AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0432200

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0432200 MtrunA17_Chr3g0137174 98.942 189 2 0 1 189 1 189 1.03e-141 392
Msa0432200 MtrunA17_Chr4g0002631 67.188 192 55 5 1 184 1 192 2.24e-77 229
Msa0432200 MtrunA17_Chr4g0003421 58.586 99 26 1 6 89 38 136 3.33e-34 121
Msa0432200 MtrunA17_Chr4g0063751 58.947 95 28 1 6 89 5 99 4.87e-33 117
Msa0432200 MtrunA17_Chr2g0333011 65.556 90 25 1 6 89 5 94 2.07e-32 114
Msa0432200 MtrunA17_Chr3g0115631 38.095 147 77 3 1 139 143 283 3.77e-24 97.1
Msa0432200 MtrunA17_Chr2g0316931 48.598 107 42 3 7 100 30 136 7.60e-24 93.6
Msa0432200 MtrunA17_Chr8g0383591 56.164 73 32 0 3 75 140 212 7.71e-24 95.9
Msa0432200 MtrunA17_Chr8g0382491 55.422 83 29 2 2 77 107 188 3.99e-23 93.2
Msa0432200 MtrunA17_Chr1g0196781 56.790 81 34 1 8 87 152 232 5.01e-23 93.6
Msa0432200 MtrunA17_Chr5g0425561 52.874 87 38 1 3 86 168 254 5.34e-23 94.4
Msa0432200 MtrunA17_Chr8g0375031 62.295 61 23 0 5 65 122 182 6.01e-23 91.7
Msa0432200 MtrunA17_Chr2g0323171 71.930 57 16 0 8 64 65 121 6.01e-23 90.5
Msa0432200 MtrunA17_Chr1g0149331 37.681 207 80 5 5 175 4 197 7.22e-23 90.5
Msa0432200 MtrunA17_Chr3g0099871 63.333 60 22 0 5 64 24 83 3.81e-22 89.4
Msa0432200 MtrunA17_Chr7g0221471 64.912 57 20 0 8 64 51 107 4.25e-22 88.2
Msa0432200 MtrunA17_Chr7g0221501 64.912 57 20 0 8 64 51 107 5.97e-22 87.8
Msa0432200 MtrunA17_Chr3g0137831 53.846 104 32 2 1 88 1 104 6.58e-22 88.6
Msa0432200 MtrunA17_Chr6g0453661 56.471 85 32 2 3 86 33 113 1.43e-21 90.9
Msa0432200 MtrunA17_Chr2g0295421 55.072 69 31 0 8 76 96 164 1.52e-21 88.6
Msa0432200 MtrunA17_Chr2g0324131 60.563 71 21 1 1 64 204 274 2.34e-21 90.1
Msa0432200 MtrunA17_Chr2g0282651 59.016 61 25 0 5 65 67 127 6.66e-21 86.7
Msa0432200 MtrunA17_Chr4g0023411 66.667 57 19 0 8 64 65 121 7.88e-21 85.5
Msa0432200 MtrunA17_Chr7g0252381 58.904 73 30 0 7 79 41 113 1.13e-20 86.7
Msa0432200 MtrunA17_Chr7g0217991 51.163 86 40 1 3 88 37 120 1.29e-20 88.2
Msa0432200 MtrunA17_Chr5g0437671 63.333 60 22 0 5 64 82 141 1.62e-20 87.8
Msa0432200 MtrunA17_Chr5g0437371 66.667 57 19 0 7 63 65 121 1.84e-20 87.0
Msa0432200 MtrunA17_Chr7g0257911 63.793 58 21 0 8 65 31 88 2.50e-20 85.9
Msa0432200 MtrunA17_Chr4g0044911 66.667 57 19 0 8 64 96 152 2.91e-20 84.7
Msa0432200 MtrunA17_Chr2g0334031 48.837 86 38 2 5 84 114 199 3.45e-20 86.7
Msa0432200 MtrunA17_Chr2g0282621 61.667 60 23 0 8 67 15 74 3.50e-20 83.2
Msa0432200 MtrunA17_Chr8g0344961 58.333 60 25 0 5 64 121 180 5.36e-20 86.3
Msa0432200 MtrunA17_Chr1g0195151 61.404 57 22 0 8 64 77 133 5.99e-20 85.1
Msa0432200 MtrunA17_Chr4g0044871 64.912 57 20 0 8 64 96 152 7.00e-20 83.6
Msa0432200 MtrunA17_Chr4g0044881 61.667 60 23 0 5 64 111 170 8.82e-20 83.6
Msa0432200 MtrunA17_Chr4g0044901 64.912 57 20 0 8 64 96 152 1.37e-19 82.8
Msa0432200 MtrunA17_Chr4g0062551 58.333 60 25 0 5 64 50 109 1.80e-19 80.5
Msa0432200 MtrunA17_Chr5g0396911 52.632 76 35 1 4 79 108 182 2.20e-19 83.6
Msa0432200 MtrunA17_Chr5g0412641 66.102 59 20 0 7 65 45 103 3.42e-19 83.6
Msa0432200 MtrunA17_Chr4g0062161 58.333 60 25 0 5 64 50 109 7.35e-19 80.5
Msa0432200 MtrunA17_Chr8g0387801 48.889 90 44 1 6 93 105 194 7.72e-19 82.0
Msa0432200 MtrunA17_Chr4g0042761 60.656 61 24 0 3 63 43 103 7.73e-19 82.4
Msa0432200 MtrunA17_Chr8g0367911 64.407 59 21 0 7 65 43 101 9.26e-19 81.6
Msa0432200 MtrunA17_Chr5g0399441 63.158 57 21 0 8 64 28 84 9.78e-19 79.3
Msa0432200 MtrunA17_Chr5g0438831 60.345 58 23 0 7 64 45 102 1.39e-18 81.3
Msa0432200 MtrunA17_Chr4g0055761 53.425 73 33 1 6 77 143 215 1.51e-18 80.9
Msa0432200 MtrunA17_Chr3g0140161 64.912 57 20 0 8 64 43 99 1.56e-18 79.0
Msa0432200 MtrunA17_Chr6g0486701 64.912 57 20 0 8 64 44 100 1.59e-18 79.7
Msa0432200 MtrunA17_Chr5g0432821 53.125 64 30 0 1 64 117 180 2.20e-18 80.5
Msa0432200 MtrunA17_Chr7g0253424 63.158 57 21 0 7 63 38 94 2.77e-18 80.1
Msa0432200 MtrunA17_Chr4g0017851 63.158 57 21 0 8 64 118 174 3.12e-18 80.5
Msa0432200 MtrunA17_Chr8g0335311 54.286 70 29 2 6 72 94 163 4.26e-18 78.2
Msa0432200 MtrunA17_Chr5g0438801 60.345 58 23 0 7 64 50 107 5.30e-18 79.3
Msa0432200 MtrunA17_Chr7g0232261 64.912 57 20 0 8 64 61 117 6.13e-18 78.6
Msa0432200 MtrunA17_Chr7g0275841 59.649 57 23 0 8 64 28 84 6.43e-18 77.0
Msa0432200 MtrunA17_Chr8g0340311 59.677 62 25 0 8 69 47 108 6.49e-18 77.8
Msa0432200 MtrunA17_Chr1g0150631 31.073 177 107 3 8 169 38 214 6.77e-18 78.2
Msa0432200 MtrunA17_Chr3g0126321 58.621 58 24 0 6 63 111 168 7.08e-18 80.1
Msa0432200 MtrunA17_Chr8g0390091 64.912 57 20 0 8 64 37 93 7.94e-18 78.2
Msa0432200 MtrunA17_Chr4g0055951 63.158 57 21 0 8 64 74 130 8.58e-18 78.6
