AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0463960


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0463960 MtrunA17_Chr3g0114501 98.642 589 8 0 1 589 1 589 0.0 1199
Msa0463960 MtrunA17_Chr7g0261771 51.478 575 270 4 2 571 11 581 0.0 613
Msa0463960 MtrunA17_Chr7g0261881 50.685 584 277 5 2 580 7 584 0.0 611
Msa0463960 MtrunA17_Chr1g0187241 51.295 579 271 5 4 576 8 581 0.0 597
Msa0463960 MtrunA17_Chr1g0166711 51.552 580 273 4 6 581 9 584 0.0 596
Msa0463960 MtrunA17_Chr7g0261811 50.087 575 278 4 2 571 7 577 0.0 593
Msa0463960 MtrunA17_Chr7g0261791 50.799 563 267 4 4 560 11 569 0.0 580
Msa0463960 MtrunA17_Chr1g0166791 48.973 584 291 4 1 580 3 583 0.0 579
Msa0463960 MtrunA17_Chr7g0261851 49.576 589 284 6 5 585 11 594 0.0 579
Msa0463960 MtrunA17_Chr7g0241741 46.454 564 295 5 3 562 2 562 0.0 536
Msa0463960 MtrunA17_Chr1g0166741 47.865 562 279 5 6 563 11 562 0.0 535
Msa0463960 MtrunA17_Chr1g0166771 49.023 512 247 5 37 544 6 507 1.38e-177 513
Msa0463960 MtrunA17_Chr8g0375311 43.486 568 314 4 2 564 20 585 1.00e-173 505
Msa0463960 MtrunA17_Chr4g0005901 44.326 564 306 5 4 562 12 572 6.48e-172 500
Msa0463960 MtrunA17_Chr8g0375291 44.065 556 304 4 2 552 20 573 1.30e-168 492
Msa0463960 MtrunA17_Chr3g0104011 43.463 566 314 4 1 562 1 564 2.49e-166 485
Msa0463960 MtrunA17_Chr7g0261751 47.619 504 219 5 3 465 12 511 6.26e-163 475
Msa0463960 MtrunA17_Chr8g0375341 41.725 568 324 4 2 564 20 585 7.53e-160 469
Msa0463960 MtrunA17_Chr8g0375351 41.373 568 326 4 2 564 20 585 1.08e-159 469
Msa0463960 MtrunA17_Chr8g0375321 40.636 566 329 4 4 564 19 582 2.99e-159 468
Msa0463960 MtrunA17_Chr8g0375331 41.343 566 325 4 4 564 6 569 1.94e-155 457
Msa0463960 MtrunA17_Chr4g0014871 41.519 566 309 9 1 563 9 555 7.19e-154 453
Msa0463960 MtrunA17_Chr7g0261661 49.036 467 229 4 110 571 1 463 8.56e-154 451
Msa0463960 MtrunA17_Chr3g0112671 40.172 580 319 8 4 580 15 569 2.77e-152 450
Msa0463960 MtrunA17_Chr1g0166731 50.109 459 221 4 109 563 9 463 7.02e-151 442
Msa0463960 MtrunA17_Chr7g0240381 38.786 593 342 7 1 585 4 583 5.26e-150 444
Msa0463960 MtrunA17_Chr8g0375361 41.239 565 323 5 5 562 20 582 1.82e-149 443
Msa0463960 MtrunA17_Chr3g0077151 41.563 563 295 6 8 565 14 547 4.20e-149 441
Msa0463960 MtrunA17_Chr3g0112611 39.078 586 345 8 4 584 14 592 9.05e-148 439
Msa0463960 MtrunA17_Chr4g0008651 38.529 571 339 6 2 567 12 575 4.25e-147 437
Msa0463960 MtrunA17_Chr4g0014841 41.593 565 306 8 1 563 9 551 1.19e-145 432
Msa0463960 MtrunA17_Chr3g0142101 40.893 560 317 7 10 566 23 571 1.13e-144 431
Msa0463960 MtrunA17_Chr4g0014781 40.642 561 306 9 10 565 17 555 6.51e-144 427
Msa0463960 MtrunA17_Chr4g0014791 41.071 560 301 10 10 564 17 552 6.52e-143 425
Msa0463960 MtrunA17_Chr4g0014801 39.929 561 310 9 10 565 17 555 1.80e-140 419
Msa0463960 MtrunA17_Chr8g0353031 41.379 551 294 8 23 562 19 551 1.10e-132 399
Msa0463960 MtrunA17_Chr3g0142091 40.036 562 319 9 13 568 17 566 3.52e-131 395
Msa0463960 MtrunA17_Chr5g0399061 38.393 560 331 9 14 563 19 574 1.54e-128 389
Msa0463960 MtrunA17_Chr5g0422881 38.139 548 326 6 24 562 22 565 9.82e-128 387
Msa0463960 MtrunA17_Chr7g0261731 52.047 342 155 4 3 339 12 349 1.15e-125 374
Msa0463960 MtrunA17_Chr4g0056431 39.236 576 326 11 14 570 17 587 1.86e-124 379
Msa0463960 MtrunA17_Chr7g0255621 36.166 553 341 7 18 561 16 565 6.75e-120 367
Msa0463960 MtrunA17_Chr7g0214731 35.940 601 360 12 1 580 38 634 2.53e-119 367
Msa0463960 MtrunA17_Chr5g0415791 37.629 582 338 11 16 582 27 598 7.47e-119 365
Msa0463960 MtrunA17_Chr2g0284701 35.274 584 361 7 1 567 11 594 7.63e-119 365
Msa0463960 MtrunA17_Chr5g0399071 37.676 568 336 10 14 570 17 577 1.59e-118 363
Msa0463960 MtrunA17_Chr7g0217461 37.347 573 337 10 5 562 7 572 2.80e-118 363
Msa0463960 MtrunA17_Chr7g0255601 35.043 585 365 8 10 582 15 596 2.44e-117 361
Msa0463960 MtrunA17_Chr4g0054891 35.472 561 344 8 2 552 90 642 8.47e-117 361
Msa0463960 MtrunA17_Chr5g0400371 34.662 577 360 9 5 569 95 666 8.39e-116 359
Msa0463960 MtrunA17_Chr7g0255611 35.274 584 362 9 13 585 22 600 1.35e-115 356
Msa0463960 MtrunA17_Chr7g0218851 36.051 552 334 10 16 558 40 581 1.01e-113 352
Msa0463960 MtrunA17_Chr7g0214461 34.062 549 347 9 16 558 72 611 1.99e-113 352
Msa0463960 MtrunA17_Chr1g0213711 34.446 569 347 9 1 558 1 554 2.05e-113 350
Msa0463960 MtrunA17_Chr5g0439381 35.334 583 346 8 4 576 10 571 4.59e-111 344
Msa0463960 MtrunA17_Chr4g0014861 40.930 430 240 8 137 563 12 430 9.75e-111 338
Msa0463960 MtrunA17_Chr1g0193391 35.816 564 336 10 10 564 3 549 2.14e-110 343
Msa0463960 MtrunA17_Chr8g0379971 34.609 601 353 8 4 568 2 598 2.29e-108 337
Msa0463960 MtrunA17_Chr7g0271221 36.949 544 325 10 24 563 19 548 2.61e-108 337
Msa0463960 MtrunA17_Chr4g0059991 34.615 572 354 10 21 576 21 588 7.25e-108 336
Msa0463960 MtrunA17_Chr3g0133341 36.823 554 327 9 18 561 10 550 1.57e-105 329
Msa0463960 MtrunA17_Chr4g0059971 34.307 548 345 9 28 562 40 585 3.08e-103 324
Msa0463960 MtrunA17_Chr8g0390331 34.974 569 339 11 1 558 5 553 1.20e-102 322
Msa0463960 MtrunA17_Chr2g0276751 34.142 577 348 12 2 569 18 571 2.90e-102 321
Msa0463960 MtrunA17_Chr4g0063591 36.210 591 351 9 1 582 1 574 1.23e-101 319
Msa0463960 MtrunA17_Chr5g0415961 32.180 578 367 9 1 561 3 572 3.27e-101 318
Msa0463960 MtrunA17_Chr4g0011041 32.056 574 362 10 2 558 16 578 3.29e-101 318
Msa0463960 MtrunA17_Chr3g0082631 37.247 494 263 10 104 579 9 473 5.31e-101 314
Msa0463960 MtrunA17_Chr6g0451841 33.630 562 311 9 30 564 13 539 6.98e-101 316
Msa0463960 MtrunA17_Chr1g0147631 33.275 568 352 8 4 558 11 564 1.89e-99 314
Msa0463960 MtrunA17_Chr1g0157601 32.781 543 347 10 26 558 19 553 7.60e-99 311
Msa0463960 MtrunA17_Chr8g0362711 31.379 580 368 9 1 561 3 571 1.04e-97 309
Msa0463960 MtrunA17_Chr2g0331521 31.449 566 363 9 6 558 10 563 2.73e-95 303
Msa0463960 MtrunA17_Chr8g0379991 33.100 571 337 9 43 568 1 571 1.84e-93 298
Msa0463960 MtrunA17_Chr4g0011471 33.647 532 325 9 43 558 37 556 7.96e-93 296
Msa0463960 MtrunA17_Chr4g0059981 33.157 567 357 11 28 577 37 598 1.12e-92 296
Msa0463960 MtrunA17_Chr4g0069581 33.761 545 341 10 41 579 5 535 1.12e-92 295
Msa0463960 MtrunA17_Chr1g0157611 31.618 544 352 9 26 558 20 554 1.28e-87 282
Msa0463960 MtrunA17_Chr7g0240271 30.877 570 377 9 2 559 4 568 1.69e-87 283
Msa0463960 MtrunA17_Chr8g0362781 29.101 567 382 7 16 566 24 586 2.04e-87 282
Msa0463960 MtrunA17_Chr2g0331471 32.270 564 344 15 33 570 99 650 6.69e-87 284
Msa0463960 MtrunA17_Chr2g0331481 32.270 564 344 15 33 570 36 587 4.37e-86 280
Msa0463960 MtrunA17_Chr2g0331511 33.024 539 340 12 33 558 32 562 1.37e-85 279
