AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1235890


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1235890 MtrunA17_Chr8g0345871 98.082 365 7 0 1 365 1 365 0.0 738
Msa1235890 MtrunA17_Chr3g0132471 48.511 235 103 3 142 358 75 309 1.07e-69 221
Msa1235890 MtrunA17_Chr7g0273081 51.163 215 95 2 157 361 92 306 4.56e-68 217
Msa1235890 MtrunA17_Chr0c01g0489461 54.795 219 80 5 162 362 176 393 2.24e-66 215
Msa1235890 MtrunA17_Chr1g0191571 51.980 202 83 3 174 361 129 330 7.73e-63 204
Msa1235890 MtrunA17_Chr8g0366551 50.739 203 85 3 171 361 114 313 1.90e-61 200
Msa1235890 MtrunA17_Chr5g0426851 46.330 218 95 4 157 357 76 288 1.07e-59 194
Msa1235890 MtrunA17_Chr2g0287761 45.455 187 93 2 181 359 1 186 2.12e-43 149
Msa1235890 MtrunA17_Chr1g0158941 37.168 226 112 5 162 358 68 292 8.88e-37 134
Msa1235890 MtrunA17_Chr3g0126381 33.503 197 79 5 213 358 4 199 8.42e-21 89.4
Msa1235890 MtrunA17_Chr1g0185621 28.495 186 123 4 183 360 476 659 7.50e-14 72.8
Msa1235890 MtrunA17_Chr3g0126361 55.932 59 22 1 158 212 74 132 3.67e-13 66.6
Msa1235890 MtrunA17_Chr5g0400621 28.188 149 102 2 183 331 158 301 7.68e-12 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1235890 AT3G61950.1 43.264 386 158 10 1 358 1 353 1.65e-83 258
Msa1235890 AT2G46810.1 42.895 380 149 12 15 358 22 369 3.72e-80 250
Msa1235890 AT2G46810.3 42.714 398 147 14 1 358 1 357 5.38e-80 249
Msa1235890 AT3G61950.3 42.896 366 148 10 1 338 1 333 3.59e-75 236
Msa1235890 AT2G46810.2 43.675 332 128 9 51 358 1 297 5.57e-73 229
Msa1235890 AT4G01460.1 44.144 333 130 6 40 363 20 305 3.96e-70 222
Msa1235890 AT4G01460.2 44.144 333 130 6 40 363 20 305 3.96e-70 222
Msa1235890 AT3G61950.2 42.771 332 136 7 51 358 1 302 8.68e-70 221
Msa1235890 AT2G46810.4 40.278 360 128 10 51 358 1 325 6.08e-67 214
Msa1235890 AT3G24140.2 52.252 222 85 3 161 362 177 397 3.78e-63 207
Msa1235890 AT3G24140.1 52.252 222 85 3 161 362 177 397 4.92e-63 207
Msa1235890 AT3G61950.6 42.308 312 126 7 51 338 1 282 2.26e-61 199
Msa1235890 AT1G22490.1 50.990 202 82 3 171 361 105 300 1.36e-59 195
Msa1235890 AT1G72210.1 50.000 200 90 3 171 361 115 313 6.41e-58 191
Msa1235890 AT1G22490.2 51.397 179 70 3 171 338 105 277 6.10e-52 176
Msa1235890 AT1G72210.2 49.718 177 79 3 171 338 115 290 1.75e-50 171
Msa1235890 AT5G46690.1 45.946 222 89 5 171 361 78 299 7.32e-47 162
Msa1235890 AT3G06120.1 44.134 179 85 2 181 344 1 179 2.91e-40 141
Msa1235890 AT5G65320.1 42.487 193 101 4 175 357 96 288 1.47e-38 139
Msa1235890 AT3G61950.4 40.084 237 89 7 1 212 1 209 1.82e-38 137
Msa1235890 AT3G61950.5 40.084 237 89 7 1 212 1 209 1.82e-38 137
Msa1235890 AT5G46690.2 45.226 199 78 5 171 338 78 276 1.59e-37 137
Msa1235890 AT5G65320.2 42.775 173 90 3 175 338 96 268 3.40e-32 122
Msa1235890 AT5G53210.2 63.889 72 25 1 172 243 94 164 1.95e-24 102
Msa1235890 AT5G53210.1 63.889 72 25 1 172 243 94 164 2.24e-24 102
Msa1235890 AT5G53210.1 41.111 90 52 1 269 358 275 363 3.84e-12 67.4
Msa1235890 AT1G12860.2 30.909 165 97 5 183 338 268 424 8.40e-13 69.7
Msa1235890 AT3G26744.6 30.357 168 98 5 183 338 308 468 9.17e-13 69.7
Msa1235890 AT3G26744.1 30.857 175 99 6 183 345 308 472 1.20e-12 69.3
Msa1235890 AT3G26744.4 30.857 175 99 6 183 345 308 472 1.20e-12 69.3
Msa1235890 AT3G26744.2 30.857 175 99 6 183 345 308 472 1.20e-12 69.3
Msa1235890 AT1G12860.1 31.677 161 93 5 183 334 268 420 1.22e-12 69.3

Find 106 sgRNAs with CRISPR-Local

Find 188 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTTCACTCTGTTTATTAAT+TGG 0.164311 8_2:-14194494 Msa1235890:three_prime_UTR
