Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0138350 | sp|Q9SRE5|Y1666_ARATH | 59.267 | 464 | 138 | 10 | 24 | 482 | 7 | 424 | 2.45e-169 | 487 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0138350 | A0A072VQ62 | 98.347 | 484 | 8 | 0 | 1 | 484 | 1 | 484 | 0.0 | 989 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0109730 | Msa0138350 | 0.801900 | 7.238532e-49 | -8.615850e-47 |
| Msa0138350 | Msa0147970 | 0.976171 | 2.559947e-141 | -8.615850e-47 |
| Msa0138350 | Msa0173380 | 0.811400 | 7.136194e-51 | -8.615850e-47 |
| Msa0138350 | Msa0221460 | -0.806357 | 8.554746e-50 | -8.615850e-47 |
| Msa0138350 | Msa0244820 | -0.802911 | 4.481033e-49 | -8.615850e-47 |
| Msa0138350 | Msa0300670 | -0.814495 | 1.496855e-51 | -8.615850e-47 |
| Msa0138350 | Msa0337760 | -0.804908 | 1.723733e-49 | -8.615850e-47 |
| Msa0138350 | Msa0430040 | -0.808628 | 2.820863e-50 | -8.615850e-47 |
| Msa0138350 | Msa0432200 | 0.805857 | 1.089991e-49 | -8.615850e-47 |
| Msa0138350 | Msa0481050 | -0.806784 | 6.951889e-50 | -8.615850e-47 |
| Msa0138350 | Msa0521060 | 0.816837 | 4.501728e-52 | -8.615850e-47 |
| Msa0138350 | Msa0527200 | 0.993637 | 3.879747e-201 | -8.615850e-47 |
| Msa0138350 | Msa0541880 | 0.841238 | 5.363420e-58 | -8.615850e-47 |
| Msa0138350 | Msa0541940 | 0.843416 | 1.419930e-58 | -8.615850e-47 |
| Msa0138350 | Msa0571350 | 0.820184 | 7.845018e-53 | -8.615850e-47 |
| Msa0138350 | Msa0575950 | 0.813269 | 2.787871e-51 | -8.615850e-47 |
| Msa0138350 | Msa0587180 | 0.809675 | 1.682841e-50 | -8.615850e-47 |
| Msa0138350 | Msa0660260 | 0.810954 | 8.913908e-51 | -8.615850e-47 |
| Msa0138350 | Msa0673940 | 0.805470 | 1.314627e-49 | -8.615850e-47 |
| Msa0138350 | Msa0685610 | 0.848171 | 7.263576e-60 | -8.615850e-47 |
| Msa0138350 | Msa0831820 | 0.805472 | 1.312950e-49 | -8.615850e-47 |
| Msa0138350 | Msa0852620 | 0.802599 | 5.197290e-49 | -8.615850e-47 |
| Msa0138350 | Msa0930950 | -0.810182 | 1.309186e-50 | -8.615850e-47 |
| Msa0138350 | Msa0970040 | 0.830095 | 3.560634e-55 | -8.615850e-47 |
| Msa0138350 | Msa0970100 | 0.803918 | 2.771924e-49 | -8.615850e-47 |
| Msa0138350 | Msa1008850 | 0.831894 | 1.288797e-55 | -8.615850e-47 |
| Msa0138350 | Msa1026710 | 0.834881 | 2.318559e-56 | -8.615850e-47 |
| Msa0138350 | Msa1033420 | 0.805337 | 1.401506e-49 | -8.615850e-47 |
| Msa0138350 | Msa1050260 | 0.809511 | 1.825089e-50 | -8.615850e-47 |
| Msa0138350 | Msa1130770 | 0.800590 | 1.342264e-48 | -8.615850e-47 |
| Msa0138350 | Msa1138800 | 0.804389 | 2.211748e-49 | -8.615850e-47 |
| Msa0138350 | Msa1154630 | 0.825160 | 5.454599e-54 | -8.615850e-47 |
| Msa0138350 | Msa1180840 | 0.818325 | 2.079015e-52 | -8.615850e-47 |
| Msa0138350 | Msa1263000 | 0.803552 | 3.300683e-49 | -8.615850e-47 |
| Msa0138350 | Msa1278030 | 0.817840 | 2.676706e-52 | -8.615850e-47 |
| Msa0138350 | Msa1335500 | 0.807455 | 5.011628e-50 | -8.615850e-47 |
| Msa0138350 | Msa1347610 | 0.824292 | 8.735999e-54 | -8.615850e-47 |
| Msa0138350 | Msa1349850 | -0.823715 | 1.192859e-53 | -8.615850e-47 |
| Msa0138350 | Msa1356450 | 0.841390 | 4.891196e-58 | -8.615850e-47 |
| Msa0138350 | Msa1362590 | 0.808791 | 2.603149e-50 | -8.615850e-47 |
| Msa0138350 | Msa1368170 | 0.807913 | 4.007418e-50 | -8.615850e-47 |
| Msa0138350 | Msa1371530 | 0.993971 | 1.378166e-203 | -8.615850e-47 |
| Msa0138350 | Msa1385570 | 0.838193 | 3.326682e-57 | -8.615850e-47 |
| Msa0138350 | Msa1420830 | 0.825498 | 4.535461e-54 | -8.615850e-47 |
| Msa0138350 | Msa1447900 | 0.815358 | 9.630616e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0138350 | MtrunA17_Chr1g0157491 | 98.698 | 461 | 6 | 0 | 24 | 484 | 13 | 473 | 0.0 | 945 |
| Msa0138350 | MtrunA17_Chr6g0467841 | 46.948 | 213 | 101 | 4 | 25 | 230 | 33 | 240 | 5.80e-40 | 150 |
| Msa0138350 | MtrunA17_Chr8g0387051 | 47.030 | 202 | 95 | 5 | 24 | 219 | 42 | 237 | 7.93e-38 | 144 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0138350 | AT1G76660.1 | 59.267 | 464 | 138 | 10 | 24 | 482 | 7 | 424 | 2.49e-170 | 487 |
| Msa0138350 | AT1G76660.2 | 54.545 | 363 | 117 | 7 | 122 | 482 | 1 | 317 | 1.89e-116 | 345 |
| Msa0138350 | AT5G52430.1 | 43.750 | 224 | 105 | 8 | 24 | 232 | 32 | 249 | 1.96e-34 | 134 |
| Msa0138350 | AT1G63720.1 | 35.401 | 274 | 158 | 6 | 16 | 285 | 28 | 286 | 1.31e-31 | 125 |
| Msa0138350 | AT4G25620.1 | 42.326 | 215 | 98 | 9 | 25 | 226 | 32 | 233 | 5.31e-22 | 99.0 |
Find 167 sgRNAs with CRISPR-Local
Find 218 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTGGGTCTGGGAGGGTTTC+TGG | -0.012729 | 1_3:-71177433 | Msa0138350:CDS |
| TTGATATTTCCTGCAGATTC+TGG | 0.185494 | 1_3:+71176435 | None:intergenic |
| TACCTATGCACAATTCTATT+TGG | 0.226625 | 1_3:-71177353 | Msa0138350:CDS |
