AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0509510


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0509510 MtrunA17_Chr3g0114501 98.649 296 4 0 4 299 294 589 0.0 597
Msa0509510 MtrunA17_Chr7g0261881 47.405 289 147 2 2 290 301 584 4.51e-89 277
Msa0509510 MtrunA17_Chr7g0261811 48.540 274 138 1 5 278 304 574 7.88e-87 271
Msa0509510 MtrunA17_Chr7g0261771 50.542 277 134 1 5 281 308 581 1.99e-86 270
Msa0509510 MtrunA17_Chr1g0187241 50.741 270 129 2 4 273 303 568 3.23e-86 269
Msa0509510 MtrunA17_Chr1g0166731 51.111 270 129 2 4 273 197 463 5.07e-85 263
Msa0509510 MtrunA17_Chr7g0261661 49.097 277 138 1 5 281 190 463 7.35e-84 261
Msa0509510 MtrunA17_Chr1g0166711 48.611 288 145 2 4 291 300 584 1.51e-83 262
Msa0509510 MtrunA17_Chr7g0241741 46.715 274 142 2 2 272 290 562 5.91e-81 255
Msa0509510 MtrunA17_Chr3g0077151 45.455 275 147 2 2 275 275 547 7.78e-80 251
Msa0509510 MtrunA17_Chr1g0166791 44.792 288 157 2 3 290 298 583 4.84e-79 251
Msa0509510 MtrunA17_Chr7g0261851 45.085 295 155 3 4 295 304 594 1.09e-76 244
Msa0509510 MtrunA17_Chr3g0082631 42.373 295 157 5 2 289 185 473 4.52e-75 237
Msa0509510 MtrunA17_Chr1g0166771 46.825 252 125 3 3 254 265 507 5.88e-75 239
Msa0509510 MtrunA17_Chr7g0261791 46.468 269 141 1 3 271 305 570 1.13e-74 239
Msa0509510 MtrunA17_Chr4g0005901 43.066 274 152 2 2 272 300 572 4.61e-74 237
Msa0509510 MtrunA17_Chr4g0014841 42.125 273 154 2 2 273 282 551 8.13e-74 236
Msa0509510 MtrunA17_Chr8g0353031 41.455 275 156 3 2 272 278 551 8.61e-74 236
Msa0509510 MtrunA17_Chr4g0014861 41.758 273 155 3 2 273 161 430 1.89e-73 232
Msa0509510 MtrunA17_Chr4g0014781 41.818 275 156 2 2 275 284 555 3.29e-73 234
Msa0509510 MtrunA17_Chr4g0014871 41.758 273 155 2 2 273 286 555 2.62e-72 232
Msa0509510 MtrunA17_Chr3g0112611 40.940 298 168 5 2 294 298 592 1.29e-70 229
Msa0509510 MtrunA17_Chr3g0112631 42.125 273 150 5 4 271 3 272 1.51e-70 220
Msa0509510 MtrunA17_Chr1g0166741 43.911 271 143 3 3 273 301 562 6.60e-70 226
Msa0509510 MtrunA17_Chr4g0014791 40.876 274 155 3 2 274 285 552 8.99e-70 226
Msa0509510 MtrunA17_Chr3g0112671 41.096 292 148 5 2 290 299 569 1.40e-69 226
Msa0509510 MtrunA17_Chr4g0014801 38.909 275 164 2 2 275 284 555 9.89e-69 223
Msa0509510 MtrunA17_Chr3g0104011 42.182 275 154 3 2 272 291 564 1.69e-68 223
Msa0509510 MtrunA17_Chr8g0375311 41.516 277 157 2 2 274 310 585 3.67e-68 222
Msa0509510 MtrunA17_Chr7g0261721 48.341 211 109 0 71 281 1 211 6.79e-68 211
Msa0509510 MtrunA17_Chr3g0142101 42.909 275 148 3 2 276 306 571 2.73e-67 220
Msa0509510 MtrunA17_Chr5g0399061 40.288 278 157 4 2 273 300 574 6.02e-66 216
Msa0509510 MtrunA17_Chr3g0142121 41.912 272 149 3 5 276 11 273 9.36e-66 207
Msa0509510 MtrunA17_Chr7g0240381 37.584 298 172 4 2 295 296 583 4.61e-65 214
Msa0509510 MtrunA17_Chr8g0375291 42.264 265 148 2 2 262 310 573 1.17e-64 213
Msa0509510 MtrunA17_Chr4g0008651 37.993 279 166 3 2 277 301 575 3.07e-64 212
Msa0509510 MtrunA17_Chr7g0255621 40.072 277 157 4 2 271 291 565 6.09e-64 211
Msa0509510 MtrunA17_Chr4g0056431 40.690 290 159 5 2 280 300 587 1.13e-63 210
Msa0509510 MtrunA17_Chr2g0284701 39.024 287 163 4 3 277 308 594 1.15e-63 211
Msa0509510 MtrunA17_Chr8g0375341 40.727 275 158 2 4 274 312 585 2.16e-63 209
Msa0509510 MtrunA17_Chr6g0451841 39.062 256 155 1 20 274 284 539 2.48e-63 208
Msa0509510 MtrunA17_Chr8g0375351 40.364 275 159 2 4 274 312 585 4.51e-63 209
Msa0509510 MtrunA17_Chr5g0422881 41.091 275 158 3 2 272 291 565 1.03e-61 205
Msa0509510 MtrunA17_Chr7g0255601 37.542 301 176 5 2 292 298 596 2.01e-61 205
Msa0509510 MtrunA17_Chr3g0142091 41.071 280 152 5 1 278 298 566 2.68e-61 204
Msa0509510 MtrunA17_Chr8g0375361 39.927 273 159 2 4 272 311 582 5.11e-61 203
Msa0509510 MtrunA17_Chr8g0375321 38.545 275 164 2 4 274 309 582 8.48e-61 202
