Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0630120 | RHN58869.1 | 99.254 | 134 | 1 | 0 | 2 | 135 | 162 | 295 | 4.89e-93 | 281 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0630120 | sp|Q0WTP1|AUG7_ARATH | 83.459 | 133 | 21 | 1 | 2 | 133 | 197 | 329 | 2.73e-78 | 237 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0630120 | A0A396HZW9 | 99.254 | 134 | 1 | 0 | 2 | 135 | 162 | 295 | 2.34e-93 | 281 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001450 | Msa0630120 | 0.827655 | 1.387781e-54 | -8.615850e-47 |
| Msa0001940 | Msa0630120 | 0.804005 | 2.658343e-49 | -8.615850e-47 |
| Msa0017510 | Msa0630120 | 0.803523 | 3.348153e-49 | -8.615850e-47 |
| Msa0027230 | Msa0630120 | 0.805931 | 1.051786e-49 | -8.615850e-47 |
| Msa0028420 | Msa0630120 | 0.814715 | 1.337838e-51 | -8.615850e-47 |
| Msa0032920 | Msa0630120 | -0.809368 | 1.958911e-50 | -8.615850e-47 |
| Msa0032960 | Msa0630120 | -0.804606 | 1.992304e-49 | -8.615850e-47 |
| Msa0072370 | Msa0630120 | 0.803902 | 2.792498e-49 | -8.615850e-47 |
| Msa0075220 | Msa0630120 | 0.806096 | 9.709826e-50 | -8.615850e-47 |
| Msa0081520 | Msa0630120 | 0.802992 | 4.311007e-49 | -8.615850e-47 |
| Msa0090520 | Msa0630120 | 0.801930 | 7.136584e-49 | -8.615850e-47 |
| Msa0094120 | Msa0630120 | 0.815107 | 1.094936e-51 | -8.615850e-47 |
| Msa0615710 | Msa0630120 | 0.818526 | 1.872416e-52 | -8.615850e-47 |
| Msa0625720 | Msa0630120 | 0.809450 | 1.880747e-50 | -8.615850e-47 |
| Msa0630120 | Msa0638480 | 0.820752 | 5.810794e-53 | -8.615850e-47 |
| Msa0630120 | Msa0643890 | 0.802621 | 5.142726e-49 | -8.615850e-47 |
| Msa0630120 | Msa0663390 | 0.819571 | 1.083200e-52 | -8.615850e-47 |
| Msa0630120 | Msa0667050 | 0.800146 | 1.652800e-48 | -8.615850e-47 |
| Msa0630120 | Msa0669520 | 0.833616 | 4.815702e-56 | -8.615850e-47 |
| Msa0630120 | Msa0697160 | 0.824120 | 9.584866e-54 | -8.615850e-47 |
| Msa0630120 | Msa0707250 | 0.802011 | 6.869383e-49 | -8.615850e-47 |
| Msa0630120 | Msa0708520 | 0.806505 | 7.962635e-50 | -8.615850e-47 |
| Msa0630120 | Msa0709400 | 0.803421 | 3.514786e-49 | -8.615850e-47 |
| Msa0630120 | Msa0730430 | 0.808348 | 3.236273e-50 | -8.615850e-47 |
| Msa0630120 | Msa0738040 | 0.816773 | 4.652725e-52 | -8.615850e-47 |
| Msa0630120 | Msa0741840 | 0.805658 | 1.200539e-49 | -8.615850e-47 |
| Msa0630120 | Msa0749220 | 0.805712 | 1.169210e-49 | -8.615850e-47 |
| Msa0630120 | Msa0803890 | 0.803546 | 3.311115e-49 | -8.615850e-47 |
| Msa0630120 | Msa0861870 | 0.815235 | 1.025850e-51 | -8.615850e-47 |
| Msa0630120 | Msa0880140 | 0.800722 | 1.261073e-48 | -8.615850e-47 |
| Msa0630120 | Msa0902760 | 0.819600 | 1.066771e-52 | -8.615850e-47 |
| Msa0630120 | Msa0924470 | 0.820311 | 7.335380e-53 | -8.615850e-47 |
| Msa0630120 | Msa0963270 | 0.816412 | 5.604973e-52 | -8.615850e-47 |
| Msa0630120 | Msa0967870 | 0.815595 | 8.528806e-52 | -8.615850e-47 |
| Msa0630120 | Msa0968590 | 0.806938 | 6.450054e-50 | -8.615850e-47 |
| Msa0630120 | Msa1006840 | 0.815079 | 1.110866e-51 | -8.615850e-47 |
| Msa0630120 | Msa1013400 | 0.831280 | 1.825993e-55 | -8.615850e-47 |
| Msa0630120 | Msa1019430 | 0.800997 | 1.108506e-48 | -8.615850e-47 |
| Msa0630120 | Msa1019470 | 0.800971 | 1.122145e-48 | -8.615850e-47 |
| Msa0630120 | Msa1020510 | 0.801419 | 9.082946e-49 | -8.615850e-47 |
| Msa0630120 | Msa1040400 | 0.808909 | 2.456243e-50 | -8.615850e-47 |
| Msa0630120 | Msa1065390 | 0.802600 | 5.193838e-49 | -8.615850e-47 |
| Msa0630120 | Msa1066490 | 0.824915 | 6.231581e-54 | -8.615850e-47 |
| Msa0630120 | Msa1078170 | 0.848068 | 7.753637e-60 | -8.615850e-47 |
| Msa0630120 | Msa1079230 | 0.821464 | 3.981524e-53 | -8.615850e-47 |
| Msa0630120 | Msa1081150 | 0.800224 | 1.593511e-48 | -8.615850e-47 |
| Msa0630120 | Msa1093530 | 0.822807 | 1.944350e-53 | -8.615850e-47 |
| Msa0630120 | Msa1093840 | 0.831914 | 1.273800e-55 | -8.615850e-47 |
| Msa0630120 | Msa1100050 | 0.801912 | 7.197774e-49 | -8.615850e-47 |
| Msa0630120 | Msa1103990 | 0.807435 | 5.061118e-50 | -8.615850e-47 |
| Msa0630120 | Msa1106700 | 0.815079 | 1.110866e-51 | -8.615850e-47 |
| Msa0630120 | Msa1123380 | 0.809865 | 1.531763e-50 | -8.615850e-47 |
| Msa0630120 | Msa1124110 | 0.854928 | 8.874368e-62 | -8.615850e-47 |
| Msa0630120 | Msa1126510 | 0.804703 | 1.902260e-49 | -8.615850e-47 |
| Msa0630120 | Msa1140210 | 0.821544 | 3.815664e-53 | -8.615850e-47 |
| Msa0630120 | Msa1142020 | 0.809523 | 1.814113e-50 | -8.615850e-47 |
| Msa0630120 | Msa1147280 | 0.800692 | 1.279120e-48 | -8.615850e-47 |
| Msa0630120 | Msa1168160 | 0.800469 | 1.420208e-48 | -8.615850e-47 |
| Msa0630120 | Msa1168950 | 0.841047 | 6.021591e-58 | -8.615850e-47 |
| Msa0630120 | Msa1169040 | 0.822506 | 2.284535e-53 | -8.615850e-47 |
| Msa0630120 | Msa1183120 | 0.804372 | 2.230167e-49 | -8.615850e-47 |
| Msa0630120 | Msa1189070 | 0.822693 | 2.066465e-53 | -8.615850e-47 |
| Msa0630120 | Msa1203710 | 0.800128 | 1.666532e-48 | -8.615850e-47 |
