Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1371530 | KEH40270.1 | 98.347 | 484 | 8 | 0 | 1 | 484 | 1 | 484 | 0.0 | 989 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1371530 | sp|Q9SRE5|Y1666_ARATH | 59.267 | 464 | 138 | 10 | 24 | 482 | 7 | 424 | 2.45e-169 | 487 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1371530 | A0A072VQ62 | 98.347 | 484 | 8 | 0 | 1 | 484 | 1 | 484 | 0.0 | 989 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0109730 | Msa1371530 | 0.801973 | 6.992651e-49 | -8.615850e-47 |
| Msa1347610 | Msa1371530 | 0.812667 | 3.777652e-51 | -8.615850e-47 |
| Msa1349850 | Msa1371530 | -0.822262 | 2.602050e-53 | -8.615850e-47 |
| Msa1356450 | Msa1371530 | 0.832174 | 1.099064e-55 | -8.615850e-47 |
| Msa1362590 | Msa1371530 | 0.811011 | 8.666526e-51 | -8.615850e-47 |
| Msa1368170 | Msa1371530 | 0.814235 | 1.708159e-51 | -8.615850e-47 |
| Msa1371530 | Msa1385570 | 0.842861 | 1.996073e-58 | -8.615850e-47 |
| Msa1371530 | Msa1420830 | 0.819315 | 1.239146e-52 | -8.615850e-47 |
| Msa1371530 | Msa1447900 | 0.809330 | 1.996040e-50 | -8.615850e-47 |
| Msa0660260 | Msa1371530 | 0.809717 | 1.647894e-50 | -8.615850e-47 |
| Msa0685610 | Msa1371530 | 0.834250 | 3.340306e-56 | -8.615850e-47 |
| Msa0831820 | Msa1371530 | 0.801070 | 1.070937e-48 | -8.615850e-47 |
| Msa0138350 | Msa1371530 | 0.993971 | 1.378166e-203 | -8.615850e-47 |
| Msa0147970 | Msa1371530 | 0.975742 | 1.633305e-140 | -8.615850e-47 |
| Msa0173380 | Msa1371530 | 0.807641 | 4.577506e-50 | -8.615850e-47 |
| Msa1278030 | Msa1371530 | 0.823800 | 1.139505e-53 | -8.615850e-47 |
| Msa1335500 | Msa1371530 | 0.800714 | 1.266303e-48 | -8.615850e-47 |
| Msa0432200 | Msa1371530 | 0.804934 | 1.701692e-49 | -8.615850e-47 |
| Msa1008850 | Msa1371530 | 0.833446 | 5.308527e-56 | -8.615850e-47 |
| Msa1026710 | Msa1371530 | 0.823531 | 1.317309e-53 | -8.615850e-47 |
| Msa1033420 | Msa1371530 | 0.809444 | 1.886411e-50 | -8.615850e-47 |
| Msa1050260 | Msa1371530 | 0.805694 | 1.179840e-49 | -8.615850e-47 |
| Msa1073060 | Msa1371530 | 0.804580 | 2.017652e-49 | -8.615850e-47 |
| Msa0300670 | Msa1371530 | -0.802561 | 5.291378e-49 | -8.615850e-47 |
| Msa1127420 | Msa1371530 | 0.801193 | 1.010411e-48 | -8.615850e-47 |
| Msa1138800 | Msa1371530 | 0.804821 | 1.797222e-49 | -8.615850e-47 |
| Msa1154630 | Msa1371530 | 0.818856 | 1.575990e-52 | -8.615850e-47 |
| Msa1180840 | Msa1371530 | 0.820045 | 8.441285e-53 | -8.615850e-47 |
| Msa0521060 | Msa1371530 | 0.816510 | 5.328059e-52 | -8.615850e-47 |
| Msa0527200 | Msa1371530 | 0.996451 | 1.076593e-227 | -8.615850e-47 |
| Msa0541880 | Msa1371530 | 0.829377 | 5.325568e-55 | -8.615850e-47 |
| Msa0541940 | Msa1371530 | 0.831268 | 1.837686e-55 | -8.615850e-47 |
| Msa0571350 | Msa1371530 | 0.820675 | 6.052116e-53 | -8.615850e-47 |
| Msa0575950 | Msa1371530 | 0.802807 | 4.709102e-49 | -8.615850e-47 |
| Msa0587180 | Msa1371530 | 0.803734 | 3.026273e-49 | -8.615850e-47 |
| Msa0930950 | Msa1371530 | -0.809884 | 1.517134e-50 | -8.615850e-47 |
| Msa0970040 | Msa1371530 | 0.819000 | 1.461470e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1371530 | MtrunA17_Chr1g0157491 | 98.698 | 461 | 6 | 0 | 24 | 484 | 13 | 473 | 0.0 | 945 |
| Msa1371530 | MtrunA17_Chr6g0467841 | 46.948 | 213 | 101 | 4 | 25 | 230 | 33 | 240 | 5.80e-40 | 150 |
| Msa1371530 | MtrunA17_Chr8g0387051 | 47.030 | 202 | 95 | 5 | 24 | 219 | 42 | 237 | 7.93e-38 | 144 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1371530 | AT1G76660.1 | 59.267 | 464 | 138 | 10 | 24 | 482 | 7 | 424 | 2.49e-170 | 487 |
| Msa1371530 | AT1G76660.2 | 54.545 | 363 | 117 | 7 | 122 | 482 | 1 | 317 | 1.89e-116 | 345 |
| Msa1371530 | AT5G52430.1 | 43.750 | 224 | 105 | 8 | 24 | 232 | 32 | 249 | 1.96e-34 | 134 |
| Msa1371530 | AT1G63720.1 | 35.401 | 274 | 158 | 6 | 16 | 285 | 28 | 286 | 1.31e-31 | 125 |
| Msa1371530 | AT4G25620.1 | 42.326 | 215 | 98 | 9 | 25 | 226 | 32 | 233 | 5.31e-22 | 99.0 |
Find 167 sgRNAs with CRISPR-Local
Find 218 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTGGGTCTGGGAGGGTTTC+TGG | -0.012729 | tig0019233:+104961 | Msa1371530:CDS |
| TTGATATTTCCTGCAGATTC+TGG | 0.185494 | tig0019233:-105959 | None:intergenic |
| TACCTATGCACAATTCTATT+TGG | 0.226625 | tig0019233:+105041 | Msa1371530:CDS |
| TCATCACTGTATCCTGAAAA+TGG | 0.253710 | tig0019233:+104925 | Msa1371530:CDS |
| CCAGCCACTTGGGGCCCATT+TGG | 0.259334 | tig0019233:-104403 | None:intergenic |
| TCACCAGAGTTCCTTGATAT+TGG | 0.281584 | tig0019233:-104853 | None:intergenic |
| AGAAAGATTGTATAAGTATT+AGG | 0.288801 | tig0019233:-103868 | None:intergenic |
| TATGAGGGAATGGAGGATTT+TGG | 0.301503 | tig0019233:-105065 | None:intergenic |
| TTCTTTGCTTGCTTGCCAAC+TGG | 0.303881 | tig0019233:-105420 | None:intergenic |