Msa0432200 MtrunA17_Chr4g0055781 46.512 86 41 2 5 89 99 180 9.60e-18 78.2
Msa0432200 MtrunA17_Chr8g0378811 43.617 94 50 1 1 94 48 138 1.06e-17 78.6
Msa0432200 MtrunA17_Chr2g0301191 55.000 60 27 0 8 67 19 78 1.43e-17 77.0
Msa0432200 MtrunA17_Chr1g0150691 56.667 60 26 0 8 67 22 81 1.71e-17 77.0
Msa0432200 MtrunA17_Chr4g0066931 54.688 64 29 0 7 70 52 115 1.94e-17 78.6
Msa0432200 MtrunA17_Chr1g0150671 33.728 169 102 4 5 164 43 210 2.32e-17 77.8
Msa0432200 MtrunA17_Chr4g0055801 56.923 65 27 1 5 68 151 215 3.35e-17 77.8
Msa0432200 MtrunA17_Chr7g0243431 58.730 63 19 1 8 63 78 140 3.59e-17 78.6
Msa0432200 MtrunA17_Chr1g0189941 51.471 68 31 1 8 75 24 89 3.76e-17 74.7
Msa0432200 MtrunA17_Chr3g0134161 56.140 57 25 0 8 64 45 101 3.78e-17 75.1
Msa0432200 MtrunA17_Chr1g0184081 60.000 60 23 1 7 65 20 79 3.79e-17 74.3
Msa0432200 MtrunA17_Chr1g0150661 55.000 60 27 0 8 67 35 94 4.08e-17 76.3
Msa0432200 MtrunA17_Chr8g0346741 57.895 57 24 0 8 64 39 95 4.33e-17 75.1
Msa0432200 MtrunA17_Chr6g0461271 57.627 59 25 0 5 63 30 88 5.36e-17 77.0
Msa0432200 MtrunA17_Chr2g0331231 61.404 57 22 0 8 64 41 97 6.35e-17 75.1
Msa0432200 MtrunA17_Chr5g0401871 42.857 84 45 1 5 85 22 105 8.44e-17 74.3
Msa0432200 MtrunA17_Chr8g0334801 61.404 57 22 0 8 64 52 108 8.75e-17 74.7
Msa0432200 MtrunA17_Chr2g0301171 53.333 60 28 0 8 67 19 78 9.44e-17 74.7
Msa0432200 MtrunA17_Chr1g0170531 54.839 62 27 1 6 66 87 148 9.79e-17 75.1
Msa0432200 MtrunA17_Chr7g0265851 52.564 78 31 1 8 85 24 95 1.26e-16 74.3
Msa0432200 MtrunA17_Chr8g0350701 58.621 58 24 0 6 63 25 82 1.49e-16 75.9
Msa0432200 MtrunA17_Chr4g0046161 53.968 63 28 1 5 66 54 116 1.53e-16 72.0
Msa0432200 MtrunA17_Chr2g0286161 36.842 114 65 2 7 120 49 155 1.62e-16 75.5
Msa0432200 MtrunA17_Chr3g0136551 43.590 78 41 1 3 77 60 137 2.54e-16 74.7
Msa0432200 MtrunA17_Chr1g0158971 50.000 74 35 1 5 76 112 185 2.59e-16 75.5
Msa0432200 MtrunA17_Chr1g0200931 53.521 71 31 2 2 71 17 86 2.64e-16 72.0
Msa0432200 MtrunA17_Chr1g0186731 54.688 64 28 1 2 64 15 78 3.12e-16 72.0
Msa0432200 MtrunA17_Chr8g0335331 49.296 71 35 1 8 77 125 195 5.99e-16 72.4
Msa0432200 MtrunA17_Chr2g0283171 54.098 61 27 1 5 64 60 120 1.04e-15 70.9
Msa0432200 MtrunA17_Chr1g0153151 54.386 57 26 0 8 64 44 100 1.12e-15 71.2
Msa0432200 MtrunA17_Chr2g0301181 51.667 60 29 0 8 67 19 78 1.49e-15 72.0
Msa0432200 MtrunA17_Chr2g0283181 53.968 63 28 1 3 64 144 206 2.48e-15 72.4
Msa0432200 MtrunA17_Chr7g0250731 52.459 61 28 1 6 65 59 119 4.74e-15 70.1
Msa0432200 MtrunA17_Chr4g0026881 55.172 58 25 1 8 64 97 154 4.97e-15 70.9
Msa0432200 MtrunA17_Chr2g0297331 59.322 59 23 1 7 64 13 71 6.58e-15 68.2
Msa0432200 MtrunA17_Chr7g0250711 52.459 61 28 1 6 65 58 118 6.76e-15 69.7
Msa0432200 MtrunA17_Chr7g0261151 57.377 61 25 1 5 64 17 77 7.30e-15 68.2
Msa0432200 MtrunA17_Chr1g0184061 51.613 62 29 1 5 65 74 135 7.64e-15 70.1
Msa0432200 MtrunA17_Chr7g0250721 52.459 61 28 1 6 65 59 119 7.82e-15 69.7
Msa0432200 MtrunA17_Chr1g0196871 56.897 58 24 1 8 64 16 73 9.69e-15 67.0
Msa0432200 MtrunA17_Chr8g0335321 50.820 61 29 1 6 65 94 154 1.46e-14 68.9
Msa0432200 MtrunA17_Chr1g0186671 59.322 59 23 1 7 64 18 76 1.78e-14 67.0
Msa0432200 MtrunA17_Chr6g0473961 60.714 56 22 0 8 63 54 109 1.81e-14 68.9
Msa0432200 MtrunA17_Chr7g0261101 56.667 60 25 1 7 65 19 78 1.95e-14 67.4
Msa0432200 MtrunA17_Chr1g0203861 60.714 56 22 0 8 63 44 99 2.70e-14 68.2
Msa0432200 MtrunA17_Chr6g0473861 60.714 56 22 0 8 63 63 118 2.83e-14 69.3
Msa0432200 MtrunA17_Chr6g0473941 60.714 56 22 0 8 63 33 88 3.27e-14 68.2
Msa0432200 MtrunA17_Chr3g0136541 46.479 71 35 1 10 77 42 112 3.38e-14 68.6
Msa0432200 MtrunA17_Chr5g0396191 68.421 57 18 0 8 64 11 67 4.38e-14 67.4
Msa0432200 MtrunA17_Chr6g0473971 58.929 56 23 0 8 63 54 109 4.64e-14 68.2
Msa0432200 MtrunA17_Chr6g0473881 58.929 56 23 0 8 63 110 165 5.24e-14 68.9
Msa0432200 MtrunA17_Chr6g0473931 60.714 56 22 0 8 63 33 88 5.67e-14 67.0
Msa0432200 MtrunA17_Chr6g0473741 58.929 56 23 0 8 63 66 121 7.21e-14 67.4
Msa0432200 MtrunA17_Chr6g0473781 58.929 56 23 0 8 63 57 112 1.06e-13 67.0
Msa0432200 MtrunA17_Chr1g0183981 53.333 60 27 1 5 63 72 131 1.17e-13 66.6
Msa0432200 MtrunA17_Chr1g0205961 46.774 62 32 1 3 64 110 170 1.20e-13 68.2
Msa0432200 MtrunA17_Chr6g0473981 58.929 56 23 0 8 63 54 109 1.59e-13 66.6
Msa0432200 MtrunA17_Chr4g0026931 33.117 154 87 5 9 158 132 273 2.91e-13 66.2
Msa0432200 MtrunA17_Chr6g0474001 57.143 56 24 0 8 63 54 109 3.00e-13 66.2
Msa0432200 MtrunA17_Chr1g0146191 65.517 58 20 0 8 65 47 104 3.10e-13 66.2
Msa0432200 MtrunA17_Chr7g0225131 53.333 60 25 1 8 67 29 85 3.95e-13 62.4
Msa0432200 MtrunA17_Chr3g0129421 62.903 62 23 0 5 66 167 228 4.43e-13 66.6