| Msa0630120 | Msa1205280 | 0.807861 | 4.111094e-50 | -8.615850e-47 |
| Msa0630120 | Msa1209460 | 0.830072 | 3.606951e-55 | -8.615850e-47 |
| Msa0630120 | Msa1218600 | 0.818918 | 1.525623e-52 | -8.615850e-47 |
| Msa0630120 | Msa1221060 | 0.810956 | 8.908351e-51 | -8.615850e-47 |
| Msa0630120 | Msa1225700 | 0.804269 | 2.342744e-49 | -8.615850e-47 |
| Msa0630120 | Msa1244600 | 0.808534 | 2.953823e-50 | -8.615850e-47 |
| Msa0630120 | Msa1251160 | 0.829832 | 4.128192e-55 | -8.615850e-47 |
| Msa0630120 | Msa1271990 | 0.828525 | 8.566264e-55 | -8.615850e-47 |
| Msa0630120 | Msa1284550 | 0.815642 | 8.328151e-52 | -8.615850e-47 |
| Msa0630120 | Msa1303240 | 0.820837 | 5.555358e-53 | -8.615850e-47 |
| Msa0630120 | Msa1303250 | 0.805622 | 1.221080e-49 | -8.615850e-47 |
| Msa0630120 | Msa1347650 | 0.925286 | 2.254363e-90 | -8.615850e-47 |
| Msa0630120 | Msa1353980 | 0.808342 | 3.246341e-50 | -8.615850e-47 |
| Msa0630120 | Msa1360440 | 0.806239 | 9.059981e-50 | -8.615850e-47 |
| Msa0630120 | Msa1361410 | 0.810359 | 1.198978e-50 | -8.615850e-47 |
| Msa0630120 | Msa1373100 | 0.803060 | 4.175017e-49 | -8.615850e-47 |
| Msa0630120 | Msa1374060 | 0.800709 | 1.269332e-48 | -8.615850e-47 |
| Msa0630120 | Msa1375560 | 0.819380 | 1.197446e-52 | -8.615850e-47 |
| Msa0630120 | Msa1382560 | 0.809851 | 1.542671e-50 | -8.615850e-47 |
| Msa0630120 | Msa1422950 | 0.802906 | 4.490606e-49 | -8.615850e-47 |
| Msa0630120 | Msa1423350 | 0.806063 | 9.865315e-50 | -8.615850e-47 |
| Msa0630120 | Msa1440880 | 0.824275 | 8.816395e-54 | -8.615850e-47 |
| Msa0630120 | Msa1446810 | 0.825554 | 4.401118e-54 | -8.615850e-47 |
| Msa0630120 | Msa1446820 | 0.837834 | 4.113696e-57 | -8.615850e-47 |
| Msa0630120 | Msa1451160 | 0.846457 | 2.146361e-59 | -8.615850e-47 |
| Msa0630120 | Msa1464810 | 0.835952 | 1.243301e-56 | -8.615850e-47 |
| Msa0124060 | Msa0630120 | 0.808337 | 3.254496e-50 | -8.615850e-47 |
| Msa0124280 | Msa0630120 | 0.802122 | 6.517800e-49 | -8.615850e-47 |
| Msa0137990 | Msa0630120 | 0.804761 | 1.849288e-49 | -8.615850e-47 |
| Msa0140820 | Msa0630120 | 0.802722 | 4.901290e-49 | -8.615850e-47 |
| Msa0157290 | Msa0630120 | 0.803553 | 3.299786e-49 | -8.615850e-47 |
| Msa0168500 | Msa0630120 | 0.825483 | 4.574422e-54 | -8.615850e-47 |
| Msa0197420 | Msa0630120 | 0.806845 | 6.749755e-50 | -8.615850e-47 |
| Msa0211150 | Msa0630120 | 0.825978 | 3.489652e-54 | -8.615850e-47 |
| Msa0221000 | Msa0630120 | 0.811379 | 7.210138e-51 | -8.615850e-47 |
| Msa0222620 | Msa0630120 | 0.801129 | 1.041632e-48 | -8.615850e-47 |
| Msa0223080 | Msa0630120 | 0.835473 | 1.644469e-56 | -8.615850e-47 |
| Msa0225100 | Msa0630120 | 0.809566 | 1.776035e-50 | -8.615850e-47 |
| Msa0225740 | Msa0630120 | 0.817507 | 3.182459e-52 | -8.615850e-47 |
| Msa0378720 | Msa0630120 | 0.800232 | 1.587640e-48 | -8.615850e-47 |
| Msa0380300 | Msa0630120 | 0.801442 | 8.984966e-49 | -8.615850e-47 |
| Msa0395820 | Msa0630120 | 0.805441 | 1.332798e-49 | -8.615850e-47 |
| Msa0403970 | Msa0630120 | 0.800861 | 1.181403e-48 | -8.615850e-47 |
| Msa0405570 | Msa0630120 | 0.816936 | 4.277111e-52 | -8.615850e-47 |
| Msa0467490 | Msa0630120 | 0.811115 | 8.227357e-51 | -8.615850e-47 |
| Msa0468330 | Msa0630120 | 0.801323 | 9.507634e-49 | -8.615850e-47 |
| Msa0479170 | Msa0630120 | 0.838261 | 3.195113e-57 | -8.615850e-47 |
| Msa0481530 | Msa0630120 | 0.817293 | 3.555554e-52 | -8.615850e-47 |
| Msa0266180 | Msa0630120 | 0.807884 | 4.064495e-50 | -8.615850e-47 |
| Msa0270320 | Msa0630120 | 0.816213 | 6.208721e-52 | -8.615850e-47 |
| Msa0287740 | Msa0630120 | 0.817847 | 2.666338e-52 | -8.615850e-47 |
| Msa0292400 | Msa0630120 | 0.803384 | 3.576362e-49 | -8.615850e-47 |
| Msa0300270 | Msa0630120 | 0.824894 | 6.302966e-54 | -8.615850e-47 |
| Msa0300320 | Msa0630120 | 0.815589 | 8.554957e-52 | -8.615850e-47 |
| Msa0302160 | Msa0630120 | 0.839368 | 1.652240e-57 | -8.615850e-47 |
| Msa0316810 | Msa0630120 | 0.806545 | 7.807641e-50 | -8.615850e-47 |
| Msa0326480 | Msa0630120 | 0.810096 | 1.365746e-50 | -8.615850e-47 |
| Msa0337700 | Msa0630120 | 0.827558 | 1.464350e-54 | -8.615850e-47 |
| Msa0338210 | Msa0630120 | 0.804465 | 2.131887e-49 | -8.615850e-47 |
| Msa0339490 | Msa0630120 | 0.838398 | 2.944603e-57 | -8.615850e-47 |
| Msa0339500 | Msa0630120 | 0.840712 | 7.369877e-58 | -8.615850e-47 |
| Msa0342310 | Msa0630120 | 0.802313 | 5.952796e-49 | -8.615850e-47 |
| Msa0524500 | Msa0630120 | 0.805554 | 1.261997e-49 | -8.615850e-47 |
| Msa0526420 | Msa0630120 | 0.821924 | 3.116316e-53 | -8.615850e-47 |
| Msa0529890 | Msa0630120 | 0.809092 | 2.244120e-50 | -8.615850e-47 |
| Msa0547720 | Msa0630120 | 0.801808 | 7.561035e-49 | -8.615850e-47 |
| Msa0556060 | Msa0630120 | 0.802035 | 6.790640e-49 | -8.615850e-47 |
| Msa0569200 | Msa0630120 | 0.806437 | 8.228192e-50 | -8.615850e-47 |
| Msa0572840 | Msa0630120 | 0.818875 | 1.559938e-52 | -8.615850e-47 |
