AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1134400

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1134400 MtrunA17_Chr7g0214731 98.742 636 8 0 1 636 1 636 0.0 1306
Msa1134400 MtrunA17_Chr7g0241741 41.997 581 311 12 38 612 1 561 1.60e-147 439
Msa1134400 MtrunA17_Chr4g0005901 41.812 574 310 11 44 612 17 571 2.37e-147 439
Msa1134400 MtrunA17_Chr3g0104011 41.155 554 308 7 63 612 24 563 4.94e-142 425
Msa1134400 MtrunA17_Chr8g0375311 39.196 597 335 10 22 612 8 582 1.23e-140 422
Msa1134400 MtrunA17_Chr8g0375291 39.931 581 325 9 30 606 16 576 3.67e-137 413
Msa1134400 MtrunA17_Chr3g0142101 37.801 582 337 8 51 630 26 584 8.35e-134 404
Msa1134400 MtrunA17_Chr3g0142091 37.997 579 336 7 51 627 17 574 2.60e-129 392
Msa1134400 MtrunA17_Chr8g0375341 38.267 554 327 5 62 612 41 582 1.23e-124 380
Msa1134400 MtrunA17_Chr8g0375321 39.130 552 321 6 62 610 38 577 2.24e-124 380
Msa1134400 MtrunA17_Chr8g0375351 37.871 573 337 7 42 610 23 580 2.35e-124 380
Msa1134400 MtrunA17_Chr7g0271221 37.251 553 323 7 63 614 19 548 9.98e-122 373
Msa1134400 MtrunA17_Chr8g0375331 39.241 553 319 7 62 610 25 564 1.69e-121 372
Msa1134400 MtrunA17_Chr7g0261881 36.548 591 356 11 44 633 12 584 7.02e-121 371
Msa1134400 MtrunA17_Chr7g0261811 35.966 595 366 9 44 637 12 592 1.13e-120 371
Msa1134400 MtrunA17_Chr7g0261791 36.707 583 353 9 31 611 1 569 1.15e-119 369
Msa1134400 MtrunA17_Chr7g0261771 35.216 602 374 11 34 633 5 592 1.49e-119 368
Msa1134400 MtrunA17_Chr1g0187241 36.063 574 348 10 44 614 11 568 3.73e-119 367
Msa1134400 MtrunA17_Chr8g0375361 36.707 583 351 8 34 612 13 581 1.22e-118 365
Msa1134400 MtrunA17_Chr1g0193391 35.921 554 331 7 63 615 19 549 1.23e-116 361
Msa1134400 MtrunA17_Chr3g0114501 36.426 582 346 12 38 614 1 563 1.55e-115 357
Msa1134400 MtrunA17_Chr5g0399061 35.387 568 339 9 62 618 28 578 7.21e-115 355
Msa1134400 MtrunA17_Chr7g0255621 35.582 593 360 10 54 637 10 589 1.11e-114 355
Msa1134400 MtrunA17_Chr5g0422881 35.751 579 352 10 63 634 22 587 2.64e-114 354
Msa1134400 MtrunA17_Chr3g0133341 37.004 554 328 10 63 613 16 551 2.72e-112 348
Msa1134400 MtrunA17_Chr5g0399071 36.915 577 339 7 60 627 24 584 8.38e-112 348
Msa1134400 MtrunA17_Chr5g0439381 36.806 576 330 8 45 615 13 559 3.02e-111 346
Msa1134400 MtrunA17_Chr7g0261851 37.696 573 334 11 44 611 13 567 2.26e-110 344
Msa1134400 MtrunA17_Chr4g0056431 36.745 596 349 11 48 626 2 586 2.33e-110 344
Msa1134400 MtrunA17_Chr1g0166711 35.929 565 347 8 51 614 16 566 4.14e-110 343
Msa1134400 MtrunA17_Chr7g0214461 35.752 565 335 9 52 610 70 612 6.74e-110 344
Msa1134400 MtrunA17_Chr3g0112611 35.009 557 338 11 62 613 33 570 1.24e-109 342
Msa1134400 MtrunA17_Chr2g0284701 34.397 564 351 9 63 614 34 590 2.90e-109 342
Msa1134400 MtrunA17_Chr7g0240381 34.458 563 339 10 54 612 22 558 5.82e-109 340
Msa1134400 MtrunA17_Chr1g0213711 36.331 556 325 9 62 610 22 555 1.19e-108 339
Msa1134400 MtrunA17_Chr5g0415791 36.926 566 335 9 54 612 27 577 6.76e-108 338
Msa1134400 MtrunA17_Chr3g0112671 32.699 578 354 10 62 637 34 578 8.09e-108 337
Msa1134400 MtrunA17_Chr1g0166741 34.783 552 340 8 40 591 8 539 1.92e-107 336
Msa1134400 MtrunA17_Chr7g0255601 34.712 556 345 8 63 612 29 572 3.58e-106 334
Msa1134400 MtrunA17_Chr4g0063591 37.123 563 320 10 60 612 21 559 4.93e-106 332
Msa1134400 MtrunA17_Chr7g0218851 36.445 557 323 11 63 610 48 582 9.79e-106 332
Msa1134400 MtrunA17_Chr1g0166791 33.566 572 365 9 44 614 9 566 2.64e-105 331
Msa1134400 MtrunA17_Chr7g0217461 35.929 565 348 6 62 621 25 580 5.89e-104 327
Msa1134400 MtrunA17_Chr4g0008651 33.156 564 353 9 54 613 27 570 1.09e-103 327
Msa1134400 MtrunA17_Chr8g0353031 35.079 573 327 9 62 621 19 559 2.72e-102 322
Msa1134400 MtrunA17_Chr4g0059981 34.896 576 343 11 66 627 36 593 2.19e-101 321
Msa1134400 MtrunA17_Chr1g0166771 34.884 516 318 6 80 595 10 507 6.28e-101 318
Msa1134400 MtrunA17_Chr7g0255611 30.706 609 396 10 35 630 4 599 5.16e-99 315
Msa1134400 MtrunA17_Chr5g0400371 33.813 556 349 8 62 610 113 656 1.52e-98 315
Msa1134400 MtrunA17_Chr4g0059971 34.215 567 332 13 66 612 39 584 2.18e-98 313
Msa1134400 MtrunA17_Chr8g0362711 35.106 564 334 9 63 612 26 571 9.02e-98 311
Msa1134400 MtrunA17_Chr4g0069581 35.262 553 330 12 90 637 15 544 2.44e-97 309
Msa1134400 MtrunA17_Chr4g0011471 33.755 554 339 10 68 610 21 557 2.70e-97 309
Msa1134400 MtrunA17_Chr4g0054891 32.727 605 367 12 16 610 75 649 3.28e-97 312
Msa1134400 MtrunA17_Chr8g0362781 31.495 562 363 8 63 613 32 582 1.10e-96 308
Msa1134400 MtrunA17_Chr2g0276751 33.451 568 345 10 48 612 26 563 8.38e-96 306
Msa1134400 MtrunA17_Chr7g0261661 37.527 461 271 8 177 631 26 475 1.09e-95 303
Msa1134400 MtrunA17_Chr8g0379971 35.121 578 343 10 63 614 22 593 1.18e-95 306
Msa1134400 MtrunA17_Chr4g0014781 33.034 557 330 11 62 611 30 550 6.54e-94 300
Msa1134400 MtrunA17_Chr5g0415961 34.338 597 352 12 31 612 1 572 1.47e-93 300
Msa1134400 MtrunA17_Chr4g0059991 32.040 593 362 12 66 637 27 599 7.92e-92 296
Msa1134400 MtrunA17_Chr4g0014791 32.918 562 332 10 62 616 30 553 3.48e-91 293
Msa1134400 MtrunA17_Chr4g0014871 32.321 560 341 10 62 616 31 557 4.68e-91 293