AAAGGTGGAAACTTCTTAAA+TGG 0.167879 8_2:+14197905 None:intergenic
TCTTATTCCGCTTCTTCTTA+TGG 0.206056 8_2:-14197667 Msa1235890:five_prime_UTR
TGTGTTGCTTATTAATTTCT+TGG 0.209361 8_2:-14194434 Msa1235890:three_prime_UTR
ACTTGTTGTGAATCCATTCT+AGG 0.226170 8_2:+14196879 None:intergenic
TGTAAGGTCCCAAGCATTAT+TGG 0.260136 8_2:+14198031 None:intergenic
CTTTCATGAATTGAGAAATT+AGG 0.271280 8_2:-14194409 Msa1235890:three_prime_UTR
ACATCTTCCTTATTCTTAAC+TGG 0.278715 8_2:+14196636 None:intergenic
AACAAGACCAGTTAAGAATA+AGG 0.304290 8_2:-14196643 Msa1235890:CDS
TTGTTGCTTTGGAAAATCTT+AGG 0.306717 8_2:-14195823 Msa1235890:CDS
CTTTGAAGCATTTGAAGAAA+TGG 0.310096 8_2:+14197002 None:intergenic
GATAAAGGTTATTGTTGCTT+TGG 0.325174 8_2:-14195834 Msa1235890:CDS
TCGACTGCGATTGATATATA+TGG 0.325316 8_2:-14194378 Msa1235890:three_prime_UTR
TGTTGTTCCTTGTTGAGATT+TGG 0.330133 8_2:+14196689 None:intergenic
TGAGATGTATCATGTTAATT+AGG 0.334165 8_2:-14194570 Msa1235890:three_prime_UTR
GATATATGTAGACAAGAAAA+TGG 0.348977 8_2:+14194597 None:intergenic
GGTGACCAAGCATCAATAAT+TGG 0.351169 8_2:-14196109 Msa1235890:CDS
TAAAGTGTGGCTGGGGTGAC+GGG 0.356668 8_2:-14194632 Msa1235890:three_prime_UTR
GTAAAGTGTGGCTGGGGTGA+CGG 0.367312 8_2:-14194633 Msa1235890:three_prime_UTR
ATGACCACCTTAGTGTTCTT+AGG 0.380570 8_2:-14196557 Msa1235890:CDS
CACTAAGGTGGTCATTCATT+TGG 0.381725 8_2:+14196565 None:intergenic
GTAGCTCACAAAATAGAGAT+AGG 0.382254 8_2:-14194548 Msa1235890:three_prime_UTR
ACTCAAAAGATGTGATGTTT+AGG 0.386029 8_2:+14195786 None:intergenic
TTTGTTCATCAAGTAATGTT+TGG 0.386937 8_2:+14197081 None:intergenic
AGCTATAAGCCTAAAACCTT+GGG 0.391798 8_2:-14194710 Msa1235890:three_prime_UTR
GGATGGTGGTAAAGTGTGGC+TGG 0.403422 8_2:-14194641 Msa1235890:three_prime_UTR
CTCCTCCAATTATTGATGCT+TGG 0.405749 8_2:+14196104 None:intergenic
AAGGTGGAAACTTCTTAAAT+GGG 0.406058 8_2:+14197906 None:intergenic
AAAGGCTGGTCAATTGATAA+AGG 0.417902 8_2:-14195849 Msa1235890:CDS
CATAGCTTACATTCCTAGAA+TGG 0.419943 8_2:-14196892 Msa1235890:CDS
GGGTTGTTGCAGAAGAATAA+AGG 0.421184 8_2:-14194681 Msa1235890:three_prime_UTR
AATACATACACAAGAATTGA+TGG 0.427991 8_2:+14197504 None:intergenic
GCTGGGGTGACGGGGAACAT+AGG 0.430744 8_2:-14194623 Msa1235890:three_prime_UTR
TTGATCATGGAGAGGCTTCA+AGG 0.435947 8_2:-14197529 Msa1235890:exon
GAGACTTAAGAGTTGTTTGT+TGG 0.450047 8_2:-14197790 Msa1235890:five_prime_UTR
ATATTCAGCTACATCAATAA+TGG 0.454301 8_2:-14194750 Msa1235890:CDS
TAGCTATAAGCCTAAAACCT+TGG 0.457228 8_2:-14194711 Msa1235890:three_prime_UTR
CATATACACCACTTTGATCA+TGG 0.467083 8_2:-14197542 Msa1235890:exon
TGCCATCTTCATATGTTCAA+AGG 0.473511 8_2:-14196527 Msa1235890:CDS
TTATTAATTGGAATGTTAGT+TGG 0.476712 8_2:-14194482 Msa1235890:three_prime_UTR
TCATCATCACCACCTAGTTA+TGG 0.477590 8_2:-14195989 Msa1235890:CDS
GAAGGGTTGTCTGATTTGTA+AGG 0.479576 8_2:+14198015 None:intergenic
GAATAATACCTTGAGATTGA+AGG 0.480462 8_2:+14195748 None:intergenic
ATATTGCTGTTGAACGCAAT+AGG 0.480469 8_2:-14196593 Msa1235890:CDS
CACACCCCGCCAATAATGCT+TGG 0.481463 8_2:-14198040 Msa1235890:five_prime_UTR
GCCATCTTCATATGTTCAAA+GGG 0.484046 8_2:-14196526 Msa1235890:intron
ACAAAGTTTGAGATTTGAAG+AGG 0.495050 8_2:-14197063 Msa1235890:CDS
AAGCTAGGATATATATTTGA+AGG 0.498992 8_2:+14197951 None:intergenic
CTGGGGTGACGGGGAACATA+GGG 0.501084 8_2:-14194622 Msa1235890:three_prime_UTR
TTGTTGCTTTCTGATTTCAC+TGG 0.503766 8_2:+14196795 None:intergenic
ACACCCCGCCAATAATGCTT+GGG 0.505644 8_2:-14198039 Msa1235890:five_prime_UTR
GATGGTGGTAAAGTGTGGCT+GGG 0.510848 8_2:-14194640 Msa1235890:three_prime_UTR
TTGTGAAGAAAATGAGGTAA+AGG 0.510975 8_2:-14195951 Msa1235890:CDS