Msa0463960 MtrunA17_Chr4g0060001 30.324 587 381 11 12 579 14 591 1.85e-85 278
Msa0463960 MtrunA17_Chr4g0003761 30.890 573 362 14 1 558 16 569 3.45e-85 277
Msa0463960 MtrunA17_Chr1g0157621 31.489 524 344 8 43 558 1 517 2.19e-82 268
Msa0463960 MtrunA17_Chr8g0362801 33.030 439 281 6 131 561 28 461 2.18e-79 258
Msa0463960 MtrunA17_Chr7g0240281 30.756 569 375 9 24 578 26 589 1.07e-76 254
Msa0463960 MtrunA17_Chr2g0331461 31.449 566 358 15 33 580 36 589 3.10e-75 251
Msa0463960 MtrunA17_Chr2g0325951 28.998 569 366 13 10 562 2 548 6.01e-73 243
Msa0463960 MtrunA17_Chr2g0326211 29.371 572 360 12 10 562 2 548 4.77e-71 238
Msa0463960 MtrunA17_Chr1g0177591 28.998 569 365 17 1 558 24 564 6.60e-71 238
Msa0463960 MtrunA17_Chr3g0142111 39.456 294 175 3 10 301 34 326 1.53e-68 225
Msa0463960 MtrunA17_Chr2g0325961 29.739 575 355 12 10 562 2 549 5.89e-68 230
Msa0463960 MtrunA17_Chr3g0112631 41.912 272 152 4 294 561 3 272 1.56e-66 218
Msa0463960 MtrunA17_Chr7g0261721 48.341 211 109 0 361 571 1 211 8.98e-64 209
Msa0463960 MtrunA17_Chr3g0142121 41.912 272 149 3 295 566 11 273 3.56e-62 207
Msa0463960 MtrunA17_Chr7g0235521 29.437 462 309 9 110 559 1 457 1.59e-60 208
Msa0463960 MtrunA17_Chr7g0240211 29.221 462 310 9 110 559 1 457 3.63e-59 204
Msa0463960 MtrunA17_Chr7g0240181 29.221 462 310 9 110 559 1 457 3.63e-59 204
Msa0463960 MtrunA17_Chr7g0240131 29.221 462 310 9 110 559 1 457 5.00e-59 204
Msa0463960 MtrunA17_Chr1g0177611 29.371 429 279 10 138 558 23 435 4.27e-58 201
Msa0463960 MtrunA17_Chr1g0177631 29.070 430 279 11 138 558 23 435 5.22e-56 195
Msa0463960 MtrunA17_Chr5g0415841 27.626 438 308 5 129 561 26 459 6.89e-55 193
Msa0463960 MtrunA17_Chr7g0240151 28.850 461 295 10 110 559 1 439 1.74e-54 191
Msa0463960 MtrunA17_Chr7g0234381 29.933 451 280 10 109 558 3 418 5.51e-53 186
Msa0463960 MtrunA17_Chr7g0234181 30.166 421 264 9 138 558 23 413 4.32e-52 184
Msa0463960 MtrunA17_Chr7g0234151 29.204 452 282 10 109 558 3 418 5.85e-50 178
Msa0463960 MtrunA17_Chr4g0060071 32.237 304 194 6 264 561 1 298 4.43e-49 172
Msa0463960 MtrunA17_Chr7g0261671 62.264 106 40 0 3 108 13 118 1.48e-43 151
Msa0463960 MtrunA17_Chr1g0166721 62.500 104 39 0 5 108 8 111 3.07e-43 151
Msa0463960 MtrunA17_Chr7g0261831 43.750 160 80 3 249 404 1 154 3.41e-36 134
Msa0463960 MtrunA17_Chr3g0112651 39.394 165 98 2 109 273 21 183 3.54e-35 132
Msa0463960 MtrunA17_Chr4g0014851 47.222 108 57 0 1 108 9 116 1.76e-29 114
Msa0463960 MtrunA17_Chr1g0147591 36.585 205 106 7 142 333 3 196 7.05e-29 114
Msa0463960 MtrunA17_Chr3g0112661 43.137 102 58 0 7 108 16 117 1.20e-24 99.8
Msa0463960 MtrunA17_Chr4g0060061 34.586 133 83 1 127 259 4 132 5.11e-22 92.0
Msa0463960 MtrunA17_Chr2g0326221 27.273 242 139 7 324 561 15 223 1.89e-19 87.4
Msa0463960 MtrunA17_Chr3g0082621 53.521 71 33 0 38 108 2 72 1.73e-17 77.8
Msa0463960 MtrunA17_Chr7g0240221 37.895 95 59 0 2 96 7 101 1.03e-16 76.6
Msa0463960 MtrunA17_Chr7g0240191 37.895 95 59 0 2 96 7 101 1.03e-16 76.6
Msa0463960 MtrunA17_Chr7g0240161 37.895 95 59 0 2 96 7 101 1.03e-16 76.6
Msa0463960 MtrunA17_Chr7g0240141 37.895 95 59 0 2 96 7 101 1.06e-16 76.6
Msa0463960 MtrunA17_Chr8g0362791 40.000 85 51 0 28 112 42 126 2.56e-16 76.3
Msa0463960 MtrunA17_Chr7g0235511 37.113 97 59 1 2 96 7 103 4.96e-15 72.0
Msa0463960 MtrunA17_Chr1g0147581 36.441 118 68 3 419 535 5 116 7.02e-15 71.2
Msa0463960 MtrunA17_Chr7g0261821 43.284 67 38 0 499 565 1 67 1.42e-13 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0463960 AT2G40460.1 71.843 586 156 3 1 584 1 579 0.0 857
Msa0463960 AT5G46050.1 49.228 583 280 7 2 576 5 579 0.0 548
Msa0463960 AT5G01180.2 45.694 569 301 6 1 564 1 566 0.0 535
Msa0463960 AT5G01180.3 45.694 569 301 6 1 564 1 566 0.0 535
Msa0463960 AT5G01180.1 45.694 569 301 6 1 564 1 566 0.0 535
Msa0463960 AT5G46040.1 49.573 585 277 11 2 578 5 579 0.0 531
Msa0463960 AT3G54140.1 44.737 570 309 4 1 566 1 568 1.72e-179 519
Msa0463960 AT3G54140.2 44.737 570 309 4 1 566 1 568 1.72e-179 519
Msa0463960 AT2G02040.1 43.085 564 314 5 7 565 24 585 4.33e-171 498
Msa0463960 AT1G62200.1 43.772 562 298 6 9 562 37 588 1.32e-167 490
Msa0463960 AT1G62200.2 41.723 592 298 7 8 562 36 617 7.14e-162 476
Msa0463960 AT1G62200.3 41.723 592 298 7 8 562 50 631 7.54e-162 476
Msa0463960 AT2G02020.1 40.497 563 295 7 2 562 20 544 2.10e-149 442
Msa0463960 AT3G53960.1 37.563 591 352 9 2 586 15 594 9.12e-146 434
Msa0463960 AT2G37900.1 39.184 564 326 7 2 561 16 566 3.76e-144 429
Msa0463960 AT2G02020.2 39.432 563 280 8 2 562 20 523 1.20e-140 418
Msa0463960 AT5G46050.2 47.579 475 233 7 110 576 1 467 4.69e-140 415
Msa0463960 AT3G54450.1 40.768 547 297 10 26 562 14 543 1.40e-139 417
Msa0463960 AT1G22540.1 39.535 559 313 7 12 565 18 556 1.57e-137 412
Msa0463960 AT1G72140.1 38.612 562 304 9 12 562 22 553 4.37e-135 405
Msa0463960 AT1G72120.1 41.208 563 308 8 4 562 10 553 5.90e-135 405
Msa0463960 AT1G72125.1 41.208 563 312 9 4 562 10 557 8.29e-135 405
Msa0463960 AT1G22570.1 40.000 565 317 7 5 562 12 561 7.44e-134 402
Msa0463960 AT1G68570.1 38.963 598 343 8 2 582 3 595 1.88e-132 400
Msa0463960 AT1G68570.2 40.214 562 316 7 38 582 7 565 3.13e-130 393
Msa0463960 AT1G22550.1 39.046 566 320 9 5 562 12 560 3.74e-130 393
Msa0463960 AT1G72130.1 38.787 544 298 7 25 565 26 537 8.78e-127 383
Msa0463960 AT2G37900.2 39.880 499 283 7 67 561 2 487 8.18e-126 379
Msa0463960 AT1G22570.2 39.626 535 302 6 35 562 4 524 4.06e-124 376
Msa0463960 AT2G26690.1 38.256 562 324 9 1 552 1 549 7.41e-115 354
Msa0463960 AT3G21670.1 36.767 563 322 8 14 563 19 560 8.96e-115 354
Msa0463960 AT1G32450.1 35.377 571 345 11 5 558 18 581 5.31e-113 350
Msa0463960 AT1G12110.1 35.862 580 351 10 2 569 5 575 7.01e-113 349
Msa0463960 AT1G69870.1 35.870 552 338 5 21 561 48 594 2.54e-112 348
Msa0463960 AT5G13400.1 36.126 573 348 10 13 570 52 621 5.87e-112 348
Msa0463960 AT4G21680.1 34.843 574 356 9 5 565 9 577 9.18e-111 343
Msa0463960 AT1G18880.1 34.829 557 343 9 28 569 23 574 1.84e-108 338
Msa0463960 AT1G59740.1 34.225 561 354 6 2 555 19 571 9.90e-106 331
Msa0463960 AT2G26690.2 37.951 527 304 9 36 552 3 516 7.27e-104 324
Msa0463960 AT5G14940.1 34.043 564 339 11 24 572 7 552 9.61e-104 324
Msa0463960 AT1G69850.1 31.491 597 365 10 1 566 1 584 4.09e-103 324
Msa0463960 AT1G33440.1 35.000 580 344 11 1 566 15 575 3.90e-102 322
Msa0463960 AT1G52190.1 33.333 579 343 13 2 558 9 566 4.21e-102 322
Msa0463960 AT2G26690.3 37.984 516 297 9 47 552 2 504 1.03e-100 316
Msa0463960 AT5G19640.1 33.272 547 327 11 25 558 60 581 3.63e-100 317
Msa0463960 AT1G72130.2 38.747 431 236 6 138 565 14 419 1.18e-99 309
Msa0463960 AT1G72130.3 38.747 431 236 6 138 565 14 419 1.18e-99 309