| TCATCACTGTATCCTGAAAA+TGG | 0.253710 | 1_3:-71177469 | Msa0138350:CDS |
| CCAGCCACTTGGGGCCCATT+TGG | 0.259334 | 1_3:+71177991 | None:intergenic |
| TCACCAGAGTTCCTTGATAT+TGG | 0.281584 | 1_3:+71177541 | None:intergenic |
| AGAAAGATTGTATAAGTATT+AGG | 0.288801 | 1_3:+71178526 | None:intergenic |
| TATGAGGGAATGGAGGATTT+TGG | 0.301503 | 1_3:+71177329 | None:intergenic |
| TTCTTTGCTTGCTTGCCAAC+TGG | 0.303881 | 1_3:+71176974 | None:intergenic |
| CTGGGTCTGGGAGGGTTTCT+GGG | 0.319925 | 1_3:-71177432 | Msa0138350:CDS |
| AGGCTACTGGCAGGACTTCC+AGG | 0.328429 | 1_3:+71177571 | None:intergenic |
| TTGGGGCCCATTTGGTTGAC+TGG | 0.328650 | 1_3:+71177999 | None:intergenic |
| CTGGCTGATCCATTATTATC+AGG | 0.333530 | 1_3:+71178018 | None:intergenic |
| TCCTTGATATTGGAGATATA+AGG | 0.338998 | 1_3:+71177551 | None:intergenic |
| ACTTGGAGTTGTCTAATAGA+TGG | 0.341135 | 1_3:-71176207 | Msa0138350:three_prime_UTR |
| AAAAGATGGGGAGGTTGTTT+GGG | 0.341988 | 1_3:-71178102 | Msa0138350:CDS |
| TCTCGTATTCCTGATAATAA+TGG | 0.351751 | 1_3:-71178027 | Msa0138350:CDS |
| ATGCAGAGGTTGACTATAGA+AGG | 0.361091 | 1_3:-71176393 | Msa0138350:CDS |
| CCAAATGGGCCCCAAGTGGC+TGG | 0.362429 | 1_3:-71177991 | Msa0138350:CDS |
| TCCATGAGAGTATGATTATC+AGG | 0.365296 | 1_3:+71176490 | None:intergenic |
| AAGTGAGCAAAAGGTACATC+TGG | 0.369839 | 1_3:+71177679 | None:intergenic |
| CGACACTAATGATGTTACTA+TGG | 0.373527 | 1_3:-71177407 | Msa0138350:CDS |
| ACCATGATGCCCTTGACCTC+TGG | 0.374021 | 1_3:-71177106 | Msa0138350:CDS |
| GCTCAATCTACGGGTGGAAA+TGG | 0.386458 | 1_3:-71177271 | Msa0138350:CDS |
| ATTTCTTCCACATCTTGCTT+AGG | 0.387788 | 1_3:+71177223 | None:intergenic |
| AGTTGTTGAAATATAAGTTA+AGG | 0.391176 | 1_3:+71175989 | None:intergenic |
| AAATATCAGAGGACTGGGTC+TGG | 0.392276 | 1_3:-71177445 | Msa0138350:CDS |
| TGGAAGAAATAGAAGCTTAC+CGG | 0.393649 | 1_3:-71177210 | Msa0138350:CDS |
| GAAGCTTACCGGGCATCCTT+TGG | 0.402159 | 1_3:-71177199 | Msa0138350:CDS |
| GTTGTTGAAATATAAGTTAA+GGG | 0.405835 | 1_3:+71175990 | None:intergenic |
| TTGAATTCTTTCATCAATGA+AGG | 0.406547 | 1_3:+71177055 | None:intergenic |
| CTTAATCTGCCACCATTATG+AGG | 0.431013 | 1_3:+71177313 | None:intergenic |
| AATCTGCAGGAAATATCAAA+TGG | 0.433212 | 1_3:-71176431 | Msa0138350:CDS |
| TAGAATTGTGCATAGGTAGC+AGG | 0.433727 | 1_3:+71177358 | None:intergenic |
| AAGGAAAGAAACTCTTTACT+TGG | 0.439431 | 1_3:-71176224 | Msa0138350:three_prime_UTR |
| CAGAAGCTTGCGAGAAAGAA+AGG | 0.445491 | 1_3:-71176368 | Msa0138350:CDS |
| ATTGGTCAACCCAGCCACTT+GGG | 0.446890 | 1_3:+71177981 | None:intergenic |
| TGTGGGCGAAACTCCCGCTC+AGG | 0.448315 | 1_3:+71177499 | None:intergenic |
| AATCCTCCATTCCCTCATAA+TGG | 0.450708 | 1_3:-71177325 | Msa0138350:CDS |
| AAAACAAGGGACTACATTCA+TGG | 0.451350 | 1_3:+71176125 | None:intergenic |
| GATGTTAGAAAGTGAGCAAA+AGG | 0.453692 | 1_3:+71177670 | None:intergenic |
| CGTGGAGATTTCTGATGTAA+TGG | 0.456383 | 1_3:-71177140 | Msa0138350:CDS |
| AGCTGTGTTTCATGAGCATA+TGG | 0.456787 | 1_3:+71177799 | None:intergenic |
| GTTGTTAAGTGAGCCAACTC+TGG | 0.457024 | 1_3:+71177712 | None:intergenic |
| ATCTGCAGGAAATATCAAAT+GGG | 0.459223 | 1_3:-71176430 | Msa0138350:CDS |
| AATATCAGAGGACTGGGTCT+GGG | 0.462841 | 1_3:-71177444 | Msa0138350:CDS |
| GTCAACCTCTTTCCCTGAGC+GGG | 0.463781 | 1_3:-71177512 | Msa0138350:CDS |
| GAATATGATTTGTCATGACT+TGG | 0.464293 | 1_3:-71176345 | Msa0138350:exon |
| ACACCCCGTCGAATCTTCAT+TGG | 0.465939 | 1_3:+71178567 | None:intergenic |
| TCTTGCTTAGGACTTCTAGA+AGG | 0.469074 | 1_3:+71177235 | None:intergenic |
| ATCGTATTTGAAGGACCGCC+AGG | 0.474912 | 1_3:+71177835 | None:intergenic |
| TTTAAGTGGATGCAAACGTT+TGG | 0.478600 | 1_3:-71176070 | Msa0138350:three_prime_UTR |
| CGATTAGACGCGAGTCCAGT+TGG | 0.483659 | 1_3:-71176989 | Msa0138350:CDS |
| AATGGAAAATATCAGAGGAC+TGG | 0.485419 | 1_3:-71177451 | Msa0138350:CDS |
| GGATCAGCCAGTCAACCAAA+TGG | 0.486945 | 1_3:-71178006 | Msa0138350:CDS |
| CATTGATTTGCCAGAGGTCA+AGG | 0.488083 | 1_3:+71177096 | None:intergenic |
| GAGAGGAGCAGTAGATGGTT+CGG | 0.488881 | 1_3:+71177744 | None:intergenic |
| GTCGCATACATCGTATTTGA+AGG | 0.489409 | 1_3:+71177826 | None:intergenic |
| GATTGGTCAACCCAGCCACT+TGG | 0.491046 | 1_3:+71177980 | None:intergenic |
| TCATTATCTGCAAACTCACC+TGG | 0.493733 | 1_3:-71177853 | Msa0138350:CDS |
| GGAGTGAGAGGAGCAGTAGA+TGG | 0.494811 | 1_3:+71177739 | None:intergenic |
| GGACAGAGTCGGTTATATCT+AGG | 0.496269 | 1_3:+71176174 | None:intergenic |
| AAAAGGTACATCTGGGGAAG+AGG | 0.502005 | 1_3:+71177687 | None:intergenic |
| GTAGTGAAATTTGAGAAGAC+TGG | 0.504573 | 1_3:+71177766 | None:intergenic |
| GGATATTGTAGCAACAGCTC+TGG | 0.504750 | 1_3:-71176523 | Msa0138350:CDS |
| TCTTGTTTCAGTTCACAGAA+AGG | 0.507174 | 1_3:-71178072 | Msa0138350:CDS |
