AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1242990


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1242990 MtrunA17_Chr8g0357051 93.284 268 12 2 1 262 1 268 8.95e-178 489
Msa1242990 MtrunA17_Chr2g0310191 70.632 269 70 5 1 262 1 267 5.57e-131 371
Msa1242990 MtrunA17_Chr8g0348061 57.143 154 63 2 72 223 92 244 4.98e-65 203
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1242990 AT1G16320.1 69.545 220 66 1 44 262 54 273 4.23e-117 337
Msa1242990 AT1G79510.2 61.484 283 80 6 1 262 1 275 1.24e-116 335
Msa1242990 AT1G79510.1 61.484 283 80 6 1 262 1 275 1.24e-116 335
Msa1242990 AT2G46220.1 57.325 157 64 2 69 223 81 236 3.36e-66 206

Find 70 sgRNAs with CRISPR-Local

Find 240 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATGAAACCGGTTTCGGTTT+TGG 0.220818 8_2:-27666249 Msa1242990:CDS
GACCCTTTGAACACATTTAC+TGG 0.240823 8_2:-27666533 Msa1242990:CDS
AGGTACTTCTCGGTATAAAT+TGG 0.261999 8_2:-27666336 Msa1242990:CDS
AGAAGTACAAGTTGATCTTT+TGG 0.270946 8_2:-27666505 Msa1242990:CDS
ACCTTAATTATGATATTTAT+AGG 0.278702 8_2:-27666992 Msa1242990:intron
ACCTATAAATATCATAATTA+AGG 0.297853 8_2:+27666991 None:intergenic
CCCCATGAAAATGTTGGATT+TGG 0.313331 8_2:+27666200 None:intergenic
TGGATTCTAGTTCATGTTCA+TGG 0.337564 8_2:-27666172 Msa1242990:CDS
GAATAAAGAGTATTGAGAAA+TGG 0.346750 8_2:+27667184 None:intergenic
TGTATAGTATAGATTATAAT+AGG 0.348269 8_2:-27666027 Msa1242990:three_prime_UTR
AATAAAGAGTATTGAGAAAT+GGG 0.349742 8_2:+27667185 None:intergenic
GTTTGGATGTATACAGAATA+TGG 0.351747 8_2:-27666442 Msa1242990:CDS
AGTCAAGAGTGTATATAGAT+AGG 0.353666 8_2:-27665952 Msa1242990:three_prime_UTR
TTGGTGTTTGAATCTTGATT+TGG 0.370847 8_2:+27667226 None:intergenic
TAGGTTAGATGTAATGAATT+TGG 0.393462 8_2:-27666008 Msa1242990:three_prime_UTR
TGTTTATCTTGAGTAGCTAA+TGG 0.394872 8_2:+27667104 None:intergenic
GAAGATGATGAAACCGGTTT+CGG 0.396965 8_2:-27666255 Msa1242990:CDS
GTTGTTACCACCAGATGGTT+TGG 0.412534 8_2:-27666102 Msa1242990:CDS
GTGAATTTCAAGGTACTTCT+CGG 0.412707 8_2:-27666346 Msa1242990:CDS
GGAACTTGAGGGGTGTGCCT+AGG 0.417152 8_2:-27666388 Msa1242990:CDS
TTTGTTTCGTGAGATTGGTT+TGG 0.421815 8_2:-27666459 Msa1242990:CDS
GAACTTGAGGGGTGTGCCTA+GGG 0.426698 8_2:-27666387 Msa1242990:CDS
ACCAAATCCAAAACCGAAAC+CGG 0.442141 8_2:+27666242 None:intergenic
CAACCTGTGCAGTGAAACTT+TGG 0.444081 8_2:+27667141 None:intergenic
AATGTTGGATTTGGACTAGC+AGG 0.451399 8_2:+27666209 None:intergenic
TTTCACTGCACAGGTTGCTC+AGG 0.452221 8_2:-27667135 Msa1242990:CDS
GGGGTGTGCCTAGGGTTCCA+TGG 0.454206 8_2:-27666379 Msa1242990:CDS
GTCAAGAGTGTATATAGATA+GGG 0.462156 8_2:-27665951 Msa1242990:three_prime_UTR
ATAAACCATTCAAAATTCAA+TGG 0.462536 8_2:-27667291 Msa1242990:exon
GGGTGTGCCTAGGGTTCCAT+GGG 0.462556 8_2:-27666378 Msa1242990:CDS
TTGAATCTTGATTTGGATTG+AGG 0.469278 8_2:+27667233 None:intergenic
CAGAGAATGTGATATTGATC+AGG 0.478427 8_2:-27666412 Msa1242990:CDS
TACCAGTAAATGTGTTCAAA+GGG 0.481927 8_2:+27666531 None:intergenic
TCCACAGAAGATGATGAAAC+CGG 0.487224 8_2:-27666261 Msa1242990:CDS
AGTCCAAAGTTTCACTGCAC+AGG 0.490628 8_2:-27667144 Msa1242990:CDS
GAACATGTAGCCAAACCATC+TGG 0.493057 8_2:+27666092 None:intergenic
ATACCAGTAAATGTGTTCAA+AGG 0.496720 8_2:+27666530 None:intergenic
GAAGCTAAAGGTGAATTTCA+AGG 0.517611 8_2:-27666356 Msa1242990:CDS