Msa0463960 AT1G27040.1 32.258 558 361 7 10 560 13 560 1.01e-96 306
Msa0463960 AT1G27040.2 32.258 558 361 7 10 560 9 556 1.08e-96 306
Msa0463960 AT3G47960.1 35.219 548 337 10 28 561 65 608 1.10e-95 306
Msa0463960 AT3G01350.1 32.399 571 339 13 26 569 9 559 1.08e-94 301
Msa0463960 AT5G62680.1 33.276 580 357 10 4 567 33 598 1.87e-94 302
Msa0463960 AT3G16180.1 34.438 543 330 13 33 558 32 565 4.49e-93 298
Msa0463960 AT1G27040.3 32.402 537 346 7 31 560 2 528 1.00e-92 295
Msa0463960 AT5G28470.2 32.136 557 342 14 21 558 14 553 1.33e-86 280
Msa0463960 AT3G25260.1 32.234 546 328 10 14 558 11 515 2.17e-86 278
Msa0463960 AT5G62730.1 29.711 589 352 9 2 563 34 587 4.17e-85 277
Msa0463960 AT3G45650.1 29.663 563 364 9 8 562 6 544 6.89e-85 275
Msa0463960 AT1G27080.1 32.550 553 346 10 24 564 14 551 8.32e-85 276
Msa0463960 AT5G28470.1 32.136 557 340 16 21 558 14 551 5.42e-84 273
Msa0463960 AT1G69860.1 32.601 546 348 9 28 566 22 554 1.42e-83 272
Msa0463960 AT3G45660.1 31.439 528 330 8 43 562 40 543 9.00e-83 270
Msa0463960 AT3G45660.3 31.439 528 330 8 43 562 40 543 9.00e-83 270
Msa0463960 AT3G45660.2 31.439 528 330 8 43 562 61 564 1.79e-82 270
Msa0463960 AT3G25280.1 30.700 557 346 10 5 558 2 521 1.26e-80 263
Msa0463960 AT5G62730.2 29.768 561 332 9 30 563 3 528 1.49e-80 263
Msa0463960 AT3G45650.2 28.353 589 364 10 8 562 6 570 3.87e-79 261
Msa0463960 AT3G45680.1 29.772 571 362 13 10 569 8 550 1.15e-76 254
Msa0463960 AT1G27080.2 31.927 545 341 11 55 584 3 532 6.69e-76 251
Msa0463960 AT3G45720.1 30.492 528 329 13 46 562 41 541 6.39e-71 238
Msa0463960 AT3G45710.1 28.295 569 367 13 8 562 4 545 2.95e-70 237
Msa0463960 AT3G45700.1 27.848 553 352 11 23 562 15 533 2.94e-69 234
Msa0463960 AT3G45690.1 29.926 538 310 16 23 553 17 494 3.80e-66 224
Msa0463960 AT2G38100.2 26.577 523 328 17 52 558 2 484 6.48e-39 150
Msa0463960 AT2G38100.1 26.577 523 328 17 52 558 18 500 1.40e-38 149
Msa0463960 AT2G38100.3 26.577 523 328 17 52 558 24 506 2.02e-38 149
Msa0463960 AT5G11570.1 33.077 260 158 7 303 558 229 476 8.49e-33 132
Msa0463960 AT5G11570.1 28.333 240 150 6 16 247 15 240 1.22e-26 114

Find 147 sgRNAs with CRISPR-Local

Find 311 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTCACTTAGATTACTATTA+TGG 0.130549 3_3:+63534658 Msa0463960:CDS
TTTCAATGCCATTGGATTAT+TGG 0.142348 3_3:+63534468 Msa0463960:CDS
AAATGGAACATTGTGTTATT+AGG 0.143035 3_3:+63531993 Msa0463960:CDS
TGTATATTTAATATCTTTAA+TGG 0.162276 3_3:+63530382 Msa0463960:exon
TCCTCATGAGAAAGAGTTAA+AGG 0.194574 3_3:+63531685 Msa0463960:CDS
TAAAGGCTTCTTTCTTTAAT+TGG 0.203778 3_3:+63531702 Msa0463960:CDS
TGCTGGTTTATTATTGTCTT+TGG 0.212439 3_3:+63531823 Msa0463960:CDS
ATAAAAGAGAATCACAATTT+TGG 0.218779 3_3:+63534373 Msa0463960:CDS
AGCCTTCCATTTCCCAGTTT+TGG 0.219265 3_3:-63530468 None:intergenic
GCACCAAAAGTTGAGATATT+TGG 0.221917 3_3:-63531641 None:intergenic
TTACCACAATATGTTCTTAT+TGG 0.230143 3_3:+63534433 Msa0463960:CDS
ATTCTTACCTGGGTCGCTTC+TGG 0.236583 3_3:+63530797 Msa0463960:CDS
GTGCCTTAATTGCAACTTTA+GGG 0.240529 3_3:+63531747 Msa0463960:CDS
AATGGAACATTGTGTTATTA+GGG 0.240985 3_3:+63531994 Msa0463960:CDS
TTGTCCCTATGAGTATATTT+TGG 0.246334 3_3:+63534407 Msa0463960:CDS
GTATATATTCAAGAGAATTT+AGG 0.251074 3_3:+63531773 Msa0463960:CDS
GGTGCCTTAATTGCAACTTT+AGG 0.256324 3_3:+63531746 Msa0463960:CDS
AAGCCCTAAAGTTGCAATTA+AGG 0.273762 3_3:-63531750 None:intergenic
CCAAGACTTTGCATGTCTTC+AGG 0.277774 3_3:-63534511 None:intergenic
CTAACTTTGTGTCGATAAAT+TGG 0.279561 3_3:-63531866 None:intergenic
CCTGCTGTTCCATCCAAAAC+TGG 0.284363 3_3:+63530455 Msa0463960:CDS
TCTACTTGATTTACTGTCAT+TGG 0.286034 3_3:-63534007 None:intergenic
ATCATGGGTATAGTCTTCTT+TGG 0.286104 3_3:-63530408 None:intergenic
CTCACTTAGATTACTATTAT+GGG 0.299840 3_3:+63534659 Msa0463960:CDS
AAACCAAATATCTCAACTTT+TGG 0.301836 3_3:+63531638 Msa0463960:CDS
TTAGGATGGGGACTTGGATA+TGG 0.322007 3_3:+63531791 Msa0463960:CDS
CACTGATTCCAAGCACCATT+TGG 0.336231 3_3:+63534074 Msa0463960:CDS
TTTGAAAGGATGGCCTTCTA+TGG 0.336648 3_3:+63530646 Msa0463960:CDS
TCAGTGTTACTAACCATATT+AGG 0.340683 3_3:-63534057 None:intergenic
AACAAGTTAATTAAGTAGAT+AGG 0.342754 3_3:+63534981 Msa0463960:three_prime_UTR
ATTGTGTTATTAGGGGAAAA+AGG 0.344611 3_3:+63532002 Msa0463960:CDS
TCCTTGGTATGCTCCTAATA+TGG 0.344882 3_3:+63534044 Msa0463960:CDS
GTTTGGATAACACCAATTCT+TGG 0.350998 3_3:+63530760 Msa0463960:CDS
CTCATCTCTCATTTATGTCT+TGG 0.355515 3_3:+63530831 Msa0463960:CDS
AGGACCAAGGTTTCTGTCTA+AGG 0.369834 3_3:-63534134 None:intergenic
ACTTTCTTCACAAGTGGAAT+TGG 0.371149 3_3:+63534538 Msa0463960:CDS
GAGGATTAAAATCATCAAAT+TGG 0.372384 3_3:-63531667 None:intergenic
CTTGTCAAGTGTTAATTTGT+TGG 0.372916 3_3:+63534693 Msa0463960:CDS
AGGAATGTTAATACATGGTC+AGG 0.381248 3_3:+63530733 Msa0463960:CDS
CTTCTTGAGGAACCAGTTGT+AGG 0.391292 3_3:-63533980 None:intergenic
AACAACCAAAATATACTCAT+AGG 0.391678 3_3:-63534412 None:intergenic
TTACTTCAAAGACTTGGAAT+AGG 0.391905 3_3:+63534286 Msa0463960:CDS
CAATTTATCGACACAAAGTT+AGG 0.392936 3_3:+63531867 Msa0463960:CDS
CTGCGCCGTGCAACGATTGT+AGG 0.392972 3_3:-63534855 None:intergenic
AAGATACTGTTTCATCAGTT+AGG 0.396676 3_3:+63530713 Msa0463960:CDS
AATGGAAGGTAATTCAACTT+TGG 0.407537 3_3:+63534789 Msa0463960:CDS
ATACATGGTCAGGGTCTGTT+TGG 0.412198 3_3:+63530743 Msa0463960:CDS
AGAAGCACTTTGTGTTCAAA+TGG 0.412642 3_3:+63534771 Msa0463960:CDS
TTCCATCCAAAACTGGGAAA+TGG 0.419022 3_3:+63530462 Msa0463960:CDS
GTTTGATGCAACTCCATAGA+AGG 0.419937 3_3:-63530659 None:intergenic
CTTCATGAAGTTGTGTTGTA+AGG 0.420306 3_3:-63530693 None:intergenic
ACAATGACTGATAAGATAAC+AGG 0.426895 3_3:+63534592 Msa0463960:CDS
CTATGGAGTTGCATCAAACT+TGG 0.433756 3_3:+63530663 Msa0463960:CDS
CTCATAGGGACAATATCTTT+AGG 0.436414 3_3:-63534397 None:intergenic
TCACAAGTGGAATTGGTGTT+GGG 0.437948 3_3:+63534545 Msa0463960:CDS
TTCACAAGTGGAATTGGTGT+TGG 0.438075 3_3:+63534544 Msa0463960:CDS
ATGACAGTAAATCAAGTAGA+AGG 0.439592 3_3:+63534010 Msa0463960:CDS
CCGTTCATGCGCCAGAAAAC+CGG 0.443452 3_3:+63534244 Msa0463960:CDS
GCACTTTACACAATGGCAAT+TGG 0.443556 3_3:+63531602 Msa0463960:CDS
ACTGATTCCAAGCACCATTT+GGG 0.443685 3_3:+63534075 Msa0463960:CDS
TCAACTTTGGATGCATCTCT+TGG 0.444482 3_3:+63534802 Msa0463960:CDS
CAAATTCCATTTGTGCATGT+TGG 0.447193 3_3:-63531539 None:intergenic
TGTAGATCTGAAGGGTTACT+AGG 0.449676 3_3:-63531962 None:intergenic
ACACTTGCTTACCTCAAAGT+TGG 0.452079 3_3:-63532040 None:intergenic
TGCGCCGTGCAACGATTGTA+GGG 0.452822 3_3:-63534854 None:intergenic
TCTATCACACTCCAACTTTG+AGG 0.456422 3_3:+63532029 Msa0463960:CDS
AGGCTTCTTTCTTTAATTGG+TGG 0.457739 3_3:+63531705 Msa0463960:CDS
