AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1175750


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1175750 MtrunA17_Chr8g0345871 98.907 366 3 1 1 366 1 365 0.0 739
Msa1175750 MtrunA17_Chr3g0132471 48.936 235 103 4 142 359 75 309 4.34e-70 222
Msa1175750 MtrunA17_Chr7g0273081 51.852 216 93 3 157 362 92 306 3.03e-68 217
Msa1175750 MtrunA17_Chr0c01g0489461 54.795 219 81 5 162 363 176 393 1.71e-66 215
Msa1175750 MtrunA17_Chr1g0191571 51.980 202 84 3 174 362 129 330 4.28e-63 204
Msa1175750 MtrunA17_Chr8g0366551 50.739 203 86 3 171 362 114 313 8.75e-62 201
Msa1175750 MtrunA17_Chr5g0426851 46.789 218 95 4 157 358 76 288 3.60e-60 196
Msa1175750 MtrunA17_Chr2g0287761 44.920 187 95 3 181 360 1 186 1.55e-42 147
Msa1175750 MtrunA17_Chr1g0158941 35.242 227 116 3 162 359 68 292 2.23e-36 133
Msa1175750 MtrunA17_Chr3g0126381 33.333 198 79 6 213 359 4 199 1.92e-20 88.2
Msa1175750 MtrunA17_Chr1g0185621 27.419 186 126 4 183 361 476 659 1.88e-13 71.6
Msa1175750 MtrunA17_Chr3g0126361 55.932 59 22 1 158 212 74 132 3.55e-13 66.6
Msa1175750 MtrunA17_Chr4g0002781 26.389 216 140 8 157 359 139 348 1.16e-11 65.5
Msa1175750 MtrunA17_Chr5g0400621 29.333 150 100 3 183 332 158 301 3.48e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1175750 AT3G61950.1 43.152 387 158 10 1 359 1 353 9.93e-83 256
Msa1175750 AT2G46810.1 43.750 384 141 12 15 359 22 369 1.31e-80 251
Msa1175750 AT2G46810.3 43.358 399 144 14 1 359 1 357 2.42e-80 250
Msa1175750 AT3G61950.3 42.779 367 148 10 1 339 1 333 2.61e-74 234
Msa1175750 AT2G46810.2 43.844 333 127 9 51 359 1 297 2.82e-73 230
Msa1175750 AT4G01460.1 44.144 333 131 6 40 364 20 305 5.29e-70 222
Msa1175750 AT4G01460.2 44.144 333 131 6 40 364 20 305 5.29e-70 222
Msa1175750 AT3G61950.2 42.643 333 136 7 51 359 1 302 4.61e-69 219
Msa1175750 AT2G46810.4 40.443 361 127 10 51 359 1 325 2.38e-67 216
Msa1175750 AT3G24140.2 51.802 222 87 3 161 363 177 397 9.34e-63 206
Msa1175750 AT3G24140.1 51.802 222 87 3 161 363 177 397 1.44e-62 206
Msa1175750 AT3G61950.6 42.173 313 126 7 51 339 1 282 1.33e-60 197
Msa1175750 AT1G22490.1 51.980 202 81 4 171 362 105 300 6.40e-60 196
Msa1175750 AT1G72210.1 50.500 200 90 3 171 362 115 313 1.13e-58 193
Msa1175750 AT1G22490.2 52.514 179 69 4 171 339 105 277 3.17e-52 176
Msa1175750 AT1G72210.2 50.282 177 79 3 171 339 115 290 3.35e-51 173
Msa1175750 AT5G46690.1 45.946 222 90 5 171 362 78 299 9.78e-47 162
Msa1175750 AT3G06120.1 43.575 179 87 2 181 345 1 179 6.38e-40 140
Msa1175750 AT5G65320.1 41.451 193 104 3 175 358 96 288 7.23e-39 140
Msa1175750 AT3G61950.4 40.260 231 97 5 1 212 1 209 7.98e-38 135
Msa1175750 AT3G61950.5 40.260 231 97 5 1 212 1 209 7.98e-38 135
Msa1175750 AT5G46690.2 45.226 199 79 5 171 339 78 276 2.18e-37 136
Msa1175750 AT5G65320.2 41.618 173 93 2 175 339 96 268 1.83e-32 123
Msa1175750 AT5G53210.2 63.889 72 25 1 172 243 94 164 2.13e-24 102
Msa1175750 AT5G53210.1 63.889 72 25 1 172 243 94 164 2.48e-24 102
Msa1175750 AT5G53210.1 40.000 90 53 1 270 359 275 363 1.04e-11 65.9
Msa1175750 AT3G26744.6 30.769 169 97 5 183 339 308 468 4.49e-13 70.5
Msa1175750 AT1G12860.2 32.121 165 96 6 183 339 268 424 5.24e-13 70.1
Msa1175750 AT3G26744.1 31.250 176 98 6 183 346 308 472 5.52e-13 70.5
Msa1175750 AT3G26744.4 31.250 176 98 6 183 346 308 472 5.52e-13 70.5
Msa1175750 AT3G26744.2 31.250 176 98 6 183 346 308 472 5.52e-13 70.5
Msa1175750 AT1G12860.1 32.919 161 92 6 183 335 268 420 7.98e-13 69.7
Msa1175750 AT2G16910.1 28.934 197 103 8 183 356 315 497 4.88e-11 64.7

