Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1347650 | RHN58869.1 | 100.000 | 133 | 0 | 0 | 1 | 133 | 163 | 295 | 4.76e-93 | 281 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1347650 | sp|Q0WTP1|AUG7_ARATH | 84.091 | 132 | 20 | 1 | 1 | 131 | 198 | 329 | 2.60e-78 | 237 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1347650 | A0A396HZW9 | 100.000 | 133 | 0 | 0 | 1 | 133 | 163 | 295 | 2.27e-93 | 281 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001450 | Msa1347650 | 0.807194 | 5.692729e-50 | -8.615850e-47 |
| Msa1347650 | Msa1367590 | 0.800166 | 1.637381e-48 | -8.615850e-47 |
| Msa1347650 | Msa1375560 | 0.807861 | 4.110723e-50 | -8.615850e-47 |
| Msa1347650 | Msa1440880 | 0.805975 | 1.029641e-49 | -8.615850e-47 |
| Msa1347650 | Msa1446810 | 0.803865 | 2.842837e-49 | -8.615850e-47 |
| Msa1347650 | Msa1446820 | 0.813142 | 2.972792e-51 | -8.615850e-47 |
| Msa1347650 | Msa1451160 | 0.821454 | 4.003749e-53 | -8.615850e-47 |
| Msa1347650 | Msa1464810 | 0.806356 | 8.561741e-50 | -8.615850e-47 |
| Msa0630120 | Msa1347650 | 0.925286 | 2.254363e-90 | -8.615850e-47 |
| Msa0638480 | Msa1347650 | 0.820903 | 5.363036e-53 | -8.615850e-47 |
| Msa0669520 | Msa1347650 | 0.809393 | 1.934643e-50 | -8.615850e-47 |
| Msa0697160 | Msa1347650 | 0.802174 | 6.359452e-49 | -8.615850e-47 |
| Msa0223080 | Msa1347650 | 0.810600 | 1.063286e-50 | -8.615850e-47 |
| Msa1251160 | Msa1347650 | 0.821937 | 3.095045e-53 | -8.615850e-47 |
| Msa0427120 | Msa1347650 | 0.806712 | 7.199093e-50 | -8.615850e-47 |
| Msa0479170 | Msa1347650 | 0.831980 | 1.226936e-55 | -8.615850e-47 |
| Msa0479200 | Msa1347650 | 0.800443 | 1.437672e-48 | -8.615850e-47 |
| Msa1066490 | Msa1347650 | 0.806363 | 8.529245e-50 | -8.615850e-47 |
| Msa1078170 | Msa1347650 | 0.821271 | 4.411284e-53 | -8.615850e-47 |
| Msa1079230 | Msa1347650 | 0.800066 | 1.715425e-48 | -8.615850e-47 |
| Msa1093840 | Msa1347650 | 0.823370 | 1.436960e-53 | -8.615850e-47 |
| Msa0300270 | Msa1347650 | 0.812228 | 4.712735e-51 | -8.615850e-47 |
| Msa0300320 | Msa1347650 | 0.805603 | 1.232834e-49 | -8.615850e-47 |
| Msa0302160 | Msa1347650 | 0.814383 | 1.584140e-51 | -8.615850e-47 |
| Msa0339490 | Msa1347650 | 0.815760 | 7.839481e-52 | -8.615850e-47 |
| Msa0339500 | Msa1347650 | 0.814035 | 1.890861e-51 | -8.615850e-47 |
| Msa0341690 | Msa1347650 | 0.800105 | 1.684469e-48 | -8.615850e-47 |
| Msa1124110 | Msa1347650 | 0.830253 | 3.259308e-55 | -8.615850e-47 |
| Msa1168950 | Msa1347650 | 0.813250 | 2.815170e-51 | -8.615850e-47 |
| Msa1169040 | Msa1347650 | 0.809929 | 1.484316e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1347650 | MtrunA17_Chr4g0007061 | 100.000 | 133 | 0 | 0 | 1 | 133 | 163 | 295 | 4.37e-97 | 281 |
| Msa1347650 | MtrunA17_Chr6g0469531 | 100.000 | 133 | 0 | 0 | 1 | 133 | 198 | 330 | 1.88e-96 | 280 |
| Msa1347650 | MtrunA17_Chr5g0419991 | 100.000 | 133 | 0 | 0 | 1 | 133 | 193 | 325 | 2.51e-96 | 280 |
| Msa1347650 | MtrunA17_Chr2g0316451 | 86.517 | 89 | 12 | 0 | 44 | 132 | 1 | 89 | 3.11e-51 | 157 |
| Msa1347650 | MtrunA17_Chr2g0316471 | 86.111 | 36 | 5 | 0 | 1 | 36 | 265 | 300 | 8.97e-16 | 71.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1347650 | AT5G17620.1 | 84.091 | 132 | 20 | 1 | 1 | 131 | 198 | 329 | 2.65e-79 | 237 |
Find 39 sgRNAs with CRISPR-Local
Find 232 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAATGTTCTAGCTGTTTCT+AGG | 0.248603 | tig0009970:+15424 | Msa1347650:intergenic |
| TCGCACGCTGCGCTTGCTTT+TGG | 0.265845 | tig0009970:-12466 | Msa1347650:CDS |
| ATCTCAACTGCGGGCACATT+TGG | 0.284011 | tig0009970:-15454 | Msa1347650:CDS |