| CTGGGTCTGGGAGGGTTTCT+GGG | 0.319925 | tig0019233:+104962 | Msa1371530:CDS |
| AGGCTACTGGCAGGACTTCC+AGG | 0.328429 | tig0019233:-104823 | None:intergenic |
| TTGGGGCCCATTTGGTTGAC+TGG | 0.328650 | tig0019233:-104395 | None:intergenic |
| CTGGCTGATCCATTATTATC+AGG | 0.333530 | tig0019233:-104376 | None:intergenic |
| TCCTTGATATTGGAGATATA+AGG | 0.338998 | tig0019233:-104843 | None:intergenic |
| ACTTGGAGTTGTCTAATAGA+TGG | 0.341135 | tig0019233:+106187 | Msa1371530:three_prime_UTR |
| AAAAGATGGGGAGGTTGTTT+GGG | 0.341988 | tig0019233:+104292 | Msa1371530:CDS |
| TCTCGTATTCCTGATAATAA+TGG | 0.351751 | tig0019233:+104367 | Msa1371530:CDS |
| ATGCAGAGGTTGACTATAGA+AGG | 0.361091 | tig0019233:+106001 | Msa1371530:CDS |
| CCAAATGGGCCCCAAGTGGC+TGG | 0.362429 | tig0019233:+104403 | Msa1371530:CDS |
| TCCATGAGAGTATGATTATC+AGG | 0.365296 | tig0019233:-105904 | None:intergenic |
| AAGTGAGCAAAAGGTACATC+TGG | 0.369839 | tig0019233:-104715 | None:intergenic |
| CGACACTAATGATGTTACTA+TGG | 0.373527 | tig0019233:+104987 | Msa1371530:CDS |
| ACCATGATGCCCTTGACCTC+TGG | 0.374021 | tig0019233:+105288 | Msa1371530:CDS |
| GCTCAATCTACGGGTGGAAA+TGG | 0.386458 | tig0019233:+105123 | Msa1371530:CDS |
| ATTTCTTCCACATCTTGCTT+AGG | 0.387788 | tig0019233:-105171 | None:intergenic |
| AGTTGTTGAAATATAAGTTA+AGG | 0.391176 | tig0019233:-106405 | None:intergenic |
| AAATATCAGAGGACTGGGTC+TGG | 0.392276 | tig0019233:+104949 | Msa1371530:CDS |
| TGGAAGAAATAGAAGCTTAC+CGG | 0.393649 | tig0019233:+105184 | Msa1371530:CDS |
| GAAGCTTACCGGGCATCCTT+TGG | 0.402159 | tig0019233:+105195 | Msa1371530:CDS |
| GTTGTTGAAATATAAGTTAA+GGG | 0.405835 | tig0019233:-106404 | None:intergenic |
| TTGAATTCTTTCATCAATGA+AGG | 0.406547 | tig0019233:-105339 | None:intergenic |
| CTTAATCTGCCACCATTATG+AGG | 0.431013 | tig0019233:-105081 | None:intergenic |
| AATCTGCAGGAAATATCAAA+TGG | 0.433212 | tig0019233:+105963 | Msa1371530:CDS |
| TAGAATTGTGCATAGGTAGC+AGG | 0.433727 | tig0019233:-105036 | None:intergenic |
| AAGGAAAGAAACTCTTTACT+TGG | 0.439431 | tig0019233:+106170 | Msa1371530:three_prime_UTR |
| CAGAAGCTTGCGAGAAAGAA+AGG | 0.445491 | tig0019233:+106026 | Msa1371530:CDS |
| ATTGGTCAACCCAGCCACTT+GGG | 0.446890 | tig0019233:-104413 | None:intergenic |
| TGTGGGCGAAACTCCCGCTC+AGG | 0.448315 | tig0019233:-104895 | None:intergenic |
| AATCCTCCATTCCCTCATAA+TGG | 0.450708 | tig0019233:+105069 | Msa1371530:CDS |
| AAAACAAGGGACTACATTCA+TGG | 0.451350 | tig0019233:-106269 | None:intergenic |
| GATGTTAGAAAGTGAGCAAA+AGG | 0.453692 | tig0019233:-104724 | None:intergenic |
| CGTGGAGATTTCTGATGTAA+TGG | 0.456383 | tig0019233:+105254 | Msa1371530:CDS |
| AGCTGTGTTTCATGAGCATA+TGG | 0.456787 | tig0019233:-104595 | None:intergenic |
| GTTGTTAAGTGAGCCAACTC+TGG | 0.457024 | tig0019233:-104682 | None:intergenic |
| ATCTGCAGGAAATATCAAAT+GGG | 0.459223 | tig0019233:+105964 | Msa1371530:CDS |
| AATATCAGAGGACTGGGTCT+GGG | 0.462841 | tig0019233:+104950 | Msa1371530:CDS |
| GTCAACCTCTTTCCCTGAGC+GGG | 0.463781 | tig0019233:+104882 | Msa1371530:CDS |
| GAATATGATTTGTCATGACT+TGG | 0.464293 | tig0019233:+106049 | Msa1371530:exon |
| ACACCCCGTCGAATCTTCAT+TGG | 0.465939 | tig0019233:-103827 | None:intergenic |
| TCTTGCTTAGGACTTCTAGA+AGG | 0.469074 | tig0019233:-105159 | None:intergenic |
| ATCGTATTTGAAGGACCGCC+AGG | 0.474912 | tig0019233:-104559 | None:intergenic |
| TTTAAGTGGATGCAAACGTT+TGG | 0.478600 | tig0019233:+106324 | Msa1371530:three_prime_UTR |
| CGATTAGACGCGAGTCCAGT+TGG | 0.483659 | tig0019233:+105405 | Msa1371530:CDS |
| AATGGAAAATATCAGAGGAC+TGG | 0.485419 | tig0019233:+104943 | Msa1371530:CDS |
| GGATCAGCCAGTCAACCAAA+TGG | 0.486945 | tig0019233:+104388 | Msa1371530:CDS |
| CATTGATTTGCCAGAGGTCA+AGG | 0.488083 | tig0019233:-105298 | None:intergenic |
| GAGAGGAGCAGTAGATGGTT+CGG | 0.488881 | tig0019233:-104650 | None:intergenic |
| GTCGCATACATCGTATTTGA+AGG | 0.489409 | tig0019233:-104568 | None:intergenic |
| GATTGGTCAACCCAGCCACT+TGG | 0.491046 | tig0019233:-104414 | None:intergenic |
| TCATTATCTGCAAACTCACC+TGG | 0.493733 | tig0019233:+104541 | Msa1371530:CDS |
| GGAGTGAGAGGAGCAGTAGA+TGG | 0.494811 | tig0019233:-104655 | None:intergenic |
| GGACAGAGTCGGTTATATCT+AGG | 0.496269 | tig0019233:-106220 | None:intergenic |
| AAAAGGTACATCTGGGGAAG+AGG | 0.502005 | tig0019233:-104707 | None:intergenic |
| GTAGTGAAATTTGAGAAGAC+TGG | 0.504573 | tig0019233:-104628 | None:intergenic |
| GGATATTGTAGCAACAGCTC+TGG | 0.504750 | tig0019233:+105871 | Msa1371530:CDS |
| TCTTGTTTCAGTTCACAGAA+AGG | 0.507174 | tig0019233:+104322 | Msa1371530:CDS |
| CACTGAAACCAAAGGATGCC+CGG | 0.508288 | tig0019233:-105203 | None:intergenic |
| TGATGTTACTATGGCATCAC+AGG | 0.509412 | tig0019233:+104996 | Msa1371530:CDS |
| GACCTCTGGCAAATCAATGA+TGG | 0.511617 | tig0019233:+105302 | Msa1371530:CDS |