GCAGTGAAACTTTGGACTAA+AGG 0.527370 8_2:+27667149 None:intergenic
ATCAATATCACATTCTCTGA+AGG 0.533171 8_2:+27666416 None:intergenic
AATTCACCTTTAGCTTCCCA+TGG 0.534577 8_2:+27666362 None:intergenic
GAGAATGTGTGTGTAATTTG+AGG 0.534640 8_2:+27667350 None:intergenic
TTAGCTTCCCATGGAACCCT+AGG 0.536034 8_2:+27666371 None:intergenic
TATTGATCAGGTGGAACTTG+AGG 0.540071 8_2:-27666400 Msa1242990:CDS
AAAGGACCCCATGAAAATGT+TGG 0.541364 8_2:+27666194 None:intergenic
ATTGATCAGGTGGAACTTGA+GGG 0.551874 8_2:-27666399 Msa1242990:CDS
ACCGGTTTCATCATCTTCTG+TGG 0.561359 8_2:+27666260 None:intergenic
GAAAGATTGAGATTGCAAAG+AGG 0.569214 8_2:+27667263 None:intergenic
AGGGTTCCATGGGAAGCTAA+AGG 0.578430 8_2:-27666368 Msa1242990:CDS
TCTTTGCATCCGACCAACAC+TGG 0.582870 8_2:+27665665 None:intergenic
AGGTCTTTAACAAAGATCAA+AGG 0.587544 8_2:+27667011 None:intergenic
AGACAGTTGTTACCACCAGA+TGG 0.589181 8_2:-27666107 Msa1242990:CDS
TTTCTTGTACCAGTGTTGGT+CGG 0.593747 8_2:-27665674 Msa1242990:three_prime_UTR
ATATGCTATACAGATAGAGA+TGG 0.599230 8_2:-27665896 Msa1242990:three_prime_UTR
TCAATTATATATGAAAACCA+TGG 0.604385 8_2:-27665706 Msa1242990:three_prime_UTR
TAAACAGAATCAGCATCAGA+AGG 0.609028 8_2:-27667087 Msa1242990:CDS
AGAATGTGATATTGATCAGG+TGG 0.610163 8_2:-27666409 Msa1242990:CDS
CTTCTCGGTATAAATTGGAT+CGG 0.610878 8_2:-27666331 Msa1242990:CDS
TCAAGCAGTTAAGCACACAT+TGG 0.624208 8_2:-27666138 Msa1242990:CDS
TCTATACTATACATTGTCAA+CGG 0.630114 8_2:+27666037 None:intergenic
CGGTATAAATTGGATCGGAA+CGG 0.634092 8_2:-27666326 Msa1242990:CDS
AGAGTGTATATAGATAGGGA+TGG 0.635655 8_2:-27665947 Msa1242990:three_prime_UTR
GAACATGAACTAGAATCCAA+AGG 0.647700 8_2:+27666176 None:intergenic
TGCTGTTAGAACCCTTCGTG+AGG 0.651000 8_2:-27667039 Msa1242990:CDS
TTGATCAGGTGGAACTTGAG+GGG 0.654298 8_2:-27666398 Msa1242990:CDS
CAAAGGCATATCCTCACGAA+GGG 0.657035 8_2:+27667028 None:intergenic
ATGTTGGATTTGGACTAGCA+GGG 0.662829 8_2:+27666210 None:intergenic
TCAAAGGCATATCCTCACGA+AGG 0.664210 8_2:+27667027 None:intergenic
CATGTAGCCAAACCATCTGG+TGG 0.698747 8_2:+27666095 None:intergenic
TGTTGTTTAAGCATTATGAG+TGG 0.707726 8_2:+27667374 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACCTTAATTATGATATTTAT+AGG - chr8_2:27666020-27666039 Msa1242990:three_prime_UTR 15.0%
!! ACCTATAAATATCATAATTA+AGG + chr8_2:27666024-27666043 None:intergenic 15.0%
!!! TAATTTGAATTGTGTTATTT+AGG - chr8_2:27666100-27666119 Msa1242990:CDS 15.0%
!!! AAAAATTGGATTTTTAATGT+TGG - chr8_2:27666127-27666146 Msa1242990:CDS 15.0%
!!! AAAATTGGATTTTTAATGTT+GGG - chr8_2:27666128-27666147 Msa1242990:CDS 15.0%
!! GATGATGTAATTAATATTTA+TGG - chr8_2:27666166-27666185 Msa1242990:CDS 15.0%
!!! TAAAAAAAGTTAATTTTGAG+TGG - chr8_2:27666368-27666387 Msa1242990:CDS 15.0%
!! TGTATAGTATAGATTATAAT+AGG - chr8_2:27666985-27667004 Msa1242990:intron 15.0%
!! ACCTTAATTATGATATTTAT+AGG - chr8_2:27666020-27666039 Msa1242990:three_prime_UTR 15.0%
!! ACCTATAAATATCATAATTA+AGG + chr8_2:27666024-27666043 None:intergenic 15.0%
!!! TAATTTGAATTGTGTTATTT+AGG - chr8_2:27666100-27666119 Msa1242990:CDS 15.0%
!!! AAAAATTGGATTTTTAATGT+TGG - chr8_2:27666127-27666146 Msa1242990:CDS 15.0%
!!! AAAATTGGATTTTTAATGTT+GGG - chr8_2:27666128-27666147 Msa1242990:CDS 15.0%
!! GATGATGTAATTAATATTTA+TGG - chr8_2:27666166-27666185 Msa1242990:CDS 15.0%