Msa1134400 MtrunA17_Chr8g0379991 35.529 577 317 13 82 614 1 566 1.83e-90 291
Msa1134400 MtrunA17_Chr8g0390331 35.752 565 317 11 63 609 17 553 3.82e-90 291
Msa1134400 MtrunA17_Chr4g0014841 31.362 558 346 9 62 616 30 553 3.34e-89 288
Msa1134400 MtrunA17_Chr2g0331481 33.220 587 348 15 65 634 29 588 1.85e-88 288
Msa1134400 MtrunA17_Chr4g0014801 31.835 556 336 11 63 611 31 550 2.82e-88 285
Msa1134400 MtrunA17_Chr2g0331471 32.993 588 352 14 63 634 90 651 3.93e-88 289
Msa1134400 MtrunA17_Chr7g0261751 34.483 493 275 9 34 488 5 487 2.65e-87 282
Msa1134400 MtrunA17_Chr1g0157601 33.631 559 347 9 58 609 12 553 3.15e-87 283
Msa1134400 MtrunA17_Chr3g0077151 31.579 570 337 11 51 612 19 543 9.56e-86 278
Msa1134400 MtrunA17_Chr8g0362801 36.062 452 274 7 168 612 18 461 7.32e-83 269
Msa1134400 MtrunA17_Chr2g0331521 31.889 577 360 14 46 609 7 563 1.66e-82 271
Msa1134400 MtrunA17_Chr4g0003761 32.101 595 353 14 61 632 30 596 1.41e-81 269
Msa1134400 MtrunA17_Chr1g0166731 34.423 459 291 5 157 614 14 463 2.88e-81 264
Msa1134400 MtrunA17_Chr1g0147631 34.028 576 347 11 63 626 27 581 5.30e-81 267
Msa1134400 MtrunA17_Chr4g0011041 28.621 573 376 11 51 610 27 579 1.48e-80 266
Msa1134400 MtrunA17_Chr4g0060001 31.579 570 358 14 63 620 31 580 2.08e-80 266
Msa1134400 MtrunA17_Chr1g0157611 32.852 554 344 10 65 609 20 554 2.51e-79 262
Msa1134400 MtrunA17_Chr3g0082631 33.632 446 274 9 184 615 25 462 1.96e-78 257
Msa1134400 MtrunA17_Chr2g0331461 32.297 579 344 15 65 621 29 581 6.63e-76 254
Msa1134400 MtrunA17_Chr2g0331511 31.369 577 353 15 63 621 23 574 8.65e-76 254
Msa1134400 MtrunA17_Chr1g0157621 33.022 536 332 12 82 609 1 517 1.10e-75 252
Msa1134400 MtrunA17_Chr7g0261731 38.418 354 207 7 34 386 5 348 1.64e-73 240
Msa1134400 MtrunA17_Chr1g0177591 30.590 559 338 15 63 609 44 564 6.00e-73 245
Msa1134400 MtrunA17_Chr4g0014861 32.184 435 277 7 185 616 13 432 1.02e-72 241
Msa1134400 MtrunA17_Chr5g0415841 29.741 464 305 8 168 623 18 468 5.41e-68 229
Msa1134400 MtrunA17_Chr7g0240271 27.719 570 387 10 50 609 13 567 6.89e-66 226
Msa1134400 MtrunA17_Chr3g0142111 38.926 298 174 3 51 348 37 326 1.55e-64 216
Msa1134400 MtrunA17_Chr7g0240281 28.647 569 379 10 51 607 14 567 5.30e-64 221
Msa1134400 MtrunA17_Chr1g0177611 31.797 434 268 8 184 609 22 435 5.62e-64 218
Msa1134400 MtrunA17_Chr1g0177631 32.028 434 267 8 184 609 22 435 3.22e-62 213
Msa1134400 MtrunA17_Chr3g0142121 38.194 288 161 5 342 627 11 283 3.62e-60 202
Msa1134400 MtrunA17_Chr7g0240181 28.153 444 302 7 175 609 21 456 6.24e-56 197
Msa1134400 MtrunA17_Chr7g0240211 28.153 444 302 7 175 609 21 456 6.50e-56 197
Msa1134400 MtrunA17_Chr7g0235521 28.153 444 302 7 175 609 21 456 4.54e-55 194
Msa1134400 MtrunA17_Chr7g0240131 28.153 444 302 7 175 609 21 456 7.70e-55 194
Msa1134400 MtrunA17_Chr7g0234151 31.163 430 252 10 185 609 28 418 9.33e-54 189
Msa1134400 MtrunA17_Chr7g0234381 31.860 430 249 10 185 609 28 418 9.72e-54 189
Msa1134400 MtrunA17_Chr7g0234181 31.163 430 252 10 185 609 23 413 2.65e-52 185
Msa1134400 MtrunA17_Chr7g0240151 27.928 444 285 8 175 609 21 438 3.95e-52 186
Msa1134400 MtrunA17_Chr2g0325951 26.930 557 372 10 62 612 20 547 2.37e-51 186
Msa1134400 MtrunA17_Chr3g0112631 34.657 277 171 6 341 613 3 273 5.42e-51 178
Msa1134400 MtrunA17_Chr2g0325961 28.322 572 346 16 62 612 20 548 9.68e-51 184
Msa1134400 MtrunA17_Chr4g0060071 34.333 300 184 6 316 613 11 299 1.19e-50 177
Msa1134400 MtrunA17_Chr2g0326211 24.783 577 371 13 56 612 14 547 1.66e-49 181
Msa1134400 MtrunA17_Chr6g0451841 26.095 548 359 11 80 614 24 538 7.83e-46 170
Msa1134400 MtrunA17_Chr7g0261721 32.394 213 140 3 413 625 6 214 5.92e-32 124
Msa1134400 MtrunA17_Chr1g0147591 35.000 200 111 5 191 380 5 195 1.27e-29 116
Msa1134400 MtrunA17_Chr3g0112651 32.487 197 125 4 154 350 23 211 1.13e-27 111
Msa1134400 MtrunA17_Chr7g0261831 35.714 154 92 4 295 446 1 149 2.90e-18 84.0
Msa1134400 MtrunA17_Chr4g0060061 32.231 121 82 0 178 298 8 128 1.17e-16 77.0
Msa1134400 MtrunA17_Chr1g0166721 41.667 96 55 1 51 146 16 110 2.64e-16 76.6
Msa1134400 MtrunA17_Chr3g0112661 37.647 85 53 0 62 146 32 116 1.29e-14 71.2
Msa1134400 MtrunA17_Chr7g0261671 38.596 114 67 3 34 146 6 117 1.51e-14 70.5
Msa1134400 MtrunA17_Chr2g0326221 25.688 218 128 5 396 612 39 223 1.63e-14 73.2
Msa1134400 MtrunA17_Chr4g0014851 38.824 85 52 0 62 146 31 115 4.85e-14 70.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1134400 AT5G13400.1 78.303 613 130 2 1 612 1 611 0.0 1010
Msa1134400 AT3G54140.1 40.140 573 323 9 44 612 7 563 6.67e-145 433
Msa1134400 AT3G54140.2 40.140 573 323 9 44 612 7 563 6.67e-145 433
Msa1134400 AT5G01180.2 41.012 573 317 9 44 612 8 563 5.30e-144 431
Msa1134400 AT5G01180.3 41.012 573 317 9 44 612 8 563 5.30e-144 431
Msa1134400 AT5G01180.1 41.012 573 317 9 44 612 8 563 5.30e-144 431
Msa1134400 AT2G02040.1 41.516 554 307 7 63 612 41 581 1.47e-143 430
Msa1134400 AT1G62200.1 40.418 574 321 7 32 602 22 577 9.98e-138 415
Msa1134400 AT1G62200.2 38.640 603 320 8 32 602 22 606 5.25e-132 401
Msa1134400 AT1G62200.3 38.640 603 320 8 32 602 36 620 8.65e-132 401