GATAATTTCATTCCATAACT+AGG 0.511449 8_2:+14195977 None:intergenic
AGCATTATTGGCGGGGTGTG+TGG 0.511877 8_2:+14198043 None:intergenic
AAAGGACAAAGAATCATTGA+AGG 0.514337 8_2:-14194663 Msa1235890:three_prime_UTR
ATGGATTCACAACAAGTTCA+AGG 0.515635 8_2:-14196873 Msa1235890:CDS
AGGTCCCAAGCATTATTGGC+GGG 0.517224 8_2:+14198035 None:intergenic
TAAAAGAAGCAGAGGGATTG+TGG 0.519536 8_2:+14197873 None:intergenic
AATGCTTTAGCTTTCAATGA+GGG 0.528738 8_2:+14197584 None:intergenic
ATGGTGGTAAAGTGTGGCTG+GGG 0.542787 8_2:-14194639 Msa1235890:three_prime_UTR
ACCCTTTGAACATATGAAGA+TGG 0.543479 8_2:+14196525 None:intergenic
GATTTATACTAACAAAAGAA+TGG 0.544282 8_2:+14197630 None:intergenic
ATCACCTTGTGAAGAAAATG+AGG 0.546176 8_2:-14195957 Msa1235890:CDS
GAGATATGCTAGGCTAAGCT+AGG 0.547596 8_2:+14197936 None:intergenic
CTGTGTAACACAAGAAATGT+TGG 0.548016 8_2:-14196829 Msa1235890:CDS
ATCATTACCATACGGAATGT+TGG 0.549626 8_2:-14197610 Msa1235890:five_prime_UTR
TTTGGGGTATTACTCATATG+GGG 0.549873 8_2:-14197690 Msa1235890:five_prime_UTR
ATTGAAGAAGACTGTAAGCT+AGG 0.552236 8_2:-14194807 Msa1235890:CDS
TAGCTCACAAAATAGAGATA+GGG 0.552277 8_2:-14194547 Msa1235890:three_prime_UTR
TGTAAAACCATAAGAAGAAG+CGG 0.577295 8_2:+14197660 None:intergenic
ACAAAGAATCATTGAAGGGA+TGG 0.580460 8_2:-14194658 Msa1235890:three_prime_UTR
TAGTATAAATCATTACCATA+CGG 0.581644 8_2:-14197618 Msa1235890:five_prime_UTR
ATGTAAGCTATGTCTTCCCA+TGG 0.586787 8_2:+14196903 None:intergenic
AAGGTCCCAAGCATTATTGG+CGG 0.592576 8_2:+14198034 None:intergenic
ACAAGTTCAAGGCGCAACAT+TGG 0.592711 8_2:-14196862 Msa1235890:CDS
AAAGTGTGGCTGGGGTGACG+GGG 0.594048 8_2:-14194631 Msa1235890:three_prime_UTR
TATAAGCCTAAAACCTTGGG+GGG 0.596096 8_2:-14194707 Msa1235890:three_prime_UTR
AAGCCTCTCCATGATCAAAG+TGG 0.604207 8_2:+14197534 None:intergenic
TAATGCTTTAGCTTTCAATG+AGG 0.607199 8_2:+14197583 None:intergenic
GTGTGTGTGTGAGAGAGAGT+TGG 0.612369 8_2:+14197973 None:intergenic
TAAGAGACCTAAGAACACTA+AGG 0.612418 8_2:+14196550 None:intergenic
AAGAATCATTGAAGGGATGG+TGG 0.614094 8_2:-14194655 Msa1235890:three_prime_UTR
TTGTGGTAAGAAATGAAAGG+TGG 0.615297 8_2:+14197890 None:intergenic
AGGTGGAAACTTCTTAAATG+GGG 0.615676 8_2:+14197907 None:intergenic
ACTCTACTCCTTCAATCTCA+AGG 0.617899 8_2:-14195756 Msa1235890:intron
TGTTGATCTAAAAGAAGCAG+AGG 0.618907 8_2:+14197865 None:intergenic
ATACATACACAAGAATTGAT+GGG 0.621363 8_2:+14197505 None:intergenic
AGGGTGACCAACATTCCGTA+TGG 0.622271 8_2:+14197603 None:intergenic
GGTCCCAAGCATTATTGGCG+GGG 0.624353 8_2:+14198036 None:intergenic
AAGGACAAAGAATCATTGAA+GGG 0.624798 8_2:-14194662 Msa1235890:three_prime_UTR
GGTGGTGATGATGATGTTGA+CGG 0.632732 8_2:+14195998 None:intergenic
CTATAAGCCTAAAACCTTGG+GGG 0.634648 8_2:-14194708 Msa1235890:three_prime_UTR
ACTCTTAAGTCTCACAACAA+AGG 0.637326 8_2:+14197800 None:intergenic
GACCAAGCATCAATAATTGG+AGG 0.640978 8_2:-14196106 Msa1235890:CDS
GGGGTTGCAAGAGATATGCT+AGG 0.641732 8_2:+14197926 None:intergenic
GTTGATCTAAAAGAAGCAGA+GGG 0.643371 8_2:+14197866 None:intergenic
AATCTCAACAAGGAACAACA+AGG 0.648093 8_2:-14196686 Msa1235890:CDS
GCTATAAGCCTAAAACCTTG+GGG 0.651985 8_2:-14194709 Msa1235890:three_prime_UTR
ACACCACTTTGATCATGGAG+AGG 0.659194 8_2:-14197537 Msa1235890:exon
ATCTCAACAAGGAACAACAA+GGG 0.668773 8_2:-14196685 Msa1235890:CDS
AATTTCATTCCATAACTAGG+TGG 0.671528 8_2:+14195980 None:intergenic
GAGACCTAAGAACACTAAGG+TGG 0.679484 8_2:+14196553 None:intergenic
TCATGTTCCAAATCTCAACA+AGG 0.700363 8_2:-14196696 Msa1235890:CDS
GGATTGTGGTAAGAAATGAA+AGG 0.708938 8_2:+14197887 None:intergenic