!!! TAAAAAAAGTTAATTTTGAG+TGG - chr8_2:27666368-27666387 Msa1242990:CDS 15.0%
!! TGTATAGTATAGATTATAAT+AGG - chr8_2:27666985-27667004 Msa1242990:intron 15.0%
!! ATAAACCATTCAAAATTCAA+TGG - chr8_2:27665721-27665740 Msa1242990:three_prime_UTR 20.0%
!!! AATAAAGAGTATTGAGAAAT+GGG + chr8_2:27665830-27665849 None:intergenic 20.0%
!! GTTATTTAGGTGAAAAAAAT+TGG - chr8_2:27666113-27666132 Msa1242990:CDS 20.0%
!!! GTGAATATATGGTTTTTAAT+TGG - chr8_2:27666200-27666219 Msa1242990:CDS 20.0%
!!! CTTTTTTTATACATACAAAG+TGG + chr8_2:27666357-27666376 None:intergenic 20.0%
!!! AATTTTGAGTGGAAAAAAAT+TGG - chr8_2:27666379-27666398 Msa1242990:CDS 20.0%
!!! ATTTTGAGTGGAAAAAAATT+GGG - chr8_2:27666380-27666399 Msa1242990:CDS 20.0%
!!! ATGTGTTTTATACATATATG+AGG - chr8_2:27667157-27667176 Msa1242990:CDS 20.0%
!! TCAATTATATATGAAAACCA+TGG - chr8_2:27667306-27667325 Msa1242990:five_prime_UTR 20.0%
!! ATAAACCATTCAAAATTCAA+TGG - chr8_2:27665721-27665740 Msa1242990:three_prime_UTR 20.0%
!!! AATAAAGAGTATTGAGAAAT+GGG + chr8_2:27665830-27665849 None:intergenic 20.0%
!! GTTATTTAGGTGAAAAAAAT+TGG - chr8_2:27666113-27666132 Msa1242990:CDS 20.0%
!!! GTGAATATATGGTTTTTAAT+TGG - chr8_2:27666200-27666219 Msa1242990:CDS 20.0%
!!! CTTTTTTTATACATACAAAG+TGG + chr8_2:27666357-27666376 None:intergenic 20.0%
!!! AATTTTGAGTGGAAAAAAAT+TGG - chr8_2:27666379-27666398 Msa1242990:CDS 20.0%
!!! ATTTTGAGTGGAAAAAAATT+GGG - chr8_2:27666380-27666399 Msa1242990:CDS 20.0%
!!! ATGTGTTTTATACATATATG+AGG - chr8_2:27667157-27667176 Msa1242990:CDS 20.0%
!! TCAATTATATATGAAAACCA+TGG - chr8_2:27667306-27667325 Msa1242990:five_prime_UTR 20.0%
!! AAAAGCCATTGAATTTTGAA+TGG + chr8_2:27665729-27665748 None:intergenic 25.0%
!!! GAATAAAGAGTATTGAGAAA+TGG + chr8_2:27665831-27665850 None:intergenic 25.0%
!! TTATAGGTAATTTTCTCATC+TGG - chr8_2:27666036-27666055 Msa1242990:three_prime_UTR 25.0%
!! TATAGGTAATTTTCTCATCT+GGG - chr8_2:27666037-27666056 Msa1242990:three_prime_UTR 25.0%
! TTGCTTTCGATGTAAATATA+TGG - chr8_2:27666073-27666092 Msa1242990:exon 25.0%
!! TGTTGGGTTTAGTAATTTTA+AGG - chr8_2:27666144-27666163 Msa1242990:CDS 25.0%
!! ACCTTTTAGATGTGAATATA+TGG - chr8_2:27666189-27666208 Msa1242990:CDS 25.0%
! ACCATATATTCACATCTAAA+AGG + chr8_2:27666193-27666212 None:intergenic 25.0%
!! TTATTTTCTGCAAAAAGAGT+TGG - chr8_2:27666406-27666425 Msa1242990:CDS 25.0%
!!! AAGAGTTGGAATTTTAATGT+TGG - chr8_2:27666420-27666439 Msa1242990:CDS 25.0%
!!! AGAGTTGGAATTTTAATGTT+GGG - chr8_2:27666421-27666440 Msa1242990:CDS 25.0%
!!! TTGGGTTTGATAATTTTTCA+GGG - chr8_2:27666439-27666458 Msa1242990:CDS 25.0%
! TCTATACTATACATTGTCAA+CGG + chr8_2:27666978-27666997 None:intergenic 25.0%
! TAGGTTAGATGTAATGAATT+TGG - chr8_2:27667004-27667023 Msa1242990:CDS 25.0%
!! AAAAGCCATTGAATTTTGAA+TGG + chr8_2:27665729-27665748 None:intergenic 25.0%
!!! GAATAAAGAGTATTGAGAAA+TGG + chr8_2:27665831-27665850 None:intergenic 25.0%
!! TTATAGGTAATTTTCTCATC+TGG - chr8_2:27666036-27666055 Msa1242990:three_prime_UTR 25.0%
!! TATAGGTAATTTTCTCATCT+GGG - chr8_2:27666037-27666056 Msa1242990:three_prime_UTR 25.0%
! TTGCTTTCGATGTAAATATA+TGG - chr8_2:27666073-27666092 Msa1242990:exon 25.0%
!! TGTTGGGTTTAGTAATTTTA+AGG - chr8_2:27666144-27666163 Msa1242990:CDS 25.0%
!! ACCTTTTAGATGTGAATATA+TGG - chr8_2:27666189-27666208 Msa1242990:CDS 25.0%