Msa1134400 AT2G02020.1 37.833 563 297 9 51 611 31 542 2.94e-120 369
Msa1134400 AT2G26690.1 37.456 574 325 13 60 623 21 570 1.55e-112 349
Msa1134400 AT2G37900.1 34.555 573 337 11 45 613 29 567 2.19e-112 349
Msa1134400 AT3G53960.1 35.060 579 334 14 45 613 28 574 2.27e-111 347
Msa1134400 AT2G40460.1 35.233 579 351 10 38 614 1 557 3.62e-111 346
Msa1134400 AT5G46040.1 35.017 594 367 11 40 630 6 583 5.37e-111 346
Msa1134400 AT3G21670.1 36.767 563 320 6 60 614 26 560 2.05e-110 344
Msa1134400 AT1G68570.1 36.250 560 341 7 65 618 25 574 7.94e-110 343
Msa1134400 AT5G46050.1 35.091 550 341 9 40 588 6 540 3.58e-109 341
Msa1134400 AT3G54450.1 33.394 554 338 6 65 612 14 542 1.54e-106 333
Msa1134400 AT1G12110.1 36.063 574 345 9 60 626 24 582 1.56e-106 334
Msa1134400 AT1G68570.2 35.818 550 337 7 75 618 5 544 3.33e-106 333
Msa1134400 AT2G26690.2 36.494 559 321 12 75 623 3 537 2.60e-105 330
Msa1134400 AT1G69870.1 33.997 603 373 12 44 638 33 618 2.73e-105 332
Msa1134400 AT1G32450.1 34.375 608 352 16 41 626 17 599 1.17e-102 325
Msa1134400 AT2G26690.3 36.679 548 313 13 86 623 2 525 4.83e-102 321
Msa1134400 AT2G02020.2 35.169 563 291 10 51 611 31 521 1.60e-101 319
Msa1134400 AT1G69850.1 35.140 572 334 9 63 613 25 580 6.06e-100 317
Msa1134400 AT1G59740.1 34.495 545 340 6 62 604 40 569 7.19e-100 317
Msa1134400 AT2G37900.2 35.236 508 300 10 110 613 6 488 6.85e-99 311
Msa1134400 AT4G21680.1 34.821 560 341 8 62 611 27 572 1.24e-98 314
Msa1134400 AT1G33440.1 34.483 580 353 11 62 634 37 596 5.81e-98 312
Msa1134400 AT5G19640.1 34.712 556 321 12 64 610 60 582 1.81e-96 308
Msa1134400 AT1G27040.2 33.575 551 347 7 63 611 23 556 2.68e-91 294
Msa1134400 AT1G27040.1 33.575 551 347 7 63 611 27 560 2.92e-91 294
Msa1134400 AT1G27080.1 31.570 567 359 9 53 612 4 548 8.42e-91 293
Msa1134400 AT1G18880.1 31.004 558 361 7 66 612 22 566 2.07e-88 287
Msa1134400 AT1G52190.1 33.805 565 345 11 59 609 17 566 2.51e-88 287
Msa1134400 AT1G27040.3 33.520 537 338 7 77 611 9 528 5.65e-88 284
Msa1134400 AT3G47960.1 32.918 562 345 10 66 612 64 608 2.86e-87 285
Msa1134400 AT5G62680.1 31.353 606 388 11 21 612 1 592 3.82e-87 284
Msa1134400 AT5G62730.1 31.145 594 360 11 33 615 33 588 1.01e-86 282
Msa1134400 AT3G16180.1 33.214 557 344 10 65 609 25 565 9.59e-86 280
Msa1134400 AT5G46050.2 34.633 436 275 6 154 588 2 428 1.91e-85 275
Msa1134400 AT5G62730.2 31.843 559 339 10 68 615 2 529 3.37e-85 277
Msa1134400 AT1G72120.1 33.986 562 323 13 62 612 28 552 3.97e-84 275
Msa1134400 AT1G22570.1 31.429 560 347 10 62 612 29 560 4.75e-83 272
Msa1134400 AT1G72140.1 30.660 561 340 9 62 613 33 553 9.49e-82 268
Msa1134400 AT1G22550.1 32.799 561 337 12 62 612 29 559 1.70e-81 268
Msa1134400 AT1G72125.1 31.851 562 347 11 62 616 28 560 3.76e-81 267
Msa1134400 AT1G27080.2 31.418 522 329 9 98 612 7 506 1.61e-80 265
Msa1134400 AT1G22540.1 32.123 551 341 13 62 609 29 549 8.69e-78 258
Msa1134400 AT3G25260.1 30.309 551 324 11 63 609 21 515 2.41e-77 256
Msa1134400 AT1G69860.1 31.359 574 354 10 52 612 3 549 3.36e-77 256
Msa1134400 AT1G22570.2 30.657 548 343 10 74 612 4 523 5.03e-77 255
Msa1134400 AT1G72130.1 30.319 564 332 13 64 617 26 538 2.78e-75 251
Msa1134400 AT5G28470.2 29.084 557 365 12 63 609 17 553 1.24e-71 242
Msa1134400 AT5G28470.1 29.084 557 363 13 63 609 17 551 3.55e-70 238
Msa1134400 AT3G25280.1 29.273 550 337 12 63 609 21 521 1.46e-68 232
Msa1134400 AT3G45650.1 28.288 555 360 12 63 612 22 543 2.76e-65 224
Msa1134400 AT3G45710.1 28.055 581 370 15 56 623 14 559 5.68e-65 224
Msa1134400 AT3G45700.1 28.746 574 363 14 62 629 15 548 1.66e-62 217
Msa1134400 AT3G45680.1 29.145 573 361 15 62 625 19 555 4.84e-62 216
Msa1134400 AT3G45660.1 27.915 566 366 14 63 621 21 551 5.30e-62 216
Msa1134400 AT3G45660.3 27.915 566 366 14 63 621 21 551 5.30e-62 216
Msa1134400 AT3G45660.2 27.915 566 366 14 63 621 42 572 1.05e-61 215
Msa1134400 AT3G45650.2 27.022 581 360 13 63 612 22 569 7.57e-60 211
Msa1134400 AT1G72130.2 29.345 443 267 10 185 617 14 420 8.52e-58 201
Msa1134400 AT1G72130.3 29.345 443 267 10 185 617 14 420 8.52e-58 201
Msa1134400 AT3G45720.1 28.571 560 352 15 63 612 19 540 1.24e-55 198
Msa1134400 AT5G14940.1 25.175 572 341 12 80 615 24 544 2.06e-55 197
Msa1134400 AT3G01350.1 25.829 573 358 11 80 621 24 560 6.41e-54 194
Msa1134400 AT3G45690.1 27.207 555 328 15 62 612 17 499 2.28e-51 186
Msa1134400 AT5G11570.1 26.199 542 309 13 72 609 22 476 3.43e-44 165
Msa1134400 AT2G38100.2 25.472 530 321 17 99 609 10 484 1.47e-28 120
Msa1134400 AT2G38100.1 25.411 547 333 18 82 609 10 500 2.07e-28 120
Msa1134400 AT2G38100.3 25.411 547 333 18 82 609 16 506 2.84e-28 119

Find 114 sgRNAs with CRISPR-Local

Find 199 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTACCTAAGTGAGTGTTTA+AGG 0.112269 7_4:+871682 None:intergenic
TGCCAAATTTAAGTGCTTAT+TGG 0.163181 7_4:-871406 Msa1134400:CDS
GGTCTATGTTCAAATGAAAT+TGG 0.164056 7_4:-872507 Msa1134400:CDS
ATTGCTGCCTTCTTTATATT+TGG 0.176863 7_4:-874325 Msa1134400:intron
GCAGAAAGAATGGCTTATTT+TGG 0.182047 7_4:-874018 Msa1134400:CDS