Find 104 sgRNAs with CRISPR-Local

Find 188 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTTCACTCTGTTTATTAAT+TGG 0.164311 8_1:-7278130 Msa1175750:three_prime_UTR
AAAGGTGGAAACTTCTTAAA+TGG 0.167879 8_1:+7281576 None:intergenic
TCTTATTCCGCTTCTTCTTA+TGG 0.206056 8_1:-7281333 Msa1175750:five_prime_UTR
CGTGTTGCTTATTAATTTCT+TGG 0.210146 8_1:-7278075 Msa1175750:three_prime_UTR
ACTTGTTGTGAATCCATTCT+AGG 0.226170 8_1:+7280520 None:intergenic
TGTAAGGTCCCAAGCATTAT+TGG 0.260136 8_1:+7281698 None:intergenic
CTTTCATGAATTGAGAAATT+AGG 0.271280 8_1:-7278050 Msa1175750:three_prime_UTR
ACATCTTCCTTATTCTTAAC+TGG 0.278715 8_1:+7280277 None:intergenic
AACAAGACCAGTTAAGAATA+AGG 0.304290 8_1:-7280284 Msa1175750:CDS
TTGTTGCTTTGGAAAATCTT+AGG 0.306717 8_1:-7279463 Msa1175750:CDS
CTTTGAAGCATTTGAAGAAA+TGG 0.310096 8_1:+7280643 None:intergenic
GATAAAGGTTATTGTTGCTT+TGG 0.325174 8_1:-7279474 Msa1175750:CDS
TCGACTGCGATTGATATATA+TGG 0.325316 8_1:-7278019 Msa1175750:three_prime_UTR
TGTTGTTCCTTGTTGAGATT+TGG 0.330133 8_1:+7280330 None:intergenic
TGAGATGTATCATGTTAATT+AGG 0.334165 8_1:-7278206 Msa1175750:three_prime_UTR
GATATATGTAGACAAGAAAT+TGG 0.340117 8_1:+7278233 None:intergenic
GGTGACCAAGCATCAATAAT+TGG 0.351169 8_1:-7279752 Msa1175750:CDS
TAAAGTGTGGCTGGGGTGAC+GGG 0.356668 8_1:-7278268 Msa1175750:three_prime_UTR
ACTCAAAAGATGTGATGTTT+AGG 0.363568 8_1:+7279426 None:intergenic
GTAAAGTGTGGCTGGGGTGA+CGG 0.367312 8_1:-7278269 Msa1175750:three_prime_UTR
ATGACCACCTTAGTGTTCTT+AGG 0.380570 8_1:-7280198 Msa1175750:CDS
CACTAAGGTGGTCATTCATT+TGG 0.381725 8_1:+7280206 None:intergenic
GTAGCTCACAAAATAGAGAT+AGG 0.382254 8_1:-7278184 Msa1175750:three_prime_UTR
TTTGTTCATCAAGTAATGTT+TGG 0.386937 8_1:+7280722 None:intergenic
AGCTATAAGCCTAAAACCTT+GGG 0.391798 8_1:-7278346 Msa1175750:three_prime_UTR
GGATGGTGGTAAAGTGTGGC+TGG 0.403422 8_1:-7278277 Msa1175750:three_prime_UTR
CTCCTCCAATTATTGATGCT+TGG 0.405749 8_1:+7279747 None:intergenic
AAGGTGGAAACTTCTTAAAT+GGG 0.406058 8_1:+7281577 None:intergenic
AAAGGCTGGTCAATTGATAA+AGG 0.417902 8_1:-7279489 Msa1175750:CDS
CATAGCTTACATTCCTAGAA+TGG 0.419943 8_1:-7280533 Msa1175750:CDS
GGGTTGTTGCAGAAGAATAA+AGG 0.421184 8_1:-7278317 Msa1175750:three_prime_UTR
AATACATACACAAGAATTGA+TGG 0.427991 8_1:+7281170 None:intergenic
GCTGGGGTGACGGGGAACAT+AGG 0.430744 8_1:-7278259 Msa1175750:three_prime_UTR
TTGATCATGGAGAGGCTTCA+AGG 0.435947 8_1:-7281195 Msa1175750:exon
GAGACTTAAGAGTTGTTTGT+TGG 0.450047 8_1:-7281457 Msa1175750:five_prime_UTR
ATATTCAGCTACATCAATAA+TGG 0.454301 8_1:-7278386 Msa1175750:CDS
TAGCTATAAGCCTAAAACCT+TGG 0.457228 8_1:-7278347 Msa1175750:three_prime_UTR
TCATCATCACCACCTAGTTA+TGG 0.465171 8_1:-7279629 Msa1175750:CDS
CATATACACCACTTTGATCA+TGG 0.467083 8_1:-7281208 Msa1175750:exon
TTATTAATTGGAATGTTAGT+TGG 0.476712 8_1:-7278118 Msa1175750:three_prime_UTR
GAAGGGTTGTCTGATTTGTA+AGG 0.479576 8_1:+7281682 None:intergenic
GAATAATACCTTGAGATTGA+AGG 0.480462 8_1:+7279388 None:intergenic
ATATTGCTGTTGAACGCAAT+AGG 0.480469 8_1:-7280234 Msa1175750:CDS
CACACCCCGCCAATAATGCT+TGG 0.481463 8_1:-7281707 Msa1175750:five_prime_UTR
TGCCATCTTCATATGTTCAA+AGG 0.494987 8_1:-7280168 Msa1175750:CDS
ACAAAGTTTGAGATTTGAAG+AGG 0.495050 8_1:-7280704 Msa1175750:CDS
AAGCTAGGATATATATTTGA+AGG 0.498992 8_1:+7281622 None:intergenic
CTGGGGTGACGGGGAACATA+GGG 0.501084 8_1:-7278258 Msa1175750:three_prime_UTR
GCCATCTTCATATGTTCAAA+GGG 0.503887 8_1:-7280167 Msa1175750:intron
ACACCCCGCCAATAATGCTT+GGG 0.505644 8_1:-7281706 Msa1175750:five_prime_UTR