GAAGGGATGGTGGTAAAGTG+TGG 0.727137 8_2:-14194645 Msa1235890:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTTTAATTTATGTGTA+TGG + chr8_2:14197038-14197057 None:intergenic 10.0%
!!! AAACAAAAGAGTATATTTTT+TGG - chr8_2:14194587-14194606 Msa1235890:three_prime_UTR 15.0%
!!! AACAAAAGAGTATATTTTTT+GGG - chr8_2:14194588-14194607 Msa1235890:three_prime_UTR 15.0%
!! TAAATAATTCAAAAGAAGTA+AGG + chr8_2:14195076-14195095 None:intergenic 15.0%
!!! AAAATTTTCAAACACTTTTA+AGG - chr8_2:14195351-14195370 Msa1235890:intron 15.0%
!!! TTATGTTTTAAAAATCACTT+AGG - chr8_2:14196116-14196135 Msa1235890:intron 15.0%
!!! TAAAAAAGAATGAAGATTTT+GGG - chr8_2:14196274-14196293 Msa1235890:intron 15.0%
!! TTTATAATGATAAACAATGT+TGG + chr8_2:14196711-14196730 None:intergenic 15.0%
!!! TAAATTTTCTCTAAGATTAA+TGG - chr8_2:14198022-14198041 Msa1235890:five_prime_UTR 15.0%
!!! ACAAAAGAGTATATTTTTTG+GGG - chr8_2:14194589-14194608 Msa1235890:three_prime_UTR 20.0%
!! GATTTATACTAACAAAAGAA+TGG + chr8_2:14194668-14194687 None:intergenic 20.0%
!! TAGTATAAATCATTACCATA+CGG - chr8_2:14194677-14194696 Msa1235890:three_prime_UTR 20.0%
!!! AGAAGAGAAATGTAATTTTT+AGG + chr8_2:14194946-14194965 None:intergenic 20.0%
!! AATATATGCTTTAATGAATG+AGG + chr8_2:14195053-14195072 None:intergenic 20.0%
!!! TGAAAATTTTGTTCTTTCAA+AGG + chr8_2:14195341-14195360 None:intergenic 20.0%
!!! GTTAAAAATCCAATCTTTTT+TGG - chr8_2:14195878-14195897 Msa1235890:CDS 20.0%
!! TATACAAAACCAAAAAAGAT+TGG + chr8_2:14195890-14195909 None:intergenic 20.0%
!!! TTTTTTGGTTTTGTATACAA+GGG - chr8_2:14195893-14195912 Msa1235890:CDS 20.0%
!! TTGTTTAATGTTTATGTGAT+AGG - chr8_2:14196164-14196183 Msa1235890:intron 20.0%
!! TGTTTAATGTTTATGTGATA+GGG - chr8_2:14196165-14196184 Msa1235890:intron 20.0%
!!! GTAAAAAAGAATGAAGATTT+TGG - chr8_2:14196273-14196292 Msa1235890:intron 20.0%
!! AAAATGTGTTTAATACAATC+TGG + chr8_2:14197288-14197307 None:intergenic 20.0%
!! TTATTAATTGGAATGTTAGT+TGG - chr8_2:14197813-14197832 Msa1235890:five_prime_UTR 20.0%
! AAGCTAGGATATATATTTGA+AGG + chr8_2:14194347-14194366 None:intergenic 25.0%
! ATACATACACAAGAATTGAT+GGG + chr8_2:14194793-14194812 None:intergenic 25.0%
! AATACATACACAAGAATTGA+TGG + chr8_2:14194794-14194813 None:intergenic 25.0%
!!! CATTACATTTTTTTCTCTCT+TGG - chr8_2:14194831-14194850 Msa1235890:intron 25.0%
! TTAATGAATGAGGATGAATT+TGG + chr8_2:14195043-14195062 None:intergenic 25.0%
! CTGAAAAAAGATGTGTTAAT+TGG + chr8_2:14195168-14195187 None:intergenic 25.0%
! TTTGTTCATCAAGTAATGTT+TGG + chr8_2:14195217-14195236 None:intergenic 25.0%
! TTCAACATATGAAAAAACCA+TGG - chr8_2:14195375-14195394 Msa1235890:intron 25.0%
! TCAACATATGAAAAAACCAT+GGG - chr8_2:14195376-14195395 Msa1235890:intron 25.0%
!!! AGAAAGGATTTTGAAGAAAA+GGG + chr8_2:14195844-14195863 None:intergenic 25.0%
!!! AAGAAAGGATTTTGAAGAAA+AGG + chr8_2:14195845-14195864 None:intergenic 25.0%
! ACATGAAAATCTCAAAAGAA+AGG + chr8_2:14195860-14195879 None:intergenic 25.0%
!!! CTTTTTTGGTTTTGTATACA+AGG - chr8_2:14195892-14195911 Msa1235890:CDS 25.0%
!!! AATTGATTTTGTGAAAGAGT+TGG - chr8_2:14196215-14196234 Msa1235890:intron 25.0%
! GATAATTTCATTCCATAACT+AGG + chr8_2:14196321-14196340 None:intergenic 25.0%
! GAAAATTGAGTGCAAAAAAA+AGG - chr8_2:14196428-14196447 Msa1235890:intron 25.0%
! AACATTAGAGAAATAAGAAG+TGG + chr8_2:14196919-14196938 None:intergenic 25.0%
! ATAGAACACACTATTTGAAA+GGG - chr8_2:14196952-14196971 Msa1235890:CDS 25.0%
! TAAATAACGAGCTGTATATA+TGG - chr8_2:14197456-14197475 Msa1235890:intron 25.0%
! AAATAACGAGCTGTATATAT+GGG - chr8_2:14197457-14197476 Msa1235890:intron 25.0%