| ACCAGCTGCCAATCGGTTAT+TGG | 0.321126 | tig0009970:-14134 | Msa1347650:CDS |
| ATACAAAAGAATAAGACTTC+AGG | 0.364826 | tig0009970:+12277 | Msa1347650:intergenic |
| ACCTCAGTGTACTCCTCATC+TGG | 0.381852 | tig0009970:+15480 | Msa1347650:intergenic |
| ACAGTCATAAATCGAGATCT+TGG | 0.417585 | tig0009970:-12376 | Msa1347650:CDS |
| CTCTCCATGTTCACGAGCAA+TGG | 0.449246 | tig0009970:+12339 | Msa1347650:intergenic |
| TTTGGATCCTCTGAAACATC+AGG | 0.459453 | tig0009970:-12448 | Msa1347650:CDS |
| TACAAAAGAATAAGACTTCA+GGG | 0.466718 | tig0009970:+12278 | Msa1347650:intergenic |
| TGCATTATCCATAGGAACTT+AGG | 0.468253 | tig0009970:-12166 | Msa1347650:three_prime_UTR |
| TCCAATAACCGATTGGCAGC+TGG | 0.475902 | tig0009970:+14133 | Msa1347650:intergenic |
| ACACTAAGCCTAAGTTCCTA+TGG | 0.477818 | tig0009970:+12158 | Msa1347650:intergenic |
| GCTTCCATTGCTCGTGAACA+TGG | 0.492879 | tig0009970:-12343 | Msa1347650:CDS |
| GGTTCGGACCAGCTGCCAAT+CGG | 0.534989 | tig0009970:-14141 | Msa1347650:CDS |
| GGCGTACAAAATGCTTCTAA+AGG | 0.537057 | tig0009970:-14110 | Msa1347650:intron |
| GTTCCACAACTACATGGGTT+CGG | 0.537879 | tig0009970:-14157 | Msa1347650:CDS |
| ATGGAGGTTCCACAACTACA+TGG | 0.544282 | tig0009970:-14163 | Msa1347650:CDS |
| TCGTCCATGGACACATATGA+TGG | 0.548384 | tig0009970:-14182 | Msa1347650:CDS |
| TGAGGTGGAATCTCAACTGC+GGG | 0.561771 | tig0009970:-15463 | Msa1347650:CDS |
| ACCTCCATCATATGTGTCCA+TGG | 0.562139 | tig0009970:+14178 | Msa1347650:intergenic |
| TGAATAGCTGCATTATCCAT+AGG | 0.575883 | tig0009970:-12174 | Msa1347650:three_prime_UTR |
| GCGAGTCTCTTAGATTCTGT+AGG | 0.577290 | tig0009970:+12485 | Msa1347650:intergenic |
| ATTATTCTTGAGACAGAAGA+CGG | 0.584759 | tig0009970:+12421 | Msa1347650:intergenic |
| GTACGCCTCCAATAACCGAT+TGG | 0.588633 | tig0009970:+14126 | Msa1347650:intergenic |
| CGGCCCTCCTGATGTTTCAG+AGG | 0.590799 | tig0009970:+12441 | Msa1347650:intergenic |
| ATGTTCACGAGCAATGGAAG+CGG | 0.593084 | tig0009970:+12345 | Msa1347650:intergenic |
| TTGTGTAGGAAATTCGTCCA+TGG | 0.601904 | tig0009970:-14195 | Msa1347650:intron |
| AGCTGCCAATCGGTTATTGG+AGG | 0.604664 | tig0009970:-14131 | Msa1347650:CDS |
| ATTCAACATGATTTACACCA+AGG | 0.609705 | tig0009970:-15406 | Msa1347650:intron |
| GGTCCGAACCCATGTAGTTG+TGG | 0.617719 | tig0009970:+14154 | Msa1347650:intergenic |
| AGATGAGGAGTACACTGAGG+TGG | 0.635027 | tig0009970:-15478 | Msa1347650:CDS |
| GGATCCTCTGAAACATCAGG+AGG | 0.638889 | tig0009970:-12445 | Msa1347650:CDS |
| GCATGCTTATAATCCAGATG+AGG | 0.661424 | tig0009970:-15493 | Msa1347650:CDS |
| TGGAGGTTCCACAACTACAT+GGG | 0.663707 | tig0009970:-14162 | Msa1347650:CDS |
| TCCATGGACACATATGATGG+AGG | 0.684377 | tig0009970:-14179 | Msa1347650:CDS |
| GATCCTCTGAAACATCAGGA+GGG | 0.696492 | tig0009970:-12444 | Msa1347650:CDS |
| CTGAGGTGGAATCTCAACTG+CGG | 0.711659 | tig0009970:-15464 | Msa1347650:CDS |
| TCCAGATGAGGAGTACACTG+AGG | 0.761993 | tig0009970:-15481 | Msa1347650:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ACTAAATCTTTATTTGAATA+GGG | + | tig0009970:12257-12276 | Msa1347650:intergenic | 15.0% |
| !!! | GTTTATATTTTCAAATAATG+AGG | + | tig0009970:12724-12743 | Msa1347650:intergenic | 15.0% |
| !! | AATAATTTAAACACTATCAT+AGG | + | tig0009970:13536-13555 | Msa1347650:intergenic | 15.0% |
| !! | ACAAATTTACTATATTAACA+AGG | + | tig0009970:15052-15071 | Msa1347650:intergenic | 15.0% |
| !!! | CACTAAATCTTTATTTGAAT+AGG | + | tig0009970:12258-12277 | Msa1347650:intergenic | 20.0% |
| !! | TATAAGTGAATAAACAACTA+TGG | - | tig0009970:12281-12300 | Msa1347650:three_prime_UTR | 20.0% |
| !! | TTAATTGTGATGAAATAAGA+AGG | - | tig0009970:12497-12516 | Msa1347650:CDS | 20.0% |