TTGATTCAATATTGCTTAAT+TGG 0.195137 7_4:-871380 Msa1134400:CDS
TTGGGTTGGGGTTCTGCTTT+TGG 0.200637 7_4:-872488 Msa1134400:CDS
TTGCTCACACTGATGATTTC+AGG 0.202605 7_4:-872250 Msa1134400:intron
AACCAATAAGCACTTAAATT+TGG 0.204333 7_4:+871404 None:intergenic
TTCTAGCTAGTTTAAATATA+TGG 0.210365 7_4:-870985 Msa1134400:exon
AGACCATGTGTATCTTCTTT+TGG 0.243431 7_4:-872641 Msa1134400:CDS
GTCCCTTGTTGAGGTGCTTC+TGG 0.246454 7_4:+874502 None:intergenic
TCACAAGCTTCTTCTGTTCT+TGG 0.246695 7_4:-873904 Msa1134400:CDS
CAAAGAATTGGAATTGGTTT+AGG 0.253602 7_4:-871527 Msa1134400:CDS
AATGCAGTCAATAACTTCTT+AGG 0.277380 7_4:-873931 Msa1134400:CDS
GCTGCTTTAGCTGGTGGATT+AGG 0.281571 7_4:-871269 Msa1134400:CDS
AAATATACCCGTCACTTTAG+AGG 0.282080 7_4:+870933 None:intergenic
AGGTTCCATTGACTTGGATT+AGG 0.295324 7_4:+871830 None:intergenic
ATGCATACCTTGGACGTTAC+TGG 0.310134 7_4:-873867 Msa1134400:CDS
ATTGAGGATCTTTCTAAAAC+TGG 0.317548 7_4:-874355 Msa1134400:CDS
AAAGTGACGGGTATATTTAA+TGG 0.321249 7_4:-870928 Msa1134400:three_prime_UTR
TCTACACCTGTTAATATTCA+TGG 0.321471 7_4:-874385 Msa1134400:CDS
TGGTAGAAGATCTGCTATAA+AGG 0.325332 7_4:-872285 Msa1134400:CDS
GAGGATAGAAGGATGGCTTT+AGG 0.330296 7_4:-874427 Msa1134400:CDS
GACCAATTATCACTTCTATT+AGG 0.331157 7_4:-873056 Msa1134400:CDS
TTCTATCTTTCTGTGACAAT+TGG 0.332881 7_4:-872554 Msa1134400:CDS
TTCCTAATAGAAGTGATAAT+TGG 0.337644 7_4:+873054 None:intergenic
TGAAAAGCGGTACAAAAGTT+TGG 0.355525 7_4:+871588 None:intergenic
TGTTCAAATGAAATTGGGTT+GGG 0.357013 7_4:-872501 Msa1134400:CDS
GGTTCCATTGACTTGGATTA+GGG 0.361442 7_4:+871831 None:intergenic
GTGTGTTAGAGTTAGTAAAA+TGG 0.369659 7_4:-874545 Msa1134400:exon
GCATCGCAGCTTCAAAGAAT+TGG 0.376023 7_4:-871539 Msa1134400:CDS
CAAGCTTCTTCTGTTCTTGG+TGG 0.377343 7_4:-873901 Msa1134400:CDS
AAAACCGGCATGCATGTAAC+TGG 0.377966 7_4:+871650 None:intergenic
AGGATAGAAGGATGGCTTTA+GGG 0.379409 7_4:-874426 Msa1134400:CDS
CAGATAAAAGACAAGAATCT+TGG 0.379936 7_4:-871193 Msa1134400:CDS
CAGCTTCAAAGAATTGGAAT+TGG 0.381580 7_4:-871533 Msa1134400:CDS
TCTGCTTATGCTGCTTTAGC+TGG 0.393452 7_4:-871278 Msa1134400:CDS
TCATTGAGTCTGAGGATAGA+AGG 0.397462 7_4:-874438 Msa1134400:CDS
GTTCTATACATAACAGCATT+TGG 0.401544 7_4:-872987 Msa1134400:CDS
CGAAAGAGAAAAGAATCATT+TGG 0.406039 7_4:-872341 Msa1134400:CDS
ATGATTGTGCAAGCTGGAAT+TGG 0.416463 7_4:+871758 None:intergenic
GTTGGGTTGTATGAGGTTCC+TGG 0.417358 7_4:-872305 Msa1134400:CDS
TAAGAAGTTATTGACTGCAT+TGG 0.421169 7_4:+873933 None:intergenic
TGTTTAAGGTATATGCTTGT+TGG 0.437145 7_4:+871696 None:intergenic
GACTGAGAGAGTTAGAAATT+CGG 0.450049 7_4:+871718 None:intergenic
ACTTGAGCGACTCGTGTAAG+AGG 0.451347 7_4:+872380 None:intergenic
TACACGAGTCGCTCAAGTAT+TGG 0.457764 7_4:-872375 Msa1134400:CDS
ATCTTTCTAAAACTGGTGGT+TGG 0.458191 7_4:-874348 Msa1134400:CDS
ATGCATCACATAAAACATAA+AGG 0.459047 7_4:+873975 None:intergenic
TTGACAATTTGACAAACAAT+GGG 0.461413 7_4:-871022 Msa1134400:CDS
TTTGGTAATAGTGAAGTTGT+TGG 0.461645 7_4:-872323 Msa1134400:CDS
CTTGACAATTTGACAAACAA+TGG 0.461831 7_4:-871023 Msa1134400:CDS
GTCTATGTTCAAATGAAATT+GGG 0.468317 7_4:-872506 Msa1134400:CDS
AAATGAAATGGCAGAAAGAA+TGG 0.471770 7_4:-874028 Msa1134400:CDS
TAAGCACTTAAATTTGGCAT+TGG 0.472247 7_4:+871410 None:intergenic
CCTGATGCTATGAAAAGTAT+TGG 0.473797 7_4:-871302 Msa1134400:CDS
GGTAGAAGATCTGCTATAAA+GGG 0.480231 7_4:-872284 Msa1134400:CDS
GTACAAAGGTTCCATTGACT+TGG 0.480579 7_4:+871824 None:intergenic
TATATGGAGTTATATATGTA+AGG 0.483156 7_4:-870969 Msa1134400:three_prime_UTR
GGTTCATTGGCAATAGCAAT+GGG 0.486016 7_4:-872467 Msa1134400:CDS
TTTCTTGCTGATGCATACCT+TGG 0.487967 7_4:-873877 Msa1134400:CDS
TGAAGTTGTTGGGTTGTATG+AGG 0.491613 7_4:-872312 Msa1134400:CDS
TGGTTCATTGGCAATAGCAA+TGG 0.496742 7_4:-872468 Msa1134400:CDS
TTGTATAGACATAGGTTGCC+AGG 0.499116 7_4:-872410 Msa1134400:CDS
GCTTATGCTGCTTTAGCTGG+TGG 0.504449 7_4:-871275 Msa1134400:CDS
GTACACCTTTGTATAGACAT+AGG 0.505286 7_4:-872418 Msa1134400:CDS
TTGGTAATAGTGAAGTTGTT+GGG 0.508569 7_4:-872322 Msa1134400:CDS
AGAAGGATGGCTTTAGGGCG+TGG 0.510086 7_4:-874421 Msa1134400:CDS
ATGAGGAATACACTTAGGCC+TGG 0.513514 7_4:+871626 None:intergenic
TTTCTGCTCATTGAAGTGCA+TGG 0.520712 7_4:+874478 None:intergenic
TAGAGGTATGTCATTTGCCA+TGG 0.522678 7_4:+873014 None:intergenic
GCATTGGATGAACTTGCAAA+AGG 0.523734 7_4:+873949 None:intergenic
GTTCAAATGAAATTGGGTTG+GGG 0.526250 7_4:-872500 Msa1134400:CDS
TTAAGCATGATTGTGCAAGC+TGG 0.527229 7_4:+871752 None:intergenic
ATGTTCAAATGAAATTGGGT+TGG 0.527545 7_4:-872502 Msa1134400:CDS
ATAACAGCATTTGGAGCTGC+AGG 0.530231 7_4:-872978 Msa1134400:intron
ATGGCCCTAATCCAAGTCAA+TGG 0.532912 7_4:-871835 Msa1134400:CDS
CTACTTGTGTTACTGTACAA+AGG 0.543543 7_4:+871810 None:intergenic
ATACATACCAAATATAAAGA+AGG 0.545633 7_4:+874318 None:intergenic
CAGCACATAGATACAAATAC+AGG 0.546985 7_4:-871079 Msa1134400:CDS
TATTAGTCCTCTAAAGTGAC+GGG 0.548328 7_4:-870940 Msa1134400:three_prime_UTR
TATACCTTAAACACTCACTT+AGG 0.555464 7_4:-871686 Msa1134400:CDS
AGTGTTGTTAAATCTGCCAC+TGG 0.556705 7_4:-871221 Msa1134400:CDS
GCTCTACAATTGAAACAAGA+TGG 0.565645 7_4:-871854 Msa1134400:CDS
CTAATATGAGGAATACACTT+AGG 0.566459 7_4:+871621 None:intergenic