Msa0432200 MtrunA17_Chr1g0184031 54.386 57 25 1 8 63 84 140 4.68e-13 65.1
Msa0432200 MtrunA17_Chr6g0486711 66.667 57 19 0 8 64 49 105 5.22e-13 65.1
Msa0432200 MtrunA17_Chr1g0186681 53.333 60 26 1 7 64 18 77 6.59e-13 62.8
Msa0432200 MtrunA17_Chr1g0184011 54.545 55 24 1 10 63 86 140 6.71e-13 64.7
Msa0432200 MtrunA17_Chr3g0142081 57.377 61 26 0 4 64 35 95 9.43e-13 64.3
Msa0432200 MtrunA17_Chr1g0155751 59.649 57 23 0 8 64 39 95 1.08e-12 64.7
Msa0432200 MtrunA17_Chr5g0438841 40.449 89 51 1 7 93 15 103 1.18e-12 63.2
Msa0432200 MtrunA17_Chr8g0345531 57.447 47 19 1 7 53 115 160 1.46e-12 65.1
Msa0432200 MtrunA17_Chr1g0184071 54.386 57 25 1 8 63 69 125 1.51e-12 62.8
Msa0432200 MtrunA17_Chr1g0209891 30.303 132 72 4 7 119 53 183 2.42e-12 63.9
Msa0432200 MtrunA17_Chr3g0131601 64.912 57 20 0 8 64 76 132 3.05e-12 63.5
Msa0432200 MtrunA17_Chr6g0473771 53.571 56 26 0 8 63 43 98 3.33e-12 60.5
Msa0432200 MtrunA17_Chr1g0183961 58.333 72 29 1 5 75 24 95 3.53e-12 61.2
Msa0432200 MtrunA17_Chr5g0396301 49.206 63 26 2 6 64 16 76 4.76e-12 61.2
Msa0432200 MtrunA17_Chr6g0473791 63.636 44 16 0 8 51 57 100 5.03e-12 60.8
Msa0432200 MtrunA17_Chr7g0261181 51.852 81 29 2 5 75 10 90 5.83e-12 60.5
Msa0432200 MtrunA17_Chr4g0057241 54.386 57 25 1 8 64 15 70 7.23e-12 60.8
Msa0432200 MtrunA17_Chr3g0114761 55.072 69 30 1 5 73 22 89 1.18e-11 61.2
Msa0432200 MtrunA17_Chr8g0345551 58.537 41 17 0 8 48 117 157 1.22e-11 62.4
Msa0432200 MtrunA17_Chr5g0423811 55.556 45 20 0 3 47 83 127 1.96e-11 61.6
Msa0432200 MtrunA17_Chr5g0424051 60.656 61 23 1 5 64 93 153 2.69e-11 61.2
Msa0432200 MtrunA17_Chr4g0002771 64.407 59 21 0 5 63 74 132 3.02e-11 60.1
Msa0432200 MtrunA17_Chr1g0170471 50.909 55 26 1 16 69 91 145 5.04e-11 58.9
Msa0432200 MtrunA17_Chr2g0321071 54.237 59 25 2 8 64 47 105 6.08e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0432200 AT5G25190.1 66.321 193 48 3 1 189 1 180 5.96e-83 243
Msa0432200 AT1G15360.1 72.464 69 19 0 6 74 5 73 1.83e-32 115
Msa0432200 AT1G15360.2 72.464 69 19 0 6 74 5 73 1.83e-32 115
Msa0432200 AT5G25390.2 40.722 194 72 9 6 176 5 178 1.67e-29 108
Msa0432200 AT5G25390.1 39.691 194 71 10 6 176 5 175 3.45e-26 99.4
Msa0432200 AT1G22190.1 52.941 85 37 1 2 86 77 158 8.93e-24 94.7
Msa0432200 AT5G65130.1 53.571 84 37 1 3 86 106 187 2.08e-23 94.4
Msa0432200 AT5G65130.2 53.571 84 37 1 3 86 108 189 2.25e-23 94.4
Msa0432200 AT1G78080.1 41.259 143 77 3 2 143 146 282 3.01e-23 94.7
Msa0432200 AT1G36060.1 51.648 91 39 2 1 86 136 226 1.37e-22 92.8
Msa0432200 AT3G15210.1 67.241 58 19 0 7 64 24 81 1.57e-22 90.9
Msa0432200 AT4G13620.1 52.747 91 31 2 4 94 228 306 2.29e-22 93.2
Msa0432200 AT4G39780.1 66.667 60 20 0 5 64 90 149 6.11e-22 90.1
Msa0432200 AT5G11190.1 58.242 91 24 1 6 82 5 95 7.74e-22 88.2
Msa0432200 AT2G22200.1 61.905 63 24 0 2 64 65 127 7.79e-22 89.7
Msa0432200 AT3G20310.1 48.352 91 43 1 5 95 24 110 7.80e-22 89.4
Msa0432200 AT5G44210.1 61.290 62 24 0 3 64 28 89 3.51e-21 86.7
Msa0432200 AT5G13910.1 57.534 73 31 0 7 79 19 91 8.07e-21 85.9
Msa0432200 AT3G11020.1 68.421 57 18 0 8 64 78 134 1.06e-20 87.8
Msa0432200 AT5G13330.1 62.903 62 22 1 4 64 34 95 1.67e-20 85.1
Msa0432200 AT1G21910.1 45.794 107 44 2 8 114 50 142 2.12e-20 85.5
Msa0432200 AT1G28370.1 60.317 63 24 1 7 68 19 81 2.72e-20 83.6
Msa0432200 AT1G28370.2 60.317 63 24 1 7 68 57 119 2.78e-20 84.3
Msa0432200 AT5G05410.2 51.220 82 39 1 8 89 79 159 3.01e-20 86.3
Msa0432200 AT2G20880.1 66.667 57 19 0 8 64 187 243 3.34e-20 86.7
Msa0432200 AT5G61890.1 64.912 57 20 0 8 64 90 146 3.39e-20 85.1
Msa0432200 AT1G28360.1 63.158 57 21 0 8 64 12 68 3.82e-20 83.6
Msa0432200 AT5G05410.1 51.220 82 39 1 8 89 79 159 4.35e-20 86.3
Msa0432200 AT1G50640.1 60.000 60 24 0 7 66 27 86 4.43e-20 84.3
Msa0432200 AT1G03800.1 60.345 58 23 0 7 64 52 109 6.53e-20 84.3
Msa0432200 AT1G72360.1 58.621 58 24 0 7 64 24 81 6.55e-20 83.6
Msa0432200 AT2G40340.2 38.235 136 81 1 8 143 14 146 7.08e-20 85.1
Msa0432200 AT2G40340.5 38.235 136 81 1 8 143 14 146 7.08e-20 85.1
Msa0432200 AT2G40340.4 38.235 136 81 1 8 143 14 146 7.08e-20 85.1
Msa0432200 AT1G24590.1 66.102 59 20 0 7 65 57 115 8.63e-20 85.1
Msa0432200 AT2G47520.1 53.623 69 31 1 8 76 50 117 8.74e-20 82.4
Msa0432200 AT1G19210.1 55.385 65 29 0 5 69 9 73 1.02e-19 82.4
Msa0432200 AT1G12980.1 48.889 90 46 0 7 96 56 145 1.34e-19 84.7
Msa0432200 AT2G40340.1 38.235 136 81 1 8 143 72 204 1.54e-19 84.7
Msa0432200 AT2G40340.6 38.235 136 81 1 8 143 79 211 1.61e-19 84.7
Msa0432200 AT1G72360.2 58.621 58 24 0 7 64 75 132 1.97e-19 83.6
Msa0432200 AT2G33710.1 60.000 60 24 0 5 64 67 126 2.01e-19 82.4
Msa0432200 AT1G72360.3 58.621 58 24 0 7 64 73 130 2.06e-19 83.2