| GCCTTATATCTCCAATATCA+AGG | 0.518593 | tig0019233:+104842 | Msa1371530:CDS |
| TTGTTAAGTGAGCCAACTCT+GGG | 0.521849 | tig0019233:-104681 | None:intergenic |
| AATCAAATTCCTGTATGTGA+TGG | 0.526258 | tig0019233:+105441 | Msa1371530:CDS |
| GCCTGATAATCATACTCTCA+TGG | 0.526761 | tig0019233:+105903 | Msa1371530:CDS |
| AGCTATGCCTGTGACTTGAT+TGG | 0.533069 | tig0019233:-104431 | None:intergenic |
| CCTTCATATCCATCACATAC+AGG | 0.533645 | tig0019233:-105450 | None:intergenic |
| ATGGAAAATATCAGAGGACT+GGG | 0.534187 | tig0019233:+104944 | Msa1371530:CDS |
| GATCAGCCAGTCAACCAAAT+GGG | 0.535549 | tig0019233:+104389 | Msa1371530:CDS |
| TATTGGAGATATAAGGCTAC+TGG | 0.535561 | tig0019233:-104836 | None:intergenic |
| AAACTCCCGCTCAGGGAAAG+AGG | 0.535842 | tig0019233:-104887 | None:intergenic |
| AGAAATCTCCACGTATTGAC+TGG | 0.536110 | tig0019233:-105244 | None:intergenic |
| TCATCCAATGAAGATTCGAC+GGG | 0.536667 | tig0019233:+103823 | None:intergenic |
| GTTTCAGTTCACAGAAAGGT+GGG | 0.537711 | tig0019233:+104326 | Msa1371530:CDS |
| CTGCCACCATTATGAGGGAA+TGG | 0.538108 | tig0019233:-105075 | None:intergenic |
| GACTCGGATGCTCAATCTAC+GGG | 0.540156 | tig0019233:+105114 | Msa1371530:CDS |
| AGACTCGGATGCTCAATCTA+CGG | 0.545021 | tig0019233:+105113 | Msa1371530:CDS |
| AATATAAGTTAAGGGAGTAG+AGG | 0.546505 | tig0019233:-106396 | None:intergenic |
| CAAACGTTTGGCTTTAGCAA+GGG | 0.548018 | tig0019233:+106336 | Msa1371530:three_prime_UTR |
| GAAGGTGGAGCTAAGAGAGA+AGG | 0.552066 | tig0019233:-104454 | None:intergenic |
| CTTGGTGACTGTGCAGTTGA+AGG | 0.553984 | tig0019233:-104508 | None:intergenic |
| CGTAAGATCAGAACAAAAGC+AGG | 0.554346 | tig0019233:-106370 | None:intergenic |
| GTAAAGGATGCTGGTGAAGA+AGG | 0.554485 | tig0019233:-104472 | None:intergenic |
| GCGGGAGTTTCGCCCACAGT+GGG | 0.556115 | tig0019233:+104900 | Msa1371530:CDS |
| TCTCCAATATCAAGGAACTC+TGG | 0.557402 | tig0019233:+104850 | Msa1371530:CDS |
| GCCAGAGGTCAAGGGCATCA+TGG | 0.557610 | tig0019233:-105289 | None:intergenic |
| CATGTCAGATCATAAATCAC+CGG | 0.558274 | tig0019233:+105849 | Msa1371530:intron |
| AGTGAGCAAAAGGTACATCT+GGG | 0.558305 | tig0019233:-104714 | None:intergenic |
| GCAAACGTTTGGCTTTAGCA+AGG | 0.558524 | tig0019233:+106335 | Msa1371530:three_prime_UTR |
| TTATCAGGAATACGAGATGC+AGG | 0.558545 | tig0019233:-104361 | None:intergenic |
| CAAATGGGCCCCAAGTGGCT+GGG | 0.560270 | tig0019233:+104404 | Msa1371530:CDS |
| AATAAGATCCGGTCAAACAC+GGG | 0.563633 | tig0019233:-106243 | None:intergenic |
| ATTCATGGATCAATAAGATC+CGG | 0.564258 | tig0019233:-106254 | None:intergenic |
| AAAGGTACATCTGGGGAAGA+GGG | 0.565920 | tig0019233:-104706 | None:intergenic |
| CTGGACTCGCGTCTAATCGA+AGG | 0.566055 | tig0019233:-105401 | None:intergenic |
| TGCAGAGGTTGACTATAGAA+GGG | 0.566479 | tig0019233:+106002 | Msa1371530:CDS |
| TTCATCCAATGAAGATTCGA+CGG | 0.567083 | tig0019233:+103822 | None:intergenic |
| GACACTGCTTGAAGAAAACA+AGG | 0.568492 | tig0019233:-106283 | None:intergenic |
| CAATAAGATCCGGTCAAACA+CGG | 0.569320 | tig0019233:-106244 | None:intergenic |
| AATATGATTTGTCATGACTT+GGG | 0.569512 | tig0019233:+106050 | Msa1371530:exon |
| CCTGTATGTGATGGATATGA+AGG | 0.571427 | tig0019233:+105450 | Msa1371530:CDS |
| GTGAAATTTGAGAAGACTGG+AGG | 0.572005 | tig0019233:-104625 | None:intergenic |
| TCAAATACGATGTATGCGAC+TGG | 0.572329 | tig0019233:+104571 | Msa1371530:CDS |
| ACTACATATTCGCTCTACCC+TGG | 0.573659 | tig0019233:+104805 | Msa1371530:CDS |
| TCAGAGGACTGGGTCTGGGA+GGG | 0.576834 | tig0019233:+104954 | Msa1371530:CDS |
| TGTTTCAGTTCACAGAAAGG+TGG | 0.578020 | tig0019233:+104325 | Msa1371530:CDS |
| ATTCAAAGCTCATGAGACTC+AGG | 0.580037 | tig0019233:+105356 | Msa1371530:CDS |
| GCAGAATGTGTAAAGGATGC+TGG | 0.584993 | tig0019233:-104481 | None:intergenic |
| GTGGGCGAAACTCCCGCTCA+GGG | 0.587338 | tig0019233:-104894 | None:intergenic |
| GGGTTGACCAATCAAGTCAC+AGG | 0.587853 | tig0019233:+104424 | Msa1371530:CDS |
| ATCAGAGGACTGGGTCTGGG+AGG | 0.588077 | tig0019233:+104953 | Msa1371530:CDS |
| TAGAAGTCCTAAGCAAGATG+TGG | 0.589021 | tig0019233:+105164 | Msa1371530:CDS |
| TTGGTCAACCCAGCCACTTG+GGG | 0.591564 | tig0019233:-104412 | None:intergenic |
| ATATGCTCATGAAACACAGC+TGG | 0.591977 | tig0019233:+104597 | Msa1371530:CDS |
| ATTAAGTGTTTCAAAAGACT+CGG | 0.593462 | tig0019233:+105098 | Msa1371530:CDS |
| TGGGATCATCCAGAATCTGC+AGG | 0.595345 | tig0019233:+105950 | Msa1371530:CDS |
| TCTATAGTCAACCTCTGCAT+CGG | 0.596969 | tig0019233:-105998 | None:intergenic |
| CTCATCTGCACTGAAACCAA+AGG | 0.597006 | tig0019233:-105211 | None:intergenic |
| TTCCATCATTGATTTGCCAG+AGG | 0.599588 | tig0019233:-105304 | None:intergenic |
| GTGACTGTGCAGTTGAAGGA+AGG | 0.600512 | tig0019233:-104504 | None:intergenic |
| AGGAAGGGCAGAATGTGTAA+AGG | 0.600967 | tig0019233:-104488 | None:intergenic |