| !! | TAAACTTCATATTAGAATTC+TGG | - | tig0009970:12609-12628 | Msa1347650:intron | 20.0% |
| !! | TCAAATAATGAGGTTAAATT+TGG | + | tig0009970:12714-12733 | Msa1347650:intergenic | 20.0% |
| !! | TAGCTAAGTTAAAACAAATT+TGG | + | tig0009970:13125-13144 | Msa1347650:intergenic | 20.0% |
| !! | AGAAATATTATCCACAAATA+TGG | - | tig0009970:13620-13639 | Msa1347650:intron | 20.0% |
| !! | TATTCAAATAAAATCATGCA+TGG | + | tig0009970:13675-13694 | Msa1347650:intergenic | 20.0% |
| !! | ATCAACTAAAATTTCAAGAT+GGG | + | tig0009970:13970-13989 | Msa1347650:intergenic | 20.0% |
| !! | AATCAACTAAAATTTCAAGA+TGG | + | tig0009970:13971-13990 | Msa1347650:intergenic | 20.0% |
| !! | TTGTATTGAACATGAAAATA+TGG | - | tig0009970:14120-14139 | Msa1347650:CDS | 20.0% |
| !! | TATCTGTTTAATCATTATCA+TGG | - | tig0009970:14204-14223 | Msa1347650:intron | 20.0% |
| !! | ATCTGTTTAATCATTATCAT+GGG | - | tig0009970:14205-14224 | Msa1347650:intron | 20.0% |
| !!! | TGATATAGTAGATAACTTTT+TGG | - | tig0009970:14514-14533 | Msa1347650:intron | 20.0% |
| ! | GTTGATTGAATCAGATAATA+GGG | + | tig0009970:12235-12254 | Msa1347650:intergenic | 25.0% |
| !! | GTTTATCCTAAATCTGTTTT+AGG | + | tig0009970:12594-12613 | Msa1347650:intergenic | 25.0% |
| ! | GTGTTAAAATATTGAATGCA+GGG | + | tig0009970:12644-12663 | Msa1347650:intergenic | 25.0% |
| ! | TGTGTTAAAATATTGAATGC+AGG | + | tig0009970:12645-12664 | Msa1347650:intergenic | 25.0% |
| !! | TGAATCCAATATCTAGAATT+CGG | - | tig0009970:12840-12859 | Msa1347650:intron | 25.0% |
| !!! | ACTAAGGTTGATGAAATAAA+AGG | - | tig0009970:13018-13037 | Msa1347650:intron | 25.0% |
| ! | ATAAAAGGAATCTCAACAAA+AGG | - | tig0009970:13033-13052 | Msa1347650:intron | 25.0% |
| ! | CTTCAATAGTGAATTATACA+TGG | + | tig0009970:13177-13196 | Msa1347650:intergenic | 25.0% |
| ! | CATGTATAATTCACTATTGA+AGG | - | tig0009970:13175-13194 | Msa1347650:intron | 25.0% |
| ! | TTCAATCTTTACAATTCATG+TGG | - | tig0009970:13248-13267 | Msa1347650:intron | 25.0% |
| ! | TCAATCTTTACAATTCATGT+GGG | - | tig0009970:13249-13268 | Msa1347650:intron | 25.0% |
| ! | ATAAAAGATAGTTGTTGTGT+AGG | - | tig0009970:13372-13391 | Msa1347650:intron | 25.0% |
| !!! | AAAATATTTTTGCGAAGCAT+GGG | + | tig0009970:13505-13524 | Msa1347650:intergenic | 25.0% |
| !!! | AAAAATATTTTTGCGAAGCA+TGG | + | tig0009970:13506-13525 | Msa1347650:intergenic | 25.0% |
| !!! | GATTAGCTTGAAGTAATAAA+AGG | + | tig0009970:13650-13669 | Msa1347650:intergenic | 25.0% |
| ! | GATTAGATACTATAAAATCG+AGG | + | tig0009970:13787-13806 | Msa1347650:intergenic | 25.0% |
| !!! | AACTAGTTTGATTTTGTTGA+TGG | - | tig0009970:13999-14018 | Msa1347650:intron | 25.0% |
| ! | TACTTTGTACCAATAAATGT+CGG | - | tig0009970:14083-14102 | Msa1347650:intron | 25.0% |
| ! | ATGAAAATATGGTGATCAAA+TGG | - | tig0009970:14131-14150 | Msa1347650:CDS | 25.0% |
| ! | GAGAAACTTTATTGTCAATT+CGG | - | tig0009970:14172-14191 | Msa1347650:CDS | 25.0% |
| !! | ATTTTCGAAATGTTCTTATG+TGG | - | tig0009970:14278-14297 | Msa1347650:intron | 25.0% |
| ! | AGTAAACAATGACAAAACTT+TGG | - | tig0009970:14406-14425 | Msa1347650:intron | 25.0% |
| ! | GTAAACAATGACAAAACTTT+GGG | - | tig0009970:14407-14426 | Msa1347650:intron | 25.0% |
| !! | TGGATCTATGTGAAATTTTA+TGG | - | tig0009970:14534-14553 | Msa1347650:intron | 25.0% |
| ! | TAGGAAAAATAAGATGAGTA+AGG | - | tig0009970:14651-14670 | Msa1347650:intron | 25.0% |
| ! | AGGAAAAATAAGATGAGTAA+GGG | - | tig0009970:14652-14671 | Msa1347650:intron | 25.0% |
| ! | TAAGATATTCATCCTTATGT+AGG | - | tig0009970:14829-14848 | Msa1347650:intron | 25.0% |
| ! | AAATAAAAGCAACCTACATA+AGG | + | tig0009970:14844-14863 | Msa1347650:intergenic | 25.0% |