! ACCATATATTCACATCTAAA+AGG + chr8_2:27666193-27666212 None:intergenic 25.0%
!! TTATTTTCTGCAAAAAGAGT+TGG - chr8_2:27666406-27666425 Msa1242990:CDS 25.0%
!!! AAGAGTTGGAATTTTAATGT+TGG - chr8_2:27666420-27666439 Msa1242990:CDS 25.0%
!!! AGAGTTGGAATTTTAATGTT+GGG - chr8_2:27666421-27666440 Msa1242990:CDS 25.0%
!!! TTGGGTTTGATAATTTTTCA+GGG - chr8_2:27666439-27666458 Msa1242990:CDS 25.0%
! TCTATACTATACATTGTCAA+CGG + chr8_2:27666978-27666997 None:intergenic 25.0%
! TAGGTTAGATGTAATGAATT+TGG - chr8_2:27667004-27667023 Msa1242990:CDS 25.0%
! TGTTGTTTAAGCATTATGAG+TGG + chr8_2:27665641-27665660 None:intergenic 30.0%
!! TTGAATCTTGATTTGGATTG+AGG + chr8_2:27665782-27665801 None:intergenic 30.0%
! TTGGTGTTTGAATCTTGATT+TGG + chr8_2:27665789-27665808 None:intergenic 30.0%
!!! GTTTTGAAGAAGAAAGTGTT+TGG + chr8_2:27665808-27665827 None:intergenic 30.0%
TGTTTATCTTGAGTAGCTAA+TGG + chr8_2:27665911-27665930 None:intergenic 30.0%
!! GATGAGTTTTATCTCAATCT+TGG - chr8_2:27665947-27665966 Msa1242990:three_prime_UTR 30.0%
AGGTCTTTAACAAAGATCAA+AGG + chr8_2:27666004-27666023 None:intergenic 30.0%
! CTAATTCTGAGTAACTTGTA+AGG - chr8_2:27666230-27666249 Msa1242990:CDS 30.0%
!! GTTGGGTTTGATAATTTTTC+AGG - chr8_2:27666438-27666457 Msa1242990:CDS 30.0%
TACCAGTAAATGTGTTCAAA+GGG + chr8_2:27666484-27666503 None:intergenic 30.0%
ATACCAGTAAATGTGTTCAA+AGG + chr8_2:27666485-27666504 None:intergenic 30.0%
!!! AGAAGTACAAGTTGATCTTT+TGG - chr8_2:27666507-27666526 Msa1242990:CDS 30.0%
!!! GAAGTACAAGTTGATCTTTT+GGG - chr8_2:27666508-27666527 Msa1242990:CDS 30.0%
!! AGAATTTTGTTTCGTGAGAT+TGG - chr8_2:27666548-27666567 Msa1242990:CDS 30.0%
GTTTGGATGTATACAGAATA+TGG - chr8_2:27666570-27666589 Msa1242990:intron 30.0%
ATCAATATCACATTCTCTGA+AGG + chr8_2:27666599-27666618 None:intergenic 30.0%
! TCCAAATCCAACATTTTCAT+GGG - chr8_2:27666811-27666830 Msa1242990:intron 30.0%
GAAAAAAACAGTTCACTAAG+TGG + chr8_2:27666956-27666975 None:intergenic 30.0%
! AGTCAAGAGTGTATATAGAT+AGG - chr8_2:27667060-27667079 Msa1242990:CDS 30.0%
! GTCAAGAGTGTATATAGATA+GGG - chr8_2:27667061-27667080 Msa1242990:CDS 30.0%
ATATGCTATACAGATAGAGA+TGG - chr8_2:27667116-27667135 Msa1242990:CDS 30.0%
ACAAGAAAAAATGGAAACCA+TGG + chr8_2:27667326-27667345 None:intergenic 30.0%
AACACTGGTACAAGAAAAAA+TGG + chr8_2:27667335-27667354 None:intergenic 30.0%
!!! ATTTTTTCTTGTACCAGTGT+TGG - chr8_2:27667334-27667353 Msa1242990:five_prime_UTR 30.0%
! TGTTGTTTAAGCATTATGAG+TGG + chr8_2:27665641-27665660 None:intergenic 30.0%
!! TTGAATCTTGATTTGGATTG+AGG + chr8_2:27665782-27665801 None:intergenic 30.0%
! TTGGTGTTTGAATCTTGATT+TGG + chr8_2:27665789-27665808 None:intergenic 30.0%
!!! GTTTTGAAGAAGAAAGTGTT+TGG + chr8_2:27665808-27665827 None:intergenic 30.0%
TGTTTATCTTGAGTAGCTAA+TGG + chr8_2:27665911-27665930 None:intergenic 30.0%
!! GATGAGTTTTATCTCAATCT+TGG - chr8_2:27665947-27665966 Msa1242990:three_prime_UTR 30.0%
AGGTCTTTAACAAAGATCAA+AGG + chr8_2:27666004-27666023 None:intergenic 30.0%
! CTAATTCTGAGTAACTTGTA+AGG - chr8_2:27666230-27666249 Msa1242990:CDS 30.0%
!! GTTGGGTTTGATAATTTTTC+AGG - chr8_2:27666438-27666457 Msa1242990:CDS 30.0%
TACCAGTAAATGTGTTCAAA+GGG + chr8_2:27666484-27666503 None:intergenic 30.0%
ATACCAGTAAATGTGTTCAA+AGG + chr8_2:27666485-27666504 None:intergenic 30.0%