TGTGATTCCTCTCGGGTGGC+CGG 0.458648 3_3:-63534263 None:intergenic
GAGAATTTAGGATGGGGACT+TGG 0.459132 3_3:+63531785 Msa0463960:CDS
TGAAGTAATGTGATTCCTCT+CGG 0.459981 3_3:-63534271 None:intergenic
GGATATGGTATTCCTACTGC+TGG 0.460012 3_3:+63531806 Msa0463960:CDS
CGTTGCACGGCGCAGTGCCA+TGG 0.461082 3_3:+63534863 Msa0463960:three_prime_UTR
GCAATGTAAGCACCAAGAAT+TGG 0.467213 3_3:-63530772 None:intergenic
GTTGCACGGCGCAGTGCCAT+GGG 0.469791 3_3:+63534864 Msa0463960:three_prime_UTR
ATTAAAGAAGATCCTACAAC+TGG 0.473810 3_3:+63533968 Msa0463960:CDS
CACTGAGAGCAGCATGGATA+GGG 0.474994 3_3:-63534197 None:intergenic
CAATTGCAATGGCTATGATC+TGG 0.475158 3_3:-63534318 None:intergenic
TTACATTGCAGATTCTTACC+TGG 0.476724 3_3:+63530786 Msa0463960:CDS
AGATCTACATGAGTTTCAAA+TGG 0.478491 3_3:+63531976 Msa0463960:CDS
TAAATTATGTGTGTAATCAA+TGG 0.480285 3_3:+63535051 Msa0463960:three_prime_UTR
CCTGAAGACATGCAAAGTCT+TGG 0.489343 3_3:+63534511 Msa0463960:CDS
TACACAATGGCAATTGGTGC+AGG 0.489428 3_3:+63531608 Msa0463960:CDS
TTGAAACCAACATGCACAAA+TGG 0.494777 3_3:+63531533 Msa0463960:CDS
TACATTGCAGATTCTTACCT+GGG 0.494969 3_3:+63530787 Msa0463960:CDS
GGAAATCAACAGTTCCATCA+TGG 0.497099 3_3:-63530424 None:intergenic
TGTCATTGGTGCTCTTCTTG+AGG 0.497730 3_3:-63533993 None:intergenic
TAATTTACAAACTATTACAC+AGG 0.502220 3_3:-63535035 None:intergenic
ATTTGTGCCCAAATGGTGCT+TGG 0.502978 3_3:-63534082 None:intergenic
ACAAGTTAATTAAGTAGATA+GGG 0.507033 3_3:+63534982 Msa0463960:three_prime_UTR
GTATAGTACATTGTTGAATG+AGG 0.507678 3_3:-63535203 None:intergenic
GAAGGAGCAAAGCTAATCCT+TGG 0.508830 3_3:+63534028 Msa0463960:CDS
TGAAACTCATGTAGATCTGA+AGG 0.512547 3_3:-63531971 None:intergenic
ATCACATTACTTCAAAGACT+TGG 0.515956 3_3:+63534280 Msa0463960:CDS
GAAGTAATGTGATTCCTCTC+GGG 0.522163 3_3:-63534270 None:intergenic
AAAATCCCAGCAGCATCTCT+AGG 0.522560 3_3:+63534163 Msa0463960:CDS
AGTGTTGATTTGTGCCCAAA+TGG 0.524157 3_3:-63534089 None:intergenic
AAGTAGATACATTTACAAGA+AGG 0.524961 3_3:+63534732 Msa0463960:CDS
GCCTTTAACTCTTTCTCATG+AGG 0.529898 3_3:-63531686 None:intergenic
GGAACAACTTTCTTCACAAG+TGG 0.532928 3_3:+63534532 Msa0463960:CDS
GCACTGAGAGCAGCATGGAT+AGG 0.533967 3_3:-63534198 None:intergenic
GCACTTTGTGTTCAAATGGA+AGG 0.535871 3_3:+63534775 Msa0463960:CDS
TCTAGAGAAAATTTCAAGCA+TGG 0.536628 3_3:+63534901 Msa0463960:three_prime_UTR
AAAGAAGACTATACCCATGA+TGG 0.538056 3_3:+63530410 Msa0463960:CDS
GAAGAGGGACTAGAAAGAGT+TGG 0.543314 3_3:+63534614 Msa0463960:CDS
GACATCTAAAAGTCCTGCTA+AGG 0.544118 3_3:+63531889 Msa0463960:CDS
ACACGAATTATATCCTTAGC+AGG 0.545832 3_3:-63531902 None:intergenic
ACTGATAAGATAACAGGAAG+AGG 0.551715 3_3:+63534598 Msa0463960:CDS
GAAATCAACAGTTCCATCAT+GGG 0.552746 3_3:-63530423 None:intergenic
AGCTGCCTAGAGATGCTGCT+GGG 0.554054 3_3:-63534168 None:intergenic
TATTCAAGAGAATTTAGGAT+GGG 0.557111 3_3:+63531778 Msa0463960:CDS
CTGCTGTTCCATCCAAAACT+GGG 0.558606 3_3:+63530456 Msa0463960:CDS
ACAACCAAAATATACTCATA+GGG 0.560334 3_3:-63534411 None:intergenic
CAGTTAGGAATGTTAATACA+TGG 0.561918 3_3:+63530728 Msa0463960:CDS
GTATGAAGCATTTGAAAGGA+TGG 0.563974 3_3:+63530636 Msa0463960:CDS
CAGGGTATGAAGCATTTGAA+AGG 0.571557 3_3:+63530632 Msa0463960:intron
AAGCTGCCTAGAGATGCTGC+TGG 0.575379 3_3:-63534169 None:intergenic
TCTTGGCTTACAAGTATGAG+AGG 0.577434 3_3:+63534819 Msa0463960:exon
TCTCAGTGCCAATGTATGAC+CGG 0.581455 3_3:+63534212 Msa0463960:CDS
TGAAAGTCCAGAAGCGACCC+AGG 0.586084 3_3:-63530804 None:intergenic
GATGGAACTGTTGATTTCCA+CGG 0.587530 3_3:+63530428 Msa0463960:CDS
ATGGAACAGCAGGTTTGCCG+TGG 0.589059 3_3:-63530445 None:intergenic
GACATAAATGAGAGATGAGA+GGG 0.589839 3_3:-63530827 None:intergenic
GACAATAATAAACCAGCAGT+AGG 0.594102 3_3:-63531818 None:intergenic
ACAATGGCAATTGGTGCAGG+TGG 0.594161 3_3:+63531611 Msa0463960:CDS
ATATTCAAGAGAATTTAGGA+TGG 0.594332 3_3:+63531777 Msa0463960:CDS
GAAGAATTCCAATAATCCAA+TGG 0.598605 3_3:-63534476 None:intergenic
GAAACTCATGTAGATCTGAA+GGG 0.608617 3_3:-63531970 None:intergenic
ATTCAAGAGAATTTAGGATG+GGG 0.609796 3_3:+63531779 Msa0463960:CDS
ACTACCTTAGACAGAAACCT+TGG 0.616776 3_3:+63534130 Msa0463960:CDS
ATCCAAAACTGGGAAATGGA+AGG 0.616857 3_3:+63530466 Msa0463960:CDS
CACAAATGGAATTTGCAACA+AGG 0.617097 3_3:+63531547 Msa0463960:CDS
GATAGATCTAACGGTCCCCA+TGG 0.620057 3_3:-63534880 None:intergenic
GTAATGTGATTCCTCTCGGG+TGG 0.620286 3_3:-63534267 None:intergenic
ATGGAACATTGTGTTATTAG+GGG 0.621546 3_3:+63531995 Msa0463960:CDS
CAGAAAACCGGCCACCCGAG+AGG 0.625344 3_3:+63534256 Msa0463960:CDS
CTGATAAGATAACAGGAAGA+GGG 0.626089 3_3:+63534599 Msa0463960:CDS
CTACACAGCACTTTACACAA+TGG 0.627388 3_3:+63531595 Msa0463960:CDS
TACTGCATAAGCAATTGCAA+TGG 0.627930 3_3:-63534329 None:intergenic
AGACATAAATGAGAGATGAG+AGG 0.629204 3_3:-63530828 None:intergenic
CATTGGCACTGAGAGCAGCA+TGG 0.639366 3_3:-63534203 None:intergenic
ATACCAATAAGAACATATTG+TGG 0.640019 3_3:-63534436 None:intergenic
GATCCCCTACAATCGTTGCA+CGG 0.668060 3_3:+63534850 Msa0463960:three_prime_UTR
AATTTACAAACTATTACACA+GGG 0.669465 3_3:-63535034 None:intergenic
GGAATGTTAATACATGGTCA+GGG 0.669674 3_3:+63530734 Msa0463960:CDS
GCGCCGTGCAACGATTGTAG+GGG 0.684389 3_3:-63534853 None:intergenic
TTGCACGGCGCAGTGCCATG+GGG 0.685830 3_3:+63534865 Msa0463960:three_prime_UTR
ACCATATTAGGAGCATACCA+AGG 0.712720 3_3:-63534045 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGTATATTTAATATCTTTAA+TGG + chr3_3:63530382-63530401 Msa0463960:exon 10.0%
!! AATTAATTGTTTATATTATG+GGG + chr3_3:63530561-63530580 Msa0463960:intron 10.0%
!! TTACTTATATATATTAATTC+AGG + chr3_3:63530613-63530632 Msa0463960:intron 10.0%
!! TACTTATATATATTAATTCA+GGG + chr3_3:63530614-63530633 Msa0463960:intron 10.0%
!! AAATTATGAATATTTCAAAA+AGG + chr3_3:63532173-63532192 Msa0463960:intron 10.0%
!! TTAATAAAAGAATAGTTATA+GGG - chr3_3:63533543-63533562 None:intergenic 10.0%
!! TTTAATAAAAGAATAGTTAT+AGG - chr3_3:63533544-63533563 None:intergenic 10.0%
!!! ATAAAAATATGTCAATTTTA+AGG - chr3_3:63533863-63533882 None:intergenic 10.0%
!!! TTTTTTTTTTTATTTGGATT+TGG - chr3_3:63534930-63534949 None:intergenic 10.0%
!! AAAGACAAAAATAAAGTATA+AGG - chr3_3:63530359-63530378 None:intergenic 15.0%
!! ATATATAAGTAAAAACCTAT+AGG - chr3_3:63530605-63530624 None:intergenic 15.0%
!!! ATTAGATTTGAGTTAATATT+AGG - chr3_3:63530864-63530883 None:intergenic 15.0%
!! TGAAGTTATAACTTTATAAT+CGG - chr3_3:63530890-63530909 None:intergenic 15.0%
!! ATTAATAATTCATGTTAACA+AGG - chr3_3:63530947-63530966 None:intergenic 15.0%
!!! TGATAAATAATGGTAAATTT+TGG + chr3_3:63532501-63532520 Msa0463960:intron 15.0%
!!! GATAAATAATGGTAAATTTT+GGG + chr3_3:63532502-63532521 Msa0463960:intron 15.0%
!! TTTATTTGCTTAATTAACAA+GGG + chr3_3:63532687-63532706 Msa0463960:intron 15.0%