Msa0509510 MtrunA17_Chr5g0415791 38.384 297 174 3 2 292 305 598 1.72e-59 199
Msa0509510 MtrunA17_Chr5g0399071 37.324 284 168 5 2 280 299 577 4.21e-58 196
Msa0509510 MtrunA17_Chr7g0271221 41.091 275 151 6 2 273 282 548 1.84e-57 194
Msa0509510 MtrunA17_Chr8g0375331 39.273 275 162 2 4 274 296 569 6.68e-57 192
Msa0509510 MtrunA17_Chr1g0193391 39.493 276 155 5 2 273 281 548 1.68e-55 189
Msa0509510 MtrunA17_Chr7g0255611 36.093 302 182 5 3 295 301 600 5.45e-55 187
Msa0509510 MtrunA17_Chr7g0218851 36.194 268 161 4 4 268 321 581 6.84e-55 187
Msa0509510 MtrunA17_Chr5g0415961 34.686 271 169 4 2 271 309 572 4.83e-54 184
Msa0509510 MtrunA17_Chr8g0379971 39.519 291 157 5 3 278 312 598 6.41e-54 185
Msa0509510 MtrunA17_Chr2g0331521 35.636 275 168 3 2 268 290 563 1.58e-53 183
Msa0509510 MtrunA17_Chr7g0214731 36.577 298 176 7 3 290 340 634 1.84e-53 184
Msa0509510 MtrunA17_Chr1g0213711 37.918 269 158 4 3 268 292 554 2.30e-53 183
Msa0509510 MtrunA17_Chr8g0362801 34.545 275 173 3 2 271 189 461 3.18e-53 180
Msa0509510 MtrunA17_Chr4g0059991 36.949 295 176 5 2 286 294 588 4.98e-53 182
Msa0509510 MtrunA17_Chr4g0063591 35.570 298 175 5 2 292 287 574 7.60e-53 181
Msa0509510 MtrunA17_Chr8g0379991 39.236 288 163 5 3 278 284 571 9.40e-53 181
Msa0509510 MtrunA17_Chr8g0390331 38.828 273 157 5 4 268 283 553 1.12e-52 181
Msa0509510 MtrunA17_Chr3g0133341 42.066 271 147 5 2 271 289 550 1.51e-52 181
Msa0509510 MtrunA17_Chr4g0069581 37.801 291 170 5 2 289 253 535 2.04e-52 180
Msa0509510 MtrunA17_Chr5g0439381 34.828 290 171 6 2 286 295 571 2.99e-52 180
Msa0509510 MtrunA17_Chr4g0059971 36.299 281 169 5 2 272 305 585 3.45e-52 180
Msa0509510 MtrunA17_Chr7g0214461 35.075 268 164 5 4 268 351 611 4.73e-52 180
Msa0509510 MtrunA17_Chr2g0276751 36.620 284 164 6 2 279 298 571 7.81e-52 179
Msa0509510 MtrunA17_Chr4g0060071 33.086 269 173 4 4 271 36 298 1.06e-50 169
Msa0509510 MtrunA17_Chr8g0362711 33.704 270 168 4 4 271 311 571 1.78e-49 172
Msa0509510 MtrunA17_Chr7g0217461 39.716 282 154 7 3 272 295 572 1.10e-48 171
Msa0509510 MtrunA17_Chr4g0054891 36.704 267 155 5 3 262 383 642 1.92e-48 171
Msa0509510 MtrunA17_Chr4g0011471 35.401 274 163 5 4 268 288 556 3.95e-48 169
Msa0509510 MtrunA17_Chr5g0400371 35.764 288 168 7 3 279 385 666 5.89e-48 169
Msa0509510 MtrunA17_Chr1g0157601 33.455 275 174 4 2 268 280 553 1.96e-46 164
Msa0509510 MtrunA17_Chr1g0157621 32.117 274 178 3 2 268 245 517 4.20e-46 163
Msa0509510 MtrunA17_Chr4g0059981 33.670 297 186 6 2 287 302 598 1.29e-43 157
Msa0509510 MtrunA17_Chr1g0147631 33.455 275 172 3 2 268 293 564 1.55e-43 156
Msa0509510 MtrunA17_Chr4g0003761 31.884 276 176 5 2 268 297 569 2.21e-43 156
Msa0509510 MtrunA17_Chr1g0157611 32.000 275 178 3 2 268 281 554 6.33e-43 154
Msa0509510 MtrunA17_Chr4g0011041 32.852 277 167 8 4 268 309 578 8.82e-43 154
Msa0509510 MtrunA17_Chr8g0362781 30.526 285 185 5 2 276 305 586 1.44e-42 154
Msa0509510 MtrunA17_Chr7g0261751 47.368 171 87 1 5 175 344 511 9.55e-41 148
Msa0509510 MtrunA17_Chr2g0331511 31.884 276 176 5 2 268 290 562 1.34e-40 149
Msa0509510 MtrunA17_Chr5g0415841 30.182 275 185 3 2 271 187 459 4.06e-40 145
Msa0509510 MtrunA17_Chr2g0331481 30.435 299 185 7 2 280 292 587 8.72e-40 147
Msa0509510 MtrunA17_Chr2g0331471 30.435 299 185 7 2 280 355 650 1.81e-39 146
Msa0509510 MtrunA17_Chr2g0331461 29.900 301 196 7 2 290 292 589 3.63e-36 137
Msa0509510 MtrunA17_Chr2g0325961 29.242 277 174 5 2 272 289 549 1.64e-34 131
Msa0509510 MtrunA17_Chr1g0177611 28.102 274 181 5 2 268 171 435 4.78e-34 129
Msa0509510 MtrunA17_Chr2g0325951 28.777 278 175 6 2 272 287 548 1.52e-33 129
Msa0509510 MtrunA17_Chr1g0177591 28.102 274 181 5 2 268 300 564 2.58e-33 128
Msa0509510 MtrunA17_Chr7g0235521 28.364 275 186 4 2 269 187 457 5.08e-33 126
Msa0509510 MtrunA17_Chr7g0234381 29.588 267 169 3 2 268 171 418 7.17e-33 125