!!! AGAAGTACAAGTTGATCTTT+TGG - chr8_2:27666507-27666526 Msa1242990:CDS 30.0%
!!! GAAGTACAAGTTGATCTTTT+GGG - chr8_2:27666508-27666527 Msa1242990:CDS 30.0%
!! AGAATTTTGTTTCGTGAGAT+TGG - chr8_2:27666548-27666567 Msa1242990:CDS 30.0%
GTTTGGATGTATACAGAATA+TGG - chr8_2:27666570-27666589 Msa1242990:intron 30.0%
ATCAATATCACATTCTCTGA+AGG + chr8_2:27666599-27666618 None:intergenic 30.0%
! TCCAAATCCAACATTTTCAT+GGG - chr8_2:27666811-27666830 Msa1242990:intron 30.0%
GAAAAAAACAGTTCACTAAG+TGG + chr8_2:27666956-27666975 None:intergenic 30.0%
! AGTCAAGAGTGTATATAGAT+AGG - chr8_2:27667060-27667079 Msa1242990:CDS 30.0%
! GTCAAGAGTGTATATAGATA+GGG - chr8_2:27667061-27667080 Msa1242990:CDS 30.0%
ATATGCTATACAGATAGAGA+TGG - chr8_2:27667116-27667135 Msa1242990:CDS 30.0%
ACAAGAAAAAATGGAAACCA+TGG + chr8_2:27667326-27667345 None:intergenic 30.0%
AACACTGGTACAAGAAAAAA+TGG + chr8_2:27667335-27667354 None:intergenic 30.0%
!!! ATTTTTTCTTGTACCAGTGT+TGG - chr8_2:27667334-27667353 Msa1242990:five_prime_UTR 30.0%
GAGAATGTGTGTGTAATTTG+AGG + chr8_2:27665665-27665684 None:intergenic 35.0%
GAAAGATTGAGATTGCAAAG+AGG + chr8_2:27665752-27665771 None:intergenic 35.0%
TAAACAGAATCAGCATCAGA+AGG - chr8_2:27665925-27665944 Msa1242990:three_prime_UTR 35.0%
! CAGGGATGATGTAACATTTT+TGG - chr8_2:27666457-27666476 Msa1242990:CDS 35.0%
! TTTGTTTCGTGAGATTGGTT+TGG - chr8_2:27666553-27666572 Msa1242990:CDS 35.0%
CAGAGAATGTGATATTGATC+AGG - chr8_2:27666600-27666619 Msa1242990:intron 35.0%
AGAATGTGATATTGATCAGG+TGG - chr8_2:27666603-27666622 Msa1242990:intron 35.0%
GAAGCTAAAGGTGAATTTCA+AGG - chr8_2:27666656-27666675 Msa1242990:intron 35.0%
! GTGAATTTCAAGGTACTTCT+CGG - chr8_2:27666666-27666685 Msa1242990:intron 35.0%
AGGTACTTCTCGGTATAAAT+TGG - chr8_2:27666676-27666695 Msa1242990:intron 35.0%
CTTCTCGGTATAAATTGGAT+CGG - chr8_2:27666681-27666700 Msa1242990:intron 35.0%
! GTCCAAATCCAACATTTTCA+TGG - chr8_2:27666810-27666829 Msa1242990:intron 35.0%
! CCAAATCCAACATTTTCATG+GGG - chr8_2:27666812-27666831 Msa1242990:intron 35.0%
GAACATGAACTAGAATCCAA+AGG + chr8_2:27666839-27666858 None:intergenic 35.0%
!! TGGATTCTAGTTCATGTTCA+TGG - chr8_2:27666840-27666859 Msa1242990:intron 35.0%
AGAGTGTATATAGATAGGGA+TGG - chr8_2:27667065-27667084 Msa1242990:CDS 35.0%
GAGAATGTGTGTGTAATTTG+AGG + chr8_2:27665665-27665684 None:intergenic 35.0%
GAAAGATTGAGATTGCAAAG+AGG + chr8_2:27665752-27665771 None:intergenic 35.0%
TAAACAGAATCAGCATCAGA+AGG - chr8_2:27665925-27665944 Msa1242990:three_prime_UTR 35.0%
! CAGGGATGATGTAACATTTT+TGG - chr8_2:27666457-27666476 Msa1242990:CDS 35.0%
! TTTGTTTCGTGAGATTGGTT+TGG - chr8_2:27666553-27666572 Msa1242990:CDS 35.0%
CAGAGAATGTGATATTGATC+AGG - chr8_2:27666600-27666619 Msa1242990:intron 35.0%
AGAATGTGATATTGATCAGG+TGG - chr8_2:27666603-27666622 Msa1242990:intron 35.0%
GAAGCTAAAGGTGAATTTCA+AGG - chr8_2:27666656-27666675 Msa1242990:intron 35.0%
! GTGAATTTCAAGGTACTTCT+CGG - chr8_2:27666666-27666685 Msa1242990:intron 35.0%
AGGTACTTCTCGGTATAAAT+TGG - chr8_2:27666676-27666695 Msa1242990:intron 35.0%
CTTCTCGGTATAAATTGGAT+CGG - chr8_2:27666681-27666700 Msa1242990:intron 35.0%
! GTCCAAATCCAACATTTTCA+TGG - chr8_2:27666810-27666829 Msa1242990:intron 35.0%
! CCAAATCCAACATTTTCATG+GGG - chr8_2:27666812-27666831 Msa1242990:intron 35.0%