GGTTACTGCAGGAAATGAAA+TGG 0.566480 7_4:-874040 Msa1134400:intron
GTATTAGTCCTCTAAAGTGA+CGG 0.570581 7_4:-870941 Msa1134400:three_prime_UTR
GGTAATAGAGAGCTAATATG+AGG 0.570895 7_4:+871609 None:intergenic
TCAATGAGCAGAAAGAAACT+TGG 0.574485 7_4:-874469 Msa1134400:CDS
ACTTCCAGTTACATGCATGC+CGG 0.579964 7_4:-871654 Msa1134400:CDS
TTTATAGCAGATCTTCTACC+AGG 0.580725 7_4:+872287 None:intergenic
TTAGGGCGTGGTTATACAAG+AGG 0.582655 7_4:-874409 Msa1134400:CDS
GACACAGCATGTTTATGAGA+TGG 0.586132 7_4:-871057 Msa1134400:CDS
GAGGATCTTTCTAAAACTGG+TGG 0.590113 7_4:-874352 Msa1134400:CDS
TATTCATGGAAAATCCATTG+AGG 0.592324 7_4:-874371 Msa1134400:CDS
GTGCATGGTGTCCCTTGTTG+AGG 0.594959 7_4:+874493 None:intergenic
CGCATCACTGGTCATCCGCA+TGG 0.596174 7_4:-871563 Msa1134400:CDS
CCAGTGATGCGTTTGAAAAG+CGG 0.602166 7_4:+871575 None:intergenic
CGTGTAAGAGGACTTCCACC+TGG 0.612686 7_4:+872392 None:intergenic
CTATTGTCCAGTAACGTCCA+AGG 0.628088 7_4:+873860 None:intergenic
TCACCAGAAGCACCTCAACA+AGG 0.630442 7_4:-874505 Msa1134400:CDS
CTTTACTACGATTTATCTCG+CGG 0.635603 7_4:-873833 Msa1134400:intron
TGAGTCTGAGGATAGAAGGA+TGG 0.636242 7_4:-874434 Msa1134400:CDS
CACCAGAAGCACCTCAACAA+GGG 0.650042 7_4:-874504 Msa1134400:CDS
CTCTCATTAGATGCATGAGT+AGG 0.653011 7_4:-874632 Msa1134400:five_prime_UTR
ACTGTGAGCCTGCAAAACCA+TGG 0.656363 7_4:-873031 Msa1134400:CDS
TTGTCTCAAAACATCAACAC+TGG 0.656717 7_4:-871170 Msa1134400:CDS
AATTGTAGCATTCACAGCAG+TGG 0.669454 7_4:-872528 Msa1134400:CDS
GGCAACCTATGTCTATACAA+AGG 0.679165 7_4:+872413 None:intergenic
TTATGTATAGAACAGTGTAG+AGG 0.694790 7_4:+872997 None:intergenic
TATAGACATAGGTTGCCAGG+TGG 0.698387 7_4:-872407 Msa1134400:CDS
TGAAGCTGCGATGCACCATG+CGG 0.707890 7_4:+871548 None:intergenic
GCTCCAAAAGAAGATACACA+TGG 0.731891 7_4:+872638 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTAATTCTATATATGTTT+AGG - chr7_4:873628-873647 Msa1134400:intron 10.0%
!! AGAATGCATTAAAATATATT+AGG - chr7_4:871358-871377 Msa1134400:CDS 15.0%
!! ACTTATTATGATTATGAAAA+TGG - chr7_4:871410-871429 Msa1134400:CDS 15.0%
!!! AATGATATTTTACAATTTTG+TGG + chr7_4:871845-871864 None:intergenic 15.0%
!!! TTATTTTCTTAAGTTACTAA+TGG - chr7_4:872703-872722 Msa1134400:intron 15.0%
!!! TGAAAATATTTTGTTAGAAT+AGG - chr7_4:873352-873371 Msa1134400:intron 15.0%
!!! AAACTCACTTTTACATATAA+GGG + chr7_4:870934-870953 None:intergenic 20.0%
!!! AAAACTCACTTTTACATATA+AGG + chr7_4:870935-870954 None:intergenic 20.0%
!! ATACATACCAAATATAAAGA+AGG + chr7_4:871205-871224 None:intergenic 20.0%
!! TTAAGAGTGAATAAATAGAT+TGG - chr7_4:871771-871790 Msa1134400:CDS 20.0%
!!! CTAATTTTCCTATGAAATTT+AGG + chr7_4:872077-872096 None:intergenic 20.0%
!!! TTTCATAGGAAAATTAGTTT+AGG - chr7_4:872080-872099 Msa1134400:intron 20.0%
!!! CAATTTATTTTAATCTTCGT+TGG - chr7_4:872829-872848 Msa1134400:intron 20.0%
!! GTGTAAATAAATCATGTTTA+TGG + chr7_4:873543-873562 None:intergenic 20.0%
!! AAGAATAATATCTCTTACAA+TGG + chr7_4:873585-873604 None:intergenic 20.0%
!!! GAATTGGAATTAGTTTTATA+AGG + chr7_4:873749-873768 None:intergenic 20.0%
!! TTGATTCAATATTGCTTAAT+TGG - chr7_4:874140-874159 Msa1134400:intron 20.0%
!!! TTCTAGCTAGTTTAAATATA+TGG - chr7_4:874535-874554 Msa1134400:exon 20.0%
!! TATATGGAGTTATATATGTA+AGG - chr7_4:874551-874570 Msa1134400:five_prime_UTR 20.0%
!! GATTTTCCATGAATATTAAC+AGG + chr7_4:871144-871163 None:intergenic 25.0%
!!! TAGTATATGTCATGTTTTTG+AGG - chr7_4:871281-871300 Msa1134400:CDS 25.0%
!!! ATGTTTTTGAGGTAAAAGAT+AGG - chr7_4:871292-871311 Msa1134400:CDS 25.0%
!!! GATTTTTTTTGTTGCTTCTA+TGG - chr7_4:871456-871475 Msa1134400:CDS 25.0%
! ATGCATCACATAAAACATAA+AGG + chr7_4:871548-871567 None:intergenic 25.0%
!! AGATTGAATGTCTAAAGTTT+CGG - chr7_4:871747-871766 Msa1134400:CDS 25.0%
! GTTAACTAGAAATGTTACAT+TGG - chr7_4:871919-871938 Msa1134400:intron 25.0%
! ATAAGTGACCTAAATTTCAT+AGG - chr7_4:872066-872085 Msa1134400:intron 25.0%
!! ATTCCAAACTTTTATGAACA+GGG - chr7_4:872380-872399 Msa1134400:CDS 25.0%
! TTCCTAATAGAAGTGATAAT+TGG + chr7_4:872469-872488 None:intergenic 25.0%
! ATTCTATCATATTTCTCAAC+AGG - chr7_4:872852-872871 Msa1134400:intron 25.0%
! GTCTATGTTCAAATGAAATT+GGG - chr7_4:873014-873033 Msa1134400:CDS 25.0%
!! TCTAACATGCTTTTCTTTAT+TGG - chr7_4:873080-873099 Msa1134400:CDS 25.0%
!!! ATAGAAAGCATCAAAACTTT+TGG + chr7_4:873328-873347 None:intergenic 25.0%
! AACCAATAAGCACTTAAATT+TGG + chr7_4:874119-874138 None:intergenic 25.0%
!!! GCAAGTTTGATTACTTTTAT+TGG - chr7_4:874372-874391 Msa1134400:CDS 25.0%
! TTGACAATTTGACAAACAAT+GGG - chr7_4:874498-874517 Msa1134400:CDS 25.0%
GTGTGTTAGAGTTAGTAAAA+TGG - chr7_4:870975-870994 Msa1134400:three_prime_UTR 30.0%
TCTACACCTGTTAATATTCA+TGG - chr7_4:871135-871154 Msa1134400:CDS 30.0%
TATTCATGGAAAATCCATTG+AGG - chr7_4:871149-871168 Msa1134400:CDS 30.0%
!!! AGTTTTAGAAAGATCCTCAA+TGG + chr7_4:871166-871185 None:intergenic 30.0%
!! ATTGAGGATCTTTCTAAAAC+TGG - chr7_4:871165-871184 Msa1134400:CDS 30.0%
ATTGCTGCCTTCTTTATATT+TGG - chr7_4:871195-871214 Msa1134400:CDS 30.0%
ATCTTACGATATGTGTATGT+TGG - chr7_4:871236-871255 Msa1134400:CDS 30.0%
TAGGATAAGATCTGAATTCT+TGG - chr7_4:871311-871330 Msa1134400:CDS 30.0%