| CACTGAAACCAAAGGATGCC+CGG | 0.508288 | 1_3:+71177191 | None:intergenic |
| TGATGTTACTATGGCATCAC+AGG | 0.509412 | 1_3:-71177398 | Msa0138350:CDS |
| GACCTCTGGCAAATCAATGA+TGG | 0.511617 | 1_3:-71177092 | Msa0138350:CDS |
| GCCTTATATCTCCAATATCA+AGG | 0.518593 | 1_3:-71177552 | Msa0138350:CDS |
| TTGTTAAGTGAGCCAACTCT+GGG | 0.521849 | 1_3:+71177713 | None:intergenic |
| AATCAAATTCCTGTATGTGA+TGG | 0.526258 | 1_3:-71176953 | Msa0138350:CDS |
| GCCTGATAATCATACTCTCA+TGG | 0.526761 | 1_3:-71176491 | Msa0138350:CDS |
| AGCTATGCCTGTGACTTGAT+TGG | 0.533069 | 1_3:+71177963 | None:intergenic |
| CCTTCATATCCATCACATAC+AGG | 0.533645 | 1_3:+71176944 | None:intergenic |
| ATGGAAAATATCAGAGGACT+GGG | 0.534187 | 1_3:-71177450 | Msa0138350:CDS |
| GATCAGCCAGTCAACCAAAT+GGG | 0.535549 | 1_3:-71178005 | Msa0138350:CDS |
| TATTGGAGATATAAGGCTAC+TGG | 0.535561 | 1_3:+71177558 | None:intergenic |
| AAACTCCCGCTCAGGGAAAG+AGG | 0.535842 | 1_3:+71177507 | None:intergenic |
| AGAAATCTCCACGTATTGAC+TGG | 0.536110 | 1_3:+71177150 | None:intergenic |
| TCATCCAATGAAGATTCGAC+GGG | 0.536667 | 1_3:-71178571 | None:intergenic |
| GTTTCAGTTCACAGAAAGGT+GGG | 0.537711 | 1_3:-71178068 | Msa0138350:CDS |
| CTGCCACCATTATGAGGGAA+TGG | 0.538108 | 1_3:+71177319 | None:intergenic |
| GACTCGGATGCTCAATCTAC+GGG | 0.540156 | 1_3:-71177280 | Msa0138350:CDS |
| AGACTCGGATGCTCAATCTA+CGG | 0.545021 | 1_3:-71177281 | Msa0138350:CDS |
| AATATAAGTTAAGGGAGTAG+AGG | 0.546505 | 1_3:+71175998 | None:intergenic |
| CAAACGTTTGGCTTTAGCAA+GGG | 0.548018 | 1_3:-71176058 | Msa0138350:three_prime_UTR |
| GAAGGTGGAGCTAAGAGAGA+AGG | 0.552066 | 1_3:+71177940 | None:intergenic |
| CTTGGTGACTGTGCAGTTGA+AGG | 0.553984 | 1_3:+71177886 | None:intergenic |
| CGTAAGATCAGAACAAAAGC+AGG | 0.554346 | 1_3:+71176024 | None:intergenic |
| GTAAAGGATGCTGGTGAAGA+AGG | 0.554485 | 1_3:+71177922 | None:intergenic |
| GCGGGAGTTTCGCCCACAGT+GGG | 0.556115 | 1_3:-71177494 | Msa0138350:CDS |
| TCTCCAATATCAAGGAACTC+TGG | 0.557402 | 1_3:-71177544 | Msa0138350:CDS |
| GCCAGAGGTCAAGGGCATCA+TGG | 0.557610 | 1_3:+71177105 | None:intergenic |
| CATGTCAGATCATAAATCAC+CGG | 0.558274 | 1_3:-71176545 | Msa0138350:intron |
| AGTGAGCAAAAGGTACATCT+GGG | 0.558305 | 1_3:+71177680 | None:intergenic |
| GCAAACGTTTGGCTTTAGCA+AGG | 0.558524 | 1_3:-71176059 | Msa0138350:three_prime_UTR |
| TTATCAGGAATACGAGATGC+AGG | 0.558545 | 1_3:+71178033 | None:intergenic |
| CAAATGGGCCCCAAGTGGCT+GGG | 0.560270 | 1_3:-71177990 | Msa0138350:CDS |
| AATAAGATCCGGTCAAACAC+GGG | 0.563633 | 1_3:+71176151 | None:intergenic |
| ATTCATGGATCAATAAGATC+CGG | 0.564258 | 1_3:+71176140 | None:intergenic |
| AAAGGTACATCTGGGGAAGA+GGG | 0.565920 | 1_3:+71177688 | None:intergenic |
| CTGGACTCGCGTCTAATCGA+AGG | 0.566055 | 1_3:+71176993 | None:intergenic |
| TGCAGAGGTTGACTATAGAA+GGG | 0.566479 | 1_3:-71176392 | Msa0138350:CDS |
| TTCATCCAATGAAGATTCGA+CGG | 0.567083 | 1_3:-71178572 | None:intergenic |
| GACACTGCTTGAAGAAAACA+AGG | 0.568492 | 1_3:+71176111 | None:intergenic |
| CAATAAGATCCGGTCAAACA+CGG | 0.569320 | 1_3:+71176150 | None:intergenic |
| AATATGATTTGTCATGACTT+GGG | 0.569512 | 1_3:-71176344 | Msa0138350:exon |
| CCTGTATGTGATGGATATGA+AGG | 0.571427 | 1_3:-71176944 | Msa0138350:intron |
| GTGAAATTTGAGAAGACTGG+AGG | 0.572005 | 1_3:+71177769 | None:intergenic |
| TCAAATACGATGTATGCGAC+TGG | 0.572329 | 1_3:-71177823 | Msa0138350:CDS |
| ACTACATATTCGCTCTACCC+TGG | 0.573659 | 1_3:-71177589 | Msa0138350:CDS |
| TCAGAGGACTGGGTCTGGGA+GGG | 0.576834 | 1_3:-71177440 | Msa0138350:CDS |
| TGTTTCAGTTCACAGAAAGG+TGG | 0.578020 | 1_3:-71178069 | Msa0138350:CDS |
| ATTCAAAGCTCATGAGACTC+AGG | 0.580037 | 1_3:-71177038 | Msa0138350:CDS |
| GCAGAATGTGTAAAGGATGC+TGG | 0.584993 | 1_3:+71177913 | None:intergenic |
| GTGGGCGAAACTCCCGCTCA+GGG | 0.587338 | 1_3:+71177500 | None:intergenic |
| GGGTTGACCAATCAAGTCAC+AGG | 0.587853 | 1_3:-71177970 | Msa0138350:CDS |
| ATCAGAGGACTGGGTCTGGG+AGG | 0.588077 | 1_3:-71177441 | Msa0138350:CDS |
| TAGAAGTCCTAAGCAAGATG+TGG | 0.589021 | 1_3:-71177230 | Msa0138350:CDS |
| TTGGTCAACCCAGCCACTTG+GGG | 0.591564 | 1_3:+71177982 | None:intergenic |
| ATATGCTCATGAAACACAGC+TGG | 0.591977 | 1_3:-71177797 | Msa0138350:CDS |
| ATTAAGTGTTTCAAAAGACT+CGG | 0.593462 | 1_3:-71177296 | Msa0138350:CDS |
| TGGGATCATCCAGAATCTGC+AGG | 0.595345 | 1_3:-71176444 | Msa0138350:CDS |
| TCTATAGTCAACCTCTGCAT+CGG | 0.596969 | 1_3:+71176396 | None:intergenic |
| CTCATCTGCACTGAAACCAA+AGG | 0.597006 | 1_3:+71177183 | None:intergenic |
| TTCCATCATTGATTTGCCAG+AGG | 0.599588 | 1_3:+71177090 | None:intergenic |
| GTGACTGTGCAGTTGAAGGA+AGG | 0.600512 | 1_3:+71177890 | None:intergenic |
| AGGAAGGGCAGAATGTGTAA+AGG | 0.600967 | 1_3:+71177906 | None:intergenic |