!! TGTTATCTGAATATTAAATT+TGG + chr3_3:63532803-63532822 Msa0463960:intron 15.0%
!! GTTATCTGAATATTAAATTT+GGG + chr3_3:63532804-63532823 Msa0463960:intron 15.0%
!! TTATCTGAATATTAAATTTG+GGG + chr3_3:63532805-63532824 Msa0463960:intron 15.0%
!! GTTAAATCAAATGTAATAAT+CGG + chr3_3:63533096-63533115 Msa0463960:intron 15.0%
!! TTAAATCAAATGTAATAATC+GGG + chr3_3:63533097-63533116 Msa0463960:intron 15.0%
!!! TTTTATCATCAATATTTCTT+AGG + chr3_3:63533877-63533896 Msa0463960:intron 15.0%
!!! ATTGAATTTTCACAAAAAAT+TGG - chr3_3:63535096-63535115 None:intergenic 15.0%
!!! ATGCATGTTTTGTTAAATTT+TGG + chr3_3:63530519-63530538 Msa0463960:intron 20.0%
!! GTATATATTCAAGAGAATTT+AGG + chr3_3:63531773-63531792 Msa0463960:CDS 20.0%
!!! TCTTTGGTTATTTTCTATAT+TGG + chr3_3:63531839-63531858 Msa0463960:CDS 20.0%
!!! CTTTGGTTATTTTCTATATT+GGG + chr3_3:63531840-63531859 Msa0463960:CDS 20.0%
!! GTGAAAAAAAAAAAGACTTT+GGG - chr3_3:63532090-63532109 None:intergenic 20.0%
!! AGTGAAAAAAAAAAAGACTT+TGG - chr3_3:63532091-63532110 None:intergenic 20.0%
!! ATATTCATAATTTCATAGAC+CGG - chr3_3:63532166-63532185 None:intergenic 20.0%
!!! TTAAGAACTTGCTATTAATT+TGG - chr3_3:63532278-63532297 None:intergenic 20.0%
!!! CTTTATTTGCTTAATTAACA+AGG + chr3_3:63532686-63532705 Msa0463960:intron 20.0%
!!! CATTTAATTTTTCGATCTAA+AGG + chr3_3:63532763-63532782 Msa0463960:intron 20.0%
!! ATATTCAGATAACATATTTG+TGG - chr3_3:63532797-63532816 None:intergenic 20.0%
!!! ATAAGTGTACAATTTTATAC+AGG + chr3_3:63532841-63532860 Msa0463960:intron 20.0%
!!! ATAAAAGAGAATCACAATTT+TGG + chr3_3:63534373-63534392 Msa0463960:CDS 20.0%
!!! TTTCATACTTGTTATTTTTG+TGG - chr3_3:63534962-63534981 None:intergenic 20.0%
!! AACAAGTTAATTAAGTAGAT+AGG + chr3_3:63534981-63535000 Msa0463960:three_prime_UTR 20.0%
!! ACAAGTTAATTAAGTAGATA+GGG + chr3_3:63534982-63535001 Msa0463960:three_prime_UTR 20.0%
!! AATTTACAAACTATTACACA+GGG - chr3_3:63535037-63535056 None:intergenic 20.0%
!! TAATTTACAAACTATTACAC+AGG - chr3_3:63535038-63535057 None:intergenic 20.0%
!! TAAATTATGTGTGTAATCAA+TGG + chr3_3:63535051-63535070 Msa0463960:three_prime_UTR 20.0%
! TATATATAGCATGATCCTAT+AGG + chr3_3:63530587-63530606 Msa0463960:intron 25.0%
!! AAGCATAGCAATTTAAAACA+AGG - chr3_3:63531169-63531188 None:intergenic 25.0%
!!! CATTTTTTTCCATCAATTCA+AGG - chr3_3:63531328-63531347 None:intergenic 25.0%
!! ACTTTTATGAATGATCACTT+TGG + chr3_3:63531352-63531371 Msa0463960:intron 25.0%
!! AAACCAAATATCTCAACTTT+TGG + chr3_3:63531638-63531657 Msa0463960:CDS 25.0%
! GAGGATTAAAATCATCAAAT+TGG - chr3_3:63531670-63531689 None:intergenic 25.0%
! TAAAGGCTTCTTTCTTTAAT+TGG + chr3_3:63531702-63531721 Msa0463960:CDS 25.0%
! ATATTCAAGAGAATTTAGGA+TGG + chr3_3:63531777-63531796 Msa0463960:CDS 25.0%
!! TATTCAAGAGAATTTAGGAT+GGG + chr3_3:63531778-63531797 Msa0463960:CDS 25.0%
!! TTGAAGTTTTCTATTCTTGA+AGG - chr3_3:63531939-63531958 None:intergenic 25.0%
!! AAATGGAACATTGTGTTATT+AGG + chr3_3:63531993-63532012 Msa0463960:CDS 25.0%
!! AATGGAACATTGTGTTATTA+GGG + chr3_3:63531994-63532013 Msa0463960:CDS 25.0%
!!! TTTTTTTTTCACTTTGCATG+AGG + chr3_3:63532098-63532117 Msa0463960:intron 25.0%
! ATGAATATTTCAAAAAGGTC+TGG + chr3_3:63532178-63532197 Msa0463960:intron 25.0%
!!! TTTTTTCCGTGAATTTAAAC+AGG + chr3_3:63532446-63532465 Msa0463960:intron 25.0%
!!! AAATTTTGGGACCATAAAAT+TGG + chr3_3:63532515-63532534 Msa0463960:intron 25.0%
! ATGAATGTGAATATAGAAAG+TGG + chr3_3:63532581-63532600 Msa0463960:intron 25.0%
!!! AATAATCCTTAGTTTTTGTG+GGG - chr3_3:63532883-63532902 None:intergenic 25.0%
!!! CAATAATCCTTAGTTTTTGT+GGG - chr3_3:63532884-63532903 None:intergenic 25.0%
! ATTACTTGAGTTAAGATTTG+TGG - chr3_3:63533061-63533080 None:intergenic 25.0%
!!! TCTGAATTTTAGTTGAGTAT+TGG + chr3_3:63533421-63533440 Msa0463960:intron 25.0%
!!! GTTGAGTATTGGTATTTTAT+AGG + chr3_3:63533432-63533451 Msa0463960:intron 25.0%
!! ACTTGAGTTTAGTTTAGTAT+CGG - chr3_3:63533688-63533707 None:intergenic 25.0%
!! CTTAATTTGATAACCAATTC+AGG + chr3_3:63533927-63533946 Msa0463960:intron 25.0%
! ACAACCAAAATATACTCATA+GGG - chr3_3:63534414-63534433 None:intergenic 25.0%
! AACAACCAAAATATACTCAT+AGG - chr3_3:63534415-63534434 None:intergenic 25.0%
! TTACCACAATATGTTCTTAT+TGG + chr3_3:63534433-63534452 Msa0463960:CDS 25.0%
! ATACCAATAAGAACATATTG+TGG - chr3_3:63534439-63534458 None:intergenic 25.0%
!!! GAATTTCTTGAACAGTTTTT+TGG + chr3_3:63534567-63534586 Msa0463960:CDS 25.0%
! TCTCACTTAGATTACTATTA+TGG + chr3_3:63534658-63534677 Msa0463960:CDS 25.0%
! CTCACTTAGATTACTATTAT+GGG + chr3_3:63534659-63534678 Msa0463960:CDS 25.0%
!!! TTAATTTGTTGGTGTTTTTG+TGG + chr3_3:63534704-63534723 Msa0463960:CDS 25.0%
!!! TAATTTGTTGGTGTTTTTGT+GGG + chr3_3:63534705-63534724 Msa0463960:CDS 25.0%
! AAGTAGATACATTTACAAGA+AGG + chr3_3:63534732-63534751 Msa0463960:CDS 25.0%
!! TTTTCTCTAGATAGATCTAA+CGG - chr3_3:63534892-63534911 None:intergenic 25.0%
AAGATACTGTTTCATCAGTT+AGG + chr3_3:63530713-63530732 Msa0463960:CDS 30.0%
CAGTTAGGAATGTTAATACA+TGG + chr3_3:63530728-63530747 Msa0463960:CDS 30.0%
TAACTTCATAACCACTTGTT+TGG + chr3_3:63530902-63530921 Msa0463960:intron 30.0%
TTGGACCATAAGACAATTAA+AGG + chr3_3:63530921-63530940 Msa0463960:intron 30.0%
AAATTGCTATGCTTACCAAT+TGG + chr3_3:63531175-63531194 Msa0463960:intron 30.0%
GCTACATGTCATAAATAAGT+TGG - chr3_3:63531283-63531302 None:intergenic 30.0%
! TTTTTCCATCAATTCAAGGT+GGG - chr3_3:63531324-63531343 None:intergenic 30.0%
!!! TTTTTTCCATCAATTCAAGG+TGG - chr3_3:63531325-63531344 None:intergenic 30.0%
!! TGGATGTTTACCTCATTTTT+AGG + chr3_3:63531725-63531744 Msa0463960:CDS 30.0%
! AATTAAGGCACCTAAAAATG+AGG - chr3_3:63531738-63531757 None:intergenic 30.0%
! ATTCAAGAGAATTTAGGATG+GGG + chr3_3:63531779-63531798 Msa0463960:CDS 30.0%
!! TGCTGGTTTATTATTGTCTT+TGG + chr3_3:63531823-63531842 Msa0463960:CDS 30.0%
! CTAACTTTGTGTCGATAAAT+TGG - chr3_3:63531869-63531888 None:intergenic 30.0%
CAATTTATCGACACAAAGTT+AGG + chr3_3:63531867-63531886 Msa0463960:CDS 30.0%
AGATCTACATGAGTTTCAAA+TGG + chr3_3:63531976-63531995 Msa0463960:CDS 30.0%
! ATGGAACATTGTGTTATTAG+GGG + chr3_3:63531995-63532014 Msa0463960:CDS 30.0%
! ATTGTGTTATTAGGGGAAAA+AGG + chr3_3:63532002-63532021 Msa0463960:CDS 30.0%
TTTGTAAGACATTCTCAAAC+CGG + chr3_3:63532144-63532163 Msa0463960:intron 30.0%
TATCAGTCCTTCTCAAAATA+TGG + chr3_3:63532214-63532233 Msa0463960:intron 30.0%
ACTCTATTAAACTGTCAAGT+TGG - chr3_3:63532324-63532343 None:intergenic 30.0%
CATTGTGAAACATAGTGATT+TGG - chr3_3:63532426-63532445 None:intergenic 30.0%
! CTTTTCTCCATCCAATTTTA+TGG - chr3_3:63532529-63532548 None:intergenic 30.0%
CATAAAATTGGATGGAGAAA+AGG + chr3_3:63532527-63532546 Msa0463960:intron 30.0%