!!! TTTTTTTGTTGCTTCTATGG+TGG - chr7_4:871459-871478 Msa1134400:CDS 30.0%
AAATGAAATGGCAGAAAGAA+TGG - chr7_4:871492-871511 Msa1134400:CDS 30.0%
! TTTTGGACTTTCTGTTAACA+TGG - chr7_4:871519-871538 Msa1134400:CDS 30.0%
! TAAGAAGTTATTGACTGCAT+TGG + chr7_4:871590-871609 None:intergenic 30.0%
AATGCAGTCAATAACTTCTT+AGG - chr7_4:871589-871608 Msa1134400:CDS 30.0%
! TGTGGATGTATTTGAAATGA+GGG + chr7_4:871827-871846 None:intergenic 30.0%
! TTGTGGATGTATTTGAAATG+AGG + chr7_4:871828-871847 None:intergenic 30.0%
TTCATAGACAAATTAGTCCT+TGG + chr7_4:871973-871992 None:intergenic 30.0%
!!! TTGATAGAGACTATTTTGAC+CGG - chr7_4:872191-872210 Msa1134400:intron 30.0%
! AGTATGTAGTTTTTGCGAAT+CGG + chr7_4:872244-872263 None:intergenic 30.0%
TTTGTTTCGACTTAGTGAAT+AGG + chr7_4:872304-872323 None:intergenic 30.0%
CTAATCTTGATCTGATAATC+TGG - chr7_4:872330-872349 Msa1134400:CDS 30.0%
! CATTCCAAACTTTTATGAAC+AGG - chr7_4:872379-872398 Msa1134400:CDS 30.0%
! ATAATTGGTCACAGTTTTCT+TGG + chr7_4:872454-872473 None:intergenic 30.0%
GACCAATTATCACTTCTATT+AGG - chr7_4:872464-872483 Msa1134400:CDS 30.0%
TTATGTATAGAACAGTGTAG+AGG + chr7_4:872526-872545 None:intergenic 30.0%
GTTCTATACATAACAGCATT+TGG - chr7_4:872533-872552 Msa1134400:CDS 30.0%
TTCTATCTTTCTGTGACAAT+TGG - chr7_4:872966-872985 Msa1134400:intron 30.0%
GGTCTATGTTCAAATGAAAT+TGG - chr7_4:873013-873032 Msa1134400:CDS 30.0%
ATGTTCAAATGAAATTGGGT+TGG - chr7_4:873018-873037 Msa1134400:CDS 30.0%
TGTTCAAATGAAATTGGGTT+GGG - chr7_4:873019-873038 Msa1134400:CDS 30.0%
! TTCTTTTCTCTTTCGATAAG+CGG + chr7_4:873174-873193 None:intergenic 30.0%
CGAAAGAGAAAAGAATCATT+TGG - chr7_4:873179-873198 Msa1134400:intron 30.0%
! TTTGGTAATAGTGAAGTTGT+TGG - chr7_4:873197-873216 Msa1134400:intron 30.0%
! TTGGTAATAGTGAAGTTGTT+GGG - chr7_4:873198-873217 Msa1134400:intron 30.0%
! TGTTTAAGGTATATGCTTGT+TGG + chr7_4:873827-873846 None:intergenic 30.0%
TATACCTTAAACACTCACTT+AGG - chr7_4:873834-873853 Msa1134400:CDS 30.0%
TTTACCTAAGTGAGTGTTTA+AGG + chr7_4:873841-873860 None:intergenic 30.0%
CTAATATGAGGAATACACTT+AGG + chr7_4:873902-873921 None:intergenic 30.0%
! CAAAGAATTGGAATTGGTTT+AGG - chr7_4:873993-874012 Msa1134400:CDS 30.0%
! TTTCGATTTTATCAGTTGCT+TGG - chr7_4:874018-874037 Msa1134400:CDS 30.0%
! TTCGATTTTATCAGTTGCTT+GGG - chr7_4:874019-874038 Msa1134400:CDS 30.0%
TAAGCACTTAAATTTGGCAT+TGG + chr7_4:874113-874132 None:intergenic 30.0%
TGCCAAATTTAAGTGCTTAT+TGG - chr7_4:874114-874133 Msa1134400:intron 30.0%
!!! ATTTTGCATTGTTGGTTTGT+TGG - chr7_4:874175-874194 Msa1134400:intron 30.0%
! TCTTTTATCTGAATTTCCAG+TGG + chr7_4:874318-874337 None:intergenic 30.0%
CAGATAAAAGACAAGAATCT+TGG - chr7_4:874327-874346 Msa1134400:CDS 30.0%
CTTGACAATTTGACAAACAA+TGG - chr7_4:874497-874516 Msa1134400:CDS 30.0%
!! AAAGTGACGGGTATATTTAA+TGG - chr7_4:874592-874611 Msa1134400:five_prime_UTR 30.0%
TCAATGAGCAGAAAGAAACT+TGG - chr7_4:871051-871070 Msa1134400:CDS 35.0%
! CATTTTCTTCATTGAGTCTG+AGG - chr7_4:871074-871093 Msa1134400:CDS 35.0%
!! ATCTTTCTAAAACTGGTGGT+TGG - chr7_4:871172-871191 Msa1134400:CDS 35.0%
! GCAGAAAGAATGGCTTATTT+TGG - chr7_4:871502-871521 Msa1134400:CDS 35.0%
CTTTACTACGATTTATCTCG+CGG - chr7_4:871687-871706 Msa1134400:CDS 35.0%
ATCTGACAGCTCAAATCAAA+AGG + chr7_4:871725-871744 None:intergenic 35.0%
! GTGGATGTATTTGAAATGAG+GGG + chr7_4:871826-871845 None:intergenic 35.0%
TTGGAGAGTTAACATTGATG+TGG + chr7_4:871954-871973 None:intergenic 35.0%
ACATCAATGTTAACTCTCCA+AGG - chr7_4:871953-871972 Msa1134400:intron 35.0%
ACATTGATGCTAGATCAATG+TGG - chr7_4:872110-872129 Msa1134400:intron 35.0%
TGTCACATCATAGTCTCTAA+AGG - chr7_4:872162-872181 Msa1134400:intron 35.0%
!! TCTCTGAAACTGTAAAGTAC+CGG + chr7_4:872213-872232 None:intergenic 35.0%
TGAATAGGCAAATTGGTTGT+AGG + chr7_4:872289-872308 None:intergenic 35.0%
GACTTAGTGAATAGGCAAAT+TGG + chr7_4:872296-872315 None:intergenic 35.0%
AAGCCCTGTTCATAAAAGTT+TGG + chr7_4:872386-872405 None:intergenic 35.0%
! TTTTATGAACAGGGCTTAAC+TGG - chr7_4:872389-872408 Msa1134400:CDS 35.0%
! CAGGTATTGTTAGATATAGC+TGG - chr7_4:872561-872580 Msa1134400:CDS 35.0%
TGTTAGATATAGCTGGTGAT+TGG - chr7_4:872568-872587 Msa1134400:CDS 35.0%
! TGAAGTGTTATGACATGTGT+CGG + chr7_4:872677-872696 None:intergenic 35.0%
ATGAAGAATTGACACGACAT+CGG + chr7_4:872757-872776 None:intergenic 35.0%
! AGACCATGTGTATCTTCTTT+TGG - chr7_4:872879-872898 Msa1134400:intron 35.0%
! TTTTGCTTCTTTCGTCGAAT+TGG + chr7_4:872911-872930 None:intergenic 35.0%
! GTTCAAATGAAATTGGGTTG+GGG - chr7_4:873020-873039 Msa1134400:CDS 35.0%
GTACACCTTTGTATAGACAT+AGG - chr7_4:873102-873121 Msa1134400:CDS 35.0%
TTTATAGCAGATCTTCTACC+AGG + chr7_4:873236-873255 None:intergenic 35.0%
TGGTAGAAGATCTGCTATAA+AGG - chr7_4:873235-873254 Msa1134400:intron 35.0%
GGTAGAAGATCTGCTATAAA+GGG - chr7_4:873236-873255 Msa1134400:intron 35.0%
GTTTCTGACACGTATACTTT+CGG + chr7_4:873521-873540 None:intergenic 35.0%
GCTCTACAATTGAAACAAGA+TGG - chr7_4:873666-873685 Msa1134400:intron 35.0%
! CTACTTGTGTTACTGTACAA+AGG + chr7_4:873713-873732 None:intergenic 35.0%
GACTGAGAGAGTTAGAAATT+CGG + chr7_4:873805-873824 None:intergenic 35.0%