! ATATTCAGCTACATCAATAA+TGG - chr8_2:14197545-14197564 Msa1235890:exon 25.0%
! GATATATGTAGACAAGAAAA+TGG + chr8_2:14197701-14197720 None:intergenic 25.0%
! TGAGATGTATCATGTTAATT+AGG - chr8_2:14197725-14197744 Msa1235890:five_prime_UTR 25.0%
! GTTTCACTCTGTTTATTAAT+TGG - chr8_2:14197801-14197820 Msa1235890:five_prime_UTR 25.0%
!!! TGTGTTGCTTATTAATTTCT+TGG - chr8_2:14197861-14197880 Msa1235890:five_prime_UTR 25.0%
! CTTTCATGAATTGAGAAATT+AGG - chr8_2:14197886-14197905 Msa1235890:five_prime_UTR 25.0%
AAGGTGGAAACTTCTTAAAT+GGG + chr8_2:14194392-14194411 None:intergenic 30.0%
AAAGGTGGAAACTTCTTAAA+TGG + chr8_2:14194393-14194412 None:intergenic 30.0%
!!! TTTTTGGGGTATTACTCATA+TGG - chr8_2:14194603-14194622 Msa1235890:three_prime_UTR 30.0%
!!! TTTTGGGGTATTACTCATAT+GGG - chr8_2:14194604-14194623 Msa1235890:three_prime_UTR 30.0%
TGTAAAACCATAAGAAGAAG+CGG + chr8_2:14194638-14194657 None:intergenic 30.0%
!! AATGCTTTAGCTTTCAATGA+GGG + chr8_2:14194714-14194733 None:intergenic 30.0%
!! TAATGCTTTAGCTTTCAATG+AGG + chr8_2:14194715-14194734 None:intergenic 30.0%
CCTTTCTTGATTCTACAAAT+AGG + chr8_2:14194864-14194883 None:intergenic 30.0%
CCTATTTGTAGAATCAAGAA+AGG - chr8_2:14194861-14194880 Msa1235890:intron 30.0%
! AATTTGGAGTTTGGTAAGAA+TGG + chr8_2:14195027-14195046 None:intergenic 30.0%
AGAAAAAGTGAAGTAGTGTT+TGG + chr8_2:14195124-14195143 None:intergenic 30.0%
!!! CACATCTTTTTTCAGTTCTT+TGG - chr8_2:14195173-14195192 Msa1235890:intron 30.0%
! ACAAAGTTTGAGATTTGAAG+AGG - chr8_2:14195232-14195251 Msa1235890:intron 30.0%
!! CTTTGAAGCATTTGAAGAAA+TGG + chr8_2:14195296-14195315 None:intergenic 30.0%
TCTTTCAAAGGAAAAAACTG+TGG + chr8_2:14195329-14195348 None:intergenic 30.0%
!!! CTGTTTTTGTTTCTTCTTGT+TGG + chr8_2:14195574-14195593 None:intergenic 30.0%
AACAAGACCAGTTAAGAATA+AGG - chr8_2:14195652-14195671 Msa1235890:intron 30.0%
ACATCTTCCTTATTCTTAAC+TGG + chr8_2:14195662-14195681 None:intergenic 30.0%
AATCTCTTGAAGCACAAAAA+AGG - chr8_2:14196250-14196269 Msa1235890:intron 30.0%
ATCTCTTGAAGCACAAAAAA+GGG - chr8_2:14196251-14196270 Msa1235890:intron 30.0%
AATTTCATTCCATAACTAGG+TGG + chr8_2:14196318-14196337 None:intergenic 30.0%
! TTTACCTCATTTTCTTCACA+AGG + chr8_2:14196345-14196364 None:intergenic 30.0%
TTGTGAAGAAAATGAGGTAA+AGG - chr8_2:14196344-14196363 Msa1235890:intron 30.0%
!!! CTCAATTTTCAAGTTCACAT+GGG + chr8_2:14196418-14196437 None:intergenic 30.0%
!!! ACTCAATTTTCAAGTTCACA+TGG + chr8_2:14196419-14196438 None:intergenic 30.0%
! GATAAAGGTTATTGTTGCTT+TGG - chr8_2:14196461-14196480 Msa1235890:intron 30.0%
!! TTGTTGCTTTGGAAAATCTT+AGG - chr8_2:14196472-14196491 Msa1235890:intron 30.0%
ACTCAAAAGATGTGATGTTT+AGG + chr8_2:14196512-14196531 None:intergenic 30.0%
GAATAATACCTTGAGATTGA+AGG + chr8_2:14196550-14196569 None:intergenic 30.0%
CATAGAACACACTATTTGAA+AGG - chr8_2:14196951-14196970 Msa1235890:CDS 30.0%
TAGAACACACTATTTGAAAG+GGG - chr8_2:14196953-14196972 Msa1235890:CDS 30.0%
TATTTATTCATCTGCACATC+AGG - chr8_2:14197099-14197118 Msa1235890:CDS 30.0%
!! TTCAGCTAGTTTCTAGATTT+TGG - chr8_2:14197254-14197273 Msa1235890:intron 30.0%
AAAGGACAAAGAATCATTGA+AGG - chr8_2:14197632-14197651 Msa1235890:five_prime_UTR 30.0%
AAGGACAAAGAATCATTGAA+GGG - chr8_2:14197633-14197652 Msa1235890:five_prime_UTR 30.0%
TAGCTCACAAAATAGAGATA+GGG - chr8_2:14197748-14197767 Msa1235890:five_prime_UTR 30.0%
AGGTGGAAACTTCTTAAATG+GGG + chr8_2:14194391-14194410 None:intergenic 35.0%
TTGTGGTAAGAAATGAAAGG+TGG + chr8_2:14194408-14194427 None:intergenic 35.0%
GGATTGTGGTAAGAAATGAA+AGG + chr8_2:14194411-14194430 None:intergenic 35.0%