| CTGAAAATGGAAAATATCAG+AGG | 0.602081 | 1_3:-71177456 | Msa0138350:CDS |
| AGAATTGTGCATAGGTAGCA+GGG | 0.602738 | 1_3:+71177359 | None:intergenic |
| GAGCTGTTGCTACAATATCC+CGG | 0.605194 | 1_3:+71176526 | None:intergenic |
| GTTATCATGCTCCGATGCAG+AGG | 0.606978 | 1_3:-71176407 | Msa0138350:CDS |
| GGAGATATAAGGCTACTGGC+AGG | 0.608168 | 1_3:+71177562 | None:intergenic |
| CAAAGCTCATGAGACTCAGG+TGG | 0.609565 | 1_3:-71177035 | Msa0138350:CDS |
| AGAAGCTTGCGAGAAAGAAA+GGG | 0.612565 | 1_3:-71176367 | Msa0138350:CDS |
| GGAAGAAATAGAAGCTTACC+GGG | 0.612807 | 1_3:-71177209 | Msa0138350:CDS |
| TTAATCTGCCACCATTATGA+GGG | 0.614309 | 1_3:+71177314 | None:intergenic |
| ATTGATTTGCCAGAGGTCAA+GGG | 0.615854 | 1_3:+71177097 | None:intergenic |
| TATAAGTATTAGGAAGTCAA+CGG | 0.619865 | 1_3:+71178536 | None:intergenic |
| GGCTACTGGCAGGACTTCCA+GGG | 0.622814 | 1_3:+71177572 | None:intergenic |
| GTGGAAATGGACATCAGAGT+AGG | 0.623948 | 1_3:-71177258 | Msa0138350:CDS |
| GTCCAAATAGAATTGTGCAT+AGG | 0.628022 | 1_3:+71177351 | None:intergenic |
| AGCGGGAGTTTCGCCCACAG+TGG | 0.628097 | 1_3:-71177495 | Msa0138350:CDS |
| CCACCATTATGAGGGAATGG+AGG | 0.638910 | 1_3:+71177322 | None:intergenic |
| CCTCCATTCCCTCATAATGG+TGG | 0.644991 | 1_3:-71177322 | Msa0138350:CDS |
| AAGGATGCTGGTGAAGAAGG+TGG | 0.646683 | 1_3:+71177925 | None:intergenic |
| AAAGCTCATGAGACTCAGGT+GGG | 0.647953 | 1_3:-71177034 | Msa0138350:CDS |
| ATGTCAGATCATAAATCACC+GGG | 0.648766 | 1_3:-71176544 | Msa0138350:intron |
| GTTAAGTGAGCCAACTCTGG+GGG | 0.650031 | 1_3:+71177715 | None:intergenic |
| ACAGTGATGAATCCCACTGT+GGG | 0.651266 | 1_3:+71177482 | None:intergenic |
| TCGGATGCTCAATCTACGGG+TGG | 0.656294 | 1_3:-71177277 | Msa0138350:CDS |
| TGTCAACCTCTTTCCCTGAG+CGG | 0.657293 | 1_3:-71177513 | Msa0138350:CDS |
| GCAGAGGTTGACTATAGAAG+GGG | 0.658601 | 1_3:-71176391 | Msa0138350:CDS |
| ATAAGATCCGGTCAAACACG+GGG | 0.659713 | 1_3:+71176152 | None:intergenic |
| TATAACCACCAGTCAATACG+TGG | 0.662605 | 1_3:-71177158 | Msa0138350:CDS |
| TCTGCAGGAAATATCAAATG+GGG | 0.670683 | 1_3:-71176429 | Msa0138350:CDS |
| TCAACCAAATGGGCCCCAAG+TGG | 0.677451 | 1_3:-71177995 | Msa0138350:CDS |
| AATCTCCACGTATTGACTGG+TGG | 0.682416 | 1_3:+71177153 | None:intergenic |
| TGACTGTGCAGTTGAAGGAA+GGG | 0.689565 | 1_3:+71177891 | None:intergenic |
| TACAGTGATGAATCCCACTG+TGG | 0.717481 | 1_3:+71177481 | None:intergenic |
| TGTTAAGTGAGCCAACTCTG+GGG | 0.718392 | 1_3:+71177714 | None:intergenic |
| GTGAGCAAAAGGTACATCTG+GGG | 0.723428 | 1_3:+71177681 | None:intergenic |
| TTATCTGCAAACTCACCTGG+CGG | 0.723487 | 1_3:-71177850 | Msa0138350:CDS |
| CATCCAATGAAGATTCGACG+GGG | 0.734426 | 1_3:-71178570 | None:intergenic |
| ACACTGCTTGAAGAAAACAA+GGG | 0.754124 | 1_3:+71176112 | None:intergenic |
| TAAGATCCGGTCAAACACGG+GGG | 0.764107 | 1_3:+71176153 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGAAATTTTAAGCTTTTTTA+GGG | + | chr1_3:71176277-71176296 | None:intergenic | 15.0% |
| !! | AACATATTTAAGGATAAAAT+TGG | + | chr1_3:71177940-71177959 | None:intergenic | 15.0% |
| !! | AGAAAGATTGTATAAGTATT+AGG | + | chr1_3:71175993-71176012 | None:intergenic | 20.0% |
| !!! | CTGAAATTTTAAGCTTTTTT+AGG | + | chr1_3:71176278-71176297 | None:intergenic | 20.0% |
| !!! | TATGTTGTAGTTACTTTTAA+TGG | - | chr1_3:71177784-71177803 | Msa0138350:CDS | 20.0% |
| !! | TGAAGATATATTCTCAAAAA+TGG | - | chr1_3:71178052-71178071 | Msa0138350:CDS | 20.0% |
| !! | GAAGATATATTCTCAAAAAT+GGG | - | chr1_3:71178053-71178072 | Msa0138350:CDS | 20.0% |
| !!! | GCGGTTTTTTAAATATAAAA+AGG | + | chr1_3:71178250-71178269 | None:intergenic | 20.0% |
| !!! | TTAATGTTTTGACTTTTAAG+TGG | - | chr1_3:71178432-71178451 | Msa0138350:intron | 20.0% |
| !! | GTTGTTGAAATATAAGTTAA+GGG | + | chr1_3:71178529-71178548 | None:intergenic | 20.0% |
| !! | AGTTGTTGAAATATAAGTTA+AGG | + | chr1_3:71178530-71178549 | None:intergenic | 20.0% |
| ! | TATAAGTATTAGGAAGTCAA+CGG | + | chr1_3:71175983-71176002 | None:intergenic | 25.0% |
| !! | TACAATCTTTCTCTTTTCTT+CGG | - | chr1_3:71176001-71176020 | Msa0138350:three_prime_UTR | 25.0% |
| ! | TTGAAGAGATTAATATGTGT+AGG | + | chr1_3:71176051-71176070 | None:intergenic | 25.0% |
| ! | TATTAACTGTTCCAAACATA+TGG | + | chr1_3:71176200-71176219 | None:intergenic | 25.0% |
| !! | ATATGTTTGGAACAGTTAAT+AGG | - | chr1_3:71176199-71176218 | Msa0138350:three_prime_UTR | 25.0% |
| ! | GATAATGACAAAAAACAACT+TGG | + | chr1_3:71176651-71176670 | None:intergenic | 25.0% |
| ! | ATTAAGTGTTTCAAAAGACT+CGG | - | chr1_3:71177220-71177239 | Msa0138350:CDS | 25.0% |
| ! | TTGAATTCTTTCATCAATGA+AGG | + | chr1_3:71177464-71177483 | None:intergenic | 25.0% |
| ! | TATTACATCTTGAGAAATTG+TGG | - | chr1_3:71177630-71177649 | Msa0138350:CDS | 25.0% |