| Msa0585560 | Msa0630120 | 0.809448 | 1.882508e-50 | -8.615850e-47 |
| Msa0588360 | Msa0630120 | 0.809457 | 1.874306e-50 | -8.615850e-47 |
| Msa0597790 | Msa0630120 | 0.808145 | 3.575293e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0630120 | MtrunA17_Chr4g0007061 | 99.254 | 134 | 1 | 0 | 2 | 135 | 162 | 295 | 4.50e-97 | 281 |
| Msa0630120 | MtrunA17_Chr6g0469531 | 99.254 | 134 | 1 | 0 | 2 | 135 | 197 | 330 | 1.62e-96 | 280 |
| Msa0630120 | MtrunA17_Chr5g0419991 | 99.254 | 134 | 1 | 0 | 2 | 135 | 192 | 325 | 2.03e-96 | 280 |
| Msa0630120 | MtrunA17_Chr2g0316451 | 86.517 | 89 | 12 | 0 | 46 | 134 | 1 | 89 | 3.71e-51 | 157 |
| Msa0630120 | MtrunA17_Chr2g0316471 | 83.784 | 37 | 6 | 0 | 2 | 38 | 264 | 300 | 8.46e-16 | 72.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0630120 | AT5G17620.1 | 83.459 | 133 | 21 | 1 | 2 | 133 | 197 | 329 | 2.78e-79 | 237 |
Find 39 sgRNAs with CRISPR-Local
Find 265 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAATGTTCTAGCTGTTTCT+AGG | 0.248603 | 4_3:-11714857 | None:intergenic |
| TCGCACGCTGCGCTTGCTTT+TGG | 0.265845 | 4_3:+11717820 | Msa0630120:CDS |
| ATCTCAACTGCGGGCACATT+TGG | 0.284011 | 4_3:+11714827 | Msa0630120:CDS |
| ACCAGCTGCCAATCGGTTAT+TGG | 0.321126 | 4_3:+11716151 | Msa0630120:CDS |
| ATACAAAAGAATAAGACTTC+AGG | 0.364826 | 4_3:-11718009 | None:intergenic |
| ACCTCAGTGTACTCCTCATC+TGG | 0.381852 | 4_3:-11714801 | None:intergenic |
| ACAGTCATAAATCGAGATCT+TGG | 0.417585 | 4_3:+11717910 | Msa0630120:CDS |
| CTCTCCATGTTCACGAGCAA+TGG | 0.449246 | 4_3:-11717947 | None:intergenic |
| TTTGGATCCTCTGAAACATC+AGG | 0.459453 | 4_3:+11717838 | Msa0630120:CDS |
| TACAAAAGAATAAGACTTCA+GGG | 0.466718 | 4_3:-11718008 | None:intergenic |
| TGCATTATCCATAGGAACTT+AGG | 0.468253 | 4_3:+11718120 | Msa0630120:three_prime_UTR |
| TCCAATAACCGATTGGCAGC+TGG | 0.475902 | 4_3:-11716152 | None:intergenic |
| ACACTAAGCCTAAGTTCCTA+TGG | 0.477818 | 4_3:-11718128 | None:intergenic |
| GCTTCCATTGCTCGTGAACA+TGG | 0.492879 | 4_3:+11717943 | Msa0630120:CDS |
| GGTTCGGACCAGCTGCCAAT+CGG | 0.534989 | 4_3:+11716144 | Msa0630120:CDS |
| GGCGTACAAAATGCTTCTAA+AGG | 0.537057 | 4_3:+11716175 | Msa0630120:CDS |
| GTTCCACAACTACATGGGTT+CGG | 0.537879 | 4_3:+11716128 | Msa0630120:CDS |
| ATGGAGGTTCCACAACTACA+TGG | 0.544282 | 4_3:+11716122 | Msa0630120:CDS |
| TCGTCCATGGACACATATGA+TGG | 0.548384 | 4_3:+11716103 | Msa0630120:CDS |
| TGAGGTGGAATCTCAACTGC+GGG | 0.561771 | 4_3:+11714818 | Msa0630120:CDS |
| ACCTCCATCATATGTGTCCA+TGG | 0.562139 | 4_3:-11716107 | None:intergenic |
| TGAATAGCTGCATTATCCAT+AGG | 0.575883 | 4_3:+11718112 | Msa0630120:three_prime_UTR |
| GCGAGTCTCTTAGATTCTGT+AGG | 0.577290 | 4_3:-11717801 | None:intergenic |
| ATTATTCTTGAGACAGAAGA+CGG | 0.584759 | 4_3:-11717865 | None:intergenic |
| GTACGCCTCCAATAACCGAT+TGG | 0.588633 | 4_3:-11716159 | None:intergenic |
| CGGCCCTCCTGATGTTTCAG+AGG | 0.590799 | 4_3:-11717845 | None:intergenic |
| ATGTTCACGAGCAATGGAAG+CGG | 0.593084 | 4_3:-11717941 | None:intergenic |
| TTGTGTAGGAAATTCGTCCA+TGG | 0.601904 | 4_3:+11716090 | Msa0630120:intron |
| AGCTGCCAATCGGTTATTGG+AGG | 0.604664 | 4_3:+11716154 | Msa0630120:CDS |
| ATTCAACATGATTTACACCA+AGG | 0.609705 | 4_3:+11714875 | Msa0630120:CDS |
| GGTCCGAACCCATGTAGTTG+TGG | 0.617719 | 4_3:-11716131 | None:intergenic |
| AGATGAGGAGTACACTGAGG+TGG | 0.635027 | 4_3:+11714803 | Msa0630120:CDS |
| GGATCCTCTGAAACATCAGG+AGG | 0.638889 | 4_3:+11717841 | Msa0630120:CDS |
| GCATGCTTATAATCCAGATG+AGG | 0.661424 | 4_3:+11714788 | Msa0630120:intron |
| TGGAGGTTCCACAACTACAT+GGG | 0.663707 | 4_3:+11716123 | Msa0630120:CDS |
| TCCATGGACACATATGATGG+AGG | 0.684377 | 4_3:+11716106 | Msa0630120:CDS |
| GATCCTCTGAAACATCAGGA+GGG | 0.696492 | 4_3:+11717842 | Msa0630120:CDS |
| CTGAGGTGGAATCTCAACTG+CGG | 0.711659 | 4_3:+11714817 | Msa0630120:CDS |
| TCCAGATGAGGAGTACACTG+AGG | 0.761993 | 4_3:+11714800 | Msa0630120:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTTTTTTAACAATTAG+AGG | - | chr4_3:11714681-11714700 | None:intergenic | 10.0% |
| !!! | TTTTGCAAATTATTAAATAC+AGG | + | chr4_3:11714574-11714593 | Msa0630120:intron | 15.0% |
| !!! | ACTAAATCTTTATTTGAATA+GGG | - | chr4_3:11714957-11714976 | None:intergenic | 15.0% |
| !!! | GTTTATATTTTCAAATAATG+AGG | - | chr4_3:11715428-11715447 | None:intergenic | 15.0% |
| !! | ACATATTTACTATATTAACA+AGG | - | chr4_3:11717757-11717776 | None:intergenic | 15.0% |
| !! | CAAAAATCAGATTAAGATTT+GGG | - | chr4_3:11714153-11714172 | None:intergenic | 20.0% |
| !! | ACAAAAATCAGATTAAGATT+TGG | - | chr4_3:11714154-11714173 | None:intergenic | 20.0% |
| !! | AAGTTCTTAAAGATATCATA+CGG | - | chr4_3:11714187-11714206 | None:intergenic | 20.0% |
| !! | TCAAAATATATAAACCTTTC+TGG | + | chr4_3:11714241-11714260 | Msa0630120:intron | 20.0% |
| !! | CATAATACTTACTAAATAGT+AGG | - | chr4_3:11714357-11714376 | None:intergenic | 20.0% |