GATGGTGGTAAAGTGTGGCT+GGG 0.510848 8_1:-7278276 Msa1175750:three_prime_UTR
TTGTGAAGAAAATGAGGTAA+AGG 0.510975 8_1:-7279591 Msa1175750:CDS
TAAAAGAAGTAGAGGGATTG+TGG 0.511254 8_1:+7281544 None:intergenic
GATAATTTCATTCCATAACT+AGG 0.511449 8_1:+7279617 None:intergenic
AGCATTATTGGCGGGGTGTG+TGG 0.511877 8_1:+7281710 None:intergenic
AAAGGACAAAGAATCATTGA+AGG 0.514337 8_1:-7278299 Msa1175750:three_prime_UTR
TTATTGCTTTCTGATTTCAC+TGG 0.515406 8_1:+7280436 None:intergenic
ATGGATTCACAACAAGTTCA+AGG 0.515635 8_1:-7280514 Msa1175750:CDS
AGGTCCCAAGCATTATTGGC+GGG 0.517224 8_1:+7281702 None:intergenic
AATGCTTTAGCTTTCAATGA+GGG 0.528738 8_1:+7281250 None:intergenic
ATGGTGGTAAAGTGTGGCTG+GGG 0.542787 8_1:-7278275 Msa1175750:three_prime_UTR
ACCCTTTGAACATATGAAGA+TGG 0.543479 8_1:+7280166 None:intergenic
GATTTATACCAACAAAAGAA+TGG 0.544282 8_1:+7281296 None:intergenic
ATCACCTTGTGAAGAAAATG+AGG 0.546176 8_1:-7279597 Msa1175750:CDS
TGTTGATCTAAAAGAAGTAG+AGG 0.546787 8_1:+7281536 None:intergenic
GAGATATGCTAGGCTAAGCT+AGG 0.547596 8_1:+7281607 None:intergenic
ATCATTACCATACGGAATGT+TGG 0.549626 8_1:-7281276 Msa1175750:five_prime_UTR
TTTGGGGTATTACTCATATG+GGG 0.549873 8_1:-7281356 Msa1175750:five_prime_UTR
ATTGAAGAAGACTGTAAGCT+AGG 0.552236 8_1:-7278443 Msa1175750:CDS
TAGCTCACAAAATAGAGATA+GGG 0.552277 8_1:-7278183 Msa1175750:three_prime_UTR
GTTGATCTAAAAGAAGTAGA+GGG 0.563857 8_1:+7281537 None:intergenic
TGTAAAACCATAAGAAGAAG+CGG 0.577295 8_1:+7281326 None:intergenic
ACAAAGAATCATTGAAGGGA+TGG 0.580460 8_1:-7278294 Msa1175750:three_prime_UTR
TGGTATAAATCATTACCATA+CGG 0.581644 8_1:-7281284 Msa1175750:five_prime_UTR
ATGTAAGCTATGTCTTCCCA+TGG 0.586787 8_1:+7280544 None:intergenic
AAGGTCCCAAGCATTATTGG+CGG 0.592576 8_1:+7281701 None:intergenic
ACAAGTTCAAGGCGCAACAT+TGG 0.592711 8_1:-7280503 Msa1175750:CDS
AAAGTGTGGCTGGGGTGACG+GGG 0.594048 8_1:-7278267 Msa1175750:three_prime_UTR
TATAAGCCTAAAACCTTGGG+GGG 0.596096 8_1:-7278343 Msa1175750:three_prime_UTR
AAGCCTCTCCATGATCAAAG+TGG 0.604207 8_1:+7281200 None:intergenic
TAATGCTTTAGCTTTCAATG+AGG 0.607199 8_1:+7281249 None:intergenic
AAGAATCATTGAAGGGATGG+TGG 0.614094 8_1:-7278291 Msa1175750:three_prime_UTR
TTGTGGTAAGAAATGAAAGG+TGG 0.615297 8_1:+7281561 None:intergenic
AGGTGGAAACTTCTTAAATG+GGG 0.615676 8_1:+7281578 None:intergenic
ACTCTACTCCTTCAATCTCA+AGG 0.617899 8_1:-7279396 Msa1175750:intron
ATACATACACAAGAATTGAT+GGG 0.621363 8_1:+7281171 None:intergenic
AGGGTGACCAACATTCCGTA+TGG 0.622271 8_1:+7281269 None:intergenic
GGTCCCAAGCATTATTGGCG+GGG 0.624353 8_1:+7281703 None:intergenic
AAGGACAAAGAATCATTGAA+GGG 0.624798 8_1:-7278298 Msa1175750:three_prime_UTR
TGAGAGACCTAAGAACACTA+AGG 0.629812 8_1:+7280191 None:intergenic
CTATAAGCCTAAAACCTTGG+GGG 0.634648 8_1:-7278344 Msa1175750:three_prime_UTR
ACTCTTAAGTCTCACAACAA+AGG 0.637326 8_1:+7281467 None:intergenic
GACCAAGCATCAATAATTGG+AGG 0.640978 8_1:-7279749 Msa1175750:CDS
AGGTGTGTGTGAGAGAGAGT+TGG 0.641221 8_1:+7281642 None:intergenic
GGGGTTGCAAGAGATATGCT+AGG 0.641732 8_1:+7281597 None:intergenic
AATCTCAACAAGGAACAACA+AGG 0.648093 8_1:-7280327 Msa1175750:CDS
GCTATAAGCCTAAAACCTTG+GGG 0.651985 8_1:-7278345 Msa1175750:three_prime_UTR
ACACCACTTTGATCATGGAG+AGG 0.659194 8_1:-7281203 Msa1175750:exon
ATCTCAACAAGGAACAACAA+GGG 0.668773 8_1:-7280326 Msa1175750:CDS
AATTTCATTCCATAACTAGG+TGG 0.671528 8_1:+7279620 None:intergenic
TCATGTTCCAAATCTCAACA+AGG 0.700363 8_1:-7280337 Msa1175750:CDS
GAGACCTAAGAACACTAAGG+TGG 0.704555 8_1:+7280194 None:intergenic