ATTTGCTTAATTAACAAGGG+TGG + chr3_3:63532690-63532709 Msa0463960:intron 30.0%
TTTGCTTAATTAACAAGGGT+GGG + chr3_3:63532691-63532710 Msa0463960:intron 30.0%
!! CCAATAATCCTTAGTTTTTG+TGG - chr3_3:63532885-63532904 None:intergenic 30.0%
CCACAAAAACTAAGGATTAT+TGG + chr3_3:63532882-63532901 Msa0463960:intron 30.0%
ATGATGTTTGAGCAGTAAAA+TGG - chr3_3:63532918-63532937 None:intergenic 30.0%
!!! ACATTTTTTTAGAGGTACTG+CGG - chr3_3:63532969-63532988 None:intergenic 30.0%
AAAGATAAGTGAATGAGTTG+AGG - chr3_3:63533130-63533149 None:intergenic 30.0%
CCATATATGGAAAAACAACT+AGG - chr3_3:63533261-63533280 None:intergenic 30.0%
!!! CCTAGTTGTTTTTCCATATA+TGG + chr3_3:63533258-63533277 Msa0463960:intron 30.0%
! TGTGACACATTTTCCATATA+TGG - chr3_3:63533274-63533293 None:intergenic 30.0%
ATAGTGAACAATCTTGTCTT+TGG - chr3_3:63533319-63533338 None:intergenic 30.0%
ATAGTTAAGAGTTTGTCTAG+TGG - chr3_3:63533401-63533420 None:intergenic 30.0%
TATCAAGCATATCCCATTTA+AGG + chr3_3:63533610-63533629 Msa0463960:intron 30.0%
AAAACAACCAAGCCTTAAAT+GGG - chr3_3:63533625-63533644 None:intergenic 30.0%
AAATCAAGTGCGTATCTATT+TGG + chr3_3:63533715-63533734 Msa0463960:intron 30.0%
!! TGATAACCAATTCAGGTTTT+TGG + chr3_3:63533934-63533953 Msa0463960:intron 30.0%
ATTAAAGAAGATCCTACAAC+TGG + chr3_3:63533968-63533987 Msa0463960:CDS 30.0%
TCTACTTGATTTACTGTCAT+TGG - chr3_3:63534010-63534029 None:intergenic 30.0%
ATGACAGTAAATCAAGTAGA+AGG + chr3_3:63534010-63534029 Msa0463960:CDS 30.0%
! TCAGTGTTACTAACCATATT+AGG - chr3_3:63534060-63534079 None:intergenic 30.0%
! AACACTCTTTTTGTGAAACA+AGG + chr3_3:63534106-63534125 Msa0463960:CDS 30.0%
ATCACATTACTTCAAAGACT+TGG + chr3_3:63534280-63534299 Msa0463960:CDS 30.0%
TTACTTCAAAGACTTGGAAT+AGG + chr3_3:63534286-63534305 Msa0463960:CDS 30.0%
! TTGTCCCTATGAGTATATTT+TGG + chr3_3:63534407-63534426 Msa0463960:CDS 30.0%
TTTCAATGCCATTGGATTAT+TGG + chr3_3:63534468-63534487 Msa0463960:CDS 30.0%
GAAGAATTCCAATAATCCAA+TGG - chr3_3:63534479-63534498 None:intergenic 30.0%
ACAATGACTGATAAGATAAC+AGG + chr3_3:63534592-63534611 Msa0463960:CDS 30.0%
!! CTTGTCAAGTGTTAATTTGT+TGG + chr3_3:63534693-63534712 Msa0463960:CDS 30.0%
AATGGAAGGTAATTCAACTT+TGG + chr3_3:63534789-63534808 Msa0463960:CDS 30.0%
TCTAGAGAAAATTTCAAGCA+TGG + chr3_3:63534901-63534920 Msa0463960:three_prime_UTR 30.0%
GTATAGTACATTGTTGAATG+AGG - chr3_3:63535206-63535225 None:intergenic 30.0%
ATCATGGGTATAGTCTTCTT+TGG - chr3_3:63530411-63530430 None:intergenic 35.0%
AAAGAAGACTATACCCATGA+TGG + chr3_3:63530410-63530429 Msa0463960:CDS 35.0%
GAAATCAACAGTTCCATCAT+GGG - chr3_3:63530426-63530445 None:intergenic 35.0%
! GTATGAAGCATTTGAAAGGA+TGG + chr3_3:63530636-63530655 Msa0463960:CDS 35.0%
CTTCATGAAGTTGTGTTGTA+AGG - chr3_3:63530696-63530715 None:intergenic 35.0%
AGGAATGTTAATACATGGTC+AGG + chr3_3:63530733-63530752 Msa0463960:CDS 35.0%
GGAATGTTAATACATGGTCA+GGG + chr3_3:63530734-63530753 Msa0463960:CDS 35.0%
GTTTGGATAACACCAATTCT+TGG + chr3_3:63530760-63530779 Msa0463960:CDS 35.0%
TTACATTGCAGATTCTTACC+TGG + chr3_3:63530786-63530805 Msa0463960:CDS 35.0%
TACATTGCAGATTCTTACCT+GGG + chr3_3:63530787-63530806 Msa0463960:CDS 35.0%
GACATAAATGAGAGATGAGA+GGG - chr3_3:63530830-63530849 None:intergenic 35.0%
AGACATAAATGAGAGATGAG+AGG - chr3_3:63530831-63530850 None:intergenic 35.0%
CTCATCTCTCATTTATGTCT+TGG + chr3_3:63530831-63530850 Msa0463960:CDS 35.0%
CAAGGCCTTTAATTGTCTTA+TGG - chr3_3:63530929-63530948 None:intergenic 35.0%
TTAACGCTGCTATGTTCTTA+AGG - chr3_3:63531001-63531020 None:intergenic 35.0%
CAAGACGAGTAAAACCATAA+TGG - chr3_3:63531048-63531067 None:intergenic 35.0%
!! CTTTGGTTACCTCATTTTTG+TGG + chr3_3:63531369-63531388 Msa0463960:intron 35.0%
TTGAAACCAACATGCACAAA+TGG + chr3_3:63531533-63531552 Msa0463960:CDS 35.0%
CAAATTCCATTTGTGCATGT+TGG - chr3_3:63531542-63531561 None:intergenic 35.0%
CACAAATGGAATTTGCAACA+AGG + chr3_3:63531547-63531566 Msa0463960:CDS 35.0%
GCACCAAAAGTTGAGATATT+TGG - chr3_3:63531644-63531663 None:intergenic 35.0%
TCCTCATGAGAAAGAGTTAA+AGG + chr3_3:63531685-63531704 Msa0463960:CDS 35.0%
AGGCTTCTTTCTTTAATTGG+TGG + chr3_3:63531705-63531724 Msa0463960:CDS 35.0%
GTGCCTTAATTGCAACTTTA+GGG + chr3_3:63531747-63531766 Msa0463960:CDS 35.0%
AAGCCCTAAAGTTGCAATTA+AGG - chr3_3:63531753-63531772 None:intergenic 35.0%
GACAATAATAAACCAGCAGT+AGG - chr3_3:63531821-63531840 None:intergenic 35.0%
ACACGAATTATATCCTTAGC+AGG - chr3_3:63531905-63531924 None:intergenic 35.0%
GAAACTCATGTAGATCTGAA+GGG - chr3_3:63531973-63531992 None:intergenic 35.0%
TGAAACTCATGTAGATCTGA+AGG - chr3_3:63531974-63531993 None:intergenic 35.0%
AGTCCTTCTCAAAATATGGT+AGG + chr3_3:63532218-63532237 Msa0463960:intron 35.0%
GTCCTTCTCAAAATATGGTA+GGG + chr3_3:63532219-63532238 Msa0463960:intron 35.0%
GGGACTAAATTGATAGAAGA+TGG + chr3_3:63532239-63532258 Msa0463960:intron 35.0%
TGAGTGCCTGTTTAAATTCA+CGG - chr3_3:63532455-63532474 None:intergenic 35.0%
TTTGTGGGGGTGATAAATAA+TGG + chr3_3:63532491-63532510 Msa0463960:intron 35.0%
! TTTGGGACCATAAAATTGGA+TGG + chr3_3:63532519-63532538 Msa0463960:intron 35.0%
TGGGCCAAGACATTAAAAAT+GGG - chr3_3:63532631-63532650 None:intergenic 35.0%
TTGCTTAATTAACAAGGGTG+GGG + chr3_3:63532692-63532711 Msa0463960:intron 35.0%
AAAATGCCCCACAAAAACTA+AGG + chr3_3:63532874-63532893 Msa0463960:intron 35.0%
!!! GTGGCTACACATTTTTTTAG+AGG - chr3_3:63532977-63532996 None:intergenic 35.0%
! CTTTTGGTAGATAGACGAAA+TGG - chr3_3:63533173-63533192 None:intergenic 35.0%
! AACTTGCATCGTTCTTCTTT+TGG - chr3_3:63533189-63533208 None:intergenic 35.0%
TAGTGACCAATCATTCAAGT+CGG - chr3_3:63533229-63533248 None:intergenic 35.0%
ATACACTTGGAATGCATATG+TGG - chr3_3:63533342-63533361 None:intergenic 35.0%
TATGCGTGTAACTATACACT+TGG - chr3_3:63533355-63533374 None:intergenic 35.0%
AAGTGTATAGTTACACGCAT+AGG + chr3_3:63533354-63533373 Msa0463960:intron 35.0%
TATAGTTACACGCATAGGAT+AGG + chr3_3:63533359-63533378 Msa0463960:intron 35.0%
CAAAACAACCAAGCCTTAAA+TGG - chr3_3:63533626-63533645 None:intergenic 35.0%
TATCGGATCGAGATATAACT+CGG - chr3_3:63533671-63533690 None:intergenic 35.0%
CTTTGTCCAAAAACCTGAAT+TGG - chr3_3:63533943-63533962 None:intergenic 35.0%
!!! GGATTTTAAAATCAGGACCA+AGG - chr3_3:63534150-63534169 None:intergenic 35.0%
TGAAGTAATGTGATTCCTCT+CGG - chr3_3:63534274-63534293 None:intergenic 35.0%
TACTGCATAAGCAATTGCAA+TGG - chr3_3:63534332-63534351 None:intergenic 35.0%
CTCATAGGGACAATATCTTT+AGG - chr3_3:63534400-63534419 None:intergenic 35.0%
ACTTTCTTCACAAGTGGAAT+TGG + chr3_3:63534538-63534557 Msa0463960:CDS 35.0%
ACTGATAAGATAACAGGAAG+AGG + chr3_3:63534598-63534617 Msa0463960:CDS 35.0%