GGTAATAGAGAGCTAATATG+AGG + chr7_4:873914-873933 None:intergenic 35.0%
TGAAAAGCGGTACAAAAGTT+TGG + chr7_4:873935-873954 None:intergenic 35.0%
CAGCTTCAAAGAATTGGAAT+TGG - chr7_4:873987-874006 Msa1134400:CDS 35.0%
!! GCTGAAGTATTTTGCATTGT+TGG - chr7_4:874167-874186 Msa1134400:intron 35.0%
! CCAATACTTTTCATAGCATC+AGG + chr7_4:874221-874240 None:intergenic 35.0%
! CCTGATGCTATGAAAAGTAT+TGG - chr7_4:874218-874237 Msa1134400:intron 35.0%
TTGTCTCAAAACATCAACAC+TGG - chr7_4:874350-874369 Msa1134400:CDS 35.0%
CAGCACATAGATACAAATAC+AGG - chr7_4:874441-874460 Msa1134400:CDS 35.0%
!! GTATTAGTCCTCTAAAGTGA+CGG - chr7_4:874579-874598 Msa1134400:five_prime_UTR 35.0%
!! TATTAGTCCTCTAAAGTGAC+GGG - chr7_4:874580-874599 Msa1134400:five_prime_UTR 35.0%
! AAATATACCCGTCACTTTAG+AGG + chr7_4:874590-874609 None:intergenic 35.0%
CTCTCATTAGATGCATGAGT+AGG - chr7_4:870888-870907 Msa1134400:three_prime_UTR 40.0%
TTTCTGCTCATTGAAGTGCA+TGG + chr7_4:871045-871064 None:intergenic 40.0%
TCATTGAGTCTGAGGATAGA+AGG - chr7_4:871082-871101 Msa1134400:CDS 40.0%
! AGGATAGAAGGATGGCTTTA+GGG - chr7_4:871094-871113 Msa1134400:CDS 40.0%
!! GAGGATCTTTCTAAAACTGG+TGG - chr7_4:871168-871187 Msa1134400:CDS 40.0%
CCAATCTCAGCAAACAAACA+TGG + chr7_4:871384-871403 None:intergenic 40.0%
! CCATGTTTGTTTGCTGAGAT+TGG - chr7_4:871381-871400 Msa1134400:CDS 40.0%
GGTTACTGCAGGAAATGAAA+TGG - chr7_4:871480-871499 Msa1134400:CDS 40.0%
GCATTGGATGAACTTGCAAA+AGG + chr7_4:871574-871593 None:intergenic 40.0%
TCACAAGCTTCTTCTGTTCT+TGG - chr7_4:871616-871635 Msa1134400:CDS 40.0%
TTTCTTGCTGATGCATACCT+TGG - chr7_4:871643-871662 Msa1134400:CDS 40.0%
ATGCTAGATCAATGTGGTTG+AGG - chr7_4:872116-872135 Msa1134400:intron 40.0%
! TGGTCACAGTTTTCTTGGTT+TGG + chr7_4:872449-872468 None:intergenic 40.0%
! TAGAGGTATGTCATTTGCCA+TGG + chr7_4:872509-872528 None:intergenic 40.0%
GACATCGGACACAATACTAA+CGG + chr7_4:872742-872761 None:intergenic 40.0%
GCTCCAAAAGAAGATACACA+TGG + chr7_4:872885-872904 None:intergenic 40.0%
AATTGTAGCATTCACAGCAG+TGG - chr7_4:872992-873011 Msa1134400:CDS 40.0%
TGGTTCATTGGCAATAGCAA+TGG - chr7_4:873052-873071 Msa1134400:CDS 40.0%
GGTTCATTGGCAATAGCAAT+GGG - chr7_4:873053-873072 Msa1134400:CDS 40.0%
GGCAACCTATGTCTATACAA+AGG + chr7_4:873110-873129 None:intergenic 40.0%
TTGTATAGACATAGGTTGCC+AGG - chr7_4:873110-873129 Msa1134400:CDS 40.0%
! TGAAGTTGTTGGGTTGTATG+AGG - chr7_4:873208-873227 Msa1134400:intron 40.0%
TTGCTCACACTGATGATTTC+AGG - chr7_4:873270-873289 Msa1134400:intron 40.0%
!! GGTTCCATTGACTTGGATTA+GGG + chr7_4:873692-873711 None:intergenic 40.0%
!! AGGTTCCATTGACTTGGATT+AGG + chr7_4:873693-873712 None:intergenic 40.0%
! GTACAAAGGTTCCATTGACT+TGG + chr7_4:873699-873718 None:intergenic 40.0%
ATGATTGTGCAAGCTGGAAT+TGG + chr7_4:873765-873784 None:intergenic 40.0%
TTAAGCATGATTGTGCAAGC+TGG + chr7_4:873771-873790 None:intergenic 40.0%
! AGTGTTGTTAAATCTGCCAC+TGG - chr7_4:874299-874318 Msa1134400:intron 40.0%
GACACAGCATGTTTATGAGA+TGG - chr7_4:874463-874482 Msa1134400:CDS 40.0%
TGAGTCTGAGGATAGAAGGA+TGG - chr7_4:871086-871105 Msa1134400:CDS 45.0%
GAGGATAGAAGGATGGCTTT+AGG - chr7_4:871093-871112 Msa1134400:CDS 45.0%
TTAGGGCGTGGTTATACAAG+AGG - chr7_4:871111-871130 Msa1134400:CDS 45.0%
CAAGCTTCTTCTGTTCTTGG+TGG - chr7_4:871619-871638 Msa1134400:CDS 45.0%
ATGCATACCTTGGACGTTAC+TGG - chr7_4:871653-871672 Msa1134400:CDS 45.0%
CTATTGTCCAGTAACGTCCA+AGG + chr7_4:871663-871682 None:intergenic 45.0%
CTACGATTTATCTCGCGGTA+TGG - chr7_4:871692-871711 Msa1134400:CDS 45.0%
!! GTCATTTGCCATGGTTTTGC+AGG + chr7_4:872500-872519 None:intergenic 45.0%
! ATAACAGCATTTGGAGCTGC+AGG - chr7_4:872542-872561 Msa1134400:CDS 45.0%
CCAACACGGGAAAGAAATGT+CGG + chr7_4:872634-872653 None:intergenic 45.0%
ATCGGACACAATACTAACGG+TGG + chr7_4:872739-872758 None:intergenic 45.0%
!!! GGGTTCTGCTTTTGGTTCAT+TGG - chr7_4:873040-873059 Msa1134400:CDS 45.0%
TATAGACATAGGTTGCCAGG+TGG - chr7_4:873113-873132 Msa1134400:CDS 45.0%
TACACGAGTCGCTCAAGTAT+TGG - chr7_4:873145-873164 Msa1134400:intron 45.0%
TTGGAGCTGAGTAGTTAGCA+AGG + chr7_4:873309-873328 None:intergenic 45.0%
ATGGCCCTAATCCAAGTCAA+TGG - chr7_4:873685-873704 Msa1134400:intron 45.0%
ACTTCCAGTTACATGCATGC+CGG - chr7_4:873866-873885 Msa1134400:CDS 45.0%
AAAACCGGCATGCATGTAAC+TGG + chr7_4:873873-873892 None:intergenic 45.0%
ACACTTAGGCCTGGAAAAAC+CGG + chr7_4:873888-873907 None:intergenic 45.0%
ATGAGGAATACACTTAGGCC+TGG + chr7_4:873897-873916 None:intergenic 45.0%
CCAGTGATGCGTTTGAAAAG+CGG + chr7_4:873948-873967 None:intergenic 45.0%
GCATCGCAGCTTCAAAGAAT+TGG - chr7_4:873981-874000 Msa1134400:CDS 45.0%
!! TCTGCTTATGCTGCTTTAGC+TGG - chr7_4:874242-874261 Msa1134400:intron 45.0%
!! TCACCAGAAGCACCTCAACA+AGG - chr7_4:871015-871034 Msa1134400:CDS 50.0%
!! CACCAGAAGCACCTCAACAA+GGG - chr7_4:871016-871035 Msa1134400:CDS 50.0%
GCTTCTATGGTGGTTACTGC+AGG - chr7_4:871469-871488 Msa1134400:CDS 50.0%
ACTGTGAGCCTGCAAAACCA+TGG - chr7_4:872489-872508 Msa1134400:CDS 50.0%
CCGACATTTCTTTCCCGTGT+TGG - chr7_4:872631-872650 Msa1134400:CDS 50.0%
TGTCGGCATCATGTCGATGT+CGG + chr7_4:872660-872679 None:intergenic 50.0%
!!! TTGGGTTGGGGTTCTGCTTT+TGG - chr7_4:873032-873051 Msa1134400:CDS 50.0%