GAACATGAACTAGAATCCAA+AGG + chr8_2:27666839-27666858 None:intergenic 35.0%
!! TGGATTCTAGTTCATGTTCA+TGG - chr8_2:27666840-27666859 Msa1242990:intron 35.0%
AGAGTGTATATAGATAGGGA+TGG - chr8_2:27667065-27667084 Msa1242990:CDS 35.0%
GCAGTGAAACTTTGGACTAA+AGG + chr8_2:27665866-27665885 None:intergenic 40.0%
TGGCAAATGCCGATATAGTT+AGG - chr8_2:27666264-27666283 Msa1242990:CDS 40.0%
AAATGCCGATATAGTTAGGC+TGG - chr8_2:27666268-27666287 Msa1242990:CDS 40.0%
GACCCTTTGAACACATTTAC+TGG - chr8_2:27666479-27666498 Msa1242990:CDS 40.0%
!! AGTTGATCTTTTGGGCATTG+AGG - chr8_2:27666516-27666535 Msa1242990:CDS 40.0%
!!! TTTTGGGCATTGAGGTTTCA+TGG - chr8_2:27666524-27666543 Msa1242990:CDS 40.0%
TATTGATCAGGTGGAACTTG+AGG - chr8_2:27666612-27666631 Msa1242990:intron 40.0%
ATTGATCAGGTGGAACTTGA+GGG - chr8_2:27666613-27666632 Msa1242990:intron 40.0%
! AATTCACCTTTAGCTTCCCA+TGG + chr8_2:27666653-27666672 None:intergenic 40.0%
CGGTATAAATTGGATCGGAA+CGG - chr8_2:27666686-27666705 Msa1242990:intron 40.0%
TCCACAGAAGATGATGAAAC+CGG - chr8_2:27666751-27666770 Msa1242990:intron 40.0%
! GAAGATGATGAAACCGGTTT+CGG - chr8_2:27666757-27666776 Msa1242990:intron 40.0%
ACCAAATCCAAAACCGAAAC+CGG + chr8_2:27666773-27666792 None:intergenic 40.0%
!! ATGTTGGATTTGGACTAGCA+GGG + chr8_2:27666805-27666824 None:intergenic 40.0%
!! AATGTTGGATTTGGACTAGC+AGG + chr8_2:27666806-27666825 None:intergenic 40.0%
CCCCATGAAAATGTTGGATT+TGG + chr8_2:27666815-27666834 None:intergenic 40.0%
AAAGGACCCCATGAAAATGT+TGG + chr8_2:27666821-27666840 None:intergenic 40.0%
! AACATTTTCATGGGGTCCTT+TGG - chr8_2:27666820-27666839 Msa1242990:intron 40.0%
TCAAGCAGTTAAGCACACAT+TGG - chr8_2:27666874-27666893 Msa1242990:intron 40.0%
!! TTTCTTGTACCAGTGTTGGT+CGG - chr8_2:27667338-27667357 Msa1242990:five_prime_UTR 40.0%
GCAGTGAAACTTTGGACTAA+AGG + chr8_2:27665866-27665885 None:intergenic 40.0%
TGGCAAATGCCGATATAGTT+AGG - chr8_2:27666264-27666283 Msa1242990:CDS 40.0%
AAATGCCGATATAGTTAGGC+TGG - chr8_2:27666268-27666287 Msa1242990:CDS 40.0%
GACCCTTTGAACACATTTAC+TGG - chr8_2:27666479-27666498 Msa1242990:CDS 40.0%
!! AGTTGATCTTTTGGGCATTG+AGG - chr8_2:27666516-27666535 Msa1242990:CDS 40.0%
!!! TTTTGGGCATTGAGGTTTCA+TGG - chr8_2:27666524-27666543 Msa1242990:CDS 40.0%
TATTGATCAGGTGGAACTTG+AGG - chr8_2:27666612-27666631 Msa1242990:intron 40.0%
ATTGATCAGGTGGAACTTGA+GGG - chr8_2:27666613-27666632 Msa1242990:intron 40.0%
! AATTCACCTTTAGCTTCCCA+TGG + chr8_2:27666653-27666672 None:intergenic 40.0%
CGGTATAAATTGGATCGGAA+CGG - chr8_2:27666686-27666705 Msa1242990:intron 40.0%
TCCACAGAAGATGATGAAAC+CGG - chr8_2:27666751-27666770 Msa1242990:intron 40.0%
! GAAGATGATGAAACCGGTTT+CGG - chr8_2:27666757-27666776 Msa1242990:intron 40.0%
ACCAAATCCAAAACCGAAAC+CGG + chr8_2:27666773-27666792 None:intergenic 40.0%
!! ATGTTGGATTTGGACTAGCA+GGG + chr8_2:27666805-27666824 None:intergenic 40.0%
!! AATGTTGGATTTGGACTAGC+AGG + chr8_2:27666806-27666825 None:intergenic 40.0%
CCCCATGAAAATGTTGGATT+TGG + chr8_2:27666815-27666834 None:intergenic 40.0%
AAAGGACCCCATGAAAATGT+TGG + chr8_2:27666821-27666840 None:intergenic 40.0%
! AACATTTTCATGGGGTCCTT+TGG - chr8_2:27666820-27666839 Msa1242990:intron 40.0%
TCAAGCAGTTAAGCACACAT+TGG - chr8_2:27666874-27666893 Msa1242990:intron 40.0%