GTTGATCTAAAAGAAGCAGA+GGG + chr8_2:14194432-14194451 None:intergenic 35.0%
TGTTGATCTAAAAGAAGCAG+AGG + chr8_2:14194433-14194452 None:intergenic 35.0%
ACTCTTAAGTCTCACAACAA+AGG + chr8_2:14194498-14194517 None:intergenic 35.0%
GAGACTTAAGAGTTGTTTGT+TGG - chr8_2:14194505-14194524 Msa1235890:three_prime_UTR 35.0%
! TTTGGGGTATTACTCATATG+GGG - chr8_2:14194605-14194624 Msa1235890:three_prime_UTR 35.0%
TCTTATTCCGCTTCTTCTTA+TGG - chr8_2:14194628-14194647 Msa1235890:three_prime_UTR 35.0%
ATCATTACCATACGGAATGT+TGG - chr8_2:14194685-14194704 Msa1235890:three_prime_UTR 35.0%
CATATACACCACTTTGATCA+TGG - chr8_2:14194753-14194772 Msa1235890:CDS 35.0%
TTTGGTAAGAATGGAGAAAG+GGG + chr8_2:14195018-14195037 None:intergenic 35.0%
GTTTGGTAAGAATGGAGAAA+GGG + chr8_2:14195019-14195038 None:intergenic 35.0%
AGTTTGGTAAGAATGGAGAA+AGG + chr8_2:14195020-14195039 None:intergenic 35.0%
! ATGAGGATGAATTTGGAGTT+TGG + chr8_2:14195036-14195055 None:intergenic 35.0%
CATAGCTTACATTCCTAGAA+TGG - chr8_2:14195403-14195422 Msa1235890:intron 35.0%
!! ACTTGTTGTGAATCCATTCT+AGG + chr8_2:14195419-14195438 None:intergenic 35.0%
ATGGATTCACAACAAGTTCA+AGG - chr8_2:14195422-14195441 Msa1235890:intron 35.0%
CTGTGTAACACAAGAAATGT+TGG - chr8_2:14195466-14195485 Msa1235890:intron 35.0%
!! TTGTTGCTTTCTGATTTCAC+TGG + chr8_2:14195503-14195522 None:intergenic 35.0%
TCATGTTCCAAATCTCAACA+AGG - chr8_2:14195599-14195618 Msa1235890:intron 35.0%
TGTTGTTCCTTGTTGAGATT+TGG + chr8_2:14195609-14195628 None:intergenic 35.0%
AATCTCAACAAGGAACAACA+AGG - chr8_2:14195609-14195628 Msa1235890:intron 35.0%
ATCTCAACAAGGAACAACAA+GGG - chr8_2:14195610-14195629 Msa1235890:intron 35.0%
! ATATTGCTGTTGAACGCAAT+AGG - chr8_2:14195702-14195721 Msa1235890:intron 35.0%
TAAGAGACCTAAGAACACTA+AGG + chr8_2:14195748-14195767 None:intergenic 35.0%
TGCCATCTTCATATGTTCAA+AGG - chr8_2:14195768-14195787 Msa1235890:CDS 35.0%
GCCATCTTCATATGTTCAAA+GGG - chr8_2:14195769-14195788 Msa1235890:CDS 35.0%
ACCCTTTGAACATATGAAGA+TGG + chr8_2:14195773-14195792 None:intergenic 35.0%
! TTTGTATACAAGGGCATGTT+TGG - chr8_2:14195902-14195921 Msa1235890:CDS 35.0%
ATCACCTTGTGAAGAAAATG+AGG - chr8_2:14196338-14196357 Msa1235890:intron 35.0%
ATTGAGTGCAAAAAAAAGGC+TGG - chr8_2:14196432-14196451 Msa1235890:intron 35.0%
! AAAGGCTGGTCAATTGATAA+AGG - chr8_2:14196446-14196465 Msa1235890:intron 35.0%
TAAATGTGGTCAACTCACTA+TGG - chr8_2:14196622-14196641 Msa1235890:CDS 35.0%
GATAAACAATGTTGGAACCA+AGG + chr8_2:14196703-14196722 None:intergenic 35.0%
AGCTAATGCTATGAGTATGA+GGG - chr8_2:14196829-14196848 Msa1235890:CDS 35.0%
ACTCTAATGTTGAGTTTGTG+AGG - chr8_2:14197184-14197203 Msa1235890:intron 35.0%
! AGCTCATAGATTAGTTAAGG+TGG - chr8_2:14197224-14197243 Msa1235890:intron 35.0%
ATTGAAGAAGACTGTAAGCT+AGG - chr8_2:14197488-14197507 Msa1235890:intron 35.0%
TAGCTATAAGCCTAAAACCT+TGG - chr8_2:14197584-14197603 Msa1235890:five_prime_UTR 35.0%
AGCTATAAGCCTAAAACCTT+GGG - chr8_2:14197585-14197604 Msa1235890:five_prime_UTR 35.0%
ACAAAGAATCATTGAAGGGA+TGG - chr8_2:14197637-14197656 Msa1235890:five_prime_UTR 35.0%
GTAGCTCACAAAATAGAGAT+AGG - chr8_2:14197747-14197766 Msa1235890:five_prime_UTR 35.0%
TCGACTGCGATTGATATATA+TGG - chr8_2:14197917-14197936 Msa1235890:five_prime_UTR 35.0%
TGTAAGGTCCCAAGCATTAT+TGG + chr8_2:14194267-14194286 None:intergenic 40.0%
! GAAGGGTTGTCTGATTTGTA+AGG + chr8_2:14194283-14194302 None:intergenic 40.0%
TAAAAGAAGCAGAGGGATTG+TGG + chr8_2:14194425-14194444 None:intergenic 40.0%
ATGTAAGCTATGTCTTCCCA+TGG + chr8_2:14195395-14195414 None:intergenic 40.0%