Msa0432200 AT1G71450.1 53.488 86 36 1 8 89 24 109 2.44e-19 81.6
Msa0432200 AT2G33710.2 60.000 60 24 0 5 64 67 126 2.69e-19 82.4
Msa0432200 AT2G40340.3 49.367 79 37 1 8 86 72 147 3.34e-19 83.2
Msa0432200 AT4G32800.1 65.000 60 21 0 5 64 16 75 3.70e-19 82.0
Msa0432200 AT4G06746.1 55.000 60 27 0 5 64 33 92 4.86e-19 79.7
Msa0432200 AT1G74930.1 55.556 63 28 0 5 67 18 80 5.01e-19 80.9
Msa0432200 AT1G12890.1 56.061 66 29 0 5 70 18 83 5.60e-19 81.3
Msa0432200 AT3G16280.1 66.667 57 19 0 8 64 61 117 7.18e-19 81.3
Msa0432200 AT2G35700.1 64.912 57 20 0 8 64 45 101 9.62e-19 80.1
Msa0432200 AT3G16280.2 66.667 57 19 0 8 64 79 135 9.62e-19 81.3
Msa0432200 AT4G27950.1 58.730 63 26 0 5 67 115 177 1.05e-18 82.4
Msa0432200 AT5G19790.1 60.294 68 26 1 7 73 21 88 1.57e-18 80.9
Msa0432200 AT4G16750.1 61.667 60 23 0 5 64 37 96 1.63e-18 79.3
Msa0432200 AT2G44940.1 66.667 57 19 0 8 64 100 156 1.83e-18 81.3
Msa0432200 AT4G11140.1 34.711 121 76 1 6 123 85 205 2.05e-18 80.9
Msa0432200 AT5G18560.1 60.656 61 24 0 7 67 54 114 2.12e-18 81.6
Msa0432200 AT5G21960.1 57.377 61 26 0 7 67 6 66 2.29e-18 79.7
Msa0432200 AT5G47220.1 53.333 75 34 1 6 79 115 189 2.37e-18 80.1
Msa0432200 AT5G11590.1 66.667 57 19 0 8 64 51 107 2.66e-18 79.7
Msa0432200 AT1G28160.1 53.425 73 34 0 7 79 38 110 2.99e-18 80.1
Msa0432200 AT4G17500.1 58.209 67 27 1 6 71 146 212 3.35e-18 80.1
Msa0432200 AT3G16770.1 57.895 57 24 0 8 64 79 135 3.65e-18 79.7
Msa0432200 AT3G57600.1 44.681 94 46 2 7 94 27 120 4.31e-18 80.1
Msa0432200 AT4G28140.1 61.404 57 22 0 8 64 143 199 4.74e-18 80.1
Msa0432200 AT4G23750.2 50.000 66 33 0 5 70 119 184 1.01e-17 79.7
Msa0432200 AT4G23750.1 50.000 66 33 0 5 70 119 184 1.01e-17 79.7
Msa0432200 AT2G25820.1 64.912 57 20 0 8 64 26 82 1.31e-17 77.8
Msa0432200 AT3G61630.1 62.069 58 22 0 6 63 103 160 1.31e-17 79.3
Msa0432200 AT5G25810.1 63.158 57 21 0 8 64 36 92 1.43e-17 77.4
Msa0432200 AT5G53290.1 60.345 58 23 0 6 63 123 180 2.22e-17 79.0
Msa0432200 AT3G60490.1 63.158 57 21 0 8 64 71 127 3.26e-17 77.4
Msa0432200 AT1G75490.1 57.895 57 24 0 8 64 42 98 4.36e-17 75.9
Msa0432200 AT4G36900.1 56.140 57 25 0 8 64 30 86 5.27e-17 75.5
Msa0432200 AT1G01250.1 59.649 57 23 0 8 64 45 101 6.08e-17 75.5
Msa0432200 AT5G18450.1 39.048 105 64 0 8 112 34 138 6.33e-17 77.4
Msa0432200 AT5G47230.1 57.377 61 25 1 5 64 153 213 7.15e-17 77.0
Msa0432200 AT2G23340.1 56.140 57 25 0 8 64 28 84 9.48e-17 74.3
Msa0432200 AT3G23230.1 54.167 72 30 2 5 73 17 88 9.91e-17 73.6
Msa0432200 AT1G22985.1 52.000 75 32 2 5 76 72 145 1.39e-16 73.6
Msa0432200 AT2G46310.1 59.649 57 23 0 7 63 98 154 1.52e-16 75.9
Msa0432200 AT5G67190.1 44.872 78 43 0 8 85 21 98 1.53e-16 73.9
Msa0432200 AT4G25490.1 66.071 56 19 0 8 63 48 103 1.60e-16 74.7
Msa0432200 AT5G51190.1 44.706 85 46 1 5 88 69 153 1.78e-16 74.7
Msa0432200 AT2G40350.2 53.333 60 28 0 8 67 74 133 2.08e-16 73.2
Msa0432200 AT1G46768.3 54.386 57 26 0 8 64 31 87 2.09e-16 72.8
Msa0432200 AT1G46768.1 54.386 57 26 0 8 64 31 87 2.22e-16 72.8
Msa0432200 AT1G46768.2 54.386 57 26 0 8 64 31 87 2.22e-16 72.8
Msa0432200 AT2G40350.1 53.333 60 28 0 8 67 67 126 2.43e-16 72.8
Msa0432200 AT4G31060.1 39.831 118 63 3 8 117 27 144 2.57e-16 73.6
Msa0432200 AT2G44840.1 53.030 66 27 2 4 65 85 150 4.93e-16 73.6
Msa0432200 AT1G68550.1 34.615 130 74 3 2 127 107 229 5.43e-16 74.7
Msa0432200 AT1G68550.2 34.615 130 74 3 2 127 107 229 5.43e-16 74.7
Msa0432200 AT5G43410.1 52.239 67 31 1 7 72 14 80 5.69e-16 71.2
Msa0432200 AT4G25470.1 64.286 56 20 0 8 63 51 106 7.49e-16 72.8
Msa0432200 AT4G17490.1 55.738 61 26 1 5 64 134 194 7.64e-16 73.9
Msa0432200 AT5G07580.1 58.333 60 24 1 8 66 110 169 1.16e-15 72.4
Msa0432200 AT3G50260.1 50.877 57 28 0 8 64 21 77 1.64e-15 70.5
Msa0432200 AT4G25480.1 62.500 56 21 0 8 63 51 106 2.26e-15 71.6
Msa0432200 AT5G61600.1 50.725 69 33 1 8 75 88 156 3.45e-15 71.6
Msa0432200 AT1G71130.1 52.239 67 27 1 2 63 73 139 4.71e-15 69.7
Msa0432200 AT5G64750.1 59.259 54 22 0 13 66 190 243 1.20e-14 71.6
Msa0432200 AT1G22810.1 31.655 139 67 4 5 139 11 125 1.21e-14 68.2
Msa0432200 AT5G51990.1 60.714 56 22 0 8 63 54 109 2.12e-14 69.3
Msa0432200 AT2G36450.1 60.345 58 22 1 8 64 15 72 3.21e-14 67.8
Msa0432200 AT5G07310.1 43.333 90 51 0 8 97 92 181 7.53e-14 68.2
Msa0432200 AT2G38340.1 55.072 69 23 1 4 64 66 134 7.67e-14 68.2
Msa0432200 AT3G23240.1 51.613 62 29 1 3 63 77 138 7.92e-14 67.4
Msa0432200 AT1G53170.1 51.250 80 39 0 7 86 30 109 8.29e-14 67.0
Msa0432200 AT1G43160.1 62.121 66 24 1 1 66 55 119 9.86e-14 66.6
Msa0432200 AT1G71520.1 47.761 67 27 2 5 65 11 75 1.65e-13 65.1
Msa0432200 AT3G14230.3 43.966 116 59 2 5 119 120 230 2.18e-13 67.8
Msa0432200 AT3G14230.2 43.966 116 59 2 5 119 121 231 2.41e-13 67.8