Msa0509510 MtrunA17_Chr7g0240271 29.091 275 184 4 2 269 298 568 1.00e-32 126
Msa0509510 MtrunA17_Chr7g0240131 28.364 275 186 4 2 269 187 457 1.07e-32 125
Msa0509510 MtrunA17_Chr7g0240181 28.364 275 186 4 2 269 187 457 1.16e-32 125
Msa0509510 MtrunA17_Chr7g0240211 28.364 275 186 4 2 269 187 457 1.18e-32 125
Msa0509510 MtrunA17_Chr2g0326211 28.364 275 175 5 4 272 290 548 3.16e-32 125
Msa0509510 MtrunA17_Chr4g0060001 27.273 297 203 5 2 289 299 591 6.60e-32 124
Msa0509510 MtrunA17_Chr1g0177631 27.636 275 181 5 2 268 171 435 2.02e-31 121
Msa0509510 MtrunA17_Chr7g0234151 28.464 267 172 3 2 268 171 418 6.00e-31 120
Msa0509510 MtrunA17_Chr7g0234181 27.341 267 175 3 2 268 166 413 2.08e-30 118
Msa0509510 MtrunA17_Chr7g0240281 29.592 294 196 4 2 288 300 589 6.16e-29 116
Msa0509510 MtrunA17_Chr7g0261831 50.000 114 48 2 4 114 47 154 2.01e-27 106
Msa0509510 MtrunA17_Chr7g0240151 27.372 274 172 5 2 269 187 439 2.68e-27 110
Msa0509510 MtrunA17_Chr2g0326221 26.860 242 140 6 34 271 15 223 1.45e-21 90.9
Msa0509510 MtrunA17_Chr1g0147581 36.441 118 68 3 129 245 5 116 4.12e-15 70.5
Msa0509510 MtrunA17_Chr7g0261821 43.284 67 38 0 209 275 1 67 4.75e-14 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0509510 AT2G40460.1 71.769 294 74 3 3 294 293 579 2.89e-140 408
Msa0509510 AT5G01180.2 45.255 274 145 3 5 274 294 566 1.58e-81 257
Msa0509510 AT5G01180.3 45.255 274 145 3 5 274 294 566 1.58e-81 257
Msa0509510 AT5G01180.1 45.255 274 145 3 5 274 294 566 1.58e-81 257
Msa0509510 AT5G46050.2 47.735 287 139 5 4 286 188 467 1.59e-75 239
Msa0509510 AT3G54450.1 42.545 275 152 4 2 272 271 543 3.63e-75 240
Msa0509510 AT5G46050.1 47.735 287 139 5 4 286 300 579 5.06e-74 238
Msa0509510 AT3G54140.1 43.321 277 152 3 4 276 293 568 7.84e-74 237
Msa0509510 AT3G54140.2 43.321 277 152 3 4 276 293 568 7.84e-74 237
Msa0509510 AT1G72140.1 40.441 272 149 2 2 272 294 553 2.40e-72 233
Msa0509510 AT1G22540.1 40.856 257 151 1 20 275 300 556 5.65e-71 229
Msa0509510 AT1G72130.2 38.321 274 151 2 2 275 164 419 3.03e-70 223
Msa0509510 AT1G72130.3 38.321 274 151 2 2 275 164 419 3.03e-70 223
Msa0509510 AT5G46040.1 47.387 287 142 5 4 288 300 579 1.70e-69 226
Msa0509510 AT1G72130.1 38.321 274 151 2 2 275 282 537 5.91e-69 223
Msa0509510 AT3G53960.1 36.877 301 177 5 2 296 301 594 7.37e-67 219
Msa0509510 AT2G02040.1 40.580 276 159 3 4 275 311 585 3.76e-66 217
Msa0509510 AT1G62200.1 41.606 274 147 4 3 272 324 588 8.00e-65 214
Msa0509510 AT1G62200.2 42.125 273 145 4 4 272 354 617 1.09e-64 214
Msa0509510 AT1G62200.3 42.125 273 145 4 4 272 368 631 1.23e-64 214
Msa0509510 AT1G22550.1 37.868 272 163 2 2 272 294 560 4.90e-64 211
Msa0509510 AT1G68570.2 39.542 306 168 5 2 292 262 565 1.14e-63 210
Msa0509510 AT1G72120.1 41.264 269 155 2 5 272 287 553 1.35e-63 210
Msa0509510 AT1G68570.1 39.542 306 168 5 2 292 292 595 2.03e-63 210
Msa0509510 AT2G02020.1 41.199 267 148 5 11 272 282 544 3.19e-61 203
Msa0509510 AT1G69870.1 40.433 277 154 3 2 271 322 594 4.95e-61 204
Msa0509510 AT1G72125.1 39.338 272 162 2 2 272 288 557 6.56e-61 203
Msa0509510 AT2G37900.2 38.686 274 155 4 2 271 223 487 1.05e-59 198
Msa0509510 AT1G22570.2 37.868 272 159 3 2 272 262 524 1.77e-59 198
Msa0509510 AT1G22570.1 37.868 272 159 3 2 272 299 561 4.82e-59 198
Msa0509510 AT2G37900.1 38.686 274 155 4 2 271 302 566 5.72e-59 198
Msa0509510 AT5G14940.1 37.402 254 156 2 30 282 301 552 1.61e-58 196
Msa0509510 AT3G21670.1 38.267 277 152 6 4 273 296 560 1.27e-53 184
Msa0509510 AT2G02020.2 42.661 218 120 3 56 272 310 523 1.58e-53 182
Msa0509510 AT1G27040.3 36.327 245 155 1 26 270 285 528 1.62e-53 183
Msa0509510 AT1G33440.1 36.170 282 163 5 2 276 304 575 3.55e-53 183
Msa0509510 AT1G27040.1 36.327 245 155 1 26 270 317 560 3.74e-53 182