GGATTGTGGTAAGAAATGAA+AGG 0.708938 8_1:+7281558 None:intergenic
GAAGGGATGGTGGTAAAGTG+TGG 0.727137 8_1:-7278281 Msa1175750:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AACAAAAGAGTATATTTTTT+TGG - chr8_1:7278235-7278254 Msa1175750:three_prime_UTR 15.0%
!!! ACAAAAGAGTATATTTTTTT+GGG - chr8_1:7278236-7278255 Msa1175750:three_prime_UTR 15.0%
!! TAAATAATTCAAAAGAAGTA+AGG + chr8_1:7278722-7278741 None:intergenic 15.0%
!!! TTAATTTTTTTTCAGTTCTT+TGG - chr8_1:7278846-7278865 Msa1175750:intron 15.0%
!!! TTTATGTTTTAAAAATCACT+TGG - chr8_1:7279791-7279810 Msa1175750:intron 15.0%
!!! TTATGTTTTAAAAATCACTT+GGG - chr8_1:7279792-7279811 Msa1175750:intron 15.0%
!!! ATAAAAAAGAATGAAGATTT+TGG - chr8_1:7279944-7279963 Msa1175750:intron 15.0%
!!! TAAAAAAGAATGAAGATTTT+GGG - chr8_1:7279945-7279964 Msa1175750:intron 15.0%
!! TTTATAATGATAAACAATGT+TGG + chr8_1:7280385-7280404 None:intergenic 15.0%
!!! ATTTTTTTCATTTATGTGTA+TGG + chr8_1:7280715-7280734 None:intergenic 15.0%
!!! CAAAAGAGTATATTTTTTTG+GGG - chr8_1:7278237-7278256 Msa1175750:three_prime_UTR 20.0%
!!! ATTTATTACCATTCTTTTGT+TGG - chr8_1:7278305-7278324 Msa1175750:three_prime_UTR 20.0%
!!! TGCATTACATTTTTTTTTCT+TGG - chr8_1:7278477-7278496 Msa1175750:intron 20.0%
!!! AGAAGAGAAATGTAATTTTT+AGG + chr8_1:7278592-7278611 None:intergenic 20.0%
!! AATATATGCTTTAATGAATG+AGG + chr8_1:7278699-7278718 None:intergenic 20.0%
!!! AAAACTTTCAAACACTTTTA+AGG - chr8_1:7279024-7279043 Msa1175750:intron 20.0%
!!! GTTAAAAATCCAATCTTTTT+TGG - chr8_1:7279551-7279570 Msa1175750:CDS 20.0%
!! TATACAAAACCAAAAAAGAT+TGG + chr8_1:7279563-7279582 None:intergenic 20.0%
!!! TTTTTTGGTTTTGTATACAA+GGG - chr8_1:7279566-7279585 Msa1175750:CDS 20.0%
!! TTGTTTAATGTTTATGTGAT+AGG - chr8_1:7279835-7279854 Msa1175750:intron 20.0%
!! TGTTTAATGTTTATGTGATA+GGG - chr8_1:7279836-7279855 Msa1175750:intron 20.0%
!! AAAATGTGTTTAATACAATC+TGG + chr8_1:7280966-7280985 None:intergenic 20.0%
!! TTATTAATTGGAATGTTAGT+TGG - chr8_1:7281491-7281510 Msa1175750:five_prime_UTR 20.0%
!!! TAGATTTTCTCTAAGATTAA+TGG - chr8_1:7281695-7281714 Msa1175750:five_prime_UTR 20.0%
! AAGCTAGGATATATATTTGA+AGG + chr8_1:7277990-7278009 None:intergenic 25.0%
! GATTTATACCAACAAAAGAA+TGG + chr8_1:7278316-7278335 None:intergenic 25.0%
! TGGTATAAATCATTACCATA+CGG - chr8_1:7278325-7278344 Msa1175750:three_prime_UTR 25.0%
! ATACATACACAAGAATTGAT+GGG + chr8_1:7278441-7278460 None:intergenic 25.0%
! AATACATACACAAGAATTGA+TGG + chr8_1:7278442-7278461 None:intergenic 25.0%
! TTAATGAATGAGGATGAATT+TGG + chr8_1:7278689-7278708 None:intergenic 25.0%
! TTTGTTCATCAAGTAATGTT+TGG + chr8_1:7278890-7278909 None:intergenic 25.0%
!!! TGAAAGTTTTGTTCTTTCAA+TGG + chr8_1:7279014-7279033 None:intergenic 25.0%
! TTCAACATATGAAAAAACCA+TGG - chr8_1:7279048-7279067 Msa1175750:intron 25.0%
! TCAACATATGAAAAAACCAT+GGG - chr8_1:7279049-7279068 Msa1175750:intron 25.0%
!!! AGAAAGGATTTTGAAGAAAA+GGG + chr8_1:7279517-7279536 None:intergenic 25.0%
!!! AAGAAAGGATTTTGAAGAAA+AGG + chr8_1:7279518-7279537 None:intergenic 25.0%
! ACATGAAAATCTCAAAAGAA+AGG + chr8_1:7279533-7279552 None:intergenic 25.0%
!!! CTTTTTTGGTTTTGTATACA+AGG - chr8_1:7279565-7279584 Msa1175750:CDS 25.0%
!!! AATTGATTTTGTGAAAGAGT+TGG - chr8_1:7279886-7279905 Msa1175750:intron 25.0%
! GATAATTTCATTCCATAACT+AGG + chr8_1:7279995-7280014 None:intergenic 25.0%
! GAAAATTGAGTGCAAAAAAA+AGG - chr8_1:7280102-7280121 Msa1175750:intron 25.0%
! AAGATTAGAGAAATAAGAAG+TGG + chr8_1:7280596-7280615 None:intergenic 25.0%