| !!! | TACTCTTATTTTGAAAGAGA+GGG | + | chr1_3:71177844-71177863 | None:intergenic | 25.0% |
| ! | GCAAGAAAGAAACATATTTA+AGG | + | chr1_3:71177950-71177969 | None:intergenic | 25.0% |
| !! | AATATGATTTGTCATGACTT+GGG | - | chr1_3:71178172-71178191 | Msa0138350:intron | 25.0% |
| !!! | TCTTTCTTTCCTTCTTTTTT+TGG | + | chr1_3:71178272-71178291 | None:intergenic | 25.0% |
| ! | AAAAAGAAGGAAAGAAAGAA+AGG | - | chr1_3:71178273-71178292 | Msa0138350:intron | 25.0% |
| !!! | ACATACAACTTTTGTTGTAT+TGG | - | chr1_3:71178554-71178573 | Msa0138350:CDS | 25.0% |
| !!! | CATACAACTTTTGTTGTATT+GGG | - | chr1_3:71178555-71178574 | Msa0138350:CDS | 25.0% |
| ! | ACAATCTTTCTCTTTTCTTC+GGG | - | chr1_3:71176002-71176021 | Msa0138350:three_prime_UTR | 30.0% |
| ! | TTTTCGTAGAAAATTGCATG+TGG | - | chr1_3:71176074-71176093 | Msa0138350:three_prime_UTR | 30.0% |
| !!! | GTGTTTTAGGATCTAAGTTT+TGG | + | chr1_3:71176101-71176120 | None:intergenic | 30.0% |
| ! | GAAGTATTTAGCCATATGTT+TGG | - | chr1_3:71176186-71176205 | Msa0138350:three_prime_UTR | 30.0% |
| TCTCGTATTCCTGATAATAA+TGG | - | chr1_3:71176489-71176508 | Msa0138350:CDS | 30.0% | |
| TCCTTGATATTGGAGATATA+AGG | + | chr1_3:71176968-71176987 | None:intergenic | 30.0% | |
| ! | CTCTGATATTTTCCATTTTC+AGG | + | chr1_3:71177062-71177081 | None:intergenic | 30.0% |
| CTGAAAATGGAAAATATCAG+AGG | - | chr1_3:71177060-71177079 | Msa0138350:CDS | 30.0% | |
| TACCTATGCACAATTCTATT+TGG | - | chr1_3:71177163-71177182 | Msa0138350:CDS | 30.0% | |
| AATCAAATTCCTGTATGTGA+TGG | - | chr1_3:71177563-71177582 | Msa0138350:CDS | 30.0% | |
| ! | ATGAAGGTATGCTGTAAAAA+CGG | - | chr1_3:71177588-71177607 | Msa0138350:CDS | 30.0% |
| AAAGTAACTACAACATACCA+AGG | + | chr1_3:71177781-71177800 | None:intergenic | 30.0% | |
| !!! | CTACTCTTATTTTGAAAGAG+AGG | + | chr1_3:71177845-71177864 | None:intergenic | 30.0% |
| AATCTGCAGGAAATATCAAA+TGG | - | chr1_3:71178085-71178104 | Msa0138350:CDS | 30.0% | |
| ATCTGCAGGAAATATCAAAT+GGG | - | chr1_3:71178086-71178105 | Msa0138350:CDS | 30.0% | |
| ! | GAATATGATTTGTCATGACT+TGG | - | chr1_3:71178171-71178190 | Msa0138350:intron | 30.0% |
| AAAAAACCGCCAAAAAAAGA+AGG | - | chr1_3:71178260-71178279 | Msa0138350:intron | 30.0% | |
| !!! | TTCTTTCCTTCTTTTTTTGG+CGG | + | chr1_3:71178269-71178288 | None:intergenic | 30.0% |
| AAGGAAAGAAACTCTTTACT+TGG | - | chr1_3:71178292-71178311 | Msa0138350:intron | 30.0% | |
| ATTCATGGATCAATAAGATC+CGG | + | chr1_3:71178379-71178398 | None:intergenic | 30.0% | |
| AATATAAGTTAAGGGAGTAG+AGG | + | chr1_3:71178521-71178540 | None:intergenic | 30.0% | |
| ! | AAAGCTACTCACTGTGTTTT+AGG | + | chr1_3:71176114-71176133 | None:intergenic | 35.0% |
| ! | ACAGTGAGTAGCTTTTATCT+TGG | - | chr1_3:71176119-71176138 | Msa0138350:three_prime_UTR | 35.0% |
| TAGGTAGAAAGATGTTTGAG+AGG | - | chr1_3:71176218-71176237 | Msa0138350:three_prime_UTR | 35.0% | |
| TGTCAATGCAAGTCAAGAAA+GGG | + | chr1_3:71176390-71176409 | None:intergenic | 35.0% | |
| ! | TGCATTGACAGAGAAAAAGA+TGG | - | chr1_3:71176400-71176419 | Msa0138350:CDS | 35.0% |
| ! | GCATTGACAGAGAAAAAGAT+GGG | - | chr1_3:71176401-71176420 | Msa0138350:CDS | 35.0% |
| CATTGACAGAGAAAAAGATG+GGG | - | chr1_3:71176402-71176421 | Msa0138350:CDS | 35.0% | |
| ! | TCTTGTTTCAGTTCACAGAA+AGG | - | chr1_3:71176444-71176463 | Msa0138350:CDS | 35.0% |
| GTAGTGAAATTTGAGAAGAC+TGG | + | chr1_3:71176753-71176772 | None:intergenic | 35.0% | |
| GATGTTAGAAAGTGAGCAAA+AGG | + | chr1_3:71176849-71176868 | None:intergenic | 35.0% | |
| TCCTCAGCAAATCTCAAAAA+TGG | - | chr1_3:71176867-71176886 | Msa0138350:intron | 35.0% | |
| !!! | ACCATTTTTGAGATTTGCTG+AGG | + | chr1_3:71176871-71176890 | None:intergenic | 35.0% |
| TCAGCAAATCTCAAAAATGG+TGG | - | chr1_3:71176870-71176889 | Msa0138350:intron | 35.0% | |
| AAATCTCAAAAATGGTGGCA+AGG | - | chr1_3:71176875-71176894 | Msa0138350:intron | 35.0% | |
| AATCTCAAAAATGGTGGCAA+GGG | - | chr1_3:71176876-71176895 | Msa0138350:intron | 35.0% | |
| TATTGGAGATATAAGGCTAC+TGG | + | chr1_3:71176961-71176980 | None:intergenic | 35.0% | |
| GCCTTATATCTCCAATATCA+AGG | - | chr1_3:71176964-71176983 | Msa0138350:CDS | 35.0% | |
| TCATCACTGTATCCTGAAAA+TGG | - | chr1_3:71177047-71177066 | Msa0138350:CDS | 35.0% | |
| AATGGAAAATATCAGAGGAC+TGG | - | chr1_3:71177065-71177084 | Msa0138350:CDS | 35.0% | |
| ATGGAAAATATCAGAGGACT+GGG | - | chr1_3:71177066-71177085 | Msa0138350:CDS | 35.0% | |
| CGACACTAATGATGTTACTA+TGG | - | chr1_3:71177109-71177128 | Msa0138350:CDS | 35.0% | |
| GTCCAAATAGAATTGTGCAT+AGG | + | chr1_3:71177168-71177187 | None:intergenic | 35.0% | |
| TTAATCTGCCACCATTATGA+GGG | + | chr1_3:71177205-71177224 | None:intergenic | 35.0% | |
| ATTTCTTCCACATCTTGCTT+AGG | + | chr1_3:71177296-71177315 | None:intergenic | 35.0% | |