!! TTTCTTGTACCAGTGTTGGT+CGG - chr8_2:27667338-27667357 Msa1242990:five_prime_UTR 40.0%
AGTCCAAAGTTTCACTGCAC+AGG - chr8_2:27665868-27665887 Msa1242990:three_prime_UTR 45.0%
CAACCTGTGCAGTGAAACTT+TGG + chr8_2:27665874-27665893 None:intergenic 45.0%
! CAAAGGCATATCCTCACGAA+GGG + chr8_2:27665987-27666006 None:intergenic 45.0%
! TCAAAGGCATATCCTCACGA+AGG + chr8_2:27665988-27666007 None:intergenic 45.0%
GGTGTCCAGCCTAACTATAT+CGG + chr8_2:27666276-27666295 None:intergenic 45.0%
TTGATCAGGTGGAACTTGAG+GGG - chr8_2:27666614-27666633 Msa1242990:intron 45.0%
! ACCGGTTTCATCATCTTCTG+TGG + chr8_2:27666755-27666774 None:intergenic 45.0%
!! GATGAAACCGGTTTCGGTTT+TGG - chr8_2:27666763-27666782 Msa1242990:intron 45.0%
!!! ACCGGTTTCGGTTTTGGATT+TGG - chr8_2:27666769-27666788 Msa1242990:intron 45.0%
AGACAGTTGTTACCACCAGA+TGG - chr8_2:27666905-27666924 Msa1242990:intron 45.0%
GTTGTTACCACCAGATGGTT+TGG - chr8_2:27666910-27666929 Msa1242990:intron 45.0%
GAACATGTAGCCAAACCATC+TGG + chr8_2:27666923-27666942 None:intergenic 45.0%
AGTCCAAAGTTTCACTGCAC+AGG - chr8_2:27665868-27665887 Msa1242990:three_prime_UTR 45.0%
CAACCTGTGCAGTGAAACTT+TGG + chr8_2:27665874-27665893 None:intergenic 45.0%
! CAAAGGCATATCCTCACGAA+GGG + chr8_2:27665987-27666006 None:intergenic 45.0%
! TCAAAGGCATATCCTCACGA+AGG + chr8_2:27665988-27666007 None:intergenic 45.0%
GGTGTCCAGCCTAACTATAT+CGG + chr8_2:27666276-27666295 None:intergenic 45.0%
TTGATCAGGTGGAACTTGAG+GGG - chr8_2:27666614-27666633 Msa1242990:intron 45.0%
! ACCGGTTTCATCATCTTCTG+TGG + chr8_2:27666755-27666774 None:intergenic 45.0%
!! GATGAAACCGGTTTCGGTTT+TGG - chr8_2:27666763-27666782 Msa1242990:intron 45.0%
!!! ACCGGTTTCGGTTTTGGATT+TGG - chr8_2:27666769-27666788 Msa1242990:intron 45.0%
AGACAGTTGTTACCACCAGA+TGG - chr8_2:27666905-27666924 Msa1242990:intron 45.0%
GTTGTTACCACCAGATGGTT+TGG - chr8_2:27666910-27666929 Msa1242990:intron 45.0%
GAACATGTAGCCAAACCATC+TGG + chr8_2:27666923-27666942 None:intergenic 45.0%
TTTCACTGCACAGGTTGCTC+AGG - chr8_2:27665877-27665896 Msa1242990:three_prime_UTR 50.0%
TGCTGTTAGAACCCTTCGTG+AGG - chr8_2:27665973-27665992 Msa1242990:three_prime_UTR 50.0%
CTTGTAAGGCCTAGCTCAAC+TGG - chr8_2:27666244-27666263 Msa1242990:CDS 50.0%
AGTCGTTCGAACCTAGGTGA+AGG + chr8_2:27666297-27666316 None:intergenic 50.0%
ACTACGAGTCGTTCGAACCT+AGG + chr8_2:27666303-27666322 None:intergenic 50.0%
TAGGTTCGAACGACTCGTAG+TGG - chr8_2:27666302-27666321 Msa1242990:CDS 50.0%
TTAGCTTCCCATGGAACCCT+AGG + chr8_2:27666644-27666663 None:intergenic 50.0%
AGGGTTCCATGGGAAGCTAA+AGG - chr8_2:27666644-27666663 Msa1242990:intron 50.0%
CATGTAGCCAAACCATCTGG+TGG + chr8_2:27666920-27666939 None:intergenic 50.0%
TCTTTGCATCCGACCAACAC+TGG + chr8_2:27667350-27667369 None:intergenic 50.0%
TTTCACTGCACAGGTTGCTC+AGG - chr8_2:27665877-27665896 Msa1242990:three_prime_UTR 50.0%
TGCTGTTAGAACCCTTCGTG+AGG - chr8_2:27665973-27665992 Msa1242990:three_prime_UTR 50.0%
CTTGTAAGGCCTAGCTCAAC+TGG - chr8_2:27666244-27666263 Msa1242990:CDS 50.0%
AGTCGTTCGAACCTAGGTGA+AGG + chr8_2:27666297-27666316 None:intergenic 50.0%
ACTACGAGTCGTTCGAACCT+AGG + chr8_2:27666303-27666322 None:intergenic 50.0%
TAGGTTCGAACGACTCGTAG+TGG - chr8_2:27666302-27666321 Msa1242990:CDS 50.0%
TTAGCTTCCCATGGAACCCT+AGG + chr8_2:27666644-27666663 None:intergenic 50.0%