Msa0509510 AT1G27040.2 36.327 245 155 1 26 270 313 556 4.31e-53 182
Msa0509510 AT1G69850.1 34.328 268 171 3 10 276 321 584 5.75e-53 182
Msa0509510 AT2G26690.2 37.546 269 154 5 2 262 254 516 3.01e-52 179
Msa0509510 AT2G26690.3 37.546 269 154 5 2 262 242 504 3.39e-52 179
Msa0509510 AT1G32450.1 39.209 278 152 6 2 268 310 581 5.53e-52 180
Msa0509510 AT2G26690.1 37.546 269 154 5 2 262 287 549 5.57e-52 179
Msa0509510 AT3G01350.1 34.182 275 173 3 13 279 285 559 7.52e-52 179
Msa0509510 AT1G18880.1 35.640 289 175 4 2 279 286 574 1.61e-51 178
Msa0509510 AT3G47960.1 38.078 281 163 5 2 271 328 608 2.05e-49 173
Msa0509510 AT1G12110.1 35.689 283 169 6 2 279 301 575 3.85e-49 172
Msa0509510 AT4G21680.1 36.749 283 168 5 3 275 296 577 5.39e-49 172
Msa0509510 AT1G59740.1 37.453 267 157 5 2 265 312 571 2.06e-48 170
Msa0509510 AT5G62680.1 37.979 287 167 5 2 277 312 598 1.15e-46 166
Msa0509510 AT5G13400.1 36.749 283 172 6 3 280 341 621 1.50e-46 166
Msa0509510 AT5G19640.1 35.424 271 157 7 2 268 325 581 3.30e-46 164
Msa0509510 AT1G27080.2 34.050 279 167 4 2 274 242 509 1.22e-45 162
Msa0509510 AT1G27080.1 34.050 279 167 4 2 274 284 551 2.51e-45 161
Msa0509510 AT5G62730.2 32.677 254 164 3 26 273 276 528 7.01e-45 159
Msa0509510 AT5G62730.1 32.677 254 164 3 26 273 335 587 1.55e-44 159
Msa0509510 AT1G52190.1 32.734 278 175 6 2 268 290 566 2.53e-44 159
Msa0509510 AT3G45650.1 32.971 276 172 4 2 272 277 544 3.64e-42 152
Msa0509510 AT3G45660.1 33.333 276 171 3 2 272 276 543 4.48e-41 150
Msa0509510 AT3G45660.3 33.333 276 171 3 2 272 276 543 4.48e-41 150
Msa0509510 AT3G45660.2 33.333 276 171 3 2 272 297 564 5.54e-41 150
Msa0509510 AT3G16180.1 33.574 277 172 6 2 268 291 565 8.82e-41 149
Msa0509510 AT3G25260.1 32.836 268 153 5 2 268 274 515 8.16e-39 143
Msa0509510 AT3G45650.2 30.132 302 172 5 2 272 277 570 8.49e-37 138
Msa0509510 AT3G25280.1 28.464 267 173 3 2 268 273 521 2.75e-36 136
Msa0509510 AT1G69860.1 33.213 277 174 4 2 276 287 554 3.24e-35 134
Msa0509510 AT5G11570.1 32.558 258 162 6 13 268 229 476 4.52e-35 132
Msa0509510 AT3G45720.1 30.576 278 169 6 2 272 281 541 1.50e-32 126
Msa0509510 AT5G28470.2 29.242 277 179 7 2 268 284 553 1.73e-32 126
Msa0509510 AT3G45680.1 29.749 279 170 6 2 272 283 543 2.40e-31 123
Msa0509510 AT5G28470.1 28.520 277 179 8 2 268 284 551 2.73e-30 120
Msa0509510 AT3G45700.1 26.523 279 173 4 2 272 279 533 4.64e-29 116
Msa0509510 AT3G45710.1 28.777 278 175 6 2 272 284 545 5.66e-29 116
Msa0509510 AT2G38100.2 27.500 280 170 10 4 268 223 484 3.30e-20 90.9
Msa0509510 AT2G38100.1 27.500 280 170 10 4 268 239 500 5.25e-20 90.5
Msa0509510 AT2G38100.3 27.500 280 170 10 4 268 245 506 5.90e-20 90.1
Msa0509510 AT3G45690.1 28.409 264 138 9 2 263 280 494 1.07e-19 89.4

Find 59 sgRNAs with CRISPR-Local

Find 140 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTCACTTAGATTACTATTA+TGG 0.130549 3_4:+57941425 Msa0509510:CDS
TTTCAATGCCATTGGATTAT+TGG 0.142348 3_4:+57941235 Msa0509510:CDS
TTACCACAATATGTTCTTAT+TGG 0.230143 3_4:+57941200 Msa0509510:CDS
TTGTCCCTATGAGTATATTT+TGG 0.246334 3_4:+57941174 Msa0509510:CDS
ATAACCATGCAATGCAATTC+AGG 0.274041 3_4:+57940694 None:intergenic
CCAAGACTTTGCATGTCTTC+AGG 0.277774 3_4:-57941278 None:intergenic
TCTACTTGATTTACTGTCAT+TGG 0.286034 3_4:-57940774 None:intergenic
CTCACTTAGATTACTATTAT+GGG 0.299840 3_4:+57941426 Msa0509510:CDS
CACTGATTCCAAGCACCATT+TGG 0.336231 3_4:+57940841 Msa0509510:CDS
TCAGTGTTACTAACCATATT+AGG 0.340683 3_4:-57940824 None:intergenic
TCCTTGGTATGCTCCTAATA+TGG 0.344882 3_4:+57940811 Msa0509510:CDS
AGGACCAAGGTTTCTGTCTA+AGG 0.369834 3_4:-57940901 None:intergenic
ACTTTCTTCACAAGTGGAAT+TGG 0.371149 3_4:+57941305 Msa0509510:CDS
CTTGTCAAGTGTTAATTTGT+TGG 0.372916 3_4:+57941460 Msa0509510:CDS
CTTCTTGAGGAACCAGTTGT+AGG 0.391292 3_4:-57940747 None:intergenic