| ! | TTAGTGTACCAAATTGTAAA+CGG | - | tig0009970:14966-14985 | Msa1347650:intron | 25.0% |
| ! | TACAAAAGAATAAGACTTCA+GGG | + | tig0009970:15306-15325 | Msa1347650:intergenic | 25.0% |
| ! | ATACAAAAGAATAAGACTTC+AGG | + | tig0009970:15307-15326 | Msa1347650:intergenic | 25.0% |
| ! | TTAAAAATCACAGTTTAAGC+TGG | - | tig0009970:15477-15496 | Msa1347650:CDS | 25.0% |
| ATTCAACATGATTTACACCA+AGG | - | tig0009970:12175-12194 | Msa1347650:three_prime_UTR | 30.0% | |
| TAACACATTAGAGCAAAGTA+TGG | + | tig0009970:12206-12225 | Msa1347650:intergenic | 30.0% | |
| GGTTGATTGAATCAGATAAT+AGG | + | tig0009970:12236-12255 | Msa1347650:intergenic | 30.0% | |
| ACAGTCATCAACATACATAT+AGG | + | tig0009970:12381-12400 | Msa1347650:intergenic | 30.0% | |
| !!! | TAGGTAGTGGTTTTAATGTT+TGG | + | tig0009970:12404-12423 | Msa1347650:intergenic | 30.0% |
| AAACATTAAAACCACTACCT+AGG | - | tig0009970:12403-12422 | Msa1347650:CDS | 30.0% | |
| ATCTAGATCGTAGAAAAAAG+CGG | - | tig0009970:12552-12571 | Msa1347650:intron | 30.0% | |
| ! | TTTTGGCCTAAAACAGATTT+AGG | - | tig0009970:12585-12604 | Msa1347650:intron | 30.0% |
| ! | TTTTAACACATCAACACAGT+CGG | - | tig0009970:12655-12674 | Msa1347650:intron | 30.0% |
| ! | GAATCCAATATCTAGAATTC+GGG | - | tig0009970:12841-12860 | Msa1347650:intron | 30.0% |
| TCAAGATATCTTACACACTT+AGG | - | tig0009970:12969-12988 | Msa1347650:intron | 30.0% | |
| AAACCCTTGCAAAGAAATAA+AGG | - | tig0009970:13061-13080 | Msa1347650:intron | 30.0% | |
| TTCTGCAATAAACTTCTGAT+AGG | + | tig0009970:13604-13623 | Msa1347650:intergenic | 30.0% | |
| TAAAAGGTTCTCCATATTTG+TGG | + | tig0009970:13634-13653 | Msa1347650:intergenic | 30.0% | |
| ATAAAATCGAGGAGGAATAA+AGG | + | tig0009970:13776-13795 | Msa1347650:intergenic | 30.0% | |
| TAGATACTATAAAATCGAGG+AGG | + | tig0009970:13784-13803 | Msa1347650:intergenic | 30.0% | |
| ATGCAAAAAGGATTGTAAAG+AGG | - | tig0009970:13922-13941 | Msa1347650:intron | 30.0% | |
| TGCAAAAAGGATTGTAAAGA+GGG | - | tig0009970:13923-13942 | Msa1347650:intron | 30.0% | |
| AAACTTTATTGTCAATTCGG+CGG | - | tig0009970:14175-14194 | Msa1347650:CDS | 30.0% | |
| TACACTCGATGAATTGATAA+TGG | + | tig0009970:14246-14265 | Msa1347650:intergenic | 30.0% | |
| !! | ACACAATTGGCTATTTCTAT+GGG | + | tig0009970:14367-14386 | Msa1347650:intergenic | 30.0% |
| !! | AACACAATTGGCTATTTCTA+TGG | + | tig0009970:14368-14387 | Msa1347650:intergenic | 30.0% |
| ATTCTAGTATATTGAGACTC+AGG | - | tig0009970:14720-14739 | Msa1347650:intron | 30.0% | |
| TTCTAGTATATTGAGACTCA+GGG | - | tig0009970:14721-14740 | Msa1347650:intron | 30.0% | |
| !!! | AGAGAGTATTTTTTGTCTGT+AGG | - | tig0009970:14791-14810 | Msa1347650:intron | 30.0% |
| CTAAGAATCCGTTTACAATT+TGG | + | tig0009970:14977-14996 | Msa1347650:intergenic | 30.0% | |
| ! | TTTGTCTGCAACAGTTTTTA+GGG | - | tig0009970:15071-15090 | Msa1347650:intron | 30.0% |
| ATTATTCTTGAGACAGAAGA+CGG | + | tig0009970:15163-15182 | Msa1347650:intergenic | 30.0% | |
| !! | TGAATGTTCTAGCTGTTTCT+AGG | + | tig0009970:12160-12179 | Msa1347650:intergenic | 35.0% |
| AGTAGCCATTTGATCAAGAT+CGG | - | tig0009970:12683-12702 | Msa1347650:intron | 35.0% | |
| TCCTACAAGATAGACTTGTA+TGG | - | tig0009970:12881-12900 | Msa1347650:intron | 35.0% | |
| ACCATACAAGTCTATCTTGT+AGG | + | tig0009970:12885-12904 | Msa1347650:intergenic | 35.0% | |
| TACAAGATAGACTTGTATGG+TGG | - | tig0009970:12884-12903 | Msa1347650:intron | 35.0% | |
| ACAAGATAGACTTGTATGGT+GGG | - | tig0009970:12885-12904 | Msa1347650:intron | 35.0% | |
| ! | CCTCCTTTATTTCTTTGCAA+GGG | + | tig0009970:13067-13086 | Msa1347650:intergenic | 35.0% |