AGGGTTCCATGGGAAGCTAA+AGG - chr8_2:27666644-27666663 Msa1242990:intron 50.0%
CATGTAGCCAAACCATCTGG+TGG + chr8_2:27666920-27666939 None:intergenic 50.0%
TCTTTGCATCCGACCAACAC+TGG + chr8_2:27667350-27667369 None:intergenic 50.0%
CGGCATTTGCCAGTTGAGCT+AGG + chr8_2:27666256-27666275 None:intergenic 55.0%
TAGGCTGGACACCTTCACCT+AGG - chr8_2:27666283-27666302 Msa1242990:CDS 55.0%
! TCGAACGACTCGTAGTGGAG+TGG - chr8_2:27666307-27666326 Msa1242990:CDS 55.0%
! GAACTTGAGGGGTGTGCCTA+GGG - chr8_2:27666625-27666644 Msa1242990:intron 55.0%
CGGCATTTGCCAGTTGAGCT+AGG + chr8_2:27666256-27666275 None:intergenic 55.0%
TAGGCTGGACACCTTCACCT+AGG - chr8_2:27666283-27666302 Msa1242990:CDS 55.0%
! TCGAACGACTCGTAGTGGAG+TGG - chr8_2:27666307-27666326 Msa1242990:CDS 55.0%
! GAACTTGAGGGGTGTGCCTA+GGG - chr8_2:27666625-27666644 Msa1242990:intron 55.0%
! GGAACTTGAGGGGTGTGCCT+AGG - chr8_2:27666624-27666643 Msa1242990:intron 60.0%
GGGTGTGCCTAGGGTTCCAT+GGG - chr8_2:27666634-27666653 Msa1242990:intron 60.0%
! GGAACTTGAGGGGTGTGCCT+AGG - chr8_2:27666624-27666643 Msa1242990:intron 60.0%
GGGTGTGCCTAGGGTTCCAT+GGG - chr8_2:27666634-27666653 Msa1242990:intron 60.0%
GGGGTGTGCCTAGGGTTCCA+TGG - chr8_2:27666633-27666652 Msa1242990:intron 65.0%
GGGGTGTGCCTAGGGTTCCA+TGG - chr8_2:27666633-27666652 Msa1242990:intron 65.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 27665631 27667403 27665631 ID=Msa1242990;Name=Msa1242990
chr8_2 mRNA 27665631 27667403 27665631 ID=Msa1242990-mRNA-1;Parent=Msa1242990;Name=Msa1242990-mRNA-1;_AED=0.00;_eAED=0.00;_QI=109|1|1|1|1|1|2|457|262
chr8_2 exon 27665631 27666574 27665631 ID=Msa1242990-mRNA-1:exon:9765;Parent=Msa1242990-mRNA-1
chr8_2 exon 27666993 27667403 27666993 ID=Msa1242990-mRNA-1:exon:9764;Parent=Msa1242990-mRNA-1
chr8_2 five_prime_UTR 27667295 27667403 27667295 ID=Msa1242990-mRNA-1:five_prime_utr;Parent=Msa1242990-mRNA-1
chr8_2 CDS 27666993 27667294 27666993 ID=Msa1242990-mRNA-1:cds;Parent=Msa1242990-mRNA-1
chr8_2 CDS 27666088 27666574 27666088 ID=Msa1242990-mRNA-1:cds;Parent=Msa1242990-mRNA-1
chr8_2 three_prime_UTR 27665631 27666087 27665631 ID=Msa1242990-mRNA-1:three_prime_utr;Parent=Msa1242990-mRNA-1
Gene Sequence

>Msa1242990

ATGGCTTTTCCTCTTTGCAATCTCAATCTTTCTCTTTTACCTCAATCCAAATCAAGATTCAAACACCAAACACTTTCTTCTTCAAAACCCATTTCTCAATACTCTTTATTCTTCTCTTCTTCTCCTTTAGTCCAAAGTTTCACTGCACAGGTTGCTCAGGTGAATTCACCATTAGCTACTCAAGATAAACAGAATCAGCATCAGAAGGATGAGTTTTATCTCAATCTTGGTGTTGCTGTTAGAACCCTTCGTGAGGATATGCCTTTGATCTTTGTTAAAGACCTTAATTATGATATTTATAGGGATGATGTAACATTTTTGGACCCTTTGAACACATTTACTGGTATTGAGAAGTACAAGTTGATCTTTTGGGCATTGAGGTTTCATGGTAGAATTTTGTTTCGTGAGATTGGTTTGGATGTATACAGAATATGGCAGCCTTCAGAGAATGTGATATTGATCAGGTGGAACTTGAGGGGTGTGCCTAGGGTTCCATGGGAAGCTAAAGGTGAATTTCAAGGTACTTCTCGGTATAAATTGGATCGGAACGGTAAGATTTATGAACACAAAGTTGATAATTTAGCATTCAACTTTCCACAGAAGATGATGAAACCGGTTTCGGTTTTGGATTTGGTTACTGCTTGCCCTGCTAGTCCAAATCCAACATTTTCATGGGGTCCTTTGGATTCTAGTTCATGTTCATGGATAGAATTATATCAAGCAGTTAAGCACACATTGGATGAAGAAAGACAGTTGTTACCACCAGATGGTTTGGCTACATGTTCATAG

Protein sequence

>Msa1242990

MAFPLCNLNLSLLPQSKSRFKHQTLSSSKPISQYSLFFSSSPLVQSFTAQVAQVNSPLATQDKQNQHQKDEFYLNLGVAVRTLREDMPLIFVKDLNYDIYRDDVTFLDPLNTFTGIEKYKLIFWALRFHGRILFREIGLDVYRIWQPSENVILIRWNLRGVPRVPWEAKGEFQGTSRYKLDRNGKIYEHKVDNLAFNFPQKMMKPVSVLDLVTACPASPNPTFSWGPLDSSSCSWIELYQAVKHTLDEERQLLPPDGLATCS*