! ATAGAACACACTATTTGAAA+GGG - chr8_1:7280629-7280648 Msa1175750:CDS 25.0%
! TATTTATTCATTTGCACATC+AGG - chr8_1:7280776-7280795 Msa1175750:intron 25.0%
! TAAATAACGAGCTGTATATA+TGG - chr8_1:7281112-7281131 Msa1175750:intron 25.0%
! AAATAACGAGCTGTATATAT+GGG - chr8_1:7281135-7281154 Msa1175750:intron 25.0%
! ATATTCAGCTACATCAATAA+TGG - chr8_1:7281223-7281242 Msa1175750:five_prime_UTR 25.0%
! GATATATGTAGACAAGAAAT+TGG + chr8_1:7281379-7281398 None:intergenic 25.0%
! TGAGATGTATCATGTTAATT+AGG - chr8_1:7281403-7281422 Msa1175750:five_prime_UTR 25.0%
! GTTTCACTCTGTTTATTAAT+TGG - chr8_1:7281479-7281498 Msa1175750:five_prime_UTR 25.0%
! CTTTCATGAATTGAGAAATT+AGG - chr8_1:7281559-7281578 Msa1175750:five_prime_UTR 25.0%
AAGGTGGAAACTTCTTAAAT+GGG + chr8_1:7278035-7278054 None:intergenic 30.0%
AAAGGTGGAAACTTCTTAAA+TGG + chr8_1:7278036-7278055 None:intergenic 30.0%
GTTGATCTAAAAGAAGTAGA+GGG + chr8_1:7278075-7278094 None:intergenic 30.0%
TGTTGATCTAAAAGAAGTAG+AGG + chr8_1:7278076-7278095 None:intergenic 30.0%
!!! TTTTTGGGGTATTACTCATA+TGG - chr8_1:7278251-7278270 Msa1175750:three_prime_UTR 30.0%
!!! TTTTGGGGTATTACTCATAT+GGG - chr8_1:7278252-7278271 Msa1175750:three_prime_UTR 30.0%
TGTAAAACCATAAGAAGAAG+CGG + chr8_1:7278286-7278305 None:intergenic 30.0%
!! AATGCTTTAGCTTTCAATGA+GGG + chr8_1:7278362-7278381 None:intergenic 30.0%
!! TAATGCTTTAGCTTTCAATG+AGG + chr8_1:7278363-7278382 None:intergenic 30.0%
CCTTTCTTGATTCTACAAAT+AGG + chr8_1:7278510-7278529 None:intergenic 30.0%
CCTATTTGTAGAATCAAGAA+AGG - chr8_1:7278507-7278526 Msa1175750:intron 30.0%
! AATTTGGAGTTTGGTAAGAA+TGG + chr8_1:7278673-7278692 None:intergenic 30.0%
AGAAAAAATGAAGCAGTGTT+TGG + chr8_1:7278770-7278789 None:intergenic 30.0%
! ACAAAGTTTGAGATTTGAAG+AGG - chr8_1:7278905-7278924 Msa1175750:intron 30.0%
!! CTTTGAAGCATTTGAAGAAA+TGG + chr8_1:7278969-7278988 None:intergenic 30.0%
TCTTTCAATGGAAAAAACTG+TGG + chr8_1:7279002-7279021 None:intergenic 30.0%
TTATTGCTTTCTGATTTCAC+TGG + chr8_1:7279176-7279195 None:intergenic 30.0%
!!! CTGTTTTTGTTTCTTCTTGT+TGG + chr8_1:7279247-7279266 None:intergenic 30.0%
AACAAGACCAGTTAAGAATA+AGG - chr8_1:7279325-7279344 Msa1175750:intron 30.0%
ACATCTTCCTTATTCTTAAC+TGG + chr8_1:7279335-7279354 None:intergenic 30.0%
AATCTCTTGAAGCACAAAAA+AGG - chr8_1:7279921-7279940 Msa1175750:intron 30.0%
AATTTCATTCCATAACTAGG+TGG + chr8_1:7279992-7280011 None:intergenic 30.0%
! TTTACCTCATTTTCTTCACA+AGG + chr8_1:7280019-7280038 None:intergenic 30.0%
TTGTGAAGAAAATGAGGTAA+AGG - chr8_1:7280018-7280037 Msa1175750:intron 30.0%
!!! CTCAATTTTCAAGTTCACAT+GGG + chr8_1:7280092-7280111 None:intergenic 30.0%
!!! ACTCAATTTTCAAGTTCACA+TGG + chr8_1:7280093-7280112 None:intergenic 30.0%
! GATAAAGGTTATTGTTGCTT+TGG - chr8_1:7280135-7280154 Msa1175750:intron 30.0%
!! TTGTTGCTTTGGAAAATCTT+AGG - chr8_1:7280146-7280165 Msa1175750:intron 30.0%
ACTCAAAAGATGTGATGTTT+AGG + chr8_1:7280186-7280205 None:intergenic 30.0%
GAATAATACCTTGAGATTGA+AGG + chr8_1:7280224-7280243 None:intergenic 30.0%
CATAGAACACACTATTTGAA+AGG - chr8_1:7280628-7280647 Msa1175750:CDS 30.0%
TAGAACACACTATTTGAAAG+GGG - chr8_1:7280630-7280649 Msa1175750:CDS 30.0%
ACTCTAATGTTGAGTTTATG+AGG - chr8_1:7280862-7280881 Msa1175750:intron 30.0%
!! TTCAGCTAGTTTCTAGATTT+TGG - chr8_1:7280932-7280951 Msa1175750:intron 30.0%
AAAGGACAAAGAATCATTGA+AGG - chr8_1:7281310-7281329 Msa1175750:five_prime_UTR 30.0%
AAGGACAAAGAATCATTGAA+GGG - chr8_1:7281311-7281330 Msa1175750:five_prime_UTR 30.0%