| TGGAAGAAATAGAAGCTTAC+CGG | - | chr1_3:71177306-71177325 | Msa0138350:CDS | 35.0% | |
| ! | TTTGAAGTTGCTCTTCTCTA+TGG | + | chr1_3:71177705-71177724 | None:intergenic | 35.0% |
| CATGTCAGATCATAAATCAC+CGG | - | chr1_3:71177971-71177990 | Msa0138350:CDS | 35.0% | |
| ATGTCAGATCATAAATCACC+GGG | - | chr1_3:71177972-71177991 | Msa0138350:CDS | 35.0% | |
| ! | TCCATGAGAGTATGATTATC+AGG | + | chr1_3:71178029-71178048 | None:intergenic | 35.0% |
| TTGATATTTCCTGCAGATTC+TGG | + | chr1_3:71178084-71178103 | None:intergenic | 35.0% | |
| TCTGCAGGAAATATCAAATG+GGG | - | chr1_3:71178087-71178106 | Msa0138350:CDS | 35.0% | |
| ACTTGGAGTTGTCTAATAGA+TGG | - | chr1_3:71178309-71178328 | Msa0138350:intron | 35.0% | |
| AAAACAAGGGACTACATTCA+TGG | + | chr1_3:71178394-71178413 | None:intergenic | 35.0% | |
| ACACTGCTTGAAGAAAACAA+GGG | + | chr1_3:71178407-71178426 | None:intergenic | 35.0% | |
| TTTAAGTGGATGCAAACGTT+TGG | - | chr1_3:71178446-71178465 | Msa0138350:intron | 35.0% | |
| !! | CTTTTCTTCGGGTTTGTGAT+TGG | - | chr1_3:71176013-71176032 | Msa0138350:three_prime_UTR | 40.0% |
| CTGTCAATGCAAGTCAAGAA+AGG | + | chr1_3:71176391-71176410 | None:intergenic | 40.0% | |
| AAAAAGATGGGGAGGTTGTT+TGG | - | chr1_3:71176413-71176432 | Msa0138350:CDS | 40.0% | |
| AAAAGATGGGGAGGTTGTTT+GGG | - | chr1_3:71176414-71176433 | Msa0138350:CDS | 40.0% | |
| TGTTTCAGTTCACAGAAAGG+TGG | - | chr1_3:71176447-71176466 | Msa0138350:CDS | 40.0% | |
| GTTTCAGTTCACAGAAAGGT+GGG | - | chr1_3:71176448-71176467 | Msa0138350:CDS | 40.0% | |
| TTATCAGGAATACGAGATGC+AGG | + | chr1_3:71176486-71176505 | None:intergenic | 40.0% | |
| CTGGCTGATCCATTATTATC+AGG | + | chr1_3:71176501-71176520 | None:intergenic | 40.0% | |
| TCATTATCTGCAAACTCACC+TGG | - | chr1_3:71176663-71176682 | Msa0138350:intron | 40.0% | |
| GTCGCATACATCGTATTTGA+AGG | + | chr1_3:71176693-71176712 | None:intergenic | 40.0% | |
| TCAAATACGATGTATGCGAC+TGG | - | chr1_3:71176693-71176712 | Msa0138350:intron | 40.0% | |
| AGCTGTGTTTCATGAGCATA+TGG | + | chr1_3:71176720-71176739 | None:intergenic | 40.0% | |
| ATATGCTCATGAAACACAGC+TGG | - | chr1_3:71176719-71176738 | Msa0138350:intron | 40.0% | |
| GTGAAATTTGAGAAGACTGG+AGG | + | chr1_3:71176750-71176769 | None:intergenic | 40.0% | |
| TTGTTAAGTGAGCCAACTCT+GGG | + | chr1_3:71176806-71176825 | None:intergenic | 40.0% | |
| ! | AGTGAGCAAAAGGTACATCT+GGG | + | chr1_3:71176839-71176858 | None:intergenic | 40.0% |
| ! | AAGTGAGCAAAAGGTACATC+TGG | + | chr1_3:71176840-71176859 | None:intergenic | 40.0% |
| TCTCCAATATCAAGGAACTC+TGG | - | chr1_3:71176972-71176991 | Msa0138350:CDS | 40.0% | |
| TCACCAGAGTTCCTTGATAT+TGG | + | chr1_3:71176978-71176997 | None:intergenic | 40.0% | |
| TGATGTTACTATGGCATCAC+AGG | - | chr1_3:71177118-71177137 | Msa0138350:CDS | 40.0% | |
| AGAATTGTGCATAGGTAGCA+GGG | + | chr1_3:71177160-71177179 | None:intergenic | 40.0% | |
| TAGAATTGTGCATAGGTAGC+AGG | + | chr1_3:71177161-71177180 | None:intergenic | 40.0% | |
| ! | TATGAGGGAATGGAGGATTT+TGG | + | chr1_3:71177190-71177209 | None:intergenic | 40.0% |
| AATCCTCCATTCCCTCATAA+TGG | - | chr1_3:71177191-71177210 | Msa0138350:CDS | 40.0% | |
| CTTAATCTGCCACCATTATG+AGG | + | chr1_3:71177206-71177225 | None:intergenic | 40.0% | |
| TCTTGCTTAGGACTTCTAGA+AGG | + | chr1_3:71177284-71177303 | None:intergenic | 40.0% | |
| TAGAAGTCCTAAGCAAGATG+TGG | - | chr1_3:71177286-71177305 | Msa0138350:CDS | 40.0% | |
| GGAAGAAATAGAAGCTTACC+GGG | - | chr1_3:71177307-71177326 | Msa0138350:CDS | 40.0% | |
| TATAACCACCAGTCAATACG+TGG | - | chr1_3:71177358-71177377 | Msa0138350:CDS | 40.0% | |
| ! | AGAAATCTCCACGTATTGAC+TGG | + | chr1_3:71177369-71177388 | None:intergenic | 40.0% |
| CGTGGAGATTTCTGATGTAA+TGG | - | chr1_3:71177376-71177395 | Msa0138350:CDS | 40.0% | |
| !! | ATTGATTTGCCAGAGGTCAA+GGG | + | chr1_3:71177422-71177441 | None:intergenic | 40.0% |
| !! | TTCCATCATTGATTTGCCAG+AGG | + | chr1_3:71177429-71177448 | None:intergenic | 40.0% |
| ATTCAAAGCTCATGAGACTC+AGG | - | chr1_3:71177478-71177497 | Msa0138350:CDS | 40.0% | |
| CCTTCATATCCATCACATAC+AGG | + | chr1_3:71177575-71177594 | None:intergenic | 40.0% | |
| !! | CCTGTATGTGATGGATATGA+AGG | - | chr1_3:71177572-71177591 | Msa0138350:CDS | 40.0% |
| CATCTCAATAACTAGAGCCT+TGG | - | chr1_3:71177761-71177780 | Msa0138350:CDS | 40.0% | |
| GCCTGATAATCATACTCTCA+TGG | - | chr1_3:71178025-71178044 | Msa0138350:CDS | 40.0% | |
| TCTATAGTCAACCTCTGCAT+CGG | + | chr1_3:71178123-71178142 | None:intergenic | 40.0% | |
| ATGCAGAGGTTGACTATAGA+AGG | - | chr1_3:71178123-71178142 | Msa0138350:intron | 40.0% | |
| TGCAGAGGTTGACTATAGAA+GGG | - | chr1_3:71178124-71178143 | Msa0138350:intron | 40.0% | |
| AGAAGCTTGCGAGAAAGAAA+GGG | - | chr1_3:71178149-71178168 | Msa0138350:intron | 40.0% | |