ACTTGAGCGACTCGTGTAAG+AGG + chr7_4:873143-873162 None:intergenic 50.0%
! GTTGGGTTGTATGAGGTTCC+TGG - chr7_4:873215-873234 Msa1134400:intron 50.0%
!!! ACATGCATGCCGGTTTTTCC+AGG - chr7_4:873876-873895 Msa1134400:CDS 50.0%
!! CCGCTTTTCAAACGCATCAC+TGG - chr7_4:873945-873964 Msa1134400:CDS 50.0%
!! GCTTATGCTGCTTTAGCTGG+TGG - chr7_4:874245-874264 Msa1134400:intron 50.0%
!! GCTGCTTTAGCTGGTGGATT+AGG - chr7_4:874251-874270 Msa1134400:intron 50.0%
! GTCCCTTGTTGAGGTGCTTC+TGG + chr7_4:871021-871040 None:intergenic 55.0%
GTGCATGGTGTCCCTTGTTG+AGG + chr7_4:871030-871049 None:intergenic 55.0%
!! AGAAGGATGGCTTTAGGGCG+TGG - chr7_4:871099-871118 Msa1134400:CDS 55.0%
TCGATGTCGGACACCAACAC+GGG + chr7_4:872647-872666 None:intergenic 55.0%
GTCGATGTCGGACACCAACA+CGG + chr7_4:872648-872667 None:intergenic 55.0%
CGTGTAAGAGGACTTCCACC+TGG + chr7_4:873131-873150 None:intergenic 55.0%
TGAAGCTGCGATGCACCATG+CGG + chr7_4:873975-873994 None:intergenic 55.0%
CGCATCACTGGTCATCCGCA+TGG - chr7_4:873957-873976 Msa1134400:CDS 60.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 870872 874670 870872 ID=Msa1134400;Name=Msa1134400
chr7_4 mRNA 870872 874670 870872 ID=Msa1134400-mRNA-1;Parent=Msa1134400;Name=Msa1134400-mRNA-1;_AED=0.10;_eAED=0.10;_QI=122|1|1|1|1|1|5|126|638
chr7_4 exon 870872 871892 870872 ID=Msa1134400-mRNA-1:exon:326;Parent=Msa1134400-mRNA-1
chr7_4 exon 872251 872668 872251 ID=Msa1134400-mRNA-1:exon:325;Parent=Msa1134400-mRNA-1
chr7_4 exon 872979 873141 872979 ID=Msa1134400-mRNA-1:exon:324;Parent=Msa1134400-mRNA-1
chr7_4 exon 873834 874051 873834 ID=Msa1134400-mRNA-1:exon:323;Parent=Msa1134400-mRNA-1
chr7_4 exon 874326 874670 874326 ID=Msa1134400-mRNA-1:exon:322;Parent=Msa1134400-mRNA-1
chr7_4 five_prime_UTR 874549 874670 874549 ID=Msa1134400-mRNA-1:five_prime_utr;Parent=Msa1134400-mRNA-1
chr7_4 CDS 874326 874548 874326 ID=Msa1134400-mRNA-1:cds;Parent=Msa1134400-mRNA-1
chr7_4 CDS 873834 874051 873834 ID=Msa1134400-mRNA-1:cds;Parent=Msa1134400-mRNA-1
chr7_4 CDS 872979 873141 872979 ID=Msa1134400-mRNA-1:cds;Parent=Msa1134400-mRNA-1
chr7_4 CDS 872251 872668 872251 ID=Msa1134400-mRNA-1:cds;Parent=Msa1134400-mRNA-1
chr7_4 CDS 870998 871892 870998 ID=Msa1134400-mRNA-1:cds;Parent=Msa1134400-mRNA-1
chr7_4 three_prime_UTR 870872 870997 870872 ID=Msa1134400-mRNA-1:three_prime_utr;Parent=Msa1134400-mRNA-1
Gene Sequence

>Msa1134400

ATGGATACTTGTGAGATCAAGTCACCAGAAGCACCTCAACAAGGGACACCATGCACTTCAATGAGCAGAAAGAAACTTGGCATTTTCTTCATTGAGTCTGAGGATAGAAGGATGGCTTTAGGGCGTGGTTATACAAGAGGTTCTACACCTGTTAATATTCATGGAAAATCCATTGAGGATCTTTCTAAAACTGGTGGTTGGATTGCTGCCTTCTTTATATTTGGAAATGAAATGGCAGAAAGAATGGCTTATTTTGGACTTTCTGTTAACATGGTAGCCTTTATGTTTTATGTGATGCATAGACCTTTTGCAAGTTCATCCAATGCAGTCAATAACTTCTTAGGAATATCACAAGCTTCTTCTGTTCTTGGTGGATTTCTTGCTGATGCATACCTTGGACGTTACTGGACAATAGCTATCTTTACTACGATTTATCTCGCGGGCTTAACTGGAATAACAATATGTGCAACAATGAGCATTTTTGTGCCAAACCAAGAAAACTGTGACCAATTATCACTTCTATTAGGAAACTGTGAGCCTGCAAAACCATGGCAAATGACATACCTCTACACTGTTCTATACATAACAGCATTTGGAGCTGCAGGTATAAGACCATGTGTATCTTCTTTTGGAGCAGACCAATTCGACGAAAGAAGCAAAAACTACAAATCACATCTTGACAGATTTTTCAACTTGTTCTATCTTTCTGTGACAATTGGTGCAATTGTAGCATTCACAGCAGTGGTCTATGTTCAAATGAAATTGGGTTGGGGTTCTGCTTTTGGTTCATTGGCAATAGCAATGGGAGTATCTAACATGCTTTTCTTTATTGGTACACCTTTGTATAGACATAGGTTGCCAGGTGGAAGTCCTCTTACACGAGTCGCTCAAGTATTGGTTGCCGCTTATCGAAAGAGAAAAGAATCATTTGGTAATAGTGAAGTTGTTGGGTTGTATGAGGTTCCTGGTAGAAGATCTGCTATAAAGGGTAGTCAGAAAATTGCTCACACTGATGATTTCAGGTTTCTTGACAAAGCAGCTCTACAATTGAAACAAGATGGCCCTAATCCAAGTCAATGGAACCTTTGTACAGTAACACAAGTAGAAGAAGTGAAGATCCTTATAAAACTAATTCCAATTCCAGCTTGCACAATCATGCTTAATGTAATCTTAACCGAATTTCTAACTCTCTCAGTCCAACAAGCATATACCTTAAACACTCACTTAGGTAAATTAAAACTTCCAGTTACATGCATGCCGGTTTTTCCAGGCCTAAGTGTATTCCTCATATTAGCTCTCTATTACCAAACTTTTGTACCGCTTTTCAAACGCATCACTGGTCATCCGCATGGTGCATCGCAGCTTCAAAGAATTGGAATTGGTTTAGGAGTTTCGATTTTATCAGTTGCTTGGGCTGCAATCTTCGAAAAGTATAGAAGAAACTATGCGATAAAAAATGAATTTGAAGCTAGTTTCTTAACACCAATGCCAAATTTAAGTGCTTATTGGTTATTGATTCAATATTGCTTAATTGGTGTAGCTGAAGTATTTTGCATTGTTGGTTTGTTGGAGTTTTTATATGAAGAAGCACCTGATGCTATGAAAAGTATTGGTTCTGCTTATGCTGCTTTAGCTGGTGGATTAGGTTGTTTTTTTGCAACATTTATAAATAGTGTTGTTAAATCTGCCACTGGAAATTCAGATAAAAGACAAGAATCTTGGTTGTCTCAAAACATCAACACTGGCAAGTTTGATTACTTTTATTGGCTTCTTACAGCTTTGAGCTTAGTCAATTTCTGCATCTTCTTATATTCAGCACATAGATACAAATACAGGACACAGCATGTTTATGAGATGGAGAACATTAAACTTGACAATTTGACAAACAATGGGAGCTCTACAACAGTTTCTAGCTAG
Protein sequence

>Msa1134400

MDTCEIKSPEAPQQGTPCTSMSRKKLGIFFIESEDRRMALGRGYTRGSTPVNIHGKSIEDLSKTGGWIAAFFIFGNEMAERMAYFGLSVNMVAFMFYVMHRPFASSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITICATMSIFVPNQENCDQLSLLLGNCEPAKPWQMTYLYTVLYITAFGAAGIRPCVSSFGADQFDERSKNYKSHLDRFFNLFYLSVTIGAIVAFTAVVYVQMKLGWGSAFGSLAIAMGVSNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAYRKRKESFGNSEVVGLYEVPGRRSAIKGSQKIAHTDDFRFLDKAALQLKQDGPNPSQWNLCTVTQVEEVKILIKLIPIPACTIMLNVILTEFLTLSVQQAYTLNTHLGKLKLPVTCMPVFPGLSVFLILALYYQTFVPLFKRITGHPHGASQLQRIGIGLGVSILSVAWAAIFEKYRRNYAIKNEFEASFLTPMPNLSAYWLLIQYCLIGVAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFFATFINSVVKSATGNSDKRQESWLSQNINTGKFDYFYWLLTALSLVNFCIFLYSAHRYKYRTQHVYEMENIKLDNLTNNGSSTTVSS*