CTGATAAGATAACAGGAAGA+GGG + chr3_3:63534599-63534618 Msa0463960:CDS 35.0%
!! AGAAGCACTTTGTGTTCAAA+TGG + chr3_3:63534771-63534790 Msa0463960:CDS 35.0%
GGAAATCAACAGTTCCATCA+TGG - chr3_3:63530427-63530446 None:intergenic 40.0%
!! GATGGAACTGTTGATTTCCA+CGG + chr3_3:63530428-63530447 Msa0463960:CDS 40.0%
TTCCATCCAAAACTGGGAAA+TGG + chr3_3:63530462-63530481 Msa0463960:CDS 40.0%
!!! TTCCATTTCCCAGTTTTGGA+TGG - chr3_3:63530467-63530486 None:intergenic 40.0%
ATCCAAAACTGGGAAATGGA+AGG + chr3_3:63530466-63530485 Msa0463960:CDS 40.0%
! AAGGCTTGTGCTTTTCTTGT+TGG + chr3_3:63530485-63530504 Msa0463960:CDS 40.0%
! CAGGGTATGAAGCATTTGAA+AGG + chr3_3:63530632-63530651 Msa0463960:intron 40.0%
TTTGAAAGGATGGCCTTCTA+TGG + chr3_3:63530646-63530665 Msa0463960:CDS 40.0%
GTTTGATGCAACTCCATAGA+AGG - chr3_3:63530662-63530681 None:intergenic 40.0%
CTATGGAGTTGCATCAAACT+TGG + chr3_3:63530663-63530682 Msa0463960:CDS 40.0%
GCAATGTAAGCACCAAGAAT+TGG - chr3_3:63530775-63530794 None:intergenic 40.0%
TGTCTTATGGTCCAAACAAG+TGG - chr3_3:63530916-63530935 None:intergenic 40.0%
GTAGAGTTTGCGTTCCATTA+TGG + chr3_3:63531031-63531050 Msa0463960:intron 40.0%
GTGGACAAATTAGCTCCAAT+TGG - chr3_3:63531193-63531212 None:intergenic 40.0%
TTTGTCCCACCTTGAATTGA+TGG + chr3_3:63531316-63531335 Msa0463960:intron 40.0%
ATCACTGTGCCACAAAAATG+AGG - chr3_3:63531381-63531400 None:intergenic 40.0%
TTAATTCCTCTACACGTCAC+AGG + chr3_3:63531472-63531491 Msa0463960:intron 40.0%
TAATTCCTCTACACGTCACA+GGG + chr3_3:63531473-63531492 Msa0463960:intron 40.0%
CTACACAGCACTTTACACAA+TGG + chr3_3:63531595-63531614 Msa0463960:CDS 40.0%
GCACTTTACACAATGGCAAT+TGG + chr3_3:63531602-63531621 Msa0463960:CDS 40.0%
GCCTTTAACTCTTTCTCATG+AGG - chr3_3:63531689-63531708 None:intergenic 40.0%
GGTGCCTTAATTGCAACTTT+AGG + chr3_3:63531746-63531765 Msa0463960:CDS 40.0%
GACATCTAAAAGTCCTGCTA+AGG + chr3_3:63531889-63531908 Msa0463960:CDS 40.0%
TGTAGATCTGAAGGGTTACT+AGG - chr3_3:63531965-63531984 None:intergenic 40.0%
TCTATCACACTCCAACTTTG+AGG + chr3_3:63532029-63532048 Msa0463960:CDS 40.0%
ACACTTGCTTACCTCAAAGT+TGG - chr3_3:63532043-63532062 None:intergenic 40.0%
!! GTCCCTACCATATTTTGAGA+AGG - chr3_3:63532224-63532243 None:intergenic 40.0%
TAAACAGGCACTCATTCTAG+TGG + chr3_3:63532461-63532480 Msa0463960:intron 40.0%
!! GTCCCCCATTTTTAATGTCT+TGG + chr3_3:63532624-63532643 Msa0463960:intron 40.0%
GGCCAAGACATTAAAAATGG+GGG - chr3_3:63532629-63532648 None:intergenic 40.0%
GGGCCAAGACATTAAAAATG+GGG - chr3_3:63532630-63532649 None:intergenic 40.0%
GTGGGCCAAGACATTAAAAA+TGG - chr3_3:63532632-63532651 None:intergenic 40.0%
!! TAAGTTAAGTTGACTGCCTG+TGG - chr3_3:63532654-63532673 None:intergenic 40.0%
GTGTGTATTCTCTACTTCAG+TGG - chr3_3:63532996-63533015 None:intergenic 40.0%
! CAAGTTGTTTCCTCCATATG+AGG + chr3_3:63533203-63533222 Msa0463960:intron 40.0%
CTTGTCTTTGGCATGCAAAA+TGG - chr3_3:63533307-63533326 None:intergenic 40.0%
! AGCATATCCCATTTAAGGCT+TGG + chr3_3:63533615-63533634 Msa0463960:intron 40.0%
TCCTTGGTATGCTCCTAATA+TGG + chr3_3:63534044-63534063 Msa0463960:CDS 40.0%
! ACCATATTAGGAGCATACCA+AGG - chr3_3:63534048-63534067 None:intergenic 40.0%
! ACTGATTCCAAGCACCATTT+GGG + chr3_3:63534075-63534094 Msa0463960:CDS 40.0%
!! AGTGTTGATTTGTGCCCAAA+TGG - chr3_3:63534092-63534111 None:intergenic 40.0%
ACTACCTTAGACAGAAACCT+TGG + chr3_3:63534130-63534149 Msa0463960:CDS 40.0%
!!! GCTGCTGGGATTTTAAAATC+AGG - chr3_3:63534157-63534176 None:intergenic 40.0%
ACGAAAAACCGGTCATACAT+TGG - chr3_3:63534223-63534242 None:intergenic 40.0%
GAAGTAATGTGATTCCTCTC+GGG - chr3_3:63534273-63534292 None:intergenic 40.0%
CAATTGCAATGGCTATGATC+TGG - chr3_3:63534321-63534340 None:intergenic 40.0%
! GCAGATGTTTTCAATGCCAT+TGG + chr3_3:63534460-63534479 Msa0463960:CDS 40.0%
GGAACAACTTTCTTCACAAG+TGG + chr3_3:63534532-63534551 Msa0463960:CDS 40.0%
TTCACAAGTGGAATTGGTGT+TGG + chr3_3:63534544-63534563 Msa0463960:CDS 40.0%
! TCACAAGTGGAATTGGTGTT+GGG + chr3_3:63534545-63534564 Msa0463960:CDS 40.0%
GCACTTTGTGTTCAAATGGA+AGG + chr3_3:63534775-63534794 Msa0463960:CDS 40.0%
TCAACTTTGGATGCATCTCT+TGG + chr3_3:63534802-63534821 Msa0463960:CDS 40.0%
TCTTGGCTTACAAGTATGAG+AGG + chr3_3:63534819-63534838 Msa0463960:exon 40.0%
CTGCTGTTCCATCCAAAACT+GGG + chr3_3:63530456-63530475 Msa0463960:CDS 45.0%
! AGCCTTCCATTTCCCAGTTT+TGG - chr3_3:63530471-63530490 None:intergenic 45.0%
ATACATGGTCAGGGTCTGTT+TGG + chr3_3:63530743-63530762 Msa0463960:CDS 45.0%
TTGTCCACAAATTGCACTCG+TGG + chr3_3:63531205-63531224 Msa0463960:intron 45.0%
TGTCCACAAATTGCACTCGT+GGG + chr3_3:63531206-63531225 Msa0463960:intron 45.0%
TATCCCACGAGTGCAATTTG+TGG - chr3_3:63531212-63531231 None:intergenic 45.0%
TACACAATGGCAATTGGTGC+AGG + chr3_3:63531608-63531627 Msa0463960:CDS 45.0%
! GAGAATTTAGGATGGGGACT+TGG + chr3_3:63531785-63531804 Msa0463960:CDS 45.0%
TTAGGATGGGGACTTGGATA+TGG + chr3_3:63531791-63531810 Msa0463960:CDS 45.0%
GGATATGGTATTCCTACTGC+TGG + chr3_3:63531806-63531825 Msa0463960:CDS 45.0%
!! TTCTAGTGGTAGTGGCTTTG+TGG + chr3_3:63532475-63532494 Msa0463960:intron 45.0%
!! TCTAGTGGTAGTGGCTTTGT+GGG + chr3_3:63532476-63532495 Msa0463960:intron 45.0%
GGACACGTAATCTTAGGACA+CGG - chr3_3:63532608-63532627 None:intergenic 45.0%
AATGGGGGACACGTAATCTT+AGG - chr3_3:63532614-63532633 None:intergenic 45.0%
!! TTAAGTTGACTGCCTGTGGT+GGG - chr3_3:63532650-63532669 None:intergenic 45.0%
! TTAACAAGGGTGGGGTATCA+AGG + chr3_3:63532700-63532719 Msa0463960:intron 45.0%
! TAACAAGGGTGGGGTATCAA+GGG + chr3_3:63532701-63532720 Msa0463960:intron 45.0%
TCATTCAAGTCGGCCTCATA+TGG - chr3_3:63533219-63533238 None:intergenic 45.0%
!! ATGAGGCCGACTTGAATGAT+TGG + chr3_3:63533220-63533239 Msa0463960:intron 45.0%
GTCTTTGGCATGCAAAATGG+TGG - chr3_3:63533304-63533323 None:intergenic 45.0%
CTTCTTGAGGAACCAGTTGT+AGG - chr3_3:63533983-63534002 None:intergenic 45.0%
! TGTCATTGGTGCTCTTCTTG+AGG - chr3_3:63533996-63534015 None:intergenic 45.0%
GAAGGAGCAAAGCTAATCCT+TGG + chr3_3:63534028-63534047 Msa0463960:CDS 45.0%
!! CACTGATTCCAAGCACCATT+TGG + chr3_3:63534074-63534093 Msa0463960:CDS 45.0%
ATTTGTGCCCAAATGGTGCT+TGG - chr3_3:63534085-63534104 None:intergenic 45.0%
AGGACCAAGGTTTCTGTCTA+AGG - chr3_3:63534137-63534156 None:intergenic 45.0%
AAAATCCCAGCAGCATCTCT+AGG + chr3_3:63534163-63534182 Msa0463960:CDS 45.0%
TCTCAGTGCCAATGTATGAC+CGG + chr3_3:63534212-63534231 Msa0463960:CDS 45.0%
GCATGAACGGTACGAAAAAC+CGG - chr3_3:63534234-63534253 None:intergenic 45.0%
CCAAGACTTTGCATGTCTTC+AGG - chr3_3:63534514-63534533 None:intergenic 45.0%
CCTGAAGACATGCAAAGTCT+TGG + chr3_3:63534511-63534530 Msa0463960:CDS 45.0%
GAAGAGGGACTAGAAAGAGT+TGG + chr3_3:63534614-63534633 Msa0463960:CDS 45.0%