AACAACCAAAATATACTCAT+AGG 0.391678 3_4:-57941179 None:intergenic
TTACTTCAAAGACTTGGAAT+AGG 0.391905 3_4:+57941053 Msa0509510:CDS
AATGGAAGGTAATTCAACTT+TGG 0.407537 3_4:+57941556 Msa0509510:CDS
AGAAGCACTTTGTGTTCAAA+TGG 0.412642 3_4:+57941538 Msa0509510:CDS
ACAATGACTGATAAGATAAC+AGG 0.426895 3_4:+57941359 Msa0509510:CDS
CTCATAGGGACAATATCTTT+AGG 0.436414 3_4:-57941164 None:intergenic
TCACAAGTGGAATTGGTGTT+GGG 0.437948 3_4:+57941312 Msa0509510:CDS
TTCACAAGTGGAATTGGTGT+TGG 0.438075 3_4:+57941311 Msa0509510:CDS
ATGACAGTAAATCAAGTAGA+AGG 0.439592 3_4:+57940777 Msa0509510:CDS
CCGTTCATGCGCCAGAAAAC+CGG 0.443452 3_4:+57941011 Msa0509510:CDS
ACTGATTCCAAGCACCATTT+GGG 0.443685 3_4:+57940842 Msa0509510:CDS
TCAACTTTGGATGCATCTCT+TGG 0.444482 3_4:+57941569 Msa0509510:CDS
TGTGATTCCTCTCGGGTGGC+CGG 0.458648 3_4:-57941030 None:intergenic
TGAAGTAATGTGATTCCTCT+CGG 0.459981 3_4:-57941038 None:intergenic
ATTAAAGAAGATCCTACAAC+TGG 0.473810 3_4:+57940735 Msa0509510:CDS
CACTGAGAGCAGCATGGATA+GGG 0.474994 3_4:-57940964 None:intergenic
CAATTGCAATGGCTATGATC+TGG 0.475158 3_4:-57941085 None:intergenic
CCTGAAGACATGCAAAGTCT+TGG 0.489343 3_4:+57941278 Msa0509510:CDS
TGTCATTGGTGCTCTTCTTG+AGG 0.497730 3_4:-57940760 None:intergenic
ATTTGTGCCCAAATGGTGCT+TGG 0.502978 3_4:-57940849 None:intergenic
GAAGGAGCAAAGCTAATCCT+TGG 0.508830 3_4:+57940795 Msa0509510:CDS
ATCACATTACTTCAAAGACT+TGG 0.515956 3_4:+57941047 Msa0509510:CDS
GAAGTAATGTGATTCCTCTC+GGG 0.522163 3_4:-57941037 None:intergenic
AAAATCCCAGCAGCATCTCT+AGG 0.522560 3_4:+57940930 Msa0509510:CDS
AGTGTTGATTTGTGCCCAAA+TGG 0.524157 3_4:-57940856 None:intergenic
AAGTAGATACATTTACAAGA+AGG 0.524961 3_4:+57941499 Msa0509510:CDS
GGAACAACTTTCTTCACAAG+TGG 0.532928 3_4:+57941299 Msa0509510:CDS
GCACTGAGAGCAGCATGGAT+AGG 0.533967 3_4:-57940965 None:intergenic
GCACTTTGTGTTCAAATGGA+AGG 0.535871 3_4:+57941542 Msa0509510:CDS
GAAGAGGGACTAGAAAGAGT+TGG 0.543314 3_4:+57941381 Msa0509510:CDS
ACTGATAAGATAACAGGAAG+AGG 0.551715 3_4:+57941365 Msa0509510:CDS
AGCTGCCTAGAGATGCTGCT+GGG 0.554054 3_4:-57940935 None:intergenic
ACAACCAAAATATACTCATA+GGG 0.560334 3_4:-57941178 None:intergenic
AAGCTGCCTAGAGATGCTGC+TGG 0.575379 3_4:-57940936 None:intergenic
TCTCAGTGCCAATGTATGAC+CGG 0.581455 3_4:+57940979 Msa0509510:CDS
GAAGAATTCCAATAATCCAA+TGG 0.598605 3_4:-57941243 None:intergenic
ACTACCTTAGACAGAAACCT+TGG 0.616776 3_4:+57940897 Msa0509510:CDS
GTAATGTGATTCCTCTCGGG+TGG 0.620286 3_4:-57941034 None:intergenic
CAGAAAACCGGCCACCCGAG+AGG 0.625344 3_4:+57941023 Msa0509510:CDS
CTGATAAGATAACAGGAAGA+GGG 0.626089 3_4:+57941366 Msa0509510:CDS
TACTGCATAAGCAATTGCAA+TGG 0.627930 3_4:-57941096 None:intergenic
CATTGGCACTGAGAGCAGCA+TGG 0.639366 3_4:-57940970 None:intergenic
ATACCAATAAGAACATATTG+TGG 0.640019 3_4:-57941203 None:intergenic
ACCATATTAGGAGCATACCA+AGG 0.712720 3_4:-57940812 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAAAAGAGAATCACATTTT+TGG + chr3_4:57941140-57941159 Msa0509510:CDS 20.0%
!!! ATAAAAGAGAATCACATTTT+TGG + chr3_4:57941140-57941159 Msa0509510:CDS 20.0%
! ACAACCAAAATATACTCATA+GGG - chr3_4:57941181-57941200 None:intergenic 25.0%
! AACAACCAAAATATACTCAT+AGG - chr3_4:57941182-57941201 None:intergenic 25.0%
! TTACCACAATATGTTCTTAT+TGG + chr3_4:57941200-57941219 Msa0509510:CDS 25.0%
! ATACCAATAAGAACATATTG+TGG - chr3_4:57941206-57941225 None:intergenic 25.0%
!!! GAATTTCTTGAACAGTTTTT+TGG + chr3_4:57941334-57941353 Msa0509510:CDS 25.0%
! TCTCACTTAGATTACTATTA+TGG + chr3_4:57941425-57941444 Msa0509510:CDS 25.0%
! CTCACTTAGATTACTATTAT+GGG + chr3_4:57941426-57941445 Msa0509510:CDS 25.0%
!!! TTAATTTGTTGGTGTTTTTG+TGG + chr3_4:57941471-57941490 Msa0509510:CDS 25.0%
!!! TAATTTGTTGGTGTTTTTGT+GGG + chr3_4:57941472-57941491 Msa0509510:CDS 25.0%
! AAGTAGATACATTTACAAGA+AGG + chr3_4:57941499-57941518 Msa0509510:CDS 25.0%