| CTGAAAATGGAAAATATCAG+AGG | 0.602081 | tig0019233:+104938 | Msa1371530:CDS |
| AGAATTGTGCATAGGTAGCA+GGG | 0.602738 | tig0019233:-105035 | None:intergenic |
| GAGCTGTTGCTACAATATCC+CGG | 0.605194 | tig0019233:-105868 | None:intergenic |
| GTTATCATGCTCCGATGCAG+AGG | 0.606978 | tig0019233:+105987 | Msa1371530:CDS |
| GGAGATATAAGGCTACTGGC+AGG | 0.608168 | tig0019233:-104832 | None:intergenic |
| CAAAGCTCATGAGACTCAGG+TGG | 0.609565 | tig0019233:+105359 | Msa1371530:CDS |
| AGAAGCTTGCGAGAAAGAAA+GGG | 0.612565 | tig0019233:+106027 | Msa1371530:CDS |
| GGAAGAAATAGAAGCTTACC+GGG | 0.612807 | tig0019233:+105185 | Msa1371530:CDS |
| TTAATCTGCCACCATTATGA+GGG | 0.614309 | tig0019233:-105080 | None:intergenic |
| ATTGATTTGCCAGAGGTCAA+GGG | 0.615854 | tig0019233:-105297 | None:intergenic |
| TATAAGTATTAGGAAGTCAA+CGG | 0.619865 | tig0019233:-103858 | None:intergenic |
| GGCTACTGGCAGGACTTCCA+GGG | 0.622814 | tig0019233:-104822 | None:intergenic |
| GTGGAAATGGACATCAGAGT+AGG | 0.623948 | tig0019233:+105136 | Msa1371530:CDS |
| GTCCAAATAGAATTGTGCAT+AGG | 0.628022 | tig0019233:-105043 | None:intergenic |
| AGCGGGAGTTTCGCCCACAG+TGG | 0.628097 | tig0019233:+104899 | Msa1371530:CDS |
| CCACCATTATGAGGGAATGG+AGG | 0.638910 | tig0019233:-105072 | None:intergenic |
| CCTCCATTCCCTCATAATGG+TGG | 0.644991 | tig0019233:+105072 | Msa1371530:CDS |
| AAGGATGCTGGTGAAGAAGG+TGG | 0.646683 | tig0019233:-104469 | None:intergenic |
| AAAGCTCATGAGACTCAGGT+GGG | 0.647953 | tig0019233:+105360 | Msa1371530:CDS |
| ATGTCAGATCATAAATCACC+GGG | 0.648766 | tig0019233:+105850 | Msa1371530:intron |
| GTTAAGTGAGCCAACTCTGG+GGG | 0.650031 | tig0019233:-104679 | None:intergenic |
| ACAGTGATGAATCCCACTGT+GGG | 0.651266 | tig0019233:-104912 | None:intergenic |
| TCGGATGCTCAATCTACGGG+TGG | 0.656294 | tig0019233:+105117 | Msa1371530:CDS |
| TGTCAACCTCTTTCCCTGAG+CGG | 0.657293 | tig0019233:+104881 | Msa1371530:CDS |
| GCAGAGGTTGACTATAGAAG+GGG | 0.658601 | tig0019233:+106003 | Msa1371530:CDS |
| ATAAGATCCGGTCAAACACG+GGG | 0.659713 | tig0019233:-106242 | None:intergenic |
| TATAACCACCAGTCAATACG+TGG | 0.662605 | tig0019233:+105236 | Msa1371530:CDS |
| TCTGCAGGAAATATCAAATG+GGG | 0.670683 | tig0019233:+105965 | Msa1371530:CDS |
| TCAACCAAATGGGCCCCAAG+TGG | 0.677451 | tig0019233:+104399 | Msa1371530:CDS |
| AATCTCCACGTATTGACTGG+TGG | 0.682416 | tig0019233:-105241 | None:intergenic |
| TGACTGTGCAGTTGAAGGAA+GGG | 0.689565 | tig0019233:-104503 | None:intergenic |
| TACAGTGATGAATCCCACTG+TGG | 0.717481 | tig0019233:-104913 | None:intergenic |
| TGTTAAGTGAGCCAACTCTG+GGG | 0.718392 | tig0019233:-104680 | None:intergenic |
| GTGAGCAAAAGGTACATCTG+GGG | 0.723428 | tig0019233:-104713 | None:intergenic |
| TTATCTGCAAACTCACCTGG+CGG | 0.723487 | tig0019233:+104544 | Msa1371530:CDS |
| CATCCAATGAAGATTCGACG+GGG | 0.734426 | tig0019233:+103824 | None:intergenic |
| ACACTGCTTGAAGAAAACAA+GGG | 0.754124 | tig0019233:-106282 | None:intergenic |
| TAAGATCCGGTCAAACACGG+GGG | 0.764107 | tig0019233:-106241 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGAAATTTTAAGCTTTTTTA+GGG | - | tig0019233:104155-104174 | None:intergenic | 15.0% |
| !! | AACATATTTAAGGATAAAAT+TGG | - | tig0019233:105818-105837 | None:intergenic | 15.0% |
| !! | AGAAAGATTGTATAAGTATT+AGG | - | tig0019233:103871-103890 | None:intergenic | 20.0% |
| !!! | CTGAAATTTTAAGCTTTTTT+AGG | - | tig0019233:104156-104175 | None:intergenic | 20.0% |
| !!! | TATGTTGTAGTTACTTTTAA+TGG | + | tig0019233:105662-105681 | Msa1371530:intron | 20.0% |
| !! | TGAAGATATATTCTCAAAAA+TGG | + | tig0019233:105930-105949 | Msa1371530:CDS | 20.0% |
| !! | GAAGATATATTCTCAAAAAT+GGG | + | tig0019233:105931-105950 | Msa1371530:CDS | 20.0% |
| !!! | GCGGTTTTTTAAATATAAAA+AGG | - | tig0019233:106128-106147 | None:intergenic | 20.0% |
| !!! | TTAATGTTTTGACTTTTAAG+TGG | + | tig0019233:106310-106329 | Msa1371530:three_prime_UTR | 20.0% |
| !! | GTTGTTGAAATATAAGTTAA+GGG | - | tig0019233:106407-106426 | None:intergenic | 20.0% |
| !! | AGTTGTTGAAATATAAGTTA+AGG | - | tig0019233:106408-106427 | None:intergenic | 20.0% |
| ! | TATAAGTATTAGGAAGTCAA+CGG | - | tig0019233:103861-103880 | None:intergenic | 25.0% |
| !! | TACAATCTTTCTCTTTTCTT+CGG | + | tig0019233:103879-103898 | Msa1371530:CDS | 25.0% |
| ! | TTGAAGAGATTAATATGTGT+AGG | - | tig0019233:103929-103948 | None:intergenic | 25.0% |
| ! | TATTAACTGTTCCAAACATA+TGG | - | tig0019233:104078-104097 | None:intergenic | 25.0% |
| !! | ATATGTTTGGAACAGTTAAT+AGG | + | tig0019233:104077-104096 | Msa1371530:intron | 25.0% |
| ! | GATAATGACAAAAAACAACT+TGG | - | tig0019233:104529-104548 | None:intergenic | 25.0% |
| ! | ATTAAGTGTTTCAAAAGACT+CGG | + | tig0019233:105098-105117 | Msa1371530:CDS | 25.0% |