| AATAAGATCCGGTCAAACAC+GGG | + | chr1_3:71178368-71178387 | None:intergenic | 40.0% | |
| CAATAAGATCCGGTCAAACA+CGG | + | chr1_3:71178369-71178388 | None:intergenic | 40.0% | |
| GACACTGCTTGAAGAAAACA+AGG | + | chr1_3:71178408-71178427 | None:intergenic | 40.0% | |
| !! | CAAACGTTTGGCTTTAGCAA+GGG | - | chr1_3:71178458-71178477 | Msa0138350:intron | 40.0% |
| CGTAAGATCAGAACAAAAGC+AGG | + | chr1_3:71178495-71178514 | None:intergenic | 40.0% | |
| CTTGGCATGACTAGTAGATG+CGG | - | chr1_3:71176137-71176156 | Msa0138350:three_prime_UTR | 45.0% | |
| TGACAGAGAAAAAGATGGGG+AGG | - | chr1_3:71176405-71176424 | Msa0138350:CDS | 45.0% | |
| GATCAGCCAGTCAACCAAAT+GGG | - | chr1_3:71176511-71176530 | Msa0138350:CDS | 45.0% | |
| AGCTATGCCTGTGACTTGAT+TGG | + | chr1_3:71176556-71176575 | None:intergenic | 45.0% | |
| GTAAAGGATGCTGGTGAAGA+AGG | + | chr1_3:71176597-71176616 | None:intergenic | 45.0% | |
| GCAGAATGTGTAAAGGATGC+TGG | + | chr1_3:71176606-71176625 | None:intergenic | 45.0% | |
| AGGAAGGGCAGAATGTGTAA+AGG | + | chr1_3:71176613-71176632 | None:intergenic | 45.0% | |
| TGACTGTGCAGTTGAAGGAA+GGG | + | chr1_3:71176628-71176647 | None:intergenic | 45.0% | |
| TTATCTGCAAACTCACCTGG+CGG | - | chr1_3:71176666-71176685 | Msa0138350:intron | 45.0% | |
| TGTTAAGTGAGCCAACTCTG+GGG | + | chr1_3:71176805-71176824 | None:intergenic | 45.0% | |
| GTTGTTAAGTGAGCCAACTC+TGG | + | chr1_3:71176807-71176826 | None:intergenic | 45.0% | |
| ! | AAAGGTACATCTGGGGAAGA+GGG | + | chr1_3:71176831-71176850 | None:intergenic | 45.0% |
| ! | AAAAGGTACATCTGGGGAAG+AGG | + | chr1_3:71176832-71176851 | None:intergenic | 45.0% |
| ! | GTGAGCAAAAGGTACATCTG+GGG | + | chr1_3:71176838-71176857 | None:intergenic | 45.0% |
| ACTACATATTCGCTCTACCC+TGG | - | chr1_3:71176927-71176946 | Msa0138350:intron | 45.0% | |
| ACAGTGATGAATCCCACTGT+GGG | + | chr1_3:71177037-71177056 | None:intergenic | 45.0% | |
| TACAGTGATGAATCCCACTG+TGG | + | chr1_3:71177038-71177057 | None:intergenic | 45.0% | |
| AAATATCAGAGGACTGGGTC+TGG | - | chr1_3:71177071-71177090 | Msa0138350:CDS | 45.0% | |
| AATATCAGAGGACTGGGTCT+GGG | - | chr1_3:71177072-71177091 | Msa0138350:CDS | 45.0% | |
| AGACTCGGATGCTCAATCTA+CGG | - | chr1_3:71177235-71177254 | Msa0138350:CDS | 45.0% | |
| GTGGAAATGGACATCAGAGT+AGG | - | chr1_3:71177258-71177277 | Msa0138350:CDS | 45.0% | |
| CTCATCTGCACTGAAACCAA+AGG | + | chr1_3:71177336-71177355 | None:intergenic | 45.0% | |
| !! | AATCTCCACGTATTGACTGG+TGG | + | chr1_3:71177366-71177385 | None:intergenic | 45.0% |
| !! | CATTGATTTGCCAGAGGTCA+AGG | + | chr1_3:71177423-71177442 | None:intergenic | 45.0% |
| GACCTCTGGCAAATCAATGA+TGG | - | chr1_3:71177424-71177443 | Msa0138350:CDS | 45.0% | |
| AAAGCTCATGAGACTCAGGT+GGG | - | chr1_3:71177482-71177501 | Msa0138350:CDS | 45.0% | |
| TTCTTTGCTTGCTTGCCAAC+TGG | + | chr1_3:71177545-71177564 | None:intergenic | 45.0% | |
| GAGCTGTTGCTACAATATCC+CGG | + | chr1_3:71177993-71178012 | None:intergenic | 45.0% | |
| GGATATTGTAGCAACAGCTC+TGG | - | chr1_3:71177993-71178012 | Msa0138350:CDS | 45.0% | |
| GCAGAGGTTGACTATAGAAG+GGG | - | chr1_3:71178125-71178144 | Msa0138350:intron | 45.0% | |
| CAGAAGCTTGCGAGAAAGAA+AGG | - | chr1_3:71178148-71178167 | Msa0138350:intron | 45.0% | |
| GGACAGAGTCGGTTATATCT+AGG | + | chr1_3:71178345-71178364 | None:intergenic | 45.0% | |
| ATAAGATCCGGTCAAACACG+GGG | + | chr1_3:71178367-71178386 | None:intergenic | 45.0% | |
| !! | GCAAACGTTTGGCTTTAGCA+AGG | - | chr1_3:71178457-71178476 | Msa0138350:intron | 45.0% |
| !!! | TTATTTTATAAAAGATAAAA+TGG | + | chr1_3:71177903-71177922 | None:intergenic | 5.0% |
| GGATCAGCCAGTCAACCAAA+TGG | - | chr1_3:71176510-71176529 | Msa0138350:CDS | 50.0% | |
| ATTGGTCAACCCAGCCACTT+GGG | + | chr1_3:71176538-71176557 | None:intergenic | 50.0% | |
| GGGTTGACCAATCAAGTCAC+AGG | - | chr1_3:71176546-71176565 | Msa0138350:intron | 50.0% | |
| GAAGGTGGAGCTAAGAGAGA+AGG | + | chr1_3:71176579-71176598 | None:intergenic | 50.0% | |
| AAGGATGCTGGTGAAGAAGG+TGG | + | chr1_3:71176594-71176613 | None:intergenic | 50.0% | |
| GTGACTGTGCAGTTGAAGGA+AGG | + | chr1_3:71176629-71176648 | None:intergenic | 50.0% | |
| ! | CTTGGTGACTGTGCAGTTGA+AGG | + | chr1_3:71176633-71176652 | None:intergenic | 50.0% |
| ATCGTATTTGAAGGACCGCC+AGG | + | chr1_3:71176684-71176703 | None:intergenic | 50.0% | |
| GAGAGGAGCAGTAGATGGTT+CGG | + | chr1_3:71176775-71176794 | None:intergenic | 50.0% | |
| GTTAAGTGAGCCAACTCTGG+GGG | + | chr1_3:71176804-71176823 | None:intergenic | 50.0% | |
| GGAGATATAAGGCTACTGGC+AGG | + | chr1_3:71176957-71176976 | None:intergenic | 50.0% | |
| TGTCAACCTCTTTCCCTGAG+CGG | - | chr1_3:71177003-71177022 | Msa0138350:CDS | 50.0% | |