Msa0432200 AT3G14230.1 43.966 116 59 2 5 119 125 235 2.82e-13 67.4
Msa0432200 AT2G31230.1 50.820 61 29 1 5 64 83 143 3.16e-13 66.2
Msa0432200 AT1G77200.1 61.905 63 24 0 2 64 37 99 3.23e-13 66.2
Msa0432200 AT3G25890.1 71.053 38 11 0 10 47 133 170 3.34e-13 67.0
Msa0432200 AT3G25890.2 71.053 38 11 0 10 47 133 170 3.34e-13 67.0
Msa0432200 AT4G34410.1 62.687 67 25 0 8 74 136 202 3.94e-13 66.2
Msa0432200 AT4G18450.1 55.000 60 25 2 6 63 108 167 5.22e-13 66.2
Msa0432200 AT2G40220.1 68.421 57 18 0 7 63 54 110 1.12e-12 65.5
Msa0432200 AT1G33760.1 43.363 113 51 2 5 113 17 120 1.21e-12 63.5
Msa0432200 AT1G77640.1 61.017 59 23 0 6 64 41 99 1.65e-12 64.3
Msa0432200 AT5G50080.1 63.333 60 22 0 5 64 74 133 2.14e-12 63.5
Msa0432200 AT5G50080.2 63.333 60 22 0 5 64 83 142 2.33e-12 63.5
Msa0432200 AT1G53910.1 61.667 60 23 0 5 64 122 181 3.49e-12 64.3
Msa0432200 AT1G53910.2 61.667 60 23 0 5 64 122 181 3.49e-12 64.3
Msa0432200 AT1G53910.3 61.667 60 23 0 5 64 120 179 3.61e-12 64.3
Msa0432200 AT1G63030.2 51.786 56 27 0 8 63 30 85 6.65e-12 61.6
Msa0432200 AT1G63030.1 51.786 56 27 0 8 63 30 85 6.65e-12 61.6
Msa0432200 AT1G64380.1 50.602 83 37 1 1 79 129 211 3.30e-11 61.2
Msa0432200 AT1G12610.1 50.000 56 28 0 8 63 30 85 4.69e-11 59.7
Msa0432200 AT1G44830.1 61.667 60 22 1 6 64 33 92 6.31e-11 59.7

Find 52 sgRNAs with CRISPR-Local

Find 154 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAGACTGATGACAACATAAT+TGG 0.262378 3_2:+84404717 None:intergenic
ATTAATATTATTAATGCTTT+AGG 0.264506 3_2:-84404822 Msa0432200:three_prime_UTR
ATAGAGGAATTGCTTCATTA+TGG 0.265059 3_2:-84404961 Msa0432200:CDS
TTATTATTGTGCATGTTTCT+TGG 0.271282 3_2:-84404689 Msa0432200:three_prime_UTR
TCATAGTAGTATCAATTTCT+TGG 0.285328 3_2:+84405094 None:intergenic
ATTTAGCTAGTGTCCTCTTT+TGG 0.310804 3_2:-84404798 Msa0432200:three_prime_UTR
CAATATGGGGTGGCGAATTT+CGG 0.312981 3_2:+84405637 None:intergenic
TGAGGCTGTTGCAGAGATAT+TGG 0.340722 3_2:+84405174 None:intergenic
TCTCCACCTCCTCCTCCTCT+TGG 0.358034 3_2:-84405788 Msa0432200:five_prime_UTR
GACAAAGGCATTGGGGCTCT+TGG 0.365987 3_2:-84405664 Msa0432200:CDS
AGGTGGAGAAGGAGAGGTGA+TGG 0.372177 3_2:+84405802 None:intergenic
TAGAGGAATTGCTTCATTAT+GGG 0.393664 3_2:-84404960 Msa0432200:CDS
AAAAGAATCAGAGGGAAATT+GGG 0.395389 3_2:-84405058 Msa0432200:CDS
TGTTGTGGTCTAGCCATGTT+AGG 0.402461 3_2:+84405704 None:intergenic
AGGCGTCCGACAAAGGCATT+GGG 0.410359 3_2:-84405672 Msa0432200:CDS
ACAAAGGCATTGGGGCTCTT+GGG 0.427788 3_2:-84405663 Msa0432200:CDS
TGTGACACATTGGGGTTGTA+AGG 0.432124 3_2:+84405279 None:intergenic
AAACCAAGAGGAGGAGGAGG+TGG 0.447327 3_2:+84405785 None:intergenic
TAATAACAACATTGTCCAAT+GGG 0.462002 3_2:+84404752 None:intergenic
GGTGGAGAAGGAGAGGTGAT+GGG 0.470985 3_2:+84405803 None:intergenic
GAGGCGTCCGACAAAGGCAT+TGG 0.472374 3_2:-84405673 Msa0432200:CDS
AGAGGAGGAGGAGGTGGAGA+AGG 0.474990 3_2:+84405791 None:intergenic
AGGAGGAGGTGGAGAAGGAG+AGG 0.476502 3_2:+84405796 None:intergenic
AAGAGCCCCAATGCCTTTGT+CGG 0.476653 3_2:+84405666 None:intergenic
CAAGACTAATGTGTGGTACA+AGG 0.476857 3_2:-84405317 Msa0432200:CDS
TTTCATGGGAACATTGTTTG+TGG 0.482813 3_2:+84405122 None:intergenic
GATGATGATTGTGACACATT+GGG 0.489977 3_2:+84405270 None:intergenic
TCACATTGAACAAATGATAG+AGG 0.493691 3_2:-84404977 Msa0432200:CDS
AATGCCTTTGTCGGACGCCT+CGG 0.517800 3_2:+84405675 None:intergenic
GGTGTCTAGACTTACAATAT+GGG 0.524604 3_2:+84405623 None:intergenic
CTTTGTGAAGATTGTTTCTG+AGG 0.530721 3_2:+84405156 None:intergenic
GTTGTGAAACCAAGAGGAGG+AGG 0.541398 3_2:+84405779 None:intergenic
TCAATGTGATCTTCTTCAAG+AGG 0.543478 3_2:+84404991 None:intergenic
GTGACACATTGGGGTTGTAA+GGG 0.555765 3_2:+84405280 None:intergenic
GTGTTTCACTTTCATGTCTG+TGG 0.565586 3_2:+84404910 None:intergenic
ATAATAACAACATTGTCCAA+TGG 0.572646 3_2:+84404751 None:intergenic
TTTCACTTTCATGTCTGTGG+TGG 0.585069 3_2:+84404913 None:intergenic
GTGAAACCAAGAGGAGGAGG+AGG 0.586007 3_2:+84405782 None:intergenic
AGATGATGATTGTGACACAT+TGG 0.587146 3_2:+84405269 None:intergenic
GTTACCGAGGCGTCCGACAA+AGG 0.593207 3_2:-84405679 Msa0432200:CDS
TACTACTATGAAACATGAAG+AGG 0.601855 3_2:-84405082 Msa0432200:CDS
ACGCCTCGGTAACGTTGTTG+TGG 0.609578 3_2:+84405689 None:intergenic
TAAACTGCATAGATGCTACA+TGG 0.617860 3_2:-84405217 Msa0432200:CDS
TTTGTTGTGAAACCAAGAGG+AGG 0.619517 3_2:+84405776 None:intergenic
AAGACTAATGTGTGGTACAA+GGG 0.623635 3_2:-84405316 Msa0432200:CDS
ATGATGATTGTGACACATTG+GGG 0.665424 3_2:+84405271 None:intergenic
TGGCTTCATTGCAAATCACA+AGG 0.668334 3_2:-84405197 Msa0432200:CDS
GTGTCTAGACTTACAATATG+GGG 0.673317 3_2:+84405624 None:intergenic
TCTAGACTTACAATATGGGG+TGG 0.685523 3_2:+84405627 None:intergenic