| ! | TTGAATTCTTTCATCAATGA+AGG | - | tig0019233:105342-105361 | None:intergenic | 25.0% |
| ! | TATTACATCTTGAGAAATTG+TGG | + | tig0019233:105508-105527 | Msa1371530:intron | 25.0% |
| !!! | TACTCTTATTTTGAAAGAGA+GGG | - | tig0019233:105722-105741 | None:intergenic | 25.0% |
| ! | GCAAGAAAGAAACATATTTA+AGG | - | tig0019233:105828-105847 | None:intergenic | 25.0% |
| !! | AATATGATTTGTCATGACTT+GGG | + | tig0019233:106050-106069 | Msa1371530:exon | 25.0% |
| !!! | TCTTTCTTTCCTTCTTTTTT+TGG | - | tig0019233:106150-106169 | None:intergenic | 25.0% |
| ! | AAAAAGAAGGAAAGAAAGAA+AGG | + | tig0019233:106151-106170 | Msa1371530:three_prime_UTR | 25.0% |
| !!! | ACATACAACTTTTGTTGTAT+TGG | + | tig0019233:106432-106451 | Msa1371530:three_prime_UTR | 25.0% |
| !!! | CATACAACTTTTGTTGTATT+GGG | + | tig0019233:106433-106452 | Msa1371530:three_prime_UTR | 25.0% |
| ! | ACAATCTTTCTCTTTTCTTC+GGG | + | tig0019233:103880-103899 | Msa1371530:CDS | 30.0% |
| ! | TTTTCGTAGAAAATTGCATG+TGG | + | tig0019233:103952-103971 | Msa1371530:intron | 30.0% |
| !!! | GTGTTTTAGGATCTAAGTTT+TGG | - | tig0019233:103979-103998 | None:intergenic | 30.0% |
| ! | GAAGTATTTAGCCATATGTT+TGG | + | tig0019233:104064-104083 | Msa1371530:intron | 30.0% |
| TCTCGTATTCCTGATAATAA+TGG | + | tig0019233:104367-104386 | Msa1371530:CDS | 30.0% | |
| TCCTTGATATTGGAGATATA+AGG | - | tig0019233:104846-104865 | None:intergenic | 30.0% | |
| ! | CTCTGATATTTTCCATTTTC+AGG | - | tig0019233:104940-104959 | None:intergenic | 30.0% |
| CTGAAAATGGAAAATATCAG+AGG | + | tig0019233:104938-104957 | Msa1371530:CDS | 30.0% | |
| TACCTATGCACAATTCTATT+TGG | + | tig0019233:105041-105060 | Msa1371530:CDS | 30.0% | |
| AATCAAATTCCTGTATGTGA+TGG | + | tig0019233:105441-105460 | Msa1371530:CDS | 30.0% | |
| ! | ATGAAGGTATGCTGTAAAAA+CGG | + | tig0019233:105466-105485 | Msa1371530:intron | 30.0% |
| AAAGTAACTACAACATACCA+AGG | - | tig0019233:105659-105678 | None:intergenic | 30.0% | |
| !!! | CTACTCTTATTTTGAAAGAG+AGG | - | tig0019233:105723-105742 | None:intergenic | 30.0% |
| AATCTGCAGGAAATATCAAA+TGG | + | tig0019233:105963-105982 | Msa1371530:CDS | 30.0% | |
| ATCTGCAGGAAATATCAAAT+GGG | + | tig0019233:105964-105983 | Msa1371530:CDS | 30.0% | |
| ! | GAATATGATTTGTCATGACT+TGG | + | tig0019233:106049-106068 | Msa1371530:exon | 30.0% |
| AAAAAACCGCCAAAAAAAGA+AGG | + | tig0019233:106138-106157 | Msa1371530:three_prime_UTR | 30.0% | |
| !!! | TTCTTTCCTTCTTTTTTTGG+CGG | - | tig0019233:106147-106166 | None:intergenic | 30.0% |
| AAGGAAAGAAACTCTTTACT+TGG | + | tig0019233:106170-106189 | Msa1371530:three_prime_UTR | 30.0% | |
| ATTCATGGATCAATAAGATC+CGG | - | tig0019233:106257-106276 | None:intergenic | 30.0% | |
| AATATAAGTTAAGGGAGTAG+AGG | - | tig0019233:106399-106418 | None:intergenic | 30.0% | |
| ! | AAAGCTACTCACTGTGTTTT+AGG | - | tig0019233:103992-104011 | None:intergenic | 35.0% |
| ! | ACAGTGAGTAGCTTTTATCT+TGG | + | tig0019233:103997-104016 | Msa1371530:intron | 35.0% |
| TAGGTAGAAAGATGTTTGAG+AGG | + | tig0019233:104096-104115 | Msa1371530:intron | 35.0% | |
| TGTCAATGCAAGTCAAGAAA+GGG | - | tig0019233:104268-104287 | None:intergenic | 35.0% | |
| ! | TGCATTGACAGAGAAAAAGA+TGG | + | tig0019233:104278-104297 | Msa1371530:intron | 35.0% |
| ! | GCATTGACAGAGAAAAAGAT+GGG | + | tig0019233:104279-104298 | Msa1371530:intron | 35.0% |
| CATTGACAGAGAAAAAGATG+GGG | + | tig0019233:104280-104299 | Msa1371530:intron | 35.0% | |
| ! | TCTTGTTTCAGTTCACAGAA+AGG | + | tig0019233:104322-104341 | Msa1371530:CDS | 35.0% |
| GTAGTGAAATTTGAGAAGAC+TGG | - | tig0019233:104631-104650 | None:intergenic | 35.0% | |
| GATGTTAGAAAGTGAGCAAA+AGG | - | tig0019233:104727-104746 | None:intergenic | 35.0% | |
| TCCTCAGCAAATCTCAAAAA+TGG | + | tig0019233:104745-104764 | Msa1371530:CDS | 35.0% | |
| !!! | ACCATTTTTGAGATTTGCTG+AGG | - | tig0019233:104749-104768 | None:intergenic | 35.0% |
| TCAGCAAATCTCAAAAATGG+TGG | + | tig0019233:104748-104767 | Msa1371530:CDS | 35.0% | |
| AAATCTCAAAAATGGTGGCA+AGG | + | tig0019233:104753-104772 | Msa1371530:CDS | 35.0% | |
| AATCTCAAAAATGGTGGCAA+GGG | + | tig0019233:104754-104773 | Msa1371530:CDS | 35.0% | |
| TATTGGAGATATAAGGCTAC+TGG | - | tig0019233:104839-104858 | None:intergenic | 35.0% | |
| GCCTTATATCTCCAATATCA+AGG | + | tig0019233:104842-104861 | Msa1371530:CDS | 35.0% | |
| TCATCACTGTATCCTGAAAA+TGG | + | tig0019233:104925-104944 | Msa1371530:CDS | 35.0% | |
| AATGGAAAATATCAGAGGAC+TGG | + | tig0019233:104943-104962 | Msa1371530:CDS | 35.0% | |
| ATGGAAAATATCAGAGGACT+GGG | + | tig0019233:104944-104963 | Msa1371530:CDS | 35.0% | |
| CGACACTAATGATGTTACTA+TGG | + | tig0019233:104987-105006 | Msa1371530:CDS | 35.0% | |
| GTCCAAATAGAATTGTGCAT+AGG | - | tig0019233:105046-105065 | None:intergenic | 35.0% | |