| CCACCATTATGAGGGAATGG+AGG | + | chr1_3:71177197-71177216 | None:intergenic | 50.0% | |
| CCTCCATTCCCTCATAATGG+TGG | - | chr1_3:71177194-71177213 | Msa0138350:CDS | 50.0% | |
| CTGCCACCATTATGAGGGAA+TGG | + | chr1_3:71177200-71177219 | None:intergenic | 50.0% | |
| GACTCGGATGCTCAATCTAC+GGG | - | chr1_3:71177236-71177255 | Msa0138350:CDS | 50.0% | |
| GCTCAATCTACGGGTGGAAA+TGG | - | chr1_3:71177245-71177264 | Msa0138350:CDS | 50.0% | |
| CACTGAAACCAAAGGATGCC+CGG | + | chr1_3:71177328-71177347 | None:intergenic | 50.0% | |
| CAAAGCTCATGAGACTCAGG+TGG | - | chr1_3:71177481-71177500 | Msa0138350:CDS | 50.0% | |
| TGGGATCATCCAGAATCTGC+AGG | - | chr1_3:71178072-71178091 | Msa0138350:CDS | 50.0% | |
| GTTATCATGCTCCGATGCAG+AGG | - | chr1_3:71178109-71178128 | Msa0138350:intron | 50.0% | |
| TAAGATCCGGTCAAACACGG+GGG | + | chr1_3:71178366-71178385 | None:intergenic | 50.0% | |
| TTGGGGCCCATTTGGTTGAC+TGG | + | chr1_3:71176520-71176539 | None:intergenic | 55.0% | |
| TCAACCAAATGGGCCCCAAG+TGG | - | chr1_3:71176521-71176540 | Msa0138350:CDS | 55.0% | |
| TTGGTCAACCCAGCCACTTG+GGG | + | chr1_3:71176537-71176556 | None:intergenic | 55.0% | |
| ! | GATTGGTCAACCCAGCCACT+TGG | + | chr1_3:71176539-71176558 | None:intergenic | 55.0% |
| GGAGTGAGAGGAGCAGTAGA+TGG | + | chr1_3:71176780-71176799 | None:intergenic | 55.0% | |
| GTCAACCTCTTTCCCTGAGC+GGG | - | chr1_3:71177004-71177023 | Msa0138350:CDS | 55.0% | |
| AAACTCCCGCTCAGGGAAAG+AGG | + | chr1_3:71177012-71177031 | None:intergenic | 55.0% | |
| TCGGATGCTCAATCTACGGG+TGG | - | chr1_3:71177239-71177258 | Msa0138350:CDS | 55.0% | |
| GAAGCTTACCGGGCATCCTT+TGG | - | chr1_3:71177317-71177336 | Msa0138350:CDS | 55.0% | |
| ACCATGATGCCCTTGACCTC+TGG | - | chr1_3:71177410-71177429 | Msa0138350:CDS | 55.0% | |
| CTGGACTCGCGTCTAATCGA+AGG | + | chr1_3:71177526-71177545 | None:intergenic | 55.0% | |
| CGATTAGACGCGAGTCCAGT+TGG | - | chr1_3:71177527-71177546 | Msa0138350:CDS | 55.0% | |
| TCAAACACGGGGGACAGAGT+CGG | + | chr1_3:71178356-71178375 | None:intergenic | 55.0% | |
| CAAATGGGCCCCAAGTGGCT+GGG | - | chr1_3:71176526-71176545 | Msa0138350:CDS | 60.0% | |
| ! | AACTCTGGGGGAGGAGTGAG+AGG | + | chr1_3:71176792-71176811 | None:intergenic | 60.0% |
| TCTCACTCCTCCCCCAGAGT+TGG | - | chr1_3:71176791-71176810 | Msa0138350:intron | 60.0% | |
| ! | AAGTGAGCCAACTCTGGGGG+AGG | + | chr1_3:71176801-71176820 | None:intergenic | 60.0% |
| GGCTACTGGCAGGACTTCCA+GGG | + | chr1_3:71176947-71176966 | None:intergenic | 60.0% | |
| AGGCTACTGGCAGGACTTCC+AGG | + | chr1_3:71176948-71176967 | None:intergenic | 60.0% | |
| ATCAGAGGACTGGGTCTGGG+AGG | - | chr1_3:71177075-71177094 | Msa0138350:CDS | 60.0% | |
| TCAGAGGACTGGGTCTGGGA+GGG | - | chr1_3:71177076-71177095 | Msa0138350:CDS | 60.0% | |
| ACTGGGTCTGGGAGGGTTTC+TGG | - | chr1_3:71177083-71177102 | Msa0138350:CDS | 60.0% | |
| CTGGGTCTGGGAGGGTTTCT+GGG | - | chr1_3:71177084-71177103 | Msa0138350:CDS | 60.0% | |
| !! | GCCAGAGGTCAAGGGCATCA+TGG | + | chr1_3:71177414-71177433 | None:intergenic | 60.0% |
| CTCTGTCCCCCGTGTTTGAC+CGG | - | chr1_3:71178357-71178376 | Msa0138350:intron | 60.0% | |
| CCAGCCACTTGGGGCCCATT+TGG | + | chr1_3:71176528-71176547 | None:intergenic | 65.0% | |
| CCAAATGGGCCCCAAGTGGC+TGG | - | chr1_3:71176525-71176544 | Msa0138350:CDS | 65.0% | |
| GTGGGCGAAACTCCCGCTCA+GGG | + | chr1_3:71177019-71177038 | None:intergenic | 65.0% | |
| TGTGGGCGAAACTCCCGCTC+AGG | + | chr1_3:71177020-71177039 | None:intergenic | 65.0% | |
| AGCGGGAGTTTCGCCCACAG+TGG | - | chr1_3:71177021-71177040 | Msa0138350:CDS | 65.0% | |
| GCGGGAGTTTCGCCCACAGT+GGG | - | chr1_3:71177022-71177041 | Msa0138350:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 71175952 | 71178586 | 71175952 | ID=Msa0138350;Name=Msa0138350 |
| chr1_3 | mRNA | 71175952 | 71178586 | 71175952 | ID=Msa0138350-mRNA-1;Parent=Msa0138350;Name=Msa0138350-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|0.5|0.66|1|1|1|3|408|484 |
| chr1_3 | exon | 71175952 | 71176559 | 71175952 | ID=Msa0138350-mRNA-1:exon:24744;Parent=Msa0138350-mRNA-1 |
| chr1_3 | exon | 71176945 | 71178127 | 71176945 | ID=Msa0138350-mRNA-1:exon:24743;Parent=Msa0138350-mRNA-1 |
| chr1_3 | exon | 71178515 | 71178586 | 71178515 | ID=Msa0138350-mRNA-1:exon:24742;Parent=Msa0138350-mRNA-1 |
| chr1_3 | CDS | 71178515 | 71178586 | 71178515 | ID=Msa0138350-mRNA-1:cds;Parent=Msa0138350-mRNA-1 |
| chr1_3 | CDS | 71176945 | 71178127 | 71176945 | ID=Msa0138350-mRNA-1:cds;Parent=Msa0138350-mRNA-1 |
| chr1_3 | CDS | 71176360 | 71176559 | 71176360 | ID=Msa0138350-mRNA-1:cds;Parent=Msa0138350-mRNA-1 |
| chr1_3 | three_prime_UTR | 71175952 | 71176359 | 71175952 | ID=Msa0138350-mRNA-1:three_prime_utr;Parent=Msa0138350-mRNA-1 |
| Gene Sequence |
| Protein sequence |