| !! | CTACTATTTAGTAAGTATTA+TGG | + | chr4_3:11714355-11714374 | Msa0630120:intron | 20.0% |
| !! | TTGTAGTAAATATTACTCAT+TGG | + | chr4_3:11714439-11714458 | Msa0630120:intron | 20.0% |
| !!! | TGCTAATAGAATTGTTTTTA+TGG | + | chr4_3:11714498-11714517 | Msa0630120:intron | 20.0% |
| !!! | CACTAAATCTTTATTTGAAT+AGG | - | chr4_3:11714958-11714977 | None:intergenic | 20.0% |
| !! | TATAAGTGAATAAACAACTA+TGG | + | chr4_3:11714981-11715000 | Msa0630120:intron | 20.0% |
| !! | TTAATTGTGATGAAATAAGA+AGG | + | chr4_3:11715197-11715216 | Msa0630120:intron | 20.0% |
| !! | TAAACTTCATATTAGAATTC+TGG | + | chr4_3:11715313-11715332 | Msa0630120:intron | 20.0% |
| !! | TCAAATAATGAGGTTAAATT+TGG | - | chr4_3:11715418-11715437 | None:intergenic | 20.0% |
| !! | TAGCTAAGTTAAAACAAATT+TGG | - | chr4_3:11715829-11715848 | None:intergenic | 20.0% |
| !! | AATAATTTAGACACTATCAT+AGG | - | chr4_3:11716240-11716259 | None:intergenic | 20.0% |
| !! | AGAAATATTATCCACAAATA+TGG | + | chr4_3:11716325-11716344 | Msa0630120:intron | 20.0% |
| !! | TATTCAAATAAAATCATGCA+TGG | - | chr4_3:11716380-11716399 | None:intergenic | 20.0% |
| !! | ATCAACTAAAATTTCAAGAT+GGG | - | chr4_3:11716675-11716694 | None:intergenic | 20.0% |
| !! | AATCAACTAAAATTTCAAGA+TGG | - | chr4_3:11716676-11716695 | None:intergenic | 20.0% |
| !! | TTGTATTGAACATGAAAATA+TGG | + | chr4_3:11716825-11716844 | Msa0630120:intron | 20.0% |
| !! | TATCTGTTTAATCATTATCA+TGG | + | chr4_3:11716909-11716928 | Msa0630120:intron | 20.0% |
| !! | ATCTGTTTAATCATTATCAT+GGG | + | chr4_3:11716910-11716929 | Msa0630120:intron | 20.0% |
| !! | ATGATATCTTTAAGAACTTC+TGG | + | chr4_3:11714188-11714207 | Msa0630120:intron | 25.0% |
| !! | GTAAACACCACATAAATTTT+TGG | + | chr4_3:11714263-11714282 | Msa0630120:intron | 25.0% |
| !! | ATTGTGTACTACATTTTTCT+AGG | - | chr4_3:11714412-11714431 | None:intergenic | 25.0% |
| ! | ATACAGGAAACAAATTGAAA+AGG | + | chr4_3:11714590-11714609 | Msa0630120:intron | 25.0% |
| !!! | ATGTTGCACTGATTTTAATA+TGG | + | chr4_3:11714743-11714762 | Msa0630120:intron | 25.0% |
| ! | GTTGATTGAATCAGATAATA+GGG | - | chr4_3:11714935-11714954 | None:intergenic | 25.0% |
| !! | GTTTATCCTAAATCTGTTTT+AGG | - | chr4_3:11715298-11715317 | None:intergenic | 25.0% |
| ! | GTGTTAAAATATTGAATGCA+GGG | - | chr4_3:11715348-11715367 | None:intergenic | 25.0% |
| ! | TGTGTTAAAATATTGAATGC+AGG | - | chr4_3:11715349-11715368 | None:intergenic | 25.0% |
| !! | TGAATCCAATATCTAGAATT+CGG | + | chr4_3:11715544-11715563 | Msa0630120:intron | 25.0% |
| ! | ATAAAAGGAATCTCAACAAA+AGG | + | chr4_3:11715737-11715756 | Msa0630120:intron | 25.0% |
| ! | CTTCAATAGTGAATTATACA+TGG | - | chr4_3:11715881-11715900 | None:intergenic | 25.0% |
| ! | CATGTATAATTCACTATTGA+AGG | + | chr4_3:11715879-11715898 | Msa0630120:intron | 25.0% |
| ! | TTCAATCTTTACAATTCATG+TGG | + | chr4_3:11715952-11715971 | Msa0630120:intron | 25.0% |
| ! | TCAATCTTTACAATTCATGT+GGG | + | chr4_3:11715953-11715972 | Msa0630120:intron | 25.0% |
| ! | ATAAAAGATAGTTGTTGTGT+AGG | + | chr4_3:11716076-11716095 | Msa0630120:intron | 25.0% |
| !!! | AAAATATTTTTGCGAAGCAT+GGG | - | chr4_3:11716209-11716228 | None:intergenic | 25.0% |
| !!! | AAAAATATTTTTGCGAAGCA+TGG | - | chr4_3:11716210-11716229 | None:intergenic | 25.0% |
| !!! | GATTAGCTTGAAGTAATAAA+AGG | - | chr4_3:11716355-11716374 | None:intergenic | 25.0% |
| ! | GATTAGATACTATAAAATCG+AGG | - | chr4_3:11716492-11716511 | None:intergenic | 25.0% |
| !!! | AACTAGTTTGATTTTGTTGA+TGG | + | chr4_3:11716704-11716723 | Msa0630120:intron | 25.0% |
| ! | TACTTTGTACCAATAAATGT+CGG | + | chr4_3:11716788-11716807 | Msa0630120:intron | 25.0% |
| ! | GAGAAACTTTATTGTCAATT+CGG | + | chr4_3:11716877-11716896 | Msa0630120:intron | 25.0% |
| !! | ATTTTCGAAATGTTCTTATG+TGG | + | chr4_3:11716983-11717002 | Msa0630120:intron | 25.0% |
| ! | AGTAAACAATGACAATACTT+TGG | + | chr4_3:11717111-11717130 | Msa0630120:intron | 25.0% |
| ! | GTAAACAATGACAATACTTT+GGG | + | chr4_3:11717112-11717131 | Msa0630120:intron | 25.0% |
| !! | TGATGTAGTAGATAACTTTT+TGG | + | chr4_3:11717219-11717238 | Msa0630120:intron | 25.0% |
| !! | TGGATCTATGTGAAATTTTA+TGG | + | chr4_3:11717239-11717258 | Msa0630120:intron | 25.0% |
| ! | TAGGAAAAATAAGATGAGAA+AGG | + | chr4_3:11717356-11717375 | Msa0630120:intron | 25.0% |
| ! | AGGAAAAATAAGATGAGAAA+GGG | + | chr4_3:11717357-11717376 | Msa0630120:intron | 25.0% |
| ! | TAAGATATTCATCCTTATGT+AGG | + | chr4_3:11717534-11717553 | Msa0630120:intron | 25.0% |
| ! | AAATAAAAGCAACCTACATA+AGG | - | chr4_3:11717549-11717568 | None:intergenic | 25.0% |
| ! | TTAGTGTACCAAATTGTAAA+CGG | + | chr4_3:11717671-11717690 | Msa0630120:intron | 25.0% |
| ! | TACAAAAGAATAAGACTTCA+GGG | - | chr4_3:11718011-11718030 | None:intergenic | 25.0% |
| ! | ATACAAAAGAATAAGACTTC+AGG | - | chr4_3:11718012-11718031 | None:intergenic | 25.0% |
| ! | TTAAAAATCACAGTTTAAGC+TGG | + | chr4_3:11718182-11718201 | Msa0630120:three_prime_UTR | 25.0% |