GGCGTCCGACAAAGGCATTG+GGG 0.701891 3_2:-84405671 Msa0432200:CDS
AGACCACAACAACGTTACCG+AGG 0.703547 3_2:-84405692 Msa0432200:CDS
GAAGCAGCAAGACTAATGTG+TGG 0.733704 3_2:-84405324 Msa0432200:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAATATTATTAATGCTTT+AGG - chr3_2:84405690-84405709 Msa0432200:CDS 10.0%
!! ATTAATATTATTAATGCTTT+AGG - chr3_2:84405690-84405709 Msa0432200:CDS 10.0%
!!! TACATTTGTTTTTCCTAACA+TGG - chr3_2:84404795-84404814 Msa0432200:three_prime_UTR 25.0%
!!! AAGTTTTAACAAAATCACGA+TGG + chr3_2:84404913-84404932 None:intergenic 25.0%
! TCATAGTAGTATCAATTTCT+TGG + chr3_2:84405421-84405440 None:intergenic 25.0%
! GTCACTTAGATAAAAAATCT+AGG + chr3_2:84405741-84405760 None:intergenic 25.0%
! TAATAACAACATTGTCCAAT+GGG + chr3_2:84405763-84405782 None:intergenic 25.0%
! ATAATAACAACATTGTCCAA+TGG + chr3_2:84405764-84405783 None:intergenic 25.0%
! TTATTATTGTGCATGTTTCT+TGG - chr3_2:84405823-84405842 Msa0432200:five_prime_UTR 25.0%
!!! TACATTTGTTTTTCCTAACA+TGG - chr3_2:84404795-84404814 Msa0432200:three_prime_UTR 25.0%
!!! AAGTTTTAACAAAATCACGA+TGG + chr3_2:84404913-84404932 None:intergenic 25.0%
! TCATAGTAGTATCAATTTCT+TGG + chr3_2:84405421-84405440 None:intergenic 25.0%
! GTCACTTAGATAAAAAATCT+AGG + chr3_2:84405741-84405760 None:intergenic 25.0%
! TAATAACAACATTGTCCAAT+GGG + chr3_2:84405763-84405782 None:intergenic 25.0%
! ATAATAACAACATTGTCCAA+TGG + chr3_2:84405764-84405783 None:intergenic 25.0%
! TTATTATTGTGCATGTTTCT+TGG - chr3_2:84405823-84405842 Msa0432200:five_prime_UTR 25.0%
!! AATTTTGTTGTGAAACCAAG+AGG + chr3_2:84404742-84404761 None:intergenic 30.0%
!!! CTTTTCAGAAAGTGTTTTTG+AGG + chr3_2:84404773-84404792 None:intergenic 30.0%
! ACAGTTACTACTATCTTTTG+AGG + chr3_2:84404987-84405006 None:intergenic 30.0%
TCATTATGTGCAGAAAAACT+AGG - chr3_2:84405114-84405133 Msa0432200:CDS 30.0%
!!! ATTTCTTGGCTACTTTTCAT+GGG + chr3_2:84405407-84405426 None:intergenic 30.0%
!!! AATTTCTTGGCTACTTTTCA+TGG + chr3_2:84405408-84405427 None:intergenic 30.0%
TACTACTATGAAACATGAAG+AGG - chr3_2:84405430-84405449 Msa0432200:intron 30.0%
AAAAAGAATCAGAGGGAAAT+TGG - chr3_2:84405453-84405472 Msa0432200:intron 30.0%
AAAAGAATCAGAGGGAAATT+GGG - chr3_2:84405454-84405473 Msa0432200:intron 30.0%
!! GGTTTTCAAGAAAGTTAAAG+TGG - chr3_2:84405475-84405494 Msa0432200:intron 30.0%
TCACATTGAACAAATGATAG+AGG - chr3_2:84405535-84405554 Msa0432200:intron 30.0%
ATAGAGGAATTGCTTCATTA+TGG - chr3_2:84405551-84405570 Msa0432200:intron 30.0%
TAGAGGAATTGCTTCATTAT+GGG - chr3_2:84405552-84405571 Msa0432200:intron 30.0%
! AAAAAATCTAGGACCAAAAG+AGG + chr3_2:84405730-84405749 None:intergenic 30.0%
! TTTTTATCTAAGTGACCCAT+TGG - chr3_2:84405745-84405764 Msa0432200:five_prime_UTR 30.0%
TAGACTGATGACAACATAAT+TGG + chr3_2:84405798-84405817 None:intergenic 30.0%
!! AATTTTGTTGTGAAACCAAG+AGG + chr3_2:84404742-84404761 None:intergenic 30.0%
!!! CTTTTCAGAAAGTGTTTTTG+AGG + chr3_2:84404773-84404792 None:intergenic 30.0%
! ACAGTTACTACTATCTTTTG+AGG + chr3_2:84404987-84405006 None:intergenic 30.0%
TCATTATGTGCAGAAAAACT+AGG - chr3_2:84405114-84405133 Msa0432200:CDS 30.0%
!!! ATTTCTTGGCTACTTTTCAT+GGG + chr3_2:84405407-84405426 None:intergenic 30.0%
!!! AATTTCTTGGCTACTTTTCA+TGG + chr3_2:84405408-84405427 None:intergenic 30.0%
TACTACTATGAAACATGAAG+AGG - chr3_2:84405430-84405449 Msa0432200:intron 30.0%
AAAAAGAATCAGAGGGAAAT+TGG - chr3_2:84405453-84405472 Msa0432200:intron 30.0%
AAAAGAATCAGAGGGAAATT+GGG - chr3_2:84405454-84405473 Msa0432200:intron 30.0%
!! GGTTTTCAAGAAAGTTAAAG+TGG - chr3_2:84405475-84405494 Msa0432200:intron 30.0%
TCACATTGAACAAATGATAG+AGG - chr3_2:84405535-84405554 Msa0432200:intron 30.0%
ATAGAGGAATTGCTTCATTA+TGG - chr3_2:84405551-84405570 Msa0432200:intron 30.0%
TAGAGGAATTGCTTCATTAT+GGG - chr3_2:84405552-84405571 Msa0432200:intron 30.0%
! AAAAAATCTAGGACCAAAAG+AGG + chr3_2:84405730-84405749 None:intergenic 30.0%
! TTTTTATCTAAGTGACCCAT+TGG - chr3_2:84405745-84405764 Msa0432200:five_prime_UTR 30.0%
TAGACTGATGACAACATAAT+TGG + chr3_2:84405798-84405817 None:intergenic 30.0%
GTGTCTAGACTTACAATATG+GGG + chr3_2:84404891-84404910 None:intergenic 35.0%
GGTGTCTAGACTTACAATAT+GGG + chr3_2:84404892-84404911 None:intergenic 35.0%
TGGTGTCTAGACTTACAATA+TGG + chr3_2:84404893-84404912 None:intergenic 35.0%
!!! ATCTTTTGAGGCTATGAGTT+TGG + chr3_2:84404975-84404994 None:intergenic 35.0%
TGTGCAGAAAAACTAGGATA+TGG - chr3_2:84405120-84405139 Msa0432200:CDS 35.0%
AGAAAAACTAGGATATGGCT+TGG - chr3_2:84405125-84405144 Msa0432200:CDS 35.0%
AAGACTAATGTGTGGTACAA+GGG - chr3_2:84405196-84405215 Msa0432200:CDS 35.0%
ATGATGATTGTGACACATTG+GGG + chr3_2:84405244-84405263 None:intergenic 35.0%