| CCTTGCAAAGAAATAAAGGA+GGG | - | tig0009970:13065-13084 | Msa1347650:intron | 35.0% | |
| GAGATAGTCTACAAGACAAT+AGG | + | tig0009970:13823-13842 | Msa1347650:intergenic | 35.0% | |
| AGACACTTAAACATTCAGAC+GGG | + | tig0009970:13876-13895 | Msa1347650:intergenic | 35.0% | |
| CAGACACTTAAACATTCAGA+CGG | + | tig0009970:13877-13896 | Msa1347650:intergenic | 35.0% | |
| AAACACATGCAGATGCAAAA+AGG | - | tig0009970:13910-13929 | Msa1347650:intron | 35.0% | |
| AAAAAGGATTGTAAAGAGGG+AGG | - | tig0009970:13926-13945 | Msa1347650:intron | 35.0% | |
| TTTGTACCAATAAATGTCGG+AGG | - | tig0009970:14086-14105 | Msa1347650:intron | 35.0% | |
| AGAAATCCTCCGACATTTAT+TGG | + | tig0009970:14095-14114 | Msa1347650:intergenic | 35.0% | |
| AACTTTATTGTCAATTCGGC+GGG | - | tig0009970:14176-14195 | Msa1347650:CDS | 35.0% | |
| GAAATGTTCTTATGTGGCTA+GGG | - | tig0009970:14284-14303 | Msa1347650:intron | 35.0% | |
| ATGACAAAACTTTGGGTGTT+TGG | - | tig0009970:14414-14433 | Msa1347650:intron | 35.0% | |
| TGACAAAACTTTGGGTGTTT+GGG | - | tig0009970:14415-14434 | Msa1347650:intron | 35.0% | |
| TGACACACTTTGAATCTGTT+AGG | - | tig0009970:14561-14580 | Msa1347650:intron | 35.0% | |
| AACATAAATTCCCACATCGT+GGG | + | tig0009970:14632-14651 | Msa1347650:intergenic | 35.0% | |
| TAACATAAATTCCCACATCG+TGG | + | tig0009970:14633-14652 | Msa1347650:intergenic | 35.0% | |
| ACGATGTGGGAATTTATGTT+AGG | - | tig0009970:14632-14651 | Msa1347650:intron | 35.0% | |
| AATCATCTTGGGGATAATTC+TGG | - | tig0009970:14766-14785 | Msa1347650:intron | 35.0% | |
| ATCATCTTGGGGATAATTCT+GGG | - | tig0009970:14767-14786 | Msa1347650:intron | 35.0% | |
| ! | TATACTCCTTTTTCCGTTAC+TGG | - | tig0009970:14874-14893 | Msa1347650:intron | 35.0% |
| AATCAGATTATGATGCGAAC+CGG | + | tig0009970:14925-14944 | Msa1347650:intergenic | 35.0% | |
| ! | GTTTGTCTGCAACAGTTTTT+AGG | - | tig0009970:15070-15089 | Msa1347650:intron | 35.0% |
| ACAGTCATAAATCGAGATCT+TGG | - | tig0009970:15205-15224 | Msa1347650:intron | 35.0% | |
| TGAATAGCTGCATTATCCAT+AGG | - | tig0009970:15407-15426 | Msa1347650:CDS | 35.0% | |
| TGCATTATCCATAGGAACTT+AGG | - | tig0009970:15415-15434 | Msa1347650:CDS | 35.0% | |
| AGCAAAGTATGGTCAAACCT+TGG | + | tig0009970:12195-12214 | Msa1347650:intergenic | 40.0% | |
| ATCAACCAGAGATATAGCCT+AGG | + | tig0009970:12423-12442 | Msa1347650:intergenic | 40.0% | |
| ! | GCTATATCTCTGGTTGATGT+GGG | - | tig0009970:12425-12444 | Msa1347650:CDS | 40.0% |
| TAGATCGTAGAAAAAAGCGG+TGG | - | tig0009970:12555-12574 | Msa1347650:intron | 40.0% | |
| ! | AAAGCGGTGGAAAGAGATTT+TGG | - | tig0009970:12568-12587 | Msa1347650:intron | 40.0% |
| ACCATCCGATCTTGATCAAA+TGG | + | tig0009970:12691-12710 | Msa1347650:intergenic | 40.0% | |
| GTGAACCATCAGATCAAGAT+CGG | - | tig0009970:12766-12785 | Msa1347650:intron | 40.0% | |
| ATTCACGCAGTCAAGTTCAT+TGG | + | tig0009970:12799-12818 | Msa1347650:intergenic | 40.0% | |
| GATATTGGATTCACAGCAGT+TGG | + | tig0009970:12833-12852 | Msa1347650:intergenic | 40.0% | |
| GAAGCCCGAATTCTAGATAT+TGG | + | tig0009970:12848-12867 | Msa1347650:intergenic | 40.0% | |
| TTTCCTAAGTAGAACTCACG+AGG | + | tig0009970:12926-12945 | Msa1347650:intergenic | 40.0% | |
| AGAATTCTCACATCGCTAAC+TGG | + | tig0009970:12950-12969 | Msa1347650:intergenic | 40.0% | |
| ! | TGAAGTGCAGTCTAAGACTA+AGG | - | tig0009970:13002-13021 | Msa1347650:intron | 40.0% |
| CCCTTGCAAAGAAATAAAGG+AGG | - | tig0009970:13064-13083 | Msa1347650:intron | 40.0% | |
| ! | CCCTCCTTTATTTCTTTGCA+AGG | + | tig0009970:13068-13087 | Msa1347650:intergenic | 40.0% |
| ACAATTCATGTGGGATTGCA+TGG | - | tig0009970:13258-13277 | Msa1347650:intron | 40.0% | |