| TGTTTGTAAAAGGAGAAAAG+CGG | + | chr4_3:11713876-11713895 | Msa0630120:intron | 30.0% | |
| GTATAAAGCAAAGCTCAAAT+TGG | + | chr4_3:11713898-11713917 | Msa0630120:intron | 30.0% | |
| ATTAAGATTTGGGTAAACCT+TGG | - | chr4_3:11714143-11714162 | None:intergenic | 30.0% | |
| AGGGAAACCAAAAATTTATG+TGG | - | chr4_3:11714273-11714292 | None:intergenic | 30.0% | |
| TAAGTATTATGGCGTAGATT+AGG | + | chr4_3:11714366-11714385 | Msa0630120:intron | 30.0% | |
| GGTTATTACTAGTTAGACAT+TGG | + | chr4_3:11714519-11714538 | Msa0630120:intron | 30.0% | |
| ATTACTAGTTAGACATTGGT+TGG | + | chr4_3:11714523-11714542 | Msa0630120:intron | 30.0% | |
| ATTCAACATGATTTACACCA+AGG | + | chr4_3:11714875-11714894 | Msa0630120:CDS | 30.0% | |
| TAACACATTAGAGCAAAGTA+TGG | - | chr4_3:11714906-11714925 | None:intergenic | 30.0% | |
| GGTTGATTGAATCAGATAAT+AGG | - | chr4_3:11714936-11714955 | None:intergenic | 30.0% | |
| ACAGTCATCAACATACATAT+AGG | - | chr4_3:11715081-11715100 | None:intergenic | 30.0% | |
| !!! | TAGGTAGTGGTTTTAATGTT+TGG | - | chr4_3:11715104-11715123 | None:intergenic | 30.0% |
| AAACATTAAAACCACTACCT+AGG | + | chr4_3:11715103-11715122 | Msa0630120:intron | 30.0% | |
| ATCTAGATCGTAGAAAAAAG+CGG | + | chr4_3:11715254-11715273 | Msa0630120:intron | 30.0% | |
| ! | TTTTGGCCTAAAACAGATTT+AGG | + | chr4_3:11715289-11715308 | Msa0630120:intron | 30.0% |
| ! | TTTTAACACATCAACACAGT+CGG | + | chr4_3:11715359-11715378 | Msa0630120:intron | 30.0% |
| ! | GAATCCAATATCTAGAATTC+GGG | + | chr4_3:11715545-11715564 | Msa0630120:intron | 30.0% |
| TCAAGATATCTTACACACTT+AGG | + | chr4_3:11715673-11715692 | Msa0630120:intron | 30.0% | |
| ACTAAGGCTGATGAAATAAA+AGG | + | chr4_3:11715722-11715741 | Msa0630120:intron | 30.0% | |
| AAACCCTTGCAAAGAAATAA+AGG | + | chr4_3:11715765-11715784 | Msa0630120:intron | 30.0% | |
| TTCTGCAATAAACTTCTGAT+AGG | - | chr4_3:11716309-11716328 | None:intergenic | 30.0% | |
| TAAAAGGTTCTCCATATTTG+TGG | - | chr4_3:11716339-11716358 | None:intergenic | 30.0% | |
| ATAAAATCGAGGAGGAATAA+AGG | - | chr4_3:11716481-11716500 | None:intergenic | 30.0% | |
| TAGATACTATAAAATCGAGG+AGG | - | chr4_3:11716489-11716508 | None:intergenic | 30.0% | |
| GAGATAGTCTACAAGAAAAT+AGG | - | chr4_3:11716528-11716547 | None:intergenic | 30.0% | |
| ATGCAAAAAGGATTGTAAAG+AGG | + | chr4_3:11716627-11716646 | Msa0630120:intron | 30.0% | |
| TGCAAAAAGGATTGTAAAGA+GGG | + | chr4_3:11716628-11716647 | Msa0630120:intron | 30.0% | |
| ATGAAAATATGGCGATCAAA+TGG | + | chr4_3:11716836-11716855 | Msa0630120:intron | 30.0% | |
| AAACTTTATTGTCAATTCGG+CGG | + | chr4_3:11716880-11716899 | Msa0630120:intron | 30.0% | |
| TACACTCGATGAATTGATAA+TGG | - | chr4_3:11716951-11716970 | None:intergenic | 30.0% | |
| !! | ACACAATTGGCTATTTCTAT+GGG | - | chr4_3:11717072-11717091 | None:intergenic | 30.0% |
| !! | AACACAATTGGCTATTTCTA+TGG | - | chr4_3:11717073-11717092 | None:intergenic | 30.0% |
| ATTCTAGTATATTGAGACTC+AGG | + | chr4_3:11717425-11717444 | Msa0630120:intron | 30.0% | |
| TTCTAGTATATTGAGACTCA+GGG | + | chr4_3:11717426-11717445 | Msa0630120:intron | 30.0% | |
| !!! | AGAGAGTATTTTTTGTCTGT+AGG | + | chr4_3:11717496-11717515 | Msa0630120:intron | 30.0% |
| CTAAGAATCCGTTTACAATT+TGG | - | chr4_3:11717682-11717701 | None:intergenic | 30.0% | |
| ! | TTTGTCTGCAACAGTTTTTA+GGG | + | chr4_3:11717776-11717795 | Msa0630120:intron | 30.0% |
| ATTATTCTTGAGACAGAAGA+CGG | - | chr4_3:11717868-11717887 | None:intergenic | 30.0% | |
| TCAACAAAAAGTTGACGACT+TGG | + | chr4_3:11714114-11714133 | Msa0630120:intron | 35.0% | |
| TTATGTGGTGTTTACCAGAA+AGG | - | chr4_3:11714258-11714277 | None:intergenic | 35.0% | |
| ATAGTAAATGCCTGACTACT+AGG | - | chr4_3:11714329-11714348 | None:intergenic | 35.0% | |
| TAGTCAGGCATTTACTATTG+AGG | + | chr4_3:11714331-11714350 | Msa0630120:intron | 35.0% | |
| ! | TAGTTAGACATTGGTTGGAT+TGG | + | chr4_3:11714528-11714547 | Msa0630120:intron | 35.0% |
| ATACACGATGTTGAGAAACA+TGG | - | chr4_3:11714653-11714672 | None:intergenic | 35.0% | |
| !! | TGAATGTTCTAGCTGTTTCT+AGG | - | chr4_3:11714860-11714879 | None:intergenic | 35.0% |
| AGTAGCCATTTGATCAAGAT+CGG | + | chr4_3:11715387-11715406 | Msa0630120:intron | 35.0% | |
| TCCTACAAGATAGACTTGTA+TGG | + | chr4_3:11715585-11715604 | Msa0630120:intron | 35.0% | |
| ACCATACAAGTCTATCTTGT+AGG | - | chr4_3:11715589-11715608 | None:intergenic | 35.0% | |
| TACAAGATAGACTTGTATGG+TGG | + | chr4_3:11715588-11715607 | Msa0630120:intron | 35.0% | |
| ACAAGATAGACTTGTATGGT+GGG | + | chr4_3:11715589-11715608 | Msa0630120:intron | 35.0% | |
| ! | CCTCCTTTATTTCTTTGCAA+GGG | - | chr4_3:11715771-11715790 | None:intergenic | 35.0% |
| CCTTGCAAAGAAATAAAGGA+GGG | + | chr4_3:11715769-11715788 | Msa0630120:intron | 35.0% | |
| !! | TTCAGACAGGATGTTTTGTT+TGG | - | chr4_3:11716568-11716587 | None:intergenic | 35.0% |
| AGACACTTAAACATTCAGAC+AGG | - | chr4_3:11716581-11716600 | None:intergenic | 35.0% | |