TAGCTCACAAAATAGAGATA+GGG - chr8_1:7281426-7281445 Msa1175750:five_prime_UTR 30.0%
!! CGTGTTGCTTATTAATTTCT+TGG - chr8_1:7281534-7281553 Msa1175750:five_prime_UTR 30.0%
AGGTGGAAACTTCTTAAATG+GGG + chr8_1:7278034-7278053 None:intergenic 35.0%
TTGTGGTAAGAAATGAAAGG+TGG + chr8_1:7278051-7278070 None:intergenic 35.0%
GGATTGTGGTAAGAAATGAA+AGG + chr8_1:7278054-7278073 None:intergenic 35.0%
TAAAAGAAGTAGAGGGATTG+TGG + chr8_1:7278068-7278087 None:intergenic 35.0%
ACTCTTAAGTCTCACAACAA+AGG + chr8_1:7278145-7278164 None:intergenic 35.0%
GAGACTTAAGAGTTGTTTGT+TGG - chr8_1:7278152-7278171 Msa1175750:three_prime_UTR 35.0%
! TTTGGGGTATTACTCATATG+GGG - chr8_1:7278253-7278272 Msa1175750:three_prime_UTR 35.0%
TCTTATTCCGCTTCTTCTTA+TGG - chr8_1:7278276-7278295 Msa1175750:three_prime_UTR 35.0%
ATCATTACCATACGGAATGT+TGG - chr8_1:7278333-7278352 Msa1175750:three_prime_UTR 35.0%
CATATACACCACTTTGATCA+TGG - chr8_1:7278401-7278420 Msa1175750:CDS 35.0%
TTTGGTAAGAATGGAGAAAG+GGG + chr8_1:7278664-7278683 None:intergenic 35.0%
GTTTGGTAAGAATGGAGAAA+GGG + chr8_1:7278665-7278684 None:intergenic 35.0%
AGTTTGGTAAGAATGGAGAA+AGG + chr8_1:7278666-7278685 None:intergenic 35.0%
! ATGAGGATGAATTTGGAGTT+TGG + chr8_1:7278682-7278701 None:intergenic 35.0%
CATAGCTTACATTCCTAGAA+TGG - chr8_1:7279076-7279095 Msa1175750:intron 35.0%
!! ACTTGTTGTGAATCCATTCT+AGG + chr8_1:7279092-7279111 None:intergenic 35.0%
ATGGATTCACAACAAGTTCA+AGG - chr8_1:7279095-7279114 Msa1175750:intron 35.0%
TCATGTTCCAAATCTCAACA+AGG - chr8_1:7279272-7279291 Msa1175750:intron 35.0%
TGTTGTTCCTTGTTGAGATT+TGG + chr8_1:7279282-7279301 None:intergenic 35.0%
AATCTCAACAAGGAACAACA+AGG - chr8_1:7279282-7279301 Msa1175750:intron 35.0%
ATCTCAACAAGGAACAACAA+GGG - chr8_1:7279283-7279302 Msa1175750:intron 35.0%
! ATATTGCTGTTGAACGCAAT+AGG - chr8_1:7279375-7279394 Msa1175750:intron 35.0%
TGCCATCTTCATATGTTCAA+AGG - chr8_1:7279441-7279460 Msa1175750:CDS 35.0%
GCCATCTTCATATGTTCAAA+GGG - chr8_1:7279442-7279461 Msa1175750:CDS 35.0%
ACCCTTTGAACATATGAAGA+TGG + chr8_1:7279446-7279465 None:intergenic 35.0%
! TTTGTATACAAGGGCATGTT+TGG - chr8_1:7279575-7279594 Msa1175750:CDS 35.0%
ATCACCTTGTGAAGAAAATG+AGG - chr8_1:7280012-7280031 Msa1175750:intron 35.0%
ATTGAGTGCAAAAAAAAGGC+TGG - chr8_1:7280106-7280125 Msa1175750:intron 35.0%
! AAAGGCTGGTCAATTGATAA+AGG - chr8_1:7280120-7280139 Msa1175750:intron 35.0%
TAAATGTGGTGAACTCACTA+TGG - chr8_1:7280296-7280315 Msa1175750:CDS 35.0%
GATAAACAATGTTGGAACCA+AGG + chr8_1:7280377-7280396 None:intergenic 35.0%
AGCTAATGCTATGAGTATGA+GGG - chr8_1:7280506-7280525 Msa1175750:CDS 35.0%
AGCTCATAGATTAACTAAGG+TGG - chr8_1:7280902-7280921 Msa1175750:intron 35.0%
ATTGAAGAAGACTGTAAGCT+AGG - chr8_1:7281166-7281185 Msa1175750:intron 35.0%
TAGCTATAAGCCTAAAACCT+TGG - chr8_1:7281262-7281281 Msa1175750:five_prime_UTR 35.0%
AGCTATAAGCCTAAAACCTT+GGG - chr8_1:7281263-7281282 Msa1175750:five_prime_UTR 35.0%
ACAAAGAATCATTGAAGGGA+TGG - chr8_1:7281315-7281334 Msa1175750:five_prime_UTR 35.0%
GTAGCTCACAAAATAGAGAT+AGG - chr8_1:7281425-7281444 Msa1175750:five_prime_UTR 35.0%
TCGACTGCGATTGATATATA+TGG - chr8_1:7281590-7281609 Msa1175750:five_prime_UTR 35.0%
TGTAAGGTCCCAAGCATTAT+TGG + chr8_1:7277914-7277933 None:intergenic 40.0%
! GAAGGGTTGTCTGATTTGTA+AGG + chr8_1:7277930-7277949 None:intergenic 40.0%
TAAGAGAGAGAGAGAGAGAA+GGG + chr8_1:7277947-7277966 None:intergenic 40.0%
ATGTAAGCTATGTCTTCCCA+TGG + chr8_1:7279068-7279087 None:intergenic 40.0%
CACTAAGGTGGTCATTCATT+TGG + chr8_1:7279406-7279425 None:intergenic 40.0%