| AAATAGTGTGCGTGTGTGTA+GGG | + | tig0009970:13342-13361 | Msa1347650:intergenic | 40.0% | |
| TACACACACGCACACTATTT+GGG | - | tig0009970:13342-13361 | Msa1347650:intron | 40.0% | |
| TTGTGTAGGAAATTCGTCCA+TGG | - | tig0009970:13386-13405 | Msa1347650:intron | 40.0% | |
| GGCGTACAAAATGCTTCTAA+AGG | - | tig0009970:13471-13490 | Msa1347650:intron | 40.0% | |
| ATCGAGGAGGAATAAAGGAT+GGG | + | tig0009970:13771-13790 | Msa1347650:intergenic | 40.0% | |
| AATCGAGGAGGAATAAAGGA+TGG | + | tig0009970:13772-13791 | Msa1347650:intergenic | 40.0% | |
| !! | TTCAGACGGGATGTTTTGTT+TGG | + | tig0009970:13863-13882 | Msa1347650:intergenic | 40.0% |
| CCATCAGTTATCGACAGAAA+TGG | + | tig0009970:14049-14068 | Msa1347650:intergenic | 40.0% | |
| CCATTTCTGTCGATAACTGA+TGG | - | tig0009970:14046-14065 | Msa1347650:intron | 40.0% | |
| CGAAATGTTCTTATGTGGCT+AGG | - | tig0009970:14283-14302 | Msa1347650:intron | 40.0% | |
| ! | CACTTTTGCTGCAACACAAT+TGG | + | tig0009970:14380-14399 | Msa1347650:intergenic | 40.0% |
| GTATTGCGGAGAATCATCTT+GGG | - | tig0009970:14755-14774 | Msa1347650:intron | 40.0% | |
| TATTGCGGAGAATCATCTTG+GGG | - | tig0009970:14756-14775 | Msa1347650:intron | 40.0% | |
| TTTGTCTGTAGGAATTCTGC+TGG | - | tig0009970:14802-14821 | Msa1347650:intron | 40.0% | |
| ! | ACTAGACCAGTAACGGAAAA+AGG | + | tig0009970:14883-14902 | Msa1347650:intergenic | 40.0% |
| CAGAGAAACTAGACCAGTAA+CGG | + | tig0009970:14890-14909 | Msa1347650:intergenic | 40.0% | |
| TTCTCTGCTATTGAGTGATC+CGG | - | tig0009970:14903-14922 | Msa1347650:intron | 40.0% | |
| AACAAGGCAGTATCTGCTAA+GGG | + | tig0009970:15036-15055 | Msa1347650:intergenic | 40.0% | |
| TAACAAGGCAGTATCTGCTA+AGG | + | tig0009970:15037-15056 | Msa1347650:intergenic | 40.0% | |
| !! | TTTGGATCCTCTGAAACATC+AGG | - | tig0009970:15133-15152 | Msa1347650:intron | 40.0% |
| ACACTAAGCCTAAGTTCCTA+TGG | + | tig0009970:15426-15445 | Msa1347650:intergenic | 40.0% | |
| CAGAGATATAGCCTAGGTAG+TGG | + | tig0009970:12417-12436 | Msa1347650:intergenic | 45.0% | |
| CACTACCTAGGCTATATCTC+TGG | - | tig0009970:12415-12434 | Msa1347650:CDS | 45.0% | |
| ! | GGCTATATCTCTGGTTGATG+TGG | - | tig0009970:12424-12443 | Msa1347650:CDS | 45.0% |
| TCAAAATACCCCTCATGCTG+AGG | - | tig0009970:12453-12472 | Msa1347650:CDS | 45.0% | |
| CAAAATACCCCTCATGCTGA+GGG | - | tig0009970:12454-12473 | Msa1347650:CDS | 45.0% | |
| ! | AGGGTTGGGCATTTGAAATG+TGG | - | tig0009970:12473-12492 | Msa1347650:CDS | 45.0% |
| ACGATCTAGATATCCAGTCC+TGG | + | tig0009970:12543-12562 | Msa1347650:intergenic | 45.0% | |
| GCCATTTGATCAAGATCGGA+TGG | - | tig0009970:12687-12706 | Msa1347650:intron | 45.0% | |
| ATCGTCCGATCTTGATCTGA+TGG | + | tig0009970:12774-12793 | Msa1347650:intergenic | 45.0% | |
| TGAACTTGACTGCGTGAATG+TGG | - | tig0009970:12800-12819 | Msa1347650:intron | 45.0% | |
| GAACTTGACTGCGTGAATGT+GGG | - | tig0009970:12801-12820 | Msa1347650:intron | 45.0% | |
| !! | ATAGACTTGTATGGTGGGTG+AGG | - | tig0009970:12890-12909 | Msa1347650:intron | 45.0% |
| GATCCTCGTGAGTTCTACTT+AGG | - | tig0009970:12920-12939 | Msa1347650:intron | 45.0% | |
| ACATGGCAATGCTAGATGAG+AGG | + | tig0009970:13160-13179 | Msa1347650:intergenic | 45.0% | |
| AATAGTGTGCGTGTGTGTAG+GGG | + | tig0009970:13341-13360 | Msa1347650:intergenic | 45.0% | |
| CAAATAGTGTGCGTGTGTGT+AGG | + | tig0009970:13343-13362 | Msa1347650:intergenic | 45.0% | |
| CTACACACACGCACACTATT+TGG | - | tig0009970:13341-13360 | Msa1347650:intron | 45.0% | |
| ACACACACGCACACTATTTG+GGG | - | tig0009970:13343-13362 | Msa1347650:intron | 45.0% | |
| TCGTCCATGGACACATATGA+TGG | - | tig0009970:13399-13418 | Msa1347650:intron | 45.0% | |