| AAACACATGCAGATGCAAAA+AGG | + | chr4_3:11716615-11716634 | Msa0630120:intron | 35.0% | |
| AAAAAGGATTGTAAAGAGGG+AGG | + | chr4_3:11716631-11716650 | Msa0630120:intron | 35.0% | |
| TTTGTACCAATAAATGTCGG+AGG | + | chr4_3:11716791-11716810 | Msa0630120:intron | 35.0% | |
| AGAAATCCTCCGACATTTAT+TGG | - | chr4_3:11716800-11716819 | None:intergenic | 35.0% | |
| AACTTTATTGTCAATTCGGC+GGG | + | chr4_3:11716881-11716900 | Msa0630120:intron | 35.0% | |
| GAAATGTTCTTATGTGGCTA+GGG | + | chr4_3:11716989-11717008 | Msa0630120:intron | 35.0% | |
| ATGACAATACTTTGGGTGTT+TGG | + | chr4_3:11717119-11717138 | Msa0630120:intron | 35.0% | |
| TGACAATACTTTGGGTGTTT+GGG | + | chr4_3:11717120-11717139 | Msa0630120:intron | 35.0% | |
| TGACACACTTTGAATCTGTT+AGG | + | chr4_3:11717266-11717285 | Msa0630120:intron | 35.0% | |
| AACATAAATTCCCACATCGT+GGG | - | chr4_3:11717337-11717356 | None:intergenic | 35.0% | |
| TAACATAAATTCCCACATCG+TGG | - | chr4_3:11717338-11717357 | None:intergenic | 35.0% | |
| ACGATGTGGGAATTTATGTT+AGG | + | chr4_3:11717337-11717356 | Msa0630120:intron | 35.0% | |
| AATCATCTTGGGGATAATTC+TGG | + | chr4_3:11717471-11717490 | Msa0630120:intron | 35.0% | |
| ATCATCTTGGGGATAATTCT+GGG | + | chr4_3:11717472-11717491 | Msa0630120:intron | 35.0% | |
| ! | TATACTCCTTTTTCCGTTAC+TGG | + | chr4_3:11717579-11717598 | Msa0630120:intron | 35.0% |
| AATCAGATTATGATGCGAAC+CGG | - | chr4_3:11717630-11717649 | None:intergenic | 35.0% | |
| ! | GTTTGTCTGCAACAGTTTTT+AGG | + | chr4_3:11717775-11717794 | Msa0630120:intron | 35.0% |
| ACAGTCATAAATCGAGATCT+TGG | + | chr4_3:11717910-11717929 | Msa0630120:CDS | 35.0% | |
| TGAATAGCTGCATTATCCAT+AGG | + | chr4_3:11718112-11718131 | Msa0630120:three_prime_UTR | 35.0% | |
| TGCATTATCCATAGGAACTT+AGG | + | chr4_3:11718120-11718139 | Msa0630120:three_prime_UTR | 35.0% | |
| GGAACAAGATGAATTTGCAC+TGG | - | chr4_3:11714308-11714327 | None:intergenic | 40.0% | |
| TCATCTTGTTCCTAGTAGTC+AGG | + | chr4_3:11714316-11714335 | Msa0630120:intron | 40.0% | |
| GCATGCTTATAATCCAGATG+AGG | + | chr4_3:11714788-11714807 | Msa0630120:intron | 40.0% | |
| AGCAAAGTATGGTCAAACCT+TGG | - | chr4_3:11714895-11714914 | None:intergenic | 40.0% | |
| ATCAACCAGAGATATAGCCT+AGG | - | chr4_3:11715123-11715142 | None:intergenic | 40.0% | |
| ! | GCTATATCTCTGGTTGATGT+GGG | + | chr4_3:11715125-11715144 | Msa0630120:intron | 40.0% |
| TAGATCGTAGAAAAAAGCGG+TGG | + | chr4_3:11715257-11715276 | Msa0630120:intron | 40.0% | |
| ! | AGCGGTGGAAAAAGAGATTT+TGG | + | chr4_3:11715272-11715291 | Msa0630120:intron | 40.0% |
| ACCATCCGATCTTGATCAAA+TGG | - | chr4_3:11715395-11715414 | None:intergenic | 40.0% | |
| GTGAACCATCAGATCAAGAT+CGG | + | chr4_3:11715470-11715489 | Msa0630120:intron | 40.0% | |
| ATTCACGCAGTCAAGTTCAT+TGG | - | chr4_3:11715503-11715522 | None:intergenic | 40.0% | |
| GATATTGGATTCACAGCAGT+TGG | - | chr4_3:11715537-11715556 | None:intergenic | 40.0% | |
| GAAGCCCGAATTCTAGATAT+TGG | - | chr4_3:11715552-11715571 | None:intergenic | 40.0% | |
| TTTCCTAAGTAGAACTCACG+AGG | - | chr4_3:11715630-11715649 | None:intergenic | 40.0% | |
| AGAATTCTCACATCGCTAAC+TGG | - | chr4_3:11715654-11715673 | None:intergenic | 40.0% | |
| ! | TGAAGTGCAGTCTAAGACTA+AGG | + | chr4_3:11715706-11715725 | Msa0630120:intron | 40.0% |
| CCCTTGCAAAGAAATAAAGG+AGG | + | chr4_3:11715768-11715787 | Msa0630120:intron | 40.0% | |
| ! | CCCTCCTTTATTTCTTTGCA+AGG | - | chr4_3:11715772-11715791 | None:intergenic | 40.0% |
| ACAATTCATGTGGGATTGCA+TGG | + | chr4_3:11715962-11715981 | Msa0630120:intron | 40.0% | |
| AAATAGTGTGCGTGTGTGTA+GGG | - | chr4_3:11716046-11716065 | None:intergenic | 40.0% | |
| TACACACACGCACACTATTT+GGG | + | chr4_3:11716046-11716065 | Msa0630120:intron | 40.0% | |
| TTGTGTAGGAAATTCGTCCA+TGG | + | chr4_3:11716090-11716109 | Msa0630120:intron | 40.0% | |
| GGCGTACAAAATGCTTCTAA+AGG | + | chr4_3:11716175-11716194 | Msa0630120:CDS | 40.0% | |
| ATCGAGGAGGAATAAAGGAT+GGG | - | chr4_3:11716476-11716495 | None:intergenic | 40.0% | |
| AATCGAGGAGGAATAAAGGA+TGG | - | chr4_3:11716477-11716496 | None:intergenic | 40.0% | |
| CCATCAGTTATCGACAGAAA+TGG | - | chr4_3:11716754-11716773 | None:intergenic | 40.0% | |
| CCATTTCTGTCGATAACTGA+TGG | + | chr4_3:11716751-11716770 | Msa0630120:intron | 40.0% | |
| CGAAATGTTCTTATGTGGCT+AGG | + | chr4_3:11716988-11717007 | Msa0630120:intron | 40.0% | |
| ! | CACTTTTGCTGCAACACAAT+TGG | - | chr4_3:11717085-11717104 | None:intergenic | 40.0% |
| GTATTGCGGAGAATCATCTT+GGG | + | chr4_3:11717460-11717479 | Msa0630120:intron | 40.0% | |
| TATTGCGGAGAATCATCTTG+GGG | + | chr4_3:11717461-11717480 | Msa0630120:intron | 40.0% | |
| TTTGTCTGTAGGAATTCTGC+TGG | + | chr4_3:11717507-11717526 | Msa0630120:intron | 40.0% | |
| ! | ACTAGACCAGTAACGGAAAA+AGG | - | chr4_3:11717588-11717607 | None:intergenic | 40.0% |
| CAGAGAAACTAGACCAGTAA+CGG | - | chr4_3:11717595-11717614 | None:intergenic | 40.0% | |
