AlfalfaGEDB | Msa0697160

M. sativa cultivar zhongmu-4 / Msa0697160

KEGG: -
GO: -
PFAM: PF14705.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0697160	XP_003608396.1	98.824	85	1	0	1	85	1	85	3.46e-54	172

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0697160	sp\|Q6AVK1\|COSA_ORYSJ	81.176	85	16	0	1	85	1	85	4.42e-45	142

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0697160	G7JV45	98.824	85	1	0	1	85	1	85	1.65e-54	172

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000050	Msa0697160	0.816726	4.766819e-52	-8.615850e-47
Msa0001940	Msa0697160	0.817051	4.029838e-52	-8.615850e-47
Msa0005890	Msa0697160	0.845303	4.417871e-59	-8.615850e-47
Msa0017950	Msa0697160	0.804884	1.743218e-49	-8.615850e-47
Msa0018000	Msa0697160	0.825394	4.800798e-54	-8.615850e-47
Msa0018160	Msa0697160	0.806620	7.528328e-50	-8.615850e-47
Msa0022550	Msa0697160	0.804387	2.213514e-49	-8.615850e-47
Msa0024550	Msa0697160	0.827008	1.983476e-54	-8.615850e-47
Msa0027820	Msa0697160	0.819136	1.360801e-52	-8.615850e-47
Msa0028420	Msa0697160	0.824986	5.995917e-54	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0697160	MtrunA17_Chr4g0049791	98.824	85	1	0	1	85	1	85	3.18e-58	172
Msa0697160	MtrunA17_Chr2g0279651	85.882	85	12	0	1	85	1	85	7.55e-51	154

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0697160	AT4G33640.1	80.769	78	15	0	1	78	1	78	1.13e-41	132
Msa0697160	AT4G33640.2	80.769	78	15	0	1	78	67	144	3.49e-41	132

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Find 31 sgRNAs with CRISPR-Local

Find 126 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGAGGAGGTTGAAAAGCTG+AGG	0.496528	4_4:+67147498	Msa0697160:CDS
AATATATTTGAAGCACTCGT+CGG	0.601303	4_4:+67148264	Msa0697160:CDS
AGAGGAGGTTGAAAAGCTGA+GGG	0.572997	4_4:+67147499	Msa0697160:CDS
AGCTGAGGGAAGAAATCAAG+AGG	0.626324	4_4:+67147513	Msa0697160:CDS
AGGGAAGAAATCAAGAGGCT+TGG	0.527446	4_4:+67147518	Msa0697160:CDS
AGTTGATGCTTAAATTTCAA+TGG	0.407398	4_4:-67148676	None:intergenic
ATAGTATAGGATAAACATGA+AGG	0.579841	4_4:-67148631	None:intergenic
CACTTCGTAAATAATAGTAT+AGG	0.525059	4_4:-67148644	None:intergenic
CAGTTAGCAGCAGCAGGAGC+AGG	0.504867	4_4:-67148381	None:intergenic
CATTTGATTCACAAACTAAA+TGG	0.258730	4_4:-67148549	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTCTTGCAAGGTATAACAAA+AGG	+	chr4_4:67147559-67147578	Msa0697160:intron	30.0%
GATGTTGTAATATATGCATG+TGG	+	chr4_4:67148489-67148508	Msa0697160:three_prime_UTR	30.0%
TTCTTGCAAGGTATAACAAA+AGG	+	chr4_4:67147559-67147578	Msa0697160:intron	30.0%
GATGTTGTAATATATGCATG+TGG	+	chr4_4:67148489-67148508	Msa0697160:three_prime_UTR	30.0%
TCTTATGGATCTAGATCACA+AGG	+	chr4_4:67147722-67147741	Msa0697160:intron	35.0%
CTGAAGATATAGTGAGTGAT+TGG	+	chr4_4:67148131-67148150	Msa0697160:intron	35.0%
GAGTGATTTCCACATTATCA+TGG	-	chr4_4:67148356-67148375	None:intergenic	35.0%
GTTAGTGATTCAAGCAGTAA+AGG	-	chr4_4:67148434-67148453	None:intergenic	35.0%
TGTAATATATGCATGTGGAG+AGG	+	chr4_4:67148494-67148513	Msa0697160:three_prime_UTR	35.0%
TCTTATGGATCTAGATCACA+AGG	+	chr4_4:67147722-67147741	Msa0697160:intron	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_4	gene	67147365	67148759	67147365	ID=Msa0697160;Name=Msa0697160
chr4_4	mRNA	67147365	67148759	67147365	ID=Msa0697160-mRNA-1;Parent=Msa0697160;Name=Msa0697160-mRNA-1;_AED=0.00;_eAED=0.00;_QI=123\|1\|1\|1\|1\|1\|2\|355\|86
chr4_4	exon	67147365	67147568	67147365	ID=Msa0697160-mRNA-1:exon:19602;Parent=Msa0697160-mRNA-1
chr4_4	exon	67148225	67148759	67148225	ID=Msa0697160-mRNA-1:exon:19603;Parent=Msa0697160-mRNA-1
chr4_4	five_prime_UTR	67147365	67147487	67147365	ID=Msa0697160-mRNA-1:five_prime_utr;Parent=Msa0697160-mRNA-1
chr4_4	CDS	67147488	67147568	67147488	ID=Msa0697160-mRNA-1:cds;Parent=Msa0697160-mRNA-1
chr4_4	CDS	67148225	67148404	67148225	ID=Msa0697160-mRNA-1:cds;Parent=Msa0697160-mRNA-1
chr4_4	three_prime_UTR	67148405	67148759	67148405	ID=Msa0697160-mRNA-1:three_prime_utr;Parent=Msa0697160-mRNA-1

Gene Sequence	>Msa0697160 ATGAACGTAGAAGAGGAGGTTGAAAAGCTGAGGGAAGAAATCAAGAGGCTTGGAAATGTTCAAGCAGATGGTTCTTGCAAGGTCACATTTGGAACACTCTTTCACGATGATCGGTGCGCAAATATATTTGAAGCACTCGTCGGTACGCTAAGAGCTGCTAAAAAGCGTAAAGTAGTTGCATACGACGGTGAACTACTGTTGCAAGGAGTCCATGATAATGTGGAAATCACTCTTAATCCTGCTCCTGCTGCTGCTAACTGA
Protein sequence	>Msa0697160 MNVEEEVEKLREEIKRLGNVQADGSCKVTFGTLFHDDRCANIFEALVGTLRAAKKRKVVAYDGELLLQGVHDNVEITLNPAPAAAN*