!! TTAATTAATTGTTTATATTA+TGG + chr3_3:63530559-63530578 Msa0463960:intron 5.0%
!! TAATTAATTGTTTATATTAT+GGG + chr3_3:63530560-63530579 Msa0463960:intron 5.0%
!!! AAATCTTTTTTTTTTTTATT+TGG - chr3_3:63534936-63534955 None:intergenic 5.0%
!! AAATAAAAAAAAAAAAGATT+TGG + chr3_3:63534935-63534954 Msa0463960:three_prime_UTR 5.0%
!!! CCAGTTTTGGATGGAACAGC+AGG - chr3_3:63530458-63530477 None:intergenic 50.0%
CCTGCTGTTCCATCCAAAAC+TGG + chr3_3:63530455-63530474 Msa0463960:CDS 50.0%
ATTCTTACCTGGGTCGCTTC+TGG + chr3_3:63530797-63530816 Msa0463960:CDS 50.0%
TCATTCCCTGTGACGTGTAG+AGG - chr3_3:63531481-63531500 None:intergenic 50.0%
ACAATGGCAATTGGTGCAGG+TGG + chr3_3:63531611-63531630 Msa0463960:CDS 50.0%
GGCACTCATTCTAGTGGTAG+TGG + chr3_3:63532467-63532486 Msa0463960:intron 50.0%
!! CTAGTGGTAGTGGCTTTGTG+GGG + chr3_3:63532477-63532496 Msa0463960:intron 50.0%
!! TAGTGGTAGTGGCTTTGTGG+GGG + chr3_3:63532478-63532497 Msa0463960:intron 50.0%
TTAATGTCTTGGCCCACCAC+AGG + chr3_3:63532635-63532654 Msa0463960:intron 50.0%
!! GTTAAGTTGACTGCCTGTGG+TGG - chr3_3:63532651-63532670 None:intergenic 50.0%
TTCAAGTCGGCCTCATATGG+AGG - chr3_3:63533216-63533235 None:intergenic 50.0%
CACTGAGAGCAGCATGGATA+GGG - chr3_3:63534200-63534219 None:intergenic 50.0%
GTAATGTGATTCCTCTCGGG+TGG - chr3_3:63534270-63534289 None:intergenic 50.0%
GATCCCCTACAATCGTTGCA+CGG + chr3_3:63534850-63534869 Msa0463960:three_prime_UTR 50.0%
GATAGATCTAACGGTCCCCA+TGG - chr3_3:63534883-63534902 None:intergenic 50.0%
ATGGAACAGCAGGTTTGCCG+TGG - chr3_3:63530448-63530467 None:intergenic 55.0%
TGAAAGTCCAGAAGCGACCC+AGG - chr3_3:63530807-63530826 None:intergenic 55.0%
AGCTGCCTAGAGATGCTGCT+GGG - chr3_3:63534171-63534190 None:intergenic 55.0%
AAGCTGCCTAGAGATGCTGC+TGG - chr3_3:63534172-63534191 None:intergenic 55.0%
GCACTGAGAGCAGCATGGAT+AGG - chr3_3:63534201-63534220 None:intergenic 55.0%
! CATTGGCACTGAGAGCAGCA+TGG - chr3_3:63534206-63534225 None:intergenic 55.0%
!! CCGGTTTTCTGGCGCATGAA+CGG - chr3_3:63534247-63534266 None:intergenic 55.0%
CCGTTCATGCGCCAGAAAAC+CGG + chr3_3:63534244-63534263 Msa0463960:CDS 55.0%
TGCGCCGTGCAACGATTGTA+GGG - chr3_3:63534857-63534876 None:intergenic 55.0%
! AGGGTGGGGTATCAAGGGTG+TGG + chr3_3:63532706-63532725 Msa0463960:intron 60.0%
TGTGATTCCTCTCGGGTGGC+CGG - chr3_3:63534266-63534285 None:intergenic 60.0%
GCGCCGTGCAACGATTGTAG+GGG - chr3_3:63534856-63534875 None:intergenic 60.0%
CTGCGCCGTGCAACGATTGT+AGG - chr3_3:63534858-63534877 None:intergenic 60.0%
!! CTCTCGGGTGGCCGGTTTTC+TGG - chr3_3:63534258-63534277 None:intergenic 65.0%
CAGAAAACCGGCCACCCGAG+AGG + chr3_3:63534256-63534275 Msa0463960:CDS 65.0%
GTTGCACGGCGCAGTGCCAT+GGG + chr3_3:63534864-63534883 Msa0463960:three_prime_UTR 65.0%
TTGCACGGCGCAGTGCCATG+GGG + chr3_3:63534865-63534884 Msa0463960:three_prime_UTR 65.0%
CGTTGCACGGCGCAGTGCCA+TGG + chr3_3:63534863-63534882 Msa0463960:three_prime_UTR 70.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 63530329 63535234 63530329 ID=Msa0463960;Name=Msa0463960
chr3_3 mRNA 63530329 63535234 63530329 ID=Msa0463960-mRNA-1;Parent=Msa0463960;Name=Msa0463960-mRNA-1;_AED=0.13;_eAED=0.13;_QI=72|1|1|1|1|1|4|397|589
chr3_3 exon 63530329 63530506 63530329 ID=Msa0463960-mRNA-1:exon:13834;Parent=Msa0463960-mRNA-1
chr3_3 exon 63530635 63530852 63530635 ID=Msa0463960-mRNA-1:exon:13835;Parent=Msa0463960-mRNA-1
chr3_3 exon 63531494 63532050 63531494 ID=Msa0463960-mRNA-1:exon:13836;Parent=Msa0463960-mRNA-1
chr3_3 exon 63533949 63535234 63533949 ID=Msa0463960-mRNA-1:exon:13837;Parent=Msa0463960-mRNA-1
chr3_3 five_prime_UTR 63530329 63530400 63530329 ID=Msa0463960-mRNA-1:five_prime_utr;Parent=Msa0463960-mRNA-1
chr3_3 CDS 63530401 63530506 63530401 ID=Msa0463960-mRNA-1:cds;Parent=Msa0463960-mRNA-1
chr3_3 CDS 63530635 63530852 63530635 ID=Msa0463960-mRNA-1:cds;Parent=Msa0463960-mRNA-1
chr3_3 CDS 63531494 63532050 63531494 ID=Msa0463960-mRNA-1:cds;Parent=Msa0463960-mRNA-1
chr3_3 CDS 63533949 63534837 63533949 ID=Msa0463960-mRNA-1:cds;Parent=Msa0463960-mRNA-1
chr3_3 three_prime_UTR 63534838 63535234 63534838 ID=Msa0463960-mRNA-1:three_prime_utr;Parent=Msa0463960-mRNA-1
Gene Sequence

>Msa0463960

ATGGAAGCCAAAGAAGACTATACCCATGATGGAACTGTTGATTTCCACGGCAAACCTGCTGTTCCATCCAAAACTGGGAAATGGAAGGCTTGTGCTTTTCTTGTTGGGTATGAAGCATTTGAAAGGATGGCCTTCTATGGAGTTGCATCAAACTTGGTGAATTACCTTACAACACAACTTCATGAAGATACTGTTTCATCAGTTAGGAATGTTAATACATGGTCAGGGTCTGTTTGGATAACACCAATTCTTGGTGCTTACATTGCAGATTCTTACCTGGGTCGCTTCTGGACTTTCACCCTCTCATCTCTCATTTATGTCTTGGGAATGACACTTCTTACTATAGCTGTATCACTCAAGAGCTTGAAACCAACATGCACAAATGGAATTTGCAACAAGGCTTCAACATCACAAATTACATTTTTCTACACAGCACTTTACACAATGGCAATTGGTGCAGGTGGAACAAAACCAAATATCTCAACTTTTGGTGCTGACCAATTTGATGATTTTAATCCTCATGAGAAAGAGTTAAAGGCTTCTTTCTTTAATTGGTGGATGTTTACCTCATTTTTAGGTGCCTTAATTGCAACTTTAGGGCTTGTATATATTCAAGAGAATTTAGGATGGGGACTTGGATATGGTATTCCTACTGCTGGTTTATTATTGTCTTTGGTTATTTTCTATATTGGGACACCAATTTATCGACACAAAGTTAGGACATCTAAAAGTCCTGCTAAGGATATAATTCGTGTCTTTATTGTTGCCTTCAAGAATAGAAAACTTCAACTTCCTAGTAACCCTTCAGATCTACATGAGTTTCAAATGGAACATTGTGTTATTAGGGGAAAAAGGCAAGTCTATCACACTCCAACTTTGAGGTTTTTGGACAAAGCTGCTATTAAAGAAGATCCTACAACTGGTTCCTCAAGAAGAGCACCAATGACAGTAAATCAAGTAGAAGGAGCAAAGCTAATCCTTGGTATGCTCCTAATATGGTTAGTAACACTGATTCCAAGCACCATTTGGGCACAAATCAACACTCTTTTTGTGAAACAAGGCACTACCTTAGACAGAAACCTTGGTCCTGATTTTAAAATCCCAGCAGCATCTCTAGGCAGCTTTGTAACCCTATCCATGCTGCTCTCAGTGCCAATGTATGACCGGTTTTTCGTACCGTTCATGCGCCAGAAAACCGGCCACCCGAGAGGAATCACATTACTTCAAAGACTTGGAATAGGATTTTCAATCCAGATCATAGCCATTGCAATTGCTTATGCAGTAGAAGTTAGAAGAATGCATGTGATAAAAGAGAATCACAATTTTGGTCCTAAAGATATTGTCCCTATGAGTATATTTTGGTTGTTACCACAATATGTTCTTATTGGTATAGCAGATGTTTTCAATGCCATTGGATTATTGGAATTCTTCTATGATCAATCTCCTGAAGACATGCAAAGTCTTGGAACAACTTTCTTCACAAGTGGAATTGGTGTTGGGAATTTCTTGAACAGTTTTTTGGTAACAATGACTGATAAGATAACAGGAAGAGGGACTAGAAAGAGTTGGATTGCTGATAACTTGAATGATTCTCACTTAGATTACTATTATGGGTTTCTTTTGATCTTGTCAAGTGTTAATTTGTTGGTGTTTTTGTGGGTTTCAAGTAGATACATTTACAAGAAGGAGTCAACAAGAATCAAAGAAGCACTTTGTGTTCAAATGGAAGGTAATTCAACTTTGGATGCATCTCTTGGCTTACAAGTATGA

Protein sequence

>Msa0463960

MEAKEDYTHDGTVDFHGKPAVPSKTGKWKACAFLVGYEAFERMAFYGVASNLVNYLTTQLHEDTVSSVRNVNTWSGSVWITPILGAYIADSYLGRFWTFTLSSLIYVLGMTLLTIAVSLKSLKPTCTNGICNKASTSQITFFYTALYTMAIGAGGTKPNISTFGADQFDDFNPHEKELKASFFNWWMFTSFLGALIATLGLVYIQENLGWGLGYGIPTAGLLLSLVIFYIGTPIYRHKVRTSKSPAKDIIRVFIVAFKNRKLQLPSNPSDLHEFQMEHCVIRGKRQVYHTPTLRFLDKAAIKEDPTTGSSRRAPMTVNQVEGAKLILGMLLIWLVTLIPSTIWAQINTLFVKQGTTLDRNLGPDFKIPAASLGSFVTLSMLLSVPMYDRFFVPFMRQKTGHPRGITLLQRLGIGFSIQIIAIAIAYAVEVRRMHVIKENHNFGPKDIVPMSIFWLLPQYVLIGIADVFNAIGLLEFFYDQSPEDMQSLGTTFFTSGIGVGNFLNSFLVTMTDKITGRGTRKSWIADNLNDSHLDYYYGFLLILSSVNLLVFLWVSSRYIYKKESTRIKEALCVQMEGNSTLDASLGLQV*