ATGACCACCTTAGTGTTCTT+AGG - chr8_1:7279411-7279430 Msa1175750:CDS 40.0%
TGAGAGACCTAAGAACACTA+AGG + chr8_1:7279421-7279440 None:intergenic 40.0%
GGTGACCAAGCATCAATAAT+TGG - chr8_1:7279857-7279876 Msa1175750:intron 40.0%
GACCAAGCATCAATAATTGG+AGG - chr8_1:7279860-7279879 Msa1175750:intron 40.0%
CTCCTCCAATTATTGATGCT+TGG + chr8_1:7279865-7279884 None:intergenic 40.0%
! GGTGATGATGATGATGATGA+GGG + chr8_1:7279971-7279990 None:intergenic 40.0%
! TGGTGATGATGATGATGATG+AGG + chr8_1:7279972-7279991 None:intergenic 40.0%
TCATCATCACCACCTAGTTA+TGG - chr8_1:7279980-7279999 Msa1175750:intron 40.0%
ACTCTACTCCTTCAATCTCA+AGG - chr8_1:7280213-7280232 Msa1175750:CDS 40.0%
! CTTGCTATCTAAGCAAAACC+TGG - chr8_1:7280348-7280367 Msa1175750:CDS 40.0%
AAGAGTTGAGTTTGTCCACA+AGG - chr8_1:7280473-7280492 Msa1175750:CDS 40.0%
TTTGTCCACAAGGTAAAAGC+TGG - chr8_1:7280483-7280502 Msa1175750:CDS 40.0%
GAGCTAATGCTATGAGTATG+AGG - chr8_1:7280505-7280524 Msa1175750:CDS 40.0%
TATGAGGAGACAAGCAAATG+AGG - chr8_1:7280878-7280897 Msa1175750:intron 40.0%
GGCAGCTCATAGATTAACTA+AGG - chr8_1:7280899-7280918 Msa1175750:intron 40.0%
GCTATAAGCCTAAAACCTTG+GGG - chr8_1:7281264-7281283 Msa1175750:five_prime_UTR 40.0%
CTATAAGCCTAAAACCTTGG+GGG - chr8_1:7281265-7281284 Msa1175750:five_prime_UTR 40.0%
TATAAGCCTAAAACCTTGGG+GGG - chr8_1:7281266-7281285 Msa1175750:five_prime_UTR 40.0%
GGGTTGTTGCAGAAGAATAA+AGG - chr8_1:7281292-7281311 Msa1175750:five_prime_UTR 40.0%
AAGAATCATTGAAGGGATGG+TGG - chr8_1:7281318-7281337 Msa1175750:five_prime_UTR 40.0%
AAGGTCCCAAGCATTATTGG+CGG + chr8_1:7277911-7277930 None:intergenic 45.0%
GTAAGAGAGAGAGAGAGAGA+AGG + chr8_1:7277948-7277967 None:intergenic 45.0%
GAGATATGCTAGGCTAAGCT+AGG + chr8_1:7278005-7278024 None:intergenic 45.0%
ACACCACTTTGATCATGGAG+AGG - chr8_1:7278406-7278425 Msa1175750:CDS 45.0%
AAGCCTCTCCATGATCAAAG+TGG + chr8_1:7278412-7278431 None:intergenic 45.0%
TTGATCATGGAGAGGCTTCA+AGG - chr8_1:7278414-7278433 Msa1175750:CDS 45.0%
ACAAGTTCAAGGCGCAACAT+TGG - chr8_1:7279106-7279125 Msa1175750:intron 45.0%
GAGACCTAAGAACACTAAGG+TGG + chr8_1:7279418-7279437 None:intergenic 45.0%
TAAGCAAAACCTGGCTTCCT+TGG - chr8_1:7280357-7280376 Msa1175750:CDS 45.0%
! TAGCTCCAGCTTTTACCTTG+TGG + chr8_1:7280491-7280510 None:intergenic 45.0%
!!! TTATTTTATTTTTTTAAATG+TGG - chr8_1:7280282-7280301 Msa1175750:CDS 5.0%
!!! AAATTTACTAATTTTAAATA+TGG + chr8_1:7280439-7280458 None:intergenic 5.0%
!! TTAAACTAAAATAATTTAAT+CGG - chr8_1:7280734-7280753 Msa1175750:CDS 5.0%
ACACCCCGCCAATAATGCTT+GGG - chr8_1:7277903-7277922 Msa1175750:three_prime_UTR 50.0%
AGGTCCCAAGCATTATTGGC+GGG + chr8_1:7277910-7277929 None:intergenic 50.0%
AGGTGTGTGTGAGAGAGAGT+TGG + chr8_1:7277970-7277989 None:intergenic 50.0%
GGGGTTGCAAGAGATATGCT+AGG + chr8_1:7278015-7278034 None:intergenic 50.0%
AGGGTGACCAACATTCCGTA+TGG + chr8_1:7278343-7278362 None:intergenic 50.0%
ATGTTGGAACCAAGGAAGCC+AGG + chr8_1:7280369-7280388 None:intergenic 50.0%
CCTAAAACCTTGGGGGGAAT+GGG - chr8_1:7281272-7281291 Msa1175750:five_prime_UTR 50.0%
! GAAGGGATGGTGGTAAAGTG+TGG - chr8_1:7281328-7281347 Msa1175750:five_prime_UTR 50.0%
! GATGGTGGTAAAGTGTGGCT+GGG - chr8_1:7281333-7281352 Msa1175750:five_prime_UTR 50.0%
ATGGTGGTAAAGTGTGGCTG+GGG - chr8_1:7281334-7281353 Msa1175750:five_prime_UTR 50.0%
AGCATTATTGGCGGGGTGTG+TGG + chr8_1:7277902-7277921 None:intergenic 55.0%
CACACCCCGCCAATAATGCT+TGG - chr8_1:7277902-7277921 Msa1175750:three_prime_UTR 55.0%
GGTCCCAAGCATTATTGGCG+GGG + chr8_1:7277909-7277928 None:intergenic 55.0%