| TTAATCTGCCACCATTATGA+GGG | - | tig0019233:105083-105102 | None:intergenic | 35.0% | |
| ATTTCTTCCACATCTTGCTT+AGG | - | tig0019233:105174-105193 | None:intergenic | 35.0% | |
| TGGAAGAAATAGAAGCTTAC+CGG | + | tig0019233:105184-105203 | Msa1371530:CDS | 35.0% | |
| ! | TTTGAAGTTGCTCTTCTCTA+TGG | - | tig0019233:105583-105602 | None:intergenic | 35.0% |
| CATGTCAGATCATAAATCAC+CGG | + | tig0019233:105849-105868 | Msa1371530:intron | 35.0% | |
| ATGTCAGATCATAAATCACC+GGG | + | tig0019233:105850-105869 | Msa1371530:intron | 35.0% | |
| ! | TCCATGAGAGTATGATTATC+AGG | - | tig0019233:105907-105926 | None:intergenic | 35.0% |
| TTGATATTTCCTGCAGATTC+TGG | - | tig0019233:105962-105981 | None:intergenic | 35.0% | |
| TCTGCAGGAAATATCAAATG+GGG | + | tig0019233:105965-105984 | Msa1371530:CDS | 35.0% | |
| ACTTGGAGTTGTCTAATAGA+TGG | + | tig0019233:106187-106206 | Msa1371530:three_prime_UTR | 35.0% | |
| AAAACAAGGGACTACATTCA+TGG | - | tig0019233:106272-106291 | None:intergenic | 35.0% | |
| ACACTGCTTGAAGAAAACAA+GGG | - | tig0019233:106285-106304 | None:intergenic | 35.0% | |
| TTTAAGTGGATGCAAACGTT+TGG | + | tig0019233:106324-106343 | Msa1371530:three_prime_UTR | 35.0% | |
| !! | CTTTTCTTCGGGTTTGTGAT+TGG | + | tig0019233:103891-103910 | Msa1371530:intron | 40.0% |
| CTGTCAATGCAAGTCAAGAA+AGG | - | tig0019233:104269-104288 | None:intergenic | 40.0% | |
| AAAAAGATGGGGAGGTTGTT+TGG | + | tig0019233:104291-104310 | Msa1371530:CDS | 40.0% | |
| AAAAGATGGGGAGGTTGTTT+GGG | + | tig0019233:104292-104311 | Msa1371530:CDS | 40.0% | |
| TGTTTCAGTTCACAGAAAGG+TGG | + | tig0019233:104325-104344 | Msa1371530:CDS | 40.0% | |
| GTTTCAGTTCACAGAAAGGT+GGG | + | tig0019233:104326-104345 | Msa1371530:CDS | 40.0% | |
| TTATCAGGAATACGAGATGC+AGG | - | tig0019233:104364-104383 | None:intergenic | 40.0% | |
| CTGGCTGATCCATTATTATC+AGG | - | tig0019233:104379-104398 | None:intergenic | 40.0% | |
| TCATTATCTGCAAACTCACC+TGG | + | tig0019233:104541-104560 | Msa1371530:CDS | 40.0% | |
| GTCGCATACATCGTATTTGA+AGG | - | tig0019233:104571-104590 | None:intergenic | 40.0% | |
| TCAAATACGATGTATGCGAC+TGG | + | tig0019233:104571-104590 | Msa1371530:CDS | 40.0% | |
| AGCTGTGTTTCATGAGCATA+TGG | - | tig0019233:104598-104617 | None:intergenic | 40.0% | |
| ATATGCTCATGAAACACAGC+TGG | + | tig0019233:104597-104616 | Msa1371530:CDS | 40.0% | |
| GTGAAATTTGAGAAGACTGG+AGG | - | tig0019233:104628-104647 | None:intergenic | 40.0% | |
| TTGTTAAGTGAGCCAACTCT+GGG | - | tig0019233:104684-104703 | None:intergenic | 40.0% | |
| ! | AGTGAGCAAAAGGTACATCT+GGG | - | tig0019233:104717-104736 | None:intergenic | 40.0% |
| ! | AAGTGAGCAAAAGGTACATC+TGG | - | tig0019233:104718-104737 | None:intergenic | 40.0% |
| TCTCCAATATCAAGGAACTC+TGG | + | tig0019233:104850-104869 | Msa1371530:CDS | 40.0% | |
| TCACCAGAGTTCCTTGATAT+TGG | - | tig0019233:104856-104875 | None:intergenic | 40.0% | |
| TGATGTTACTATGGCATCAC+AGG | + | tig0019233:104996-105015 | Msa1371530:CDS | 40.0% | |
| AGAATTGTGCATAGGTAGCA+GGG | - | tig0019233:105038-105057 | None:intergenic | 40.0% | |
| TAGAATTGTGCATAGGTAGC+AGG | - | tig0019233:105039-105058 | None:intergenic | 40.0% | |
| ! | TATGAGGGAATGGAGGATTT+TGG | - | tig0019233:105068-105087 | None:intergenic | 40.0% |
| AATCCTCCATTCCCTCATAA+TGG | + | tig0019233:105069-105088 | Msa1371530:CDS | 40.0% | |
| CTTAATCTGCCACCATTATG+AGG | - | tig0019233:105084-105103 | None:intergenic | 40.0% | |
| TCTTGCTTAGGACTTCTAGA+AGG | - | tig0019233:105162-105181 | None:intergenic | 40.0% | |
| TAGAAGTCCTAAGCAAGATG+TGG | + | tig0019233:105164-105183 | Msa1371530:CDS | 40.0% | |
| GGAAGAAATAGAAGCTTACC+GGG | + | tig0019233:105185-105204 | Msa1371530:CDS | 40.0% | |
| TATAACCACCAGTCAATACG+TGG | + | tig0019233:105236-105255 | Msa1371530:CDS | 40.0% | |
| ! | AGAAATCTCCACGTATTGAC+TGG | - | tig0019233:105247-105266 | None:intergenic | 40.0% |
| CGTGGAGATTTCTGATGTAA+TGG | + | tig0019233:105254-105273 | Msa1371530:CDS | 40.0% | |
| !! | ATTGATTTGCCAGAGGTCAA+GGG | - | tig0019233:105300-105319 | None:intergenic | 40.0% |
| !! | TTCCATCATTGATTTGCCAG+AGG | - | tig0019233:105307-105326 | None:intergenic | 40.0% |
| ATTCAAAGCTCATGAGACTC+AGG | + | tig0019233:105356-105375 | Msa1371530:CDS | 40.0% | |
| CCTTCATATCCATCACATAC+AGG | - | tig0019233:105453-105472 | None:intergenic | 40.0% | |
| !! | CCTGTATGTGATGGATATGA+AGG | + | tig0019233:105450-105469 | Msa1371530:CDS | 40.0% |
| CATCTCAATAACTAGAGCCT+TGG | + | tig0019233:105639-105658 | Msa1371530:intron | 40.0% | |
| GCCTGATAATCATACTCTCA+TGG | + | tig0019233:105903-105922 | Msa1371530:CDS | 40.0% | |
| TCTATAGTCAACCTCTGCAT+CGG | - | tig0019233:106001-106020 | None:intergenic | 40.0% | |
| ATGCAGAGGTTGACTATAGA+AGG | + | tig0019233:106001-106020 | Msa1371530:CDS | 40.0% | |
| TGCAGAGGTTGACTATAGAA+GGG | + | tig0019233:106002-106021 | Msa1371530:CDS | 40.0% | |