! ACAACCAAAATATACTCATA+GGG - chr3_4:57941181-57941200 None:intergenic 25.0%
! AACAACCAAAATATACTCAT+AGG - chr3_4:57941182-57941201 None:intergenic 25.0%
! TTACCACAATATGTTCTTAT+TGG + chr3_4:57941200-57941219 Msa0509510:CDS 25.0%
! ATACCAATAAGAACATATTG+TGG - chr3_4:57941206-57941225 None:intergenic 25.0%
!!! GAATTTCTTGAACAGTTTTT+TGG + chr3_4:57941334-57941353 Msa0509510:CDS 25.0%
! TCTCACTTAGATTACTATTA+TGG + chr3_4:57941425-57941444 Msa0509510:CDS 25.0%
! CTCACTTAGATTACTATTAT+GGG + chr3_4:57941426-57941445 Msa0509510:CDS 25.0%
!!! TTAATTTGTTGGTGTTTTTG+TGG + chr3_4:57941471-57941490 Msa0509510:CDS 25.0%
!!! TAATTTGTTGGTGTTTTTGT+GGG + chr3_4:57941472-57941491 Msa0509510:CDS 25.0%
! AAGTAGATACATTTACAAGA+AGG + chr3_4:57941499-57941518 Msa0509510:CDS 25.0%
ATTAAAGAAGATCCTACAAC+TGG + chr3_4:57940735-57940754 Msa0509510:CDS 30.0%
TCTACTTGATTTACTGTCAT+TGG - chr3_4:57940777-57940796 None:intergenic 30.0%
ATGACAGTAAATCAAGTAGA+AGG + chr3_4:57940777-57940796 Msa0509510:CDS 30.0%
! TCAGTGTTACTAACCATATT+AGG - chr3_4:57940827-57940846 None:intergenic 30.0%
! AACACTCTTTTTGTGAAACA+AGG + chr3_4:57940873-57940892 Msa0509510:CDS 30.0%
ATCACATTACTTCAAAGACT+TGG + chr3_4:57941047-57941066 Msa0509510:CDS 30.0%
TTACTTCAAAGACTTGGAAT+AGG + chr3_4:57941053-57941072 Msa0509510:CDS 30.0%
! TTGTCCCTATGAGTATATTT+TGG + chr3_4:57941174-57941193 Msa0509510:CDS 30.0%
TTTCAATGCCATTGGATTAT+TGG + chr3_4:57941235-57941254 Msa0509510:CDS 30.0%
GAAGAATTCCAATAATCCAA+TGG - chr3_4:57941246-57941265 None:intergenic 30.0%
ACAATGACTGATAAGATAAC+AGG + chr3_4:57941359-57941378 Msa0509510:CDS 30.0%
!! CTTGTCAAGTGTTAATTTGT+TGG + chr3_4:57941460-57941479 Msa0509510:CDS 30.0%
AATGGAAGGTAATTCAACTT+TGG + chr3_4:57941556-57941575 Msa0509510:CDS 30.0%
ATTAAAGAAGATCCTACAAC+TGG + chr3_4:57940735-57940754 Msa0509510:CDS 30.0%
TCTACTTGATTTACTGTCAT+TGG - chr3_4:57940777-57940796 None:intergenic 30.0%
ATGACAGTAAATCAAGTAGA+AGG + chr3_4:57940777-57940796 Msa0509510:CDS 30.0%
! TCAGTGTTACTAACCATATT+AGG - chr3_4:57940827-57940846 None:intergenic 30.0%
! AACACTCTTTTTGTGAAACA+AGG + chr3_4:57940873-57940892 Msa0509510:CDS 30.0%
ATCACATTACTTCAAAGACT+TGG + chr3_4:57941047-57941066 Msa0509510:CDS 30.0%
TTACTTCAAAGACTTGGAAT+AGG + chr3_4:57941053-57941072 Msa0509510:CDS 30.0%
! TTGTCCCTATGAGTATATTT+TGG + chr3_4:57941174-57941193 Msa0509510:CDS 30.0%
TTTCAATGCCATTGGATTAT+TGG + chr3_4:57941235-57941254 Msa0509510:CDS 30.0%
GAAGAATTCCAATAATCCAA+TGG - chr3_4:57941246-57941265 None:intergenic 30.0%
ACAATGACTGATAAGATAAC+AGG + chr3_4:57941359-57941378 Msa0509510:CDS 30.0%
!! CTTGTCAAGTGTTAATTTGT+TGG + chr3_4:57941460-57941479 Msa0509510:CDS 30.0%
AATGGAAGGTAATTCAACTT+TGG + chr3_4:57941556-57941575 Msa0509510:CDS 30.0%
!!! GGATTTTAAAATCAGGACCA+AGG - chr3_4:57940917-57940936 None:intergenic 35.0%
TGAAGTAATGTGATTCCTCT+CGG - chr3_4:57941041-57941060 None:intergenic 35.0%
TACTGCATAAGCAATTGCAA+TGG - chr3_4:57941099-57941118 None:intergenic 35.0%
CTCATAGGGACAATATCTTT+AGG - chr3_4:57941167-57941186 None:intergenic 35.0%
ACTTTCTTCACAAGTGGAAT+TGG + chr3_4:57941305-57941324 Msa0509510:CDS 35.0%
ACTGATAAGATAACAGGAAG+AGG + chr3_4:57941365-57941384 Msa0509510:CDS 35.0%
CTGATAAGATAACAGGAAGA+GGG + chr3_4:57941366-57941385 Msa0509510:CDS 35.0%
!! AGAAGCACTTTGTGTTCAAA+TGG + chr3_4:57941538-57941557 Msa0509510:CDS 35.0%
!!! GGATTTTAAAATCAGGACCA+AGG - chr3_4:57940917-57940936 None:intergenic 35.0%
TGAAGTAATGTGATTCCTCT+CGG - chr3_4:57941041-57941060 None:intergenic 35.0%
TACTGCATAAGCAATTGCAA+TGG - chr3_4:57941099-57941118 None:intergenic 35.0%
CTCATAGGGACAATATCTTT+AGG - chr3_4:57941167-57941186 None:intergenic 35.0%
ACTTTCTTCACAAGTGGAAT+TGG + chr3_4:57941305-57941324 Msa0509510:CDS 35.0%
ACTGATAAGATAACAGGAAG+AGG + chr3_4:57941365-57941384 Msa0509510:CDS 35.0%