GATGATGATTGTGACACATT+GGG + chr3_2:84405245-84405264 None:intergenic 35.0%
AGATGATGATTGTGACACAT+TGG + chr3_2:84405246-84405265 None:intergenic 35.0%
TAAACTGCATAGATGCTACA+TGG - chr3_2:84405295-84405314 Msa0432200:CDS 35.0%
!! CTTTGTGAAGATTGTTTCTG+AGG + chr3_2:84405359-84405378 None:intergenic 35.0%
TTTCATGGGAACATTGTTTG+TGG + chr3_2:84405393-84405412 None:intergenic 35.0%
TGAAGAGGAAAAAGAATCAG+AGG - chr3_2:84405445-84405464 Msa0432200:intron 35.0%
GAAGAGGAAAAAGAATCAGA+GGG - chr3_2:84405446-84405465 Msa0432200:intron 35.0%
TCAATGTGATCTTCTTCAAG+AGG + chr3_2:84405524-84405543 None:intergenic 35.0%
! ATTTAGCTAGTGTCCTCTTT+TGG - chr3_2:84405714-84405733 Msa0432200:exon 35.0%
GTGTCTAGACTTACAATATG+GGG + chr3_2:84404891-84404910 None:intergenic 35.0%
GGTGTCTAGACTTACAATAT+GGG + chr3_2:84404892-84404911 None:intergenic 35.0%
TGGTGTCTAGACTTACAATA+TGG + chr3_2:84404893-84404912 None:intergenic 35.0%
!!! ATCTTTTGAGGCTATGAGTT+TGG + chr3_2:84404975-84404994 None:intergenic 35.0%
TGTGCAGAAAAACTAGGATA+TGG - chr3_2:84405120-84405139 Msa0432200:CDS 35.0%
AGAAAAACTAGGATATGGCT+TGG - chr3_2:84405125-84405144 Msa0432200:CDS 35.0%
AAGACTAATGTGTGGTACAA+GGG - chr3_2:84405196-84405215 Msa0432200:CDS 35.0%
ATGATGATTGTGACACATTG+GGG + chr3_2:84405244-84405263 None:intergenic 35.0%
GATGATGATTGTGACACATT+GGG + chr3_2:84405245-84405264 None:intergenic 35.0%
AGATGATGATTGTGACACAT+TGG + chr3_2:84405246-84405265 None:intergenic 35.0%
TAAACTGCATAGATGCTACA+TGG - chr3_2:84405295-84405314 Msa0432200:CDS 35.0%
!! CTTTGTGAAGATTGTTTCTG+AGG + chr3_2:84405359-84405378 None:intergenic 35.0%
TTTCATGGGAACATTGTTTG+TGG + chr3_2:84405393-84405412 None:intergenic 35.0%
TGAAGAGGAAAAAGAATCAG+AGG - chr3_2:84405445-84405464 Msa0432200:intron 35.0%
GAAGAGGAAAAAGAATCAGA+GGG - chr3_2:84405446-84405465 Msa0432200:intron 35.0%
TCAATGTGATCTTCTTCAAG+AGG + chr3_2:84405524-84405543 None:intergenic 35.0%
! ATTTAGCTAGTGTCCTCTTT+TGG - chr3_2:84405714-84405733 Msa0432200:exon 35.0%
!!! GTGATGGGTTTTTGTAGTTG+GGG + chr3_2:84404697-84404716 None:intergenic 40.0%
!!! GGTGATGGGTTTTTGTAGTT+GGG + chr3_2:84404698-84404717 None:intergenic 40.0%
!!! AGGTGATGGGTTTTTGTAGT+TGG + chr3_2:84404699-84404718 None:intergenic 40.0%
! TTTGTTGTGAAACCAAGAGG+AGG + chr3_2:84404739-84404758 None:intergenic 40.0%
TCTAGACTTACAATATGGGG+TGG + chr3_2:84404888-84404907 None:intergenic 40.0%
!!! TGGTACTTTTGAAACTGCAG+AGG - chr3_2:84405145-84405164 Msa0432200:CDS 40.0%
CAAGACTAATGTGTGGTACA+AGG - chr3_2:84405195-84405214 Msa0432200:CDS 40.0%
TGGCTTCATTGCAAATCACA+AGG - chr3_2:84405315-84405334 Msa0432200:CDS 40.0%
TTTCACTTTCATGTCTGTGG+TGG + chr3_2:84405602-84405621 None:intergenic 40.0%
GTGTTTCACTTTCATGTCTG+TGG + chr3_2:84405605-84405624 None:intergenic 40.0%
!!! GTGATGGGTTTTTGTAGTTG+GGG + chr3_2:84404697-84404716 None:intergenic 40.0%
!!! GGTGATGGGTTTTTGTAGTT+GGG + chr3_2:84404698-84404717 None:intergenic 40.0%
!!! AGGTGATGGGTTTTTGTAGT+TGG + chr3_2:84404699-84404718 None:intergenic 40.0%
! TTTGTTGTGAAACCAAGAGG+AGG + chr3_2:84404739-84404758 None:intergenic 40.0%
TCTAGACTTACAATATGGGG+TGG + chr3_2:84404888-84404907 None:intergenic 40.0%
!!! TGGTACTTTTGAAACTGCAG+AGG - chr3_2:84405145-84405164 Msa0432200:CDS 40.0%
CAAGACTAATGTGTGGTACA+AGG - chr3_2:84405195-84405214 Msa0432200:CDS 40.0%
TGGCTTCATTGCAAATCACA+AGG - chr3_2:84405315-84405334 Msa0432200:CDS 40.0%
TTTCACTTTCATGTCTGTGG+TGG + chr3_2:84405602-84405621 None:intergenic 40.0%
GTGTTTCACTTTCATGTCTG+TGG + chr3_2:84405605-84405624 None:intergenic 40.0%
TGTTGTGGTCTAGCCATGTT+AGG + chr3_2:84404811-84404830 None:intergenic 45.0%
CAATATGGGGTGGCGAATTT+CGG + chr3_2:84404878-84404897 None:intergenic 45.0%
CTATGAGTTTGGCAGGATCA+CGG + chr3_2:84404964-84404983 None:intergenic 45.0%
! TTTGAGGCTATGAGTTTGGC+AGG + chr3_2:84404971-84404990 None:intergenic 45.0%
GAAGCAGCAAGACTAATGTG+TGG - chr3_2:84405188-84405207 Msa0432200:CDS 45.0%
GTGACACATTGGGGTTGTAA+GGG + chr3_2:84405235-84405254 None:intergenic 45.0%
TGTGACACATTGGGGTTGTA+AGG + chr3_2:84405236-84405255 None:intergenic 45.0%
TGAGGCTGTTGCAGAGATAT+TGG + chr3_2:84405341-84405360 None:intergenic 45.0%
TGTTGTGGTCTAGCCATGTT+AGG + chr3_2:84404811-84404830 None:intergenic 45.0%
CAATATGGGGTGGCGAATTT+CGG + chr3_2:84404878-84404897 None:intergenic 45.0%
CTATGAGTTTGGCAGGATCA+CGG + chr3_2:84404964-84404983 None:intergenic 45.0%
! TTTGAGGCTATGAGTTTGGC+AGG + chr3_2:84404971-84404990 None:intergenic 45.0%
GAAGCAGCAAGACTAATGTG+TGG - chr3_2:84405188-84405207 Msa0432200:CDS 45.0%
GTGACACATTGGGGTTGTAA+GGG + chr3_2:84405235-84405254 None:intergenic 45.0%
TGTGACACATTGGGGTTGTA+AGG + chr3_2:84405236-84405255 None:intergenic 45.0%
TGAGGCTGTTGCAGAGATAT+TGG + chr3_2:84405341-84405360 None:intergenic 45.0%