CACTAAGGTGGTCATTCATT+TGG + chr8_2:14195733-14195752 None:intergenic 40.0%
ATGACCACCTTAGTGTTCTT+AGG - chr8_2:14195738-14195757 Msa1235890:intron 40.0%
GGTGACCAAGCATCAATAAT+TGG - chr8_2:14196186-14196205 Msa1235890:intron 40.0%
GACCAAGCATCAATAATTGG+AGG - chr8_2:14196189-14196208 Msa1235890:intron 40.0%
CTCCTCCAATTATTGATGCT+TGG + chr8_2:14196194-14196213 None:intergenic 40.0%
TCATCATCACCACCTAGTTA+TGG - chr8_2:14196306-14196325 Msa1235890:intron 40.0%
ACTCTACTCCTTCAATCTCA+AGG - chr8_2:14196539-14196558 Msa1235890:CDS 40.0%
! CTTGCTATCTAAGCAAAACC+TGG - chr8_2:14196674-14196693 Msa1235890:CDS 40.0%
AAGAGTTGAGTTTGTCCACA+AGG - chr8_2:14196796-14196815 Msa1235890:CDS 40.0%
TTTGTCCACAAGGTATAAGC+TGG - chr8_2:14196806-14196825 Msa1235890:CDS 40.0%
GAGCTAATGCTATGAGTATG+AGG - chr8_2:14196828-14196847 Msa1235890:CDS 40.0%
! GGCAGCTCATAGATTAGTTA+AGG - chr8_2:14197221-14197240 Msa1235890:intron 40.0%
GCTATAAGCCTAAAACCTTG+GGG - chr8_2:14197586-14197605 Msa1235890:five_prime_UTR 40.0%
CTATAAGCCTAAAACCTTGG+GGG - chr8_2:14197587-14197606 Msa1235890:five_prime_UTR 40.0%
TATAAGCCTAAAACCTTGGG+GGG - chr8_2:14197588-14197607 Msa1235890:five_prime_UTR 40.0%
GGGTTGTTGCAGAAGAATAA+AGG - chr8_2:14197614-14197633 Msa1235890:five_prime_UTR 40.0%
AAGAATCATTGAAGGGATGG+TGG - chr8_2:14197640-14197659 Msa1235890:five_prime_UTR 40.0%
AAGGTCCCAAGCATTATTGG+CGG + chr8_2:14194264-14194283 None:intergenic 45.0%
AGAGAGAGAGAGAGAGAGAA+GGG + chr8_2:14194300-14194319 None:intergenic 45.0%
AAGAGAGAGAGAGAGAGAGA+AGG + chr8_2:14194301-14194320 None:intergenic 45.0%
GAGATATGCTAGGCTAAGCT+AGG + chr8_2:14194362-14194381 None:intergenic 45.0%
ACACCACTTTGATCATGGAG+AGG - chr8_2:14194758-14194777 Msa1235890:CDS 45.0%
AAGCCTCTCCATGATCAAAG+TGG + chr8_2:14194764-14194783 None:intergenic 45.0%
TTGATCATGGAGAGGCTTCA+AGG - chr8_2:14194766-14194785 Msa1235890:CDS 45.0%
ACAAGTTCAAGGCGCAACAT+TGG - chr8_2:14195433-14195452 Msa1235890:intron 45.0%
GAGACCTAAGAACACTAAGG+TGG + chr8_2:14195745-14195764 None:intergenic 45.0%
! GGTGGTGATGATGATGTTGA+CGG + chr8_2:14196300-14196319 None:intergenic 45.0%
TAAGCAAAACCTGGCTTCCT+TGG - chr8_2:14196683-14196702 Msa1235890:CDS 45.0%
TAGCTCCAGCTTATACCTTG+TGG + chr8_2:14196814-14196833 None:intergenic 45.0%
TGTGAGGAGACAAGCAAATG+AGG - chr8_2:14197200-14197219 Msa1235890:intron 45.0%
!!! TAATTTTATTTTTTTAAATG+TGG - chr8_2:14196608-14196627 Msa1235890:CDS 5.0%
!!! AAATTTACTAATTTTAAATA+TGG + chr8_2:14196765-14196784 None:intergenic 5.0%
!! TTAAACTAAAATAATTTAAT+CGG - chr8_2:14197057-14197076 Msa1235890:CDS 5.0%
ACACCCCGCCAATAATGCTT+GGG - chr8_2:14194256-14194275 Msa1235890:three_prime_UTR 50.0%
AGGTCCCAAGCATTATTGGC+GGG + chr8_2:14194263-14194282 None:intergenic 50.0%
GTGTGTGTGTGAGAGAGAGT+TGG + chr8_2:14194325-14194344 None:intergenic 50.0%
GGGGTTGCAAGAGATATGCT+AGG + chr8_2:14194372-14194391 None:intergenic 50.0%
AGGGTGACCAACATTCCGTA+TGG + chr8_2:14194695-14194714 None:intergenic 50.0%
ATGTTGGAACCAAGGAAGCC+AGG + chr8_2:14196695-14196714 None:intergenic 50.0%
CCTAAAACCTTGGGGGGAAT+GGG - chr8_2:14197594-14197613 Msa1235890:five_prime_UTR 50.0%
! GAAGGGATGGTGGTAAAGTG+TGG - chr8_2:14197650-14197669 Msa1235890:five_prime_UTR 50.0%
! GATGGTGGTAAAGTGTGGCT+GGG - chr8_2:14197655-14197674 Msa1235890:five_prime_UTR 50.0%
ATGGTGGTAAAGTGTGGCTG+GGG - chr8_2:14197656-14197675 Msa1235890:five_prime_UTR 50.0%
AGCATTATTGGCGGGGTGTG+TGG + chr8_2:14194255-14194274 None:intergenic 55.0%
CACACCCCGCCAATAATGCT+TGG - chr8_2:14194255-14194274 Msa1235890:three_prime_UTR 55.0%
GGTCCCAAGCATTATTGGCG+GGG + chr8_2:14194262-14194281 None:intergenic 55.0%