| TCCATGGACACATATGATGG+AGG | - | tig0009970:13402-13421 | Msa1347650:intron | 45.0% | |
| ACCTCCATCATATGTGTCCA+TGG | + | tig0009970:13406-13425 | Msa1347650:intergenic | 45.0% | |
| ATGGAGGTTCCACAACTACA+TGG | - | tig0009970:13418-13437 | Msa1347650:intron | 45.0% | |
| TGGAGGTTCCACAACTACAT+GGG | - | tig0009970:13419-13438 | Msa1347650:intron | 45.0% | |
| GTTCCACAACTACATGGGTT+CGG | - | tig0009970:13424-13443 | Msa1347650:intron | 45.0% | |
| GTAAAGAGGGAGGCAGAAAA+TGG | - | tig0009970:13936-13955 | Msa1347650:intron | 45.0% | |
| CTGTCGATAACTGATGGCTT+TGG | - | tig0009970:14052-14071 | Msa1347650:intron | 45.0% | |
| TTCTTATGTGGCTAGGGACT+AGG | - | tig0009970:14290-14309 | Msa1347650:intron | 45.0% | |
| TCTTATGTGGCTAGGGACTA+GGG | - | tig0009970:14291-14310 | Msa1347650:intron | 45.0% | |
| ACCATGCTTTGGCACAAGAT+AGG | - | tig0009970:14323-14342 | Msa1347650:intron | 45.0% | |
| ATTTCTATGGGCACACACTC+TGG | + | tig0009970:14355-14374 | Msa1347650:intergenic | 45.0% | |
| TTGTGCCCACAGTCACATTT+GGG | + | tig0009970:14589-14608 | Msa1347650:intergenic | 45.0% | |
| TTTGTGCCCACAGTCACATT+TGG | + | tig0009970:14590-14609 | Msa1347650:intergenic | 45.0% | |
| ATGTGACTGTGGGCACAAAT+AGG | - | tig0009970:14591-14610 | Msa1347650:intron | 45.0% | |
| TAAGGGAGAGAATGCTGATG+TGG | - | tig0009970:14669-14688 | Msa1347650:intron | 45.0% | |
| GGTATTGCGGAGAATCATCT+TGG | - | tig0009970:14754-14773 | Msa1347650:intron | 45.0% | |
| GCGAGTCTCTTAGATTCTGT+AGG | + | tig0009970:15099-15118 | Msa1347650:intergenic | 45.0% | |
| !! | GATCCTCTGAAACATCAGGA+GGG | - | tig0009970:15137-15156 | Msa1347650:intron | 45.0% |
| ATGTTCACGAGCAATGGAAG+CGG | + | tig0009970:15239-15258 | Msa1347650:intergenic | 45.0% | |
| ! | TCCAGATGAGGAGTACACTG+AGG | - | tig0009970:12100-12119 | Msa1347650:three_prime_UTR | 50.0% |
| ACCTCAGTGTACTCCTCATC+TGG | + | tig0009970:12104-12123 | Msa1347650:intergenic | 50.0% | |
| ! | AGATGAGGAGTACACTGAGG+TGG | - | tig0009970:12103-12122 | Msa1347650:three_prime_UTR | 50.0% |
| CTGAGGTGGAATCTCAACTG+CGG | - | tig0009970:12117-12136 | Msa1347650:three_prime_UTR | 50.0% | |
| TGAGGTGGAATCTCAACTGC+GGG | - | tig0009970:12118-12137 | Msa1347650:three_prime_UTR | 50.0% | |
| ATCTCAACTGCGGGCACATT+TGG | - | tig0009970:12127-12146 | Msa1347650:three_prime_UTR | 50.0% | |
| CTCAACACATCTCTGTGTCC+AGG | - | tig0009970:12522-12541 | Msa1347650:intron | 50.0% | |
| ACCAGCTGCCAATCGGTTAT+TGG | - | tig0009970:13447-13466 | Msa1347650:intron | 50.0% | |
| TCCAATAACCGATTGGCAGC+TGG | + | tig0009970:13451-13470 | Msa1347650:intergenic | 50.0% | |
| AGCTGCCAATCGGTTATTGG+AGG | - | tig0009970:13450-13469 | Msa1347650:intron | 50.0% | |
| GTACGCCTCCAATAACCGAT+TGG | + | tig0009970:13458-13477 | Msa1347650:intergenic | 50.0% | |
| ! | GGTTAGCCATGACCATGCTT+TGG | - | tig0009970:14312-14331 | Msa1347650:intron | 50.0% |
| CTTGTGCCAAAGCATGGTCA+TGG | + | tig0009970:14321-14340 | Msa1347650:intergenic | 50.0% | |
| GCCTATCTTGTGCCAAAGCA+TGG | + | tig0009970:14327-14346 | Msa1347650:intergenic | 50.0% | |
| TAGGACCCCAAATGTGACTG+TGG | - | tig0009970:14580-14599 | Msa1347650:intron | 50.0% | |
| AGGACCCCAAATGTGACTGT+GGG | - | tig0009970:14581-14600 | Msa1347650:intron | 50.0% | |
| TGTGCCCACAGTCACATTTG+GGG | + | tig0009970:14588-14607 | Msa1347650:intergenic | 50.0% | |
| ! | AATTCCCACATCGTGGGCTA+AGG | + | tig0009970:14626-14645 | Msa1347650:intergenic | 50.0% |
| AGAATGCTGATGTGGTCGAG+AGG | - | tig0009970:14677-14696 | Msa1347650:intron | 50.0% | |
| GAATGCTGATGTGGTCGAGA+GGG | - | tig0009970:14678-14697 | Msa1347650:intron | 50.0% | |