| AGAAGCTTGCGAGAAAGAAA+GGG | + | tig0019233:106027-106046 | Msa1371530:CDS | 40.0% | |
| AATAAGATCCGGTCAAACAC+GGG | - | tig0019233:106246-106265 | None:intergenic | 40.0% | |
| CAATAAGATCCGGTCAAACA+CGG | - | tig0019233:106247-106266 | None:intergenic | 40.0% | |
| GACACTGCTTGAAGAAAACA+AGG | - | tig0019233:106286-106305 | None:intergenic | 40.0% | |
| !! | CAAACGTTTGGCTTTAGCAA+GGG | + | tig0019233:106336-106355 | Msa1371530:three_prime_UTR | 40.0% |
| CGTAAGATCAGAACAAAAGC+AGG | - | tig0019233:106373-106392 | None:intergenic | 40.0% | |
| CTTGGCATGACTAGTAGATG+CGG | + | tig0019233:104015-104034 | Msa1371530:intron | 45.0% | |
| TGACAGAGAAAAAGATGGGG+AGG | + | tig0019233:104283-104302 | Msa1371530:intron | 45.0% | |
| GATCAGCCAGTCAACCAAAT+GGG | + | tig0019233:104389-104408 | Msa1371530:CDS | 45.0% | |
| AGCTATGCCTGTGACTTGAT+TGG | - | tig0019233:104434-104453 | None:intergenic | 45.0% | |
| GTAAAGGATGCTGGTGAAGA+AGG | - | tig0019233:104475-104494 | None:intergenic | 45.0% | |
| GCAGAATGTGTAAAGGATGC+TGG | - | tig0019233:104484-104503 | None:intergenic | 45.0% | |
| AGGAAGGGCAGAATGTGTAA+AGG | - | tig0019233:104491-104510 | None:intergenic | 45.0% | |
| TGACTGTGCAGTTGAAGGAA+GGG | - | tig0019233:104506-104525 | None:intergenic | 45.0% | |
| TTATCTGCAAACTCACCTGG+CGG | + | tig0019233:104544-104563 | Msa1371530:CDS | 45.0% | |
| TGTTAAGTGAGCCAACTCTG+GGG | - | tig0019233:104683-104702 | None:intergenic | 45.0% | |
| GTTGTTAAGTGAGCCAACTC+TGG | - | tig0019233:104685-104704 | None:intergenic | 45.0% | |
| ! | AAAGGTACATCTGGGGAAGA+GGG | - | tig0019233:104709-104728 | None:intergenic | 45.0% |
| ! | AAAAGGTACATCTGGGGAAG+AGG | - | tig0019233:104710-104729 | None:intergenic | 45.0% |
| ! | GTGAGCAAAAGGTACATCTG+GGG | - | tig0019233:104716-104735 | None:intergenic | 45.0% |
| ACTACATATTCGCTCTACCC+TGG | + | tig0019233:104805-104824 | Msa1371530:CDS | 45.0% | |
| ACAGTGATGAATCCCACTGT+GGG | - | tig0019233:104915-104934 | None:intergenic | 45.0% | |
| TACAGTGATGAATCCCACTG+TGG | - | tig0019233:104916-104935 | None:intergenic | 45.0% | |
| AAATATCAGAGGACTGGGTC+TGG | + | tig0019233:104949-104968 | Msa1371530:CDS | 45.0% | |
| AATATCAGAGGACTGGGTCT+GGG | + | tig0019233:104950-104969 | Msa1371530:CDS | 45.0% | |
| AGACTCGGATGCTCAATCTA+CGG | + | tig0019233:105113-105132 | Msa1371530:CDS | 45.0% | |
| GTGGAAATGGACATCAGAGT+AGG | + | tig0019233:105136-105155 | Msa1371530:CDS | 45.0% | |
| CTCATCTGCACTGAAACCAA+AGG | - | tig0019233:105214-105233 | None:intergenic | 45.0% | |
| !! | AATCTCCACGTATTGACTGG+TGG | - | tig0019233:105244-105263 | None:intergenic | 45.0% |
| !! | CATTGATTTGCCAGAGGTCA+AGG | - | tig0019233:105301-105320 | None:intergenic | 45.0% |
| GACCTCTGGCAAATCAATGA+TGG | + | tig0019233:105302-105321 | Msa1371530:CDS | 45.0% | |
| AAAGCTCATGAGACTCAGGT+GGG | + | tig0019233:105360-105379 | Msa1371530:CDS | 45.0% | |
| TTCTTTGCTTGCTTGCCAAC+TGG | - | tig0019233:105423-105442 | None:intergenic | 45.0% | |
| GAGCTGTTGCTACAATATCC+CGG | - | tig0019233:105871-105890 | None:intergenic | 45.0% | |
| GGATATTGTAGCAACAGCTC+TGG | + | tig0019233:105871-105890 | Msa1371530:CDS | 45.0% | |
| GCAGAGGTTGACTATAGAAG+GGG | + | tig0019233:106003-106022 | Msa1371530:CDS | 45.0% | |
| CAGAAGCTTGCGAGAAAGAA+AGG | + | tig0019233:106026-106045 | Msa1371530:CDS | 45.0% | |
| GGACAGAGTCGGTTATATCT+AGG | - | tig0019233:106223-106242 | None:intergenic | 45.0% | |
| ATAAGATCCGGTCAAACACG+GGG | - | tig0019233:106245-106264 | None:intergenic | 45.0% | |
| !! | GCAAACGTTTGGCTTTAGCA+AGG | + | tig0019233:106335-106354 | Msa1371530:three_prime_UTR | 45.0% |
| !!! | TTATTTTATAAAAGATAAAA+TGG | - | tig0019233:105781-105800 | None:intergenic | 5.0% |
| GGATCAGCCAGTCAACCAAA+TGG | + | tig0019233:104388-104407 | Msa1371530:CDS | 50.0% | |
| ATTGGTCAACCCAGCCACTT+GGG | - | tig0019233:104416-104435 | None:intergenic | 50.0% | |
| GGGTTGACCAATCAAGTCAC+AGG | + | tig0019233:104424-104443 | Msa1371530:CDS | 50.0% | |
| GAAGGTGGAGCTAAGAGAGA+AGG | - | tig0019233:104457-104476 | None:intergenic | 50.0% | |
| AAGGATGCTGGTGAAGAAGG+TGG | - | tig0019233:104472-104491 | None:intergenic | 50.0% | |
| GTGACTGTGCAGTTGAAGGA+AGG | - | tig0019233:104507-104526 | None:intergenic | 50.0% | |
| ! | CTTGGTGACTGTGCAGTTGA+AGG | - | tig0019233:104511-104530 | None:intergenic | 50.0% |
| ATCGTATTTGAAGGACCGCC+AGG | - | tig0019233:104562-104581 | None:intergenic | 50.0% | |
| GAGAGGAGCAGTAGATGGTT+CGG | - | tig0019233:104653-104672 | None:intergenic | 50.0% | |
| GTTAAGTGAGCCAACTCTGG+GGG | - | tig0019233:104682-104701 | None:intergenic | 50.0% | |
| GGAGATATAAGGCTACTGGC+AGG | - | tig0019233:104835-104854 | None:intergenic | 50.0% | |
| TGTCAACCTCTTTCCCTGAG+CGG | + | tig0019233:104881-104900 | Msa1371530:CDS | 50.0% | |
