | |
| TCATGAGGGCAGTGACCAGC+AGG | - | chr3_4:27661709-27661728 | None:intergenic | 60.0% | |
| CCCTCATGACGAAGTCCCTG+AGG | + | chr3_4:27661720-27661739 | Msa0496570:CDS | 60.0% | |
| TCCGTTGGGCCACCTGCTAT+TGG | + | chr3_4:27661950-27661969 | Msa0496570:intron | 60.0% | |
| CCCAATAGCAGGTGGCCCAA+CGG | - | chr3_4:27661954-27661973 | None:intergenic | 60.0% | |
| CCGTTGGGCCACCTGCTATT+GGG | + | chr3_4:27661951-27661970 | Msa0496570:intron | 60.0% | |
| GGGATGTGGAGGCCTACTTC+GGG | - | chr3_4:27662936-27662955 | None:intergenic | 60.0% | |
| CGGGATGTGGAGGCCTACTT+CGG | - | chr3_4:27662937-27662956 | None:intergenic | 60.0% | |
| GCAGGTGGCCCAACGGATCT+TGG | - | chr3_4:27661947-27661966 | None:intergenic | 65.0% | |
| GGAGATCGCTCGGGATGTGG+AGG | - | chr3_4:27662947-27662966 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 27659158 | 27663448 | 27659158 | ID=Msa0496570;Name=Msa0496570 |
| chr3_4 | mRNA | 27659158 | 27663448 | 27659158 | ID=Msa0496570-mRNA-1;Parent=Msa0496570;Name=Msa0496570-mRNA-1;_AED=0.09;_eAED=0.09;_QI=164|1|1|1|0.66|0.57|7|1122|496 |
| chr3_4 | exon | 27659158 | 27659272 | 27659158 | ID=Msa0496570-mRNA-1:exon:6483;Parent=Msa0496570-mRNA-1 |
| chr3_4 | exon | 27659293 | 27659324 | 27659293 | ID=Msa0496570-mRNA-1:exon:6484;Parent=Msa0496570-mRNA-1 |
| chr3_4 | exon | 27659546 | 27660297 | 27659546 | ID=Msa0496570-mRNA-1:exon:6485;Parent=Msa0496570-mRNA-1 |
| chr3_4 | exon | 27660818 | 27661044 | 27660818 | ID=Msa0496570-mRNA-1:exon:6486;Parent=Msa0496570-mRNA-1 |
| chr3_4 | exon | 27661312 | 27661503 | 27661312 | ID=Msa0496570-mRNA-1:exon:6487;Parent=Msa0496570-mRNA-1 |
| chr3_4 | exon | 27661585 | 27661741 | 27661585 | ID=Msa0496570-mRNA-1:exon:6488;Parent=Msa0496570-mRNA-1 |
| chr3_4 | exon | 27662147 | 27663448 | 27662147 | ID=Msa0496570-mRNA-1:exon:6489;Parent=Msa0496570-mRNA-1 |
| chr3_4 | five_prime_UTR | 27659158 | 27659272 | 27659158 | ID=Msa0496570-mRNA-1:five_prime_utr;Parent=Msa0496570-mRNA-1 |
| chr3_4 | five_prime_UTR | 27659293 | 27659324 | 27659293 | ID=Msa0496570-mRNA-1:five_prime_utr;Parent=Msa0496570-mRNA-1 |
| chr3_4 | five_prime_UTR | 27659546 | 27659562 | 27659546 | ID=Msa0496570-mRNA-1:five_prime_utr;Parent=Msa0496570-mRNA-1 |
| chr3_4 | CDS | 27659563 | 27660297 | 27659563 | ID=Msa0496570-mRNA-1:cds;Parent=Msa0496570-mRNA-1 |
| chr3_4 | CDS | 27660818 | 27661044 | 27660818 | ID=Msa0496570-mRNA-1:cds;Parent=Msa0496570-mRNA-1 |
| chr3_4 | CDS | 27661312 | 27661503 | 27661312 | ID=Msa0496570-mRNA-1:cds;Parent=Msa0496570-mRNA-1 |
| chr3_4 | CDS | 27661585 | 27661741 | 27661585 | ID=Msa0496570-mRNA-1:cds;Parent=Msa0496570-mRNA-1 |
| chr3_4 | CDS | 27662147 | 27662326 | 27662147 | ID=Msa0496570-mRNA-1:cds;Parent=Msa0496570-mRNA-1 |
| chr3_4 | three_prime_UTR | 27662327 | 27663448 | 27662327 | ID=Msa0496570-mRNA-1:three_prime_utr;Parent=Msa0496570-mRNA-1 |
| Gene Sequence |
| Protein sequence |