| AATGCTGATGTGGTCGAGAG+GGG | - | tig0009970:14679-14698 | Msa1347650:intron | 50.0% | |
| GGGAGAGTGAGATGGTATTG+CGG | - | tig0009970:14741-14760 | Msa1347650:intron | 50.0% | |
| !! | GGATCCTCTGAAACATCAGG+AGG | - | tig0009970:15136-15155 | Msa1347650:intron | 50.0% |
| GCTTCCATTGCTCGTGAACA+TGG | - | tig0009970:15238-15257 | Msa1347650:intron | 50.0% | |
| CTCTCCATGTTCACGAGCAA+TGG | + | tig0009970:15245-15264 | Msa1347650:intergenic | 50.0% | |
| ATACCCCTCATGCTGAGGGT+TGG | - | tig0009970:12458-12477 | Msa1347650:CDS | 55.0% | |
| TACCCCTCATGCTGAGGGTT+GGG | - | tig0009970:12459-12478 | Msa1347650:CDS | 55.0% | |
| ATGCCCAACCCTCAGCATGA+GGG | + | tig0009970:12465-12484 | Msa1347650:intergenic | 55.0% | |
| AATGCCCAACCCTCAGCATG+AGG | + | tig0009970:12466-12485 | Msa1347650:intergenic | 55.0% | |
| CACATCTCTGTGTCCAGGAC+TGG | - | tig0009970:12527-12546 | Msa1347650:intron | 55.0% | |
| TGCGTGTGTGTAGGGGTGAT+GGG | + | tig0009970:13334-13353 | Msa1347650:intergenic | 55.0% | |
| GGTCCGAACCCATGTAGTTG+TGG | + | tig0009970:13430-13449 | Msa1347650:intergenic | 55.0% | |
| TCTATGGGCACACACTCTGG+TGG | + | tig0009970:14352-14371 | Msa1347650:intergenic | 55.0% | |
| ! | CACATCGTGGGCTAAGGCTT+CGG | + | tig0009970:14620-14639 | Msa1347650:intergenic | 55.0% |
| GAAGCCTTAGCCCACGATGT+GGG | - | tig0009970:14619-14638 | Msa1347650:intron | 55.0% | |
| GAGACTCAGGGAGAGTGAGA+TGG | - | tig0009970:14733-14752 | Msa1347650:intron | 55.0% | |
| TGCCCAACCCTCAGCATGAG+GGG | + | tig0009970:12464-12483 | Msa1347650:intergenic | 60.0% | |
| !! | TGTGTAGGGGTGATGGGGGT+TGG | + | tig0009970:13328-13347 | Msa1347650:intergenic | 60.0% |
| ! | CGTGTGTGTAGGGGTGATGG+GGG | + | tig0009970:13332-13351 | Msa1347650:intergenic | 60.0% |
| GCGTGTGTGTAGGGGTGATG+GGG | + | tig0009970:13333-13352 | Msa1347650:intergenic | 60.0% | |
| GTGCGTGTGTGTAGGGGTGA+TGG | + | tig0009970:13335-13354 | Msa1347650:intergenic | 60.0% | |
| GGTTCGGACCAGCTGCCAAT+CGG | - | tig0009970:13440-13459 | Msa1347650:intron | 60.0% | |
| ATGGGCACACACTCTGGTGG+TGG | + | tig0009970:14349-14368 | Msa1347650:intergenic | 60.0% | |
| ! | ATCGTGGGCTAAGGCTTCGG+CGG | + | tig0009970:14617-14636 | Msa1347650:intergenic | 60.0% |
| CGAAGCCTTAGCCCACGATG+TGG | - | tig0009970:14618-14637 | Msa1347650:intron | 60.0% | |
| ! | TCGCACGCTGCGCTTGCTTT+TGG | - | tig0009970:15115-15134 | Msa1347650:intron | 60.0% |
| CGGCCCTCCTGATGTTTCAG+AGG | + | tig0009970:15143-15162 | Msa1347650:intergenic | 60.0% | |
| GCTGATGTGGTCGAGAGGGG+TGG | - | tig0009970:14682-14701 | Msa1347650:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0009970 | gene | 12089 | 15514 | 12089 | ID=Msa1347650;Name=Msa1347650 |
| tig0009970 | mRNA | 12089 | 15514 | 12089 | ID=Msa1347650-mRNA-1;Parent=Msa1347650;Name=Msa1347650-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|1|0.33|1|1|1|3|235|133 |
| tig0009970 | exon | 12089 | 12518 | 12089 | ID=Msa1347650-mRNA-1:exon:5984;Parent=Msa1347650-mRNA-1 |
| tig0009970 | exon | 14111 | 14209 | 14111 | ID=Msa1347650-mRNA-1:exon:5983;Parent=Msa1347650-mRNA-1 |
| tig0009970 | exon | 15407 | 15514 | 15407 | ID=Msa1347650-mRNA-1:exon:5982;Parent=Msa1347650-mRNA-1 |
| tig0009970 | CDS | 15407 | 15514 | 15407 | ID=Msa1347650-mRNA-1:cds;Parent=Msa1347650-mRNA-1 |
| tig0009970 | CDS | 14111 | 14209 | 14111 | ID=Msa1347650-mRNA-1:cds;Parent=Msa1347650-mRNA-1 |
| tig0009970 | CDS | 12324 | 12518 | 12324 | ID=Msa1347650-mRNA-1:cds;Parent=Msa1347650-mRNA-1 |
| tig0009970 | three_prime_UTR | 12089 | 12323 | 12089 | ID=Msa1347650-mRNA-1:three_prime_utr;Parent=Msa1347650-mRNA-1 |
| Gene Sequence |
| Protein sequence |