GTTGTGAAACCAAGAGGAGG+AGG + chr3_2:84404736-84404755 None:intergenic 50.0%
AGACCACAACAACGTTACCG+AGG - chr3_2:84404820-84404839 Msa0432200:three_prime_UTR 50.0%
AAGAGCCCCAATGCCTTTGT+CGG + chr3_2:84404849-84404868 None:intergenic 50.0%
!! ACAAAGGCATTGGGGCTCTT+GGG - chr3_2:84404849-84404868 Msa0432200:three_prime_UTR 50.0%
GTTGTGAAACCAAGAGGAGG+AGG + chr3_2:84404736-84404755 None:intergenic 50.0%
AGACCACAACAACGTTACCG+AGG - chr3_2:84404820-84404839 Msa0432200:three_prime_UTR 50.0%
AAGAGCCCCAATGCCTTTGT+CGG + chr3_2:84404849-84404868 None:intergenic 50.0%
!! ACAAAGGCATTGGGGCTCTT+GGG - chr3_2:84404849-84404868 Msa0432200:three_prime_UTR 50.0%
GGTGGAGAAGGAGAGGTGAT+GGG + chr3_2:84404712-84404731 None:intergenic 55.0%
AGGTGGAGAAGGAGAGGTGA+TGG + chr3_2:84404713-84404732 None:intergenic 55.0%
AAACCAAGAGGAGGAGGAGG+TGG + chr3_2:84404730-84404749 None:intergenic 55.0%
GTGAAACCAAGAGGAGGAGG+AGG + chr3_2:84404733-84404752 None:intergenic 55.0%
ACGCCTCGGTAACGTTGTTG+TGG + chr3_2:84404826-84404845 None:intergenic 55.0%
AATGCCTTTGTCGGACGCCT+CGG + chr3_2:84404840-84404859 None:intergenic 55.0%
!! AGGCGTCCGACAAAGGCATT+GGG - chr3_2:84404840-84404859 Msa0432200:three_prime_UTR 55.0%
!! GACAAAGGCATTGGGGCTCT+TGG - chr3_2:84404848-84404867 Msa0432200:three_prime_UTR 55.0%
GGTGGAGAAGGAGAGGTGAT+GGG + chr3_2:84404712-84404731 None:intergenic 55.0%
AGGTGGAGAAGGAGAGGTGA+TGG + chr3_2:84404713-84404732 None:intergenic 55.0%
AAACCAAGAGGAGGAGGAGG+TGG + chr3_2:84404730-84404749 None:intergenic 55.0%
GTGAAACCAAGAGGAGGAGG+AGG + chr3_2:84404733-84404752 None:intergenic 55.0%
ACGCCTCGGTAACGTTGTTG+TGG + chr3_2:84404826-84404845 None:intergenic 55.0%
AATGCCTTTGTCGGACGCCT+CGG + chr3_2:84404840-84404859 None:intergenic 55.0%
!! AGGCGTCCGACAAAGGCATT+GGG - chr3_2:84404840-84404859 Msa0432200:three_prime_UTR 55.0%
!! GACAAAGGCATTGGGGCTCT+TGG - chr3_2:84404848-84404867 Msa0432200:three_prime_UTR 55.0%
AGGAGGAGGTGGAGAAGGAG+AGG + chr3_2:84404719-84404738 None:intergenic 60.0%
AGAGGAGGAGGAGGTGGAGA+AGG + chr3_2:84404724-84404743 None:intergenic 60.0%
TCTCCACCTCCTCCTCCTCT+TGG - chr3_2:84404724-84404743 Msa0432200:three_prime_UTR 60.0%
! GTTACCGAGGCGTCCGACAA+AGG - chr3_2:84404833-84404852 Msa0432200:three_prime_UTR 60.0%
! GAGGCGTCCGACAAAGGCAT+TGG - chr3_2:84404839-84404858 Msa0432200:three_prime_UTR 60.0%
!! GGCGTCCGACAAAGGCATTG+GGG - chr3_2:84404841-84404860 Msa0432200:three_prime_UTR 60.0%
AGGAGGAGGTGGAGAAGGAG+AGG + chr3_2:84404719-84404738 None:intergenic 60.0%
AGAGGAGGAGGAGGTGGAGA+AGG + chr3_2:84404724-84404743 None:intergenic 60.0%
TCTCCACCTCCTCCTCCTCT+TGG - chr3_2:84404724-84404743 Msa0432200:three_prime_UTR 60.0%
! GTTACCGAGGCGTCCGACAA+AGG - chr3_2:84404833-84404852 Msa0432200:three_prime_UTR 60.0%
! GAGGCGTCCGACAAAGGCAT+TGG - chr3_2:84404839-84404858 Msa0432200:three_prime_UTR 60.0%
!! GGCGTCCGACAAAGGCATTG+GGG - chr3_2:84404841-84404860 Msa0432200:three_prime_UTR 60.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 84404676 84405858 84404676 ID=Msa0432200;Name=Msa0432200
chr3_2 mRNA 84404676 84405858 84404676 ID=Msa0432200-mRNA-1;Parent=Msa0432200;Name=Msa0432200-mRNA-1;_AED=0.00;_eAED=0.00;_QI=138|1|1|1|1|1|2|245|189
chr3_2 exon 84404676 84405407 84404676 ID=Msa0432200-mRNA-1:exon:23871;Parent=Msa0432200-mRNA-1
chr3_2 exon 84405638 84405858 84405638 ID=Msa0432200-mRNA-1:exon:23870;Parent=Msa0432200-mRNA-1
chr3_2 five_prime_UTR 84405721 84405858 84405721 ID=Msa0432200-mRNA-1:five_prime_utr;Parent=Msa0432200-mRNA-1
chr3_2 CDS 84405638 84405720 84405638 ID=Msa0432200-mRNA-1:cds;Parent=Msa0432200-mRNA-1
chr3_2 CDS 84404921 84405407 84404921 ID=Msa0432200-mRNA-1:cds;Parent=Msa0432200-mRNA-1
chr3_2 three_prime_UTR 84404676 84404920 84404676 ID=Msa0432200-mRNA-1:three_prime_utr;Parent=Msa0432200-mRNA-1
Gene Sequence

>Msa0432200

ATGGCTAGACCACAACAACGTTACCGAGGCGTCCGACAAAGGCATTGGGGCTCTTGGGTCTCCGAAATTCGCCACCCCATATTAAAAACTAGGATATGGCTTGGTACTTTTGAAACTGCAGAGGATGCAGCTAGAGCATACGATGAAGCAGCAAGACTAATGTGTGGTACAAGGGCAAGAACAAATTTCCCTTACAACCCCAATGTGTCACAATCATCATCTTCTAAGCTTCTCTCAGCAACTTTAACTGCTAAACTGCATAGATGCTACATGGCTTCATTGCAAATCACAAGGCCAATATCTCTGCAACAGCCTCAGAAACAATCTTCACAAAGTGTAAACATATCCACAAACAATGTTCCCATGAAAAGTAGCCAAGAAATTGATACTACTATGAAACATGAAGAGGAAAAAGAATCAGAGGGAAATTGGGTTTTCAAGAAAGTTAAAGTGGAAAATTCTCAGCAATTTATTAAGCCTCTTGAAGAAGATCACATTGAACAAATGATAGAGGAATTGCTTCATTATGGGTCTATTGAGCTTTGTTCTGTTTTTCCACCACAGACATGA
Protein sequence

>Msa0432200

MARPQQRYRGVRQRHWGSWVSEIRHPILKTRIWLGTFETAEDAARAYDEAARLMCGTRARTNFPYNPNVSQSSSSKLLSATLTAKLHRCYMASLQITRPISLQQPQKQSSQSVNISTNNVPMKSSQEIDTTMKHEEEKESEGNWVFKKVKVENSQQFIKPLEEDHIEQMIEELLHYGSIELCSVFPPQT*