| TTCTCTGCTATTGAGTGATC+CGG | + | chr4_3:11717608-11717627 | Msa0630120:intron | 40.0% | |
| AACAAGGCAGTATCTGCTAA+AGG | - | chr4_3:11717741-11717760 | None:intergenic | 40.0% | |
| !! | TTTGGATCCTCTGAAACATC+AGG | + | chr4_3:11717838-11717857 | Msa0630120:CDS | 40.0% |
| ACACTAAGCCTAAGTTCCTA+TGG | - | chr4_3:11718131-11718150 | None:intergenic | 40.0% | |
| GCACTGGATTGACAAACAGA+GGG | - | chr4_3:11714292-11714311 | None:intergenic | 45.0% | |
| TGCACTGGATTGACAAACAG+AGG | - | chr4_3:11714293-11714312 | None:intergenic | 45.0% | |
| !! | TGGTTTGCTAAGTCAGCAGT+TGG | + | chr4_3:11714548-11714567 | Msa0630120:intron | 45.0% |
| CAGAGATATAGCCTAGGTAG+TGG | - | chr4_3:11715117-11715136 | None:intergenic | 45.0% | |
| CACTACCTAGGCTATATCTC+TGG | + | chr4_3:11715115-11715134 | Msa0630120:intron | 45.0% | |
| ! | GGCTATATCTCTGGTTGATG+TGG | + | chr4_3:11715124-11715143 | Msa0630120:intron | 45.0% |
| TCAAAATACCCCTCATGCTG+AGG | + | chr4_3:11715153-11715172 | Msa0630120:intron | 45.0% | |
| CAAAATACCCCTCATGCTGA+GGG | + | chr4_3:11715154-11715173 | Msa0630120:intron | 45.0% | |
| ! | AGGGTTGGGCATTTGAAATG+TGG | + | chr4_3:11715173-11715192 | Msa0630120:intron | 45.0% |
| CAACACATCTCTTTGTGTCC+AGG | + | chr4_3:11715224-11715243 | Msa0630120:intron | 45.0% | |
| ACGATCTAGATATCCAGTCC+TGG | - | chr4_3:11715245-11715264 | None:intergenic | 45.0% | |
| GCCATTTGATCAAGATCGGA+TGG | + | chr4_3:11715391-11715410 | Msa0630120:intron | 45.0% | |
| ATCGTCCGATCTTGATCTGA+TGG | - | chr4_3:11715478-11715497 | None:intergenic | 45.0% | |
| TGAACTTGACTGCGTGAATG+TGG | + | chr4_3:11715504-11715523 | Msa0630120:intron | 45.0% | |
| GAACTTGACTGCGTGAATGT+GGG | + | chr4_3:11715505-11715524 | Msa0630120:intron | 45.0% | |
| !! | ATAGACTTGTATGGTGGGTG+AGG | + | chr4_3:11715594-11715613 | Msa0630120:intron | 45.0% |
| GATCCTCGTGAGTTCTACTT+AGG | + | chr4_3:11715624-11715643 | Msa0630120:intron | 45.0% | |
| ACATGGCAATGCTAGATGAG+AGG | - | chr4_3:11715864-11715883 | None:intergenic | 45.0% | |
| AATAGTGTGCGTGTGTGTAG+GGG | - | chr4_3:11716045-11716064 | None:intergenic | 45.0% | |
| CAAATAGTGTGCGTGTGTGT+AGG | - | chr4_3:11716047-11716066 | None:intergenic | 45.0% | |
| CTACACACACGCACACTATT+TGG | + | chr4_3:11716045-11716064 | Msa0630120:intron | 45.0% | |
| ACACACACGCACACTATTTG+GGG | + | chr4_3:11716047-11716066 | Msa0630120:intron | 45.0% | |
| TCGTCCATGGACACATATGA+TGG | + | chr4_3:11716103-11716122 | Msa0630120:CDS | 45.0% | |
| TCCATGGACACATATGATGG+AGG | + | chr4_3:11716106-11716125 | Msa0630120:CDS | 45.0% | |
| ACCTCCATCATATGTGTCCA+TGG | - | chr4_3:11716110-11716129 | None:intergenic | 45.0% | |
| ATGGAGGTTCCACAACTACA+TGG | + | chr4_3:11716122-11716141 | Msa0630120:CDS | 45.0% | |
| TGGAGGTTCCACAACTACAT+GGG | + | chr4_3:11716123-11716142 | Msa0630120:CDS | 45.0% | |
| GTTCCACAACTACATGGGTT+CGG | + | chr4_3:11716128-11716147 | Msa0630120:CDS | 45.0% | |
| GTAAAGAGGGAGGCAGAAAA+TGG | + | chr4_3:11716641-11716660 | Msa0630120:intron | 45.0% | |
| CTGTCGATAACTGATGGCTT+TGG | + | chr4_3:11716757-11716776 | Msa0630120:intron | 45.0% | |
| TTCTTATGTGGCTAGGGACT+AGG | + | chr4_3:11716995-11717014 | Msa0630120:intron | 45.0% | |
| TCTTATGTGGCTAGGGACTA+GGG | + | chr4_3:11716996-11717015 | Msa0630120:intron | 45.0% | |
| ACCATGCTTTGGCACAAGAT+AGG | + | chr4_3:11717028-11717047 | Msa0630120:intron | 45.0% | |
| ATTTCTATGGGCACACACTC+TGG | - | chr4_3:11717060-11717079 | None:intergenic | 45.0% | |
| TTGTGCCCACAGTCACATTT+GGG | - | chr4_3:11717294-11717313 | None:intergenic | 45.0% | |
| TTTGTGCCCACAGTCACATT+TGG | - | chr4_3:11717295-11717314 | None:intergenic | 45.0% | |
| ATGTGACTGTGGGCACAAAT+AGG | + | chr4_3:11717296-11717315 | Msa0630120:intron | 45.0% | |
| AAAGGGAGAGAATGCTGATG+TGG | + | chr4_3:11717374-11717393 | Msa0630120:intron | 45.0% | |
| GGTATTGCGGAGAATCATCT+TGG | + | chr4_3:11717459-11717478 | Msa0630120:intron | 45.0% | |
| GCGAGTCTCTTAGATTCTGT+AGG | - | chr4_3:11717804-11717823 | None:intergenic | 45.0% | |
| !! | GATCCTCTGAAACATCAGGA+GGG | + | chr4_3:11717842-11717861 | Msa0630120:CDS | 45.0% |
| ATGTTCACGAGCAATGGAAG+CGG | - | chr4_3:11717944-11717963 | None:intergenic | 45.0% | |
| ! | AGTTGACGACTTGGCTTCCA+AGG | + | chr4_3:11714123-11714142 | Msa0630120:intron | 50.0% |
| ! | TCCAGATGAGGAGTACACTG+AGG | + | chr4_3:11714800-11714819 | Msa0630120:CDS | 50.0% |
| ACCTCAGTGTACTCCTCATC+TGG | - | chr4_3:11714804-11714823 | None:intergenic | 50.0% | |
| ! | AGATGAGGAGTACACTGAGG+TGG | + | chr4_3:11714803-11714822 | Msa0630120:CDS | 50.0% |
| CTGAGGTGGAATCTCAACTG+CGG | + | chr4_3:11714817-11714836 | Msa0630120:CDS | 50.0% | |
| TGAGGTGGAATCTCAACTGC+GGG | + | chr4_3:11714818-11714837 | Msa0630120:CDS | 50.0% | |
| ATCTCAACTGCGGGCACATT+TGG | + | chr4_3:11714827-11714846 | Msa0630120:CDS | 50.0% | |
| CATCTCTTTGTGTCCAGGAC+TGG | + | chr4_3:11715229-11715248 | Msa0630120:intron | 50.0% | |