CTGATAAGATAACAGGAAGA+GGG + chr3_4:57941366-57941385 Msa0509510:CDS 35.0%
!! AGAAGCACTTTGTGTTCAAA+TGG + chr3_4:57941538-57941557 Msa0509510:CDS 35.0%
TCCTTGGTATGCTCCTAATA+TGG + chr3_4:57940811-57940830 Msa0509510:CDS 40.0%
! ACCATATTAGGAGCATACCA+AGG - chr3_4:57940815-57940834 None:intergenic 40.0%
! ACTGATTCCAAGCACCATTT+GGG + chr3_4:57940842-57940861 Msa0509510:CDS 40.0%
!! AGTGTTGATTTGTGCCCAAA+TGG - chr3_4:57940859-57940878 None:intergenic 40.0%
ACTACCTTAGACAGAAACCT+TGG + chr3_4:57940897-57940916 Msa0509510:CDS 40.0%
!!! GCTGCTGGGATTTTAAAATC+AGG - chr3_4:57940924-57940943 None:intergenic 40.0%
ACGAAAAACCGGTCATACAT+TGG - chr3_4:57940990-57941009 None:intergenic 40.0%
GAAGTAATGTGATTCCTCTC+GGG - chr3_4:57941040-57941059 None:intergenic 40.0%
CAATTGCAATGGCTATGATC+TGG - chr3_4:57941088-57941107 None:intergenic 40.0%
! GCAGATGTTTTCAATGCCAT+TGG + chr3_4:57941227-57941246 Msa0509510:CDS 40.0%
GGAACAACTTTCTTCACAAG+TGG + chr3_4:57941299-57941318 Msa0509510:CDS 40.0%
TTCACAAGTGGAATTGGTGT+TGG + chr3_4:57941311-57941330 Msa0509510:CDS 40.0%
! TCACAAGTGGAATTGGTGTT+GGG + chr3_4:57941312-57941331 Msa0509510:CDS 40.0%
GCACTTTGTGTTCAAATGGA+AGG + chr3_4:57941542-57941561 Msa0509510:CDS 40.0%
TCAACTTTGGATGCATCTCT+TGG + chr3_4:57941569-57941588 Msa0509510:CDS 40.0%
TCCTTGGTATGCTCCTAATA+TGG + chr3_4:57940811-57940830 Msa0509510:CDS 40.0%
! ACCATATTAGGAGCATACCA+AGG - chr3_4:57940815-57940834 None:intergenic 40.0%
! ACTGATTCCAAGCACCATTT+GGG + chr3_4:57940842-57940861 Msa0509510:CDS 40.0%
!! AGTGTTGATTTGTGCCCAAA+TGG - chr3_4:57940859-57940878 None:intergenic 40.0%
ACTACCTTAGACAGAAACCT+TGG + chr3_4:57940897-57940916 Msa0509510:CDS 40.0%
!!! GCTGCTGGGATTTTAAAATC+AGG - chr3_4:57940924-57940943 None:intergenic 40.0%
ACGAAAAACCGGTCATACAT+TGG - chr3_4:57940990-57941009 None:intergenic 40.0%
GAAGTAATGTGATTCCTCTC+GGG - chr3_4:57941040-57941059 None:intergenic 40.0%
CAATTGCAATGGCTATGATC+TGG - chr3_4:57941088-57941107 None:intergenic 40.0%
! GCAGATGTTTTCAATGCCAT+TGG + chr3_4:57941227-57941246 Msa0509510:CDS 40.0%
GGAACAACTTTCTTCACAAG+TGG + chr3_4:57941299-57941318 Msa0509510:CDS 40.0%
TTCACAAGTGGAATTGGTGT+TGG + chr3_4:57941311-57941330 Msa0509510:CDS 40.0%
! TCACAAGTGGAATTGGTGTT+GGG + chr3_4:57941312-57941331 Msa0509510:CDS 40.0%
GCACTTTGTGTTCAAATGGA+AGG + chr3_4:57941542-57941561 Msa0509510:CDS 40.0%
TCAACTTTGGATGCATCTCT+TGG + chr3_4:57941569-57941588 Msa0509510:CDS 40.0%
CTTCTTGAGGAACCAGTTGT+AGG - chr3_4:57940750-57940769 None:intergenic 45.0%
! TGTCATTGGTGCTCTTCTTG+AGG - chr3_4:57940763-57940782 None:intergenic 45.0%
GAAGGAGCAAAGCTAATCCT+TGG + chr3_4:57940795-57940814 Msa0509510:CDS 45.0%
!! CACTGATTCCAAGCACCATT+TGG + chr3_4:57940841-57940860 Msa0509510:CDS 45.0%
ATTTGTGCCCAAATGGTGCT+TGG - chr3_4:57940852-57940871 None:intergenic 45.0%
AGGACCAAGGTTTCTGTCTA+AGG - chr3_4:57940904-57940923 None:intergenic 45.0%
AAAATCCCAGCAGCATCTCT+AGG + chr3_4:57940930-57940949 Msa0509510:CDS 45.0%
TCTCAGTGCCAATGTATGAC+CGG + chr3_4:57940979-57940998 Msa0509510:CDS 45.0%
GCATGAACGGTACGAAAAAC+CGG - chr3_4:57941001-57941020 None:intergenic 45.0%
CCAAGACTTTGCATGTCTTC+AGG - chr3_4:57941281-57941300 None:intergenic 45.0%
CCTGAAGACATGCAAAGTCT+TGG + chr3_4:57941278-57941297 Msa0509510:CDS 45.0%
GAAGAGGGACTAGAAAGAGT+TGG + chr3_4:57941381-57941400 Msa0509510:CDS 45.0%
CTTCTTGAGGAACCAGTTGT+AGG - chr3_4:57940750-57940769 None:intergenic 45.0%
! TGTCATTGGTGCTCTTCTTG+AGG - chr3_4:57940763-57940782 None:intergenic 45.0%
GAAGGAGCAAAGCTAATCCT+TGG + chr3_4:57940795-57940814 Msa0509510:CDS 45.0%
!! CACTGATTCCAAGCACCATT+TGG + chr3_4:57940841-57940860 Msa0509510:CDS 45.0%
ATTTGTGCCCAAATGGTGCT+TGG - chr3_4:57940852-57940871 None:intergenic 45.0%
AGGACCAAGGTTTCTGTCTA+AGG - chr3_4:57940904-57940923 None:intergenic 45.0%
AAAATCCCAGCAGCATCTCT+AGG + chr3_4:57940930-57940949 Msa0509510:CDS 45.0%