| CCACCATTATGAGGGAATGG+AGG | - | tig0019233:105075-105094 | None:intergenic | 50.0% | |
| CCTCCATTCCCTCATAATGG+TGG | + | tig0019233:105072-105091 | Msa1371530:CDS | 50.0% | |
| CTGCCACCATTATGAGGGAA+TGG | - | tig0019233:105078-105097 | None:intergenic | 50.0% | |
| GACTCGGATGCTCAATCTAC+GGG | + | tig0019233:105114-105133 | Msa1371530:CDS | 50.0% | |
| GCTCAATCTACGGGTGGAAA+TGG | + | tig0019233:105123-105142 | Msa1371530:CDS | 50.0% | |
| CACTGAAACCAAAGGATGCC+CGG | - | tig0019233:105206-105225 | None:intergenic | 50.0% | |
| CAAAGCTCATGAGACTCAGG+TGG | + | tig0019233:105359-105378 | Msa1371530:CDS | 50.0% | |
| TGGGATCATCCAGAATCTGC+AGG | + | tig0019233:105950-105969 | Msa1371530:CDS | 50.0% | |
| GTTATCATGCTCCGATGCAG+AGG | + | tig0019233:105987-106006 | Msa1371530:CDS | 50.0% | |
| TAAGATCCGGTCAAACACGG+GGG | - | tig0019233:106244-106263 | None:intergenic | 50.0% | |
| TTGGGGCCCATTTGGTTGAC+TGG | - | tig0019233:104398-104417 | None:intergenic | 55.0% | |
| TCAACCAAATGGGCCCCAAG+TGG | + | tig0019233:104399-104418 | Msa1371530:CDS | 55.0% | |
| TTGGTCAACCCAGCCACTTG+GGG | - | tig0019233:104415-104434 | None:intergenic | 55.0% | |
| ! | GATTGGTCAACCCAGCCACT+TGG | - | tig0019233:104417-104436 | None:intergenic | 55.0% |
| GGAGTGAGAGGAGCAGTAGA+TGG | - | tig0019233:104658-104677 | None:intergenic | 55.0% | |
| GTCAACCTCTTTCCCTGAGC+GGG | + | tig0019233:104882-104901 | Msa1371530:CDS | 55.0% | |
| AAACTCCCGCTCAGGGAAAG+AGG | - | tig0019233:104890-104909 | None:intergenic | 55.0% | |
| TCGGATGCTCAATCTACGGG+TGG | + | tig0019233:105117-105136 | Msa1371530:CDS | 55.0% | |
| GAAGCTTACCGGGCATCCTT+TGG | + | tig0019233:105195-105214 | Msa1371530:CDS | 55.0% | |
| ACCATGATGCCCTTGACCTC+TGG | + | tig0019233:105288-105307 | Msa1371530:CDS | 55.0% | |
| CTGGACTCGCGTCTAATCGA+AGG | - | tig0019233:105404-105423 | None:intergenic | 55.0% | |
| CGATTAGACGCGAGTCCAGT+TGG | + | tig0019233:105405-105424 | Msa1371530:CDS | 55.0% | |
| TCAAACACGGGGGACAGAGT+CGG | - | tig0019233:106234-106253 | None:intergenic | 55.0% | |
| CAAATGGGCCCCAAGTGGCT+GGG | + | tig0019233:104404-104423 | Msa1371530:CDS | 60.0% | |
| ! | AACTCTGGGGGAGGAGTGAG+AGG | - | tig0019233:104670-104689 | None:intergenic | 60.0% |
| TCTCACTCCTCCCCCAGAGT+TGG | + | tig0019233:104669-104688 | Msa1371530:CDS | 60.0% | |
| ! | AAGTGAGCCAACTCTGGGGG+AGG | - | tig0019233:104679-104698 | None:intergenic | 60.0% |
| GGCTACTGGCAGGACTTCCA+GGG | - | tig0019233:104825-104844 | None:intergenic | 60.0% | |
| AGGCTACTGGCAGGACTTCC+AGG | - | tig0019233:104826-104845 | None:intergenic | 60.0% | |
| ATCAGAGGACTGGGTCTGGG+AGG | + | tig0019233:104953-104972 | Msa1371530:CDS | 60.0% | |
| TCAGAGGACTGGGTCTGGGA+GGG | + | tig0019233:104954-104973 | Msa1371530:CDS | 60.0% | |
| ACTGGGTCTGGGAGGGTTTC+TGG | + | tig0019233:104961-104980 | Msa1371530:CDS | 60.0% | |
| CTGGGTCTGGGAGGGTTTCT+GGG | + | tig0019233:104962-104981 | Msa1371530:CDS | 60.0% | |
| !! | GCCAGAGGTCAAGGGCATCA+TGG | - | tig0019233:105292-105311 | None:intergenic | 60.0% |
| CTCTGTCCCCCGTGTTTGAC+CGG | + | tig0019233:106235-106254 | Msa1371530:three_prime_UTR | 60.0% | |
| CCAGCCACTTGGGGCCCATT+TGG | - | tig0019233:104406-104425 | None:intergenic | 65.0% | |
| CCAAATGGGCCCCAAGTGGC+TGG | + | tig0019233:104403-104422 | Msa1371530:CDS | 65.0% | |
| GTGGGCGAAACTCCCGCTCA+GGG | - | tig0019233:104897-104916 | None:intergenic | 65.0% | |
| TGTGGGCGAAACTCCCGCTC+AGG | - | tig0019233:104898-104917 | None:intergenic | 65.0% | |
| AGCGGGAGTTTCGCCCACAG+TGG | + | tig0019233:104899-104918 | Msa1371530:CDS | 65.0% | |
| GCGGGAGTTTCGCCCACAGT+GGG | + | tig0019233:104900-104919 | Msa1371530:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0019233 | gene | 103830 | 106464 | 103830 | ID=Msa1371530;Name=Msa1371530 |
| tig0019233 | mRNA | 103830 | 106464 | 103830 | ID=Msa1371530-mRNA-1;Parent=Msa1371530;Name=Msa1371530-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|0.5|0.66|1|1|1|3|408|484 |
| tig0019233 | exon | 103830 | 103901 | 103830 | ID=Msa1371530-mRNA-1:exon:2305;Parent=Msa1371530-mRNA-1 |
| tig0019233 | exon | 104289 | 105471 | 104289 | ID=Msa1371530-mRNA-1:exon:2306;Parent=Msa1371530-mRNA-1 |
| tig0019233 | exon | 105857 | 106464 | 105857 | ID=Msa1371530-mRNA-1:exon:2307;Parent=Msa1371530-mRNA-1 |
| tig0019233 | CDS | 103830 | 103901 | 103830 | ID=Msa1371530-mRNA-1:cds;Parent=Msa1371530-mRNA-1 |
| tig0019233 | CDS | 104289 | 105471 | 104289 | ID=Msa1371530-mRNA-1:cds;Parent=Msa1371530-mRNA-1 |
| tig0019233 | CDS | 105857 | 106056 | 105857 | ID=Msa1371530-mRNA-1:cds;Parent=Msa1371530-mRNA-1 |
| tig0019233 | three_prime_UTR | 106057 | 106464 | 106057 | ID=Msa1371530-mRNA-1:three_prime_utr;Parent=Msa1371530-mRNA-1 |
| Gene Sequence |
| Protein sequence |