GCCTAAAACCTTGGGGGGAA+TGG - chr8_1:7281271-7281290 Msa1175750:five_prime_UTR 55.0%
! CCCATTCCCCCCAAGGTTTT+AGG + chr8_1:7281275-7281294 None:intergenic 55.0%
! GGATGGTGGTAAAGTGTGGC+TGG - chr8_1:7281332-7281351 Msa1175750:five_prime_UTR 55.0%
GTAAAGTGTGGCTGGGGTGA+CGG - chr8_1:7281340-7281359 Msa1175750:five_prime_UTR 55.0%
TAAAGTGTGGCTGGGGTGAC+GGG - chr8_1:7281341-7281360 Msa1175750:five_prime_UTR 55.0%
GCAACAACCCATTCCCCCCA+AGG + chr8_1:7281282-7281301 None:intergenic 60.0%
AAAGTGTGGCTGGGGTGACG+GGG - chr8_1:7281342-7281361 Msa1175750:five_prime_UTR 60.0%
!! CTGGGGTGACGGGGAACATA+GGG - chr8_1:7281351-7281370 Msa1175750:five_prime_UTR 60.0%
!! GCTGGGGTGACGGGGAACAT+AGG - chr8_1:7281350-7281369 Msa1175750:five_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 7277885 7281746 7277885 ID=Msa1175750;Name=Msa1175750
chr8_1 mRNA 7277885 7281746 7277885 ID=Msa1175750-mRNA-1;Parent=Msa1175750;Name=Msa1175750-mRNA-1;_AED=0.12;_eAED=0.12;_QI=535|1|1|1|1|1|4|494|366
chr8_1 exon 7277885 7278465 7277885 ID=Msa1175750-mRNA-1:exon:2595;Parent=Msa1175750-mRNA-1
chr8_1 exon 7279397 7279774 7279397 ID=Msa1175750-mRNA-1:exon:2594;Parent=Msa1175750-mRNA-1
chr8_1 exon 7280168 7280770 7280168 ID=Msa1175750-mRNA-1:exon:2593;Parent=Msa1175750-mRNA-1
chr8_1 exon 7281179 7281746 7281179 ID=Msa1175750-mRNA-1:exon:2592;Parent=Msa1175750-mRNA-1
chr8_1 five_prime_UTR 7281212 7281746 7281212 ID=Msa1175750-mRNA-1:five_prime_utr;Parent=Msa1175750-mRNA-1
chr8_1 CDS 7281179 7281211 7281179 ID=Msa1175750-mRNA-1:cds;Parent=Msa1175750-mRNA-1
chr8_1 CDS 7280168 7280770 7280168 ID=Msa1175750-mRNA-1:cds;Parent=Msa1175750-mRNA-1
chr8_1 CDS 7279397 7279774 7279397 ID=Msa1175750-mRNA-1:cds;Parent=Msa1175750-mRNA-1
chr8_1 CDS 7278379 7278465 7278379 ID=Msa1175750-mRNA-1:cds;Parent=Msa1175750-mRNA-1
chr8_1 three_prime_UTR 7277885 7278378 7277885 ID=Msa1175750-mRNA-1:three_prime_utr;Parent=Msa1175750-mRNA-1
Gene Sequence

>Msa1175750

ATGGAGAGGCTTCAAGGACCCATCAATTCTTGTTTCTTTGGTGAAGTGAATTGTTTAGACCAAACATTACTTGATGAACAAAGTTTGAGATTTGAAGAGGAAGAACAATTTCTCATATCAAGTTTAGAAGATAACATGCCATTTCTTCAAATGCTTCAAAGTGTTGAATCTCCACAGTTTTTTCCATTGAAAGAACAAAACTTTCAAACACTTTTAAGGCTTCAACATATGAAAAAACCATGGGAAGACATAGCTTACATTCCTAGAATGGATTCACAACAAGTTCAAGGCGCAACATTGGAATTTGAAAGCTGTGTAACACAAGAAATGTTAGAGATGCAATCACCAGTGAAATCAGAAAGCAATAAAGTTTCACTTTCAACTTCATGCATTGAGAAAACAAGTTATGAATGTAACCAACAAGAAGAAACAAAAACAGCACAATCATGTTCCAAATCTCAACAAGGAACAACAAGGGAAAAGAGAAAGAGAAAAAGAACAAGACCAGTTAAGAATAAGGAAGATGTTGAGAATCAAAGAATGACACATATTGCTGTTGAACGCAATAGGAGACGCCAAATGAATGACCACCTTAGTGTTCTTAGGTCTCTCATGCCATCTTCATATGTTCAAAGGGGTGACCAAGCATCAATAATTGGAGGAGCAATTGATTTTGTGAAAGAGTTGGAACAATTGCTTGAATCTCTTGAAGCACAAAAAAGGATAAAAAAGAATGAAGATTTTGGGCCCTCATCATCATCATCATCACCACCTAGTTATGGAATGAAATTATCACCTTGTGAAGAAAATGAGGTAAAGGCAGAAAACAAATCAGAAGCAGCAGATATAAAAGTAACATTGATTCAAACCCATGTGAACTTGAAAATTGAGTGCAAAAAAAAGGCTGGTCAATTGATAAAGGTTATTGTTGCTTTGGAAAATCTTAGGCTAACTATTCTTCACCTAAACATCACATCTTTTGAGTCTTCTGTACTCTACTCCTTCAATCTCAAGATTGAAGAAGACTGTAAGCTAGGCACAGCAAATGACATAGCAGAAGCAGTTCATCAAATATTCAGCTACATCAATAATGGTAGCTAA

Protein sequence

>Msa1175750

MERLQGPINSCFFGEVNCLDQTLLDEQSLRFEEEEQFLISSLEDNMPFLQMLQSVESPQFFPLKEQNFQTLLRLQHMKKPWEDIAYIPRMDSQQVQGATLEFESCVTQEMLEMQSPVKSESNKVSLSTSCIEKTSYECNQQEETKTAQSCSKSQQGTTREKRKRKRTRPVKNKEDVENQRMTHIAVERNRRRQMNDHLSVLRSLMPSSYVQRGDQASIIGGAIDFVKELEQLLESLEAQKRIKKNEDFGPSSSSSSPPSYGMKLSPCEENEVKAENKSEAADIKVTLIQTHVNLKIECKKKAGQLIKVIVALENLRLTILHLNITSFESSVLYSFNLKIEEDCKLGTANDIAEAVHQIFSYINNGS*