TCTCAGTGCCAATGTATGAC+CGG + chr3_4:57940979-57940998 Msa0509510:CDS 45.0%
GCATGAACGGTACGAAAAAC+CGG - chr3_4:57941001-57941020 None:intergenic 45.0%
CCAAGACTTTGCATGTCTTC+AGG - chr3_4:57941281-57941300 None:intergenic 45.0%
CCTGAAGACATGCAAAGTCT+TGG + chr3_4:57941278-57941297 Msa0509510:CDS 45.0%
GAAGAGGGACTAGAAAGAGT+TGG + chr3_4:57941381-57941400 Msa0509510:CDS 45.0%
CACTGAGAGCAGCATGGATA+GGG - chr3_4:57940967-57940986 None:intergenic 50.0%
GTAATGTGATTCCTCTCGGG+TGG - chr3_4:57941037-57941056 None:intergenic 50.0%
CACTGAGAGCAGCATGGATA+GGG - chr3_4:57940967-57940986 None:intergenic 50.0%
GTAATGTGATTCCTCTCGGG+TGG - chr3_4:57941037-57941056 None:intergenic 50.0%
AGCTGCCTAGAGATGCTGCT+GGG - chr3_4:57940938-57940957 None:intergenic 55.0%
AAGCTGCCTAGAGATGCTGC+TGG - chr3_4:57940939-57940958 None:intergenic 55.0%
GCACTGAGAGCAGCATGGAT+AGG - chr3_4:57940968-57940987 None:intergenic 55.0%
! CATTGGCACTGAGAGCAGCA+TGG - chr3_4:57940973-57940992 None:intergenic 55.0%
!! CCGGTTTTCTGGCGCATGAA+CGG - chr3_4:57941014-57941033 None:intergenic 55.0%
CCGTTCATGCGCCAGAAAAC+CGG + chr3_4:57941011-57941030 Msa0509510:CDS 55.0%
AGCTGCCTAGAGATGCTGCT+GGG - chr3_4:57940938-57940957 None:intergenic 55.0%
AAGCTGCCTAGAGATGCTGC+TGG - chr3_4:57940939-57940958 None:intergenic 55.0%
GCACTGAGAGCAGCATGGAT+AGG - chr3_4:57940968-57940987 None:intergenic 55.0%
! CATTGGCACTGAGAGCAGCA+TGG - chr3_4:57940973-57940992 None:intergenic 55.0%
!! CCGGTTTTCTGGCGCATGAA+CGG - chr3_4:57941014-57941033 None:intergenic 55.0%
CCGTTCATGCGCCAGAAAAC+CGG + chr3_4:57941011-57941030 Msa0509510:CDS 55.0%
TGTGATTCCTCTCGGGTGGC+CGG - chr3_4:57941033-57941052 None:intergenic 60.0%
TGTGATTCCTCTCGGGTGGC+CGG - chr3_4:57941033-57941052 None:intergenic 60.0%
!! CTCTCGGGTGGCCGGTTTTC+TGG - chr3_4:57941025-57941044 None:intergenic 65.0%
CAGAAAACCGGCCACCCGAG+AGG + chr3_4:57941023-57941042 Msa0509510:CDS 65.0%
!! CTCTCGGGTGGCCGGTTTTC+TGG - chr3_4:57941025-57941044 None:intergenic 65.0%
CAGAAAACCGGCCACCCGAG+AGG + chr3_4:57941023-57941042 Msa0509510:CDS 65.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 57940705 57941604 57940705 ID=Msa0509510;Name=Msa0509510
chr3_4 mRNA 57940705 57941604 57940705 ID=Msa0509510-mRNA-1;Parent=Msa0509510;Name=Msa0509510-mRNA-1;_AED=0.35;_eAED=0.36;_QI=0|-1|0|1|-1|1|1|0|299
chr3_4 exon 57940705 57941604 57940705 ID=Msa0509510-mRNA-1:exon:13317;Parent=Msa0509510-mRNA-1
chr3_4 CDS 57940705 57941604 57940705 ID=Msa0509510-mRNA-1:cds;Parent=Msa0509510-mRNA-1
Gene Sequence

>Msa0509510

ATGCAATTCAGGTTTTTGGACAAAGCTGCTATTAAAGAAGATCCTACAACTGGTTCCTCAAGAAGAGCACCAATGACAGTAAATCAAGTAGAAGGAGCAAAGCTAATCCTTGGTATGCTCCTAATATGGTTAGTAACACTGATTCCAAGCACCATTTGGGCACAAATCAACACTCTTTTTGTGAAACAAGGCACTACCTTAGACAGAAACCTTGGTCCTGATTTTAAAATCCCAGCAGCATCTCTAGGCAGCTTTGTAACCCTATCCATGCTGCTCTCAGTGCCAATGTATGACCGGTTTTTCGTACCGTTCATGCGCCAGAAAACCGGCCACCCGAGAGGAATCACATTACTTCAAAGACTTGGAATAGGATTTTCAATCCAGATCATAGCCATTGCAATTGCTTATGCAGTAGAAGTTAGAAGAATGCATGTGATAAAAGAGAATCACATTTTTGGTCCTAAAGATATTGTCCCTATGAGTATATTTTGGTTGTTACCACAATATGTTCTTATTGGTATAGCAGATGTTTTCAATGCCATTGGATTATTGGAATTCTTCTATGATCAATCTCCTGAAGACATGCAAAGTCTTGGAACAACTTTCTTCACAAGTGGAATTGGTGTTGGGAATTTCTTGAACAGTTTTTTGGTAACAATGACTGATAAGATAACAGGAAGAGGGACTAGAAAGAGTTGGATTGCTGATAACTTGAATGATTCTCACTTAGATTACTATTATGGGTTTCTTTTGATCTTGTCAAGTGTTAATTTGTTGGTGTTTTTGTGGGTTTCAAGTAGATACATTTACAAGAAGGAGTCAACAAGAATCAAAGAAGCACTTTGTGTTCAAATGGAAGGTAATTCAACTTTGGATGCATCTCTTGGCTTACAAGTATGA

Protein sequence

>Msa0509510

MQFRFLDKAAIKEDPTTGSSRRAPMTVNQVEGAKLILGMLLIWLVTLIPSTIWAQINTLFVKQGTTLDRNLGPDFKIPAASLGSFVTLSMLLSVPMYDRFFVPFMRQKTGHPRGITLLQRLGIGFSIQIIAIAIAYAVEVRRMHVIKENHIFGPKDIVPMSIFWLLPQYVLIGIADVFNAIGLLEFFYDQSPEDMQSLGTTFFTSGIGVGNFLNSFLVTMTDKITGRGTRKSWIADNLNDSHLDYYYGFLLILSSVNLLVFLWVSSRYIYKKESTRIKEALCVQMEGNSTLDASLGLQV*