| ACCAGCTGCCAATCGGTTAT+TGG | + | chr4_3:11716151-11716170 | Msa0630120:CDS | 50.0% | |
| TCCAATAACCGATTGGCAGC+TGG | - | chr4_3:11716155-11716174 | None:intergenic | 50.0% | |
| AGCTGCCAATCGGTTATTGG+AGG | + | chr4_3:11716154-11716173 | Msa0630120:CDS | 50.0% | |
| GTACGCCTCCAATAACCGAT+TGG | - | chr4_3:11716162-11716181 | None:intergenic | 50.0% | |
| ! | GGTTAGCCATGACCATGCTT+TGG | + | chr4_3:11717017-11717036 | Msa0630120:intron | 50.0% |
| CTTGTGCCAAAGCATGGTCA+TGG | - | chr4_3:11717026-11717045 | None:intergenic | 50.0% | |
| GCCTATCTTGTGCCAAAGCA+TGG | - | chr4_3:11717032-11717051 | None:intergenic | 50.0% | |
| TAGGACCCCAAATGTGACTG+TGG | + | chr4_3:11717285-11717304 | Msa0630120:intron | 50.0% | |
| AGGACCCCAAATGTGACTGT+GGG | + | chr4_3:11717286-11717305 | Msa0630120:intron | 50.0% | |
| TGTGCCCACAGTCACATTTG+GGG | - | chr4_3:11717293-11717312 | None:intergenic | 50.0% | |
| ! | AATTCCCACATCGTGGGCTA+AGG | - | chr4_3:11717331-11717350 | None:intergenic | 50.0% |
| AGAATGCTGATGTGGTCGAG+AGG | + | chr4_3:11717382-11717401 | Msa0630120:intron | 50.0% | |
| GAATGCTGATGTGGTCGAGA+GGG | + | chr4_3:11717383-11717402 | Msa0630120:intron | 50.0% | |
| AATGCTGATGTGGTCGAGAG+GGG | + | chr4_3:11717384-11717403 | Msa0630120:intron | 50.0% | |
| GGGAGAGTGAGATGGTATTG+CGG | + | chr4_3:11717446-11717465 | Msa0630120:intron | 50.0% | |
| !! | GGATCCTCTGAAACATCAGG+AGG | + | chr4_3:11717841-11717860 | Msa0630120:CDS | 50.0% |
| GCTTCCATTGCTCGTGAACA+TGG | + | chr4_3:11717943-11717962 | Msa0630120:CDS | 50.0% | |
| CTCTCCATGTTCACGAGCAA+TGG | - | chr4_3:11717950-11717969 | None:intergenic | 50.0% | |
| ATACCCCTCATGCTGAGGGT+TGG | + | chr4_3:11715158-11715177 | Msa0630120:intron | 55.0% | |
| TACCCCTCATGCTGAGGGTT+GGG | + | chr4_3:11715159-11715178 | Msa0630120:intron | 55.0% | |
| ATGCCCAACCCTCAGCATGA+GGG | - | chr4_3:11715165-11715184 | None:intergenic | 55.0% | |
| AATGCCCAACCCTCAGCATG+AGG | - | chr4_3:11715166-11715185 | None:intergenic | 55.0% | |
| TGCGTGTGTGTAGGGGTGAT+GGG | - | chr4_3:11716038-11716057 | None:intergenic | 55.0% | |
| GGTCCGAACCCATGTAGTTG+TGG | - | chr4_3:11716134-11716153 | None:intergenic | 55.0% | |
| TCTATGGGCACACACTCTGG+TGG | - | chr4_3:11717057-11717076 | None:intergenic | 55.0% | |
| ! | CACATCGTGGGCTAAGGCTT+CGG | - | chr4_3:11717325-11717344 | None:intergenic | 55.0% |
| GAAGCCTTAGCCCACGATGT+GGG | + | chr4_3:11717324-11717343 | Msa0630120:intron | 55.0% | |
| GAGACTCAGGGAGAGTGAGA+TGG | + | chr4_3:11717438-11717457 | Msa0630120:intron | 55.0% | |
| TGCCCAACCCTCAGCATGAG+GGG | - | chr4_3:11715164-11715183 | None:intergenic | 60.0% | |
| !! | TGTGTAGGGGTGATGGGGGT+TGG | - | chr4_3:11716032-11716051 | None:intergenic | 60.0% |
| ! | CGTGTGTGTAGGGGTGATGG+GGG | - | chr4_3:11716036-11716055 | None:intergenic | 60.0% |
| GCGTGTGTGTAGGGGTGATG+GGG | - | chr4_3:11716037-11716056 | None:intergenic | 60.0% | |
| GTGCGTGTGTGTAGGGGTGA+TGG | - | chr4_3:11716039-11716058 | None:intergenic | 60.0% | |
| GGTTCGGACCAGCTGCCAAT+CGG | + | chr4_3:11716144-11716163 | Msa0630120:CDS | 60.0% | |
| ATGGGCACACACTCTGGTGG+TGG | - | chr4_3:11717054-11717073 | None:intergenic | 60.0% | |
| ! | ATCGTGGGCTAAGGCTTCGG+CGG | - | chr4_3:11717322-11717341 | None:intergenic | 60.0% |
| CGAAGCCTTAGCCCACGATG+TGG | + | chr4_3:11717323-11717342 | Msa0630120:intron | 60.0% | |
| ! | TCGCACGCTGCGCTTGCTTT+TGG | + | chr4_3:11717820-11717839 | Msa0630120:CDS | 60.0% |
| CGGCCCTCCTGATGTTTCAG+AGG | - | chr4_3:11717848-11717867 | None:intergenic | 60.0% | |
| GCTGATGTGGTCGAGAGGGG+TGG | + | chr4_3:11717387-11717406 | Msa0630120:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 11713871 | 11718219 | 11713871 | ID=Msa0630120;Name=Msa0630120 |
| chr4_3 | mRNA | 11713871 | 11718219 | 11713871 | ID=Msa0630120-mRNA-1;Parent=Msa0630120;Name=Msa0630120-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|0.66|0.25|0.75|0.66|1|4|235|135 |
| chr4_3 | exon | 11713871 | 11713876 | 11713871 | ID=Msa0630120-mRNA-1:exon:3511;Parent=Msa0630120-mRNA-1 |
| chr4_3 | exon | 11714789 | 11714896 | 11714789 | ID=Msa0630120-mRNA-1:exon:3512;Parent=Msa0630120-mRNA-1 |
| chr4_3 | exon | 11716098 | 11716196 | 11716098 | ID=Msa0630120-mRNA-1:exon:3513;Parent=Msa0630120-mRNA-1 |
| chr4_3 | exon | 11717790 | 11718219 | 11717790 | ID=Msa0630120-mRNA-1:exon:3514;Parent=Msa0630120-mRNA-1 |
| chr4_3 | CDS | 11713871 | 11713876 | 11713871 | ID=Msa0630120-mRNA-1:cds;Parent=Msa0630120-mRNA-1 |
| chr4_3 | CDS | 11714789 | 11714896 | 11714789 | ID=Msa0630120-mRNA-1:cds;Parent=Msa0630120-mRNA-1 |
| chr4_3 | CDS | 11716098 | 11716196 | 11716098 | ID=Msa0630120-mRNA-1:cds;Parent=Msa0630120-mRNA-1 |
| chr4_3 | CDS | 11717790 | 11717984 | 11717790 | ID=Msa0630120-mRNA-1:cds;Parent=Msa0630120-mRNA-1 |
| chr4_3 | three_prime_UTR | 11717985 | 11718219 | 11717985 | ID=Msa0630120-mRNA-1:three_prime_utr;Parent=Msa0630120-mRNA-1 |
| Gene Sequence |
| Protein sequence |