GCCTAAAACCTTGGGGGGAA+TGG - chr8_2:14197593-14197612 Msa1235890:five_prime_UTR 55.0%
! CCCATTCCCCCCAAGGTTTT+AGG + chr8_2:14197597-14197616 None:intergenic 55.0%
! GGATGGTGGTAAAGTGTGGC+TGG - chr8_2:14197654-14197673 Msa1235890:five_prime_UTR 55.0%
GTAAAGTGTGGCTGGGGTGA+CGG - chr8_2:14197662-14197681 Msa1235890:five_prime_UTR 55.0%
TAAAGTGTGGCTGGGGTGAC+GGG - chr8_2:14197663-14197682 Msa1235890:five_prime_UTR 55.0%
GCAACAACCCATTCCCCCCA+AGG + chr8_2:14197604-14197623 None:intergenic 60.0%
AAAGTGTGGCTGGGGTGACG+GGG - chr8_2:14197664-14197683 Msa1235890:five_prime_UTR 60.0%
!! CTGGGGTGACGGGGAACATA+GGG - chr8_2:14197673-14197692 Msa1235890:five_prime_UTR 60.0%
!! GCTGGGGTGACGGGGAACAT+AGG - chr8_2:14197672-14197691 Msa1235890:five_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 14194238 14198079 14194238 ID=Msa1235890;Name=Msa1235890
chr8_2 mRNA 14194238 14198079 14194238 ID=Msa1235890-mRNA-1;Parent=Msa1235890;Name=Msa1235890-mRNA-1;_AED=0.15;_eAED=0.15;_QI=534|1|1|1|1|1|4|505|365
chr8_2 exon 14194238 14194829 14194238 ID=Msa1235890-mRNA-1:exon:5449;Parent=Msa1235890-mRNA-1
chr8_2 exon 14195757 14196131 14195757 ID=Msa1235890-mRNA-1:exon:5448;Parent=Msa1235890-mRNA-1
chr8_2 exon 14196527 14197129 14196527 ID=Msa1235890-mRNA-1:exon:5447;Parent=Msa1235890-mRNA-1
chr8_2 exon 14197513 14198079 14197513 ID=Msa1235890-mRNA-1:exon:5446;Parent=Msa1235890-mRNA-1
chr8_2 five_prime_UTR 14197546 14198079 14197546 ID=Msa1235890-mRNA-1:five_prime_utr;Parent=Msa1235890-mRNA-1
chr8_2 CDS 14197513 14197545 14197513 ID=Msa1235890-mRNA-1:cds;Parent=Msa1235890-mRNA-1
chr8_2 CDS 14196527 14197129 14196527 ID=Msa1235890-mRNA-1:cds;Parent=Msa1235890-mRNA-1
chr8_2 CDS 14195757 14196131 14195757 ID=Msa1235890-mRNA-1:cds;Parent=Msa1235890-mRNA-1
chr8_2 CDS 14194743 14194829 14194743 ID=Msa1235890-mRNA-1:cds;Parent=Msa1235890-mRNA-1
chr8_2 three_prime_UTR 14194238 14194742 14194238 ID=Msa1235890-mRNA-1:three_prime_utr;Parent=Msa1235890-mRNA-1
Gene Sequence

>Msa1235890

ATGGAGAGGCTTCAAGGACCCATCAATTCTTGTTTCTTTGGTGAAGTGAATTGTTTAGACCAAACATTACTTGATGAACAAAGTTTGAGATTTGAAGAGGAAGAACAATTTCTCATATCAAGTTTAGAAGATAACATGCCATTTCTTCAAATGCTTCAAAGTGTTGATTCTCCACAGTTTTTTCCTTTGAAAGAACAAAATTTTCAAACACTTTTAAGGCTTCAACATATGAAAAAACCATGGGAAGACATAGCTTACATTCCTAGAATGGATTCACAACAAGTTCAAGGCGCAACATTGGAATTTGAAAGCTGTGTAACACAAGAAATGTTGGAGATGCAATCACCAGTGAAATCAGAAAGCAACAAAGTTTCACTTTCAACTTCATGCATTGAGAAATTAAGCTATGAATGTAACCAACAAGAAGAAACAAAAACAGCACAATCATGTTCCAAATCTCAACAAGGAACAACAAGGGAAAAGAGAAAGAGAAAAAGAACAAGACCAGTTAAGAATAAGGAAGATGTTGAGAATCAAAGAATGACACATATTGCTGTTGAACGCAATAGGAGACGCCAAATGAATGACCACCTTAGTGTTCTTAGGTCTCTTATGCCATCTTCATATGTTCAAAGGGGTGACCAAGCATCAATAATTGGAGGAGCAATTGATTTTGTGAAAGAGTTGGAACAATTGCTTGAATCTCTTGAAGCACAAAAAAGGGTAAAAAAGAATGAAGATTTTGGGCCGTCAACATCATCATCACCACCTAGTTATGGAATGAAATTATCACCTTGTGAAGAAAATGAGGTAAAGGCAGAAAACAAATCAGAAGCAGCAGATATAAAAGTAACATTGATTCAAACCCATGTGAACTTGAAAATTGAGTGCAAAAAAAAGGCTGGTCAATTGATAAAGGTTATTGTTGCTTTGGAAAATCTTAGGCTAACTATTCTTCACCTAAACATCACATCTTTTGAGTCTACTGTACTCTACTCCTTCAATCTCAAGATTGAAGAAGACTGTAAGCTAGGCACAGCAAATGACATAGCAGAAGCAGTTCATCAAATATTCAGCTACATCAATAATGGTAGCTAA

Protein sequence

>Msa1235890

MERLQGPINSCFFGEVNCLDQTLLDEQSLRFEEEEQFLISSLEDNMPFLQMLQSVDSPQFFPLKEQNFQTLLRLQHMKKPWEDIAYIPRMDSQQVQGATLEFESCVTQEMLEMQSPVKSESNKVSLSTSCIEKLSYECNQQEETKTAQSCSKSQQGTTREKRKRKRTRPVKNKEDVENQRMTHIAVERNRRRQMNDHLSVLRSLMPSSYVQRGDQASIIGGAIDFVKELEQLLESLEAQKRVKKNEDFGPSTSSSPPSYGMKLSPCEENEVKAENKSEAADIKVTLIQTHVNLKIECKKKAGQLIKVIVALENLRLTILHLNITSFESTVLYSFNLKIEEDCKLGTANDIAEAVHQIFSYINNGS*