Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0696620 | XP_003608332.1 | 97.468 | 316 | 8 | 0 | 39 | 354 | 1 | 316 | 0.0 | 636 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0696620 | sp|O81884|GALDH_ARATH | 77.987 | 318 | 70 | 0 | 37 | 354 | 2 | 319 | 0.0 | 523 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0696620 | G7JTZ5 | 97.468 | 316 | 8 | 0 | 39 | 354 | 1 | 316 | 0.0 | 636 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001950 | Msa0696620 | 0.805565 | 1.255448e-49 | -8.615850e-47 |
| Msa0004360 | Msa0696620 | 0.805797 | 1.122532e-49 | -8.615850e-47 |
| Msa0005050 | Msa0696620 | 0.826773 | 2.256768e-54 | -8.615850e-47 |
| Msa0016670 | Msa0696620 | 0.829704 | 4.434399e-55 | -8.615850e-47 |
| Msa0027260 | Msa0696620 | 0.804735 | 1.872903e-49 | -8.615850e-47 |
| Msa0032840 | Msa0696620 | -0.845460 | 4.006809e-59 | -8.615850e-47 |
| Msa0046750 | Msa0696620 | 0.821369 | 4.189018e-53 | -8.615850e-47 |
| Msa0050580 | Msa0696620 | 0.811025 | 8.605791e-51 | -8.615850e-47 |
| Msa0053110 | Msa0696620 | 0.838729 | 2.418683e-57 | -8.615850e-47 |
| Msa0064350 | Msa0696620 | 0.809884 | 1.517651e-50 | -8.615850e-47 |
| Msa0072810 | Msa0696620 | 0.811879 | 5.614009e-51 | -8.615850e-47 |
| Msa0073670 | Msa0696620 | 0.826369 | 2.816997e-54 | -8.615850e-47 |
| Msa0082280 | Msa0696620 | 0.837507 | 4.989340e-57 | -8.615850e-47 |
| Msa0084650 | Msa0696620 | 0.821662 | 3.583438e-53 | -8.615850e-47 |
| Msa0090590 | Msa0696620 | 0.809878 | 1.522201e-50 | -8.615850e-47 |
| Msa0103000 | Msa0696620 | 0.811355 | 7.296824e-51 | -8.615850e-47 |
| Msa0110970 | Msa0696620 | 0.812942 | 3.287936e-51 | -8.615850e-47 |
| Msa0113160 | Msa0696620 | 0.803956 | 2.721065e-49 | -8.615850e-47 |
| Msa0114540 | Msa0696620 | -0.803021 | 4.252595e-49 | -8.615850e-47 |
| Msa0120330 | Msa0696620 | 0.818017 | 2.440904e-52 | -8.615850e-47 |
| Msa0618040 | Msa0696620 | 0.800210 | 1.603956e-48 | -8.615850e-47 |
| Msa0620810 | Msa0696620 | 0.800833 | 1.197204e-48 | -8.615850e-47 |
| Msa0620990 | Msa0696620 | 0.802530 | 5.371027e-49 | -8.615850e-47 |
| Msa0622960 | Msa0696620 | 0.829773 | 4.267123e-55 | -8.615850e-47 |
| Msa0623700 | Msa0696620 | 0.810605 | 1.060577e-50 | -8.615850e-47 |
| Msa0642650 | Msa0696620 | 0.816828 | 4.520764e-52 | -8.615850e-47 |
| Msa0644860 | Msa0696620 | 0.813638 | 2.312837e-51 | -8.615850e-47 |
| Msa0647380 | Msa0696620 | 0.801277 | 9.713160e-49 | -8.615850e-47 |
| Msa0650090 | Msa0696620 | 0.802912 | 4.479323e-49 | -8.615850e-47 |
| Msa0654540 | Msa0696620 | 0.913275 | 7.431169e-84 | -8.615850e-47 |
| Msa0669850 | Msa0696620 | 0.807480 | 4.952127e-50 | -8.615850e-47 |
| Msa0677290 | Msa0696620 | 0.805525 | 1.280129e-49 | -8.615850e-47 |
| Msa0680240 | Msa0696620 | 0.823330 | 1.468236e-53 | -8.615850e-47 |
| Msa0682780 | Msa0696620 | 0.808947 | 2.411023e-50 | -8.615850e-47 |
| Msa0687630 | Msa0696620 | 0.827226 | 1.758180e-54 | -8.615850e-47 |
| Msa0690250 | Msa0696620 | 0.810723 | 1.000209e-50 | -8.615850e-47 |
| Msa0692080 | Msa0696620 | 0.815520 | 8.864846e-52 | -8.615850e-47 |
| Msa0696620 | Msa0709760 | 0.801889 | 7.277465e-49 | -8.615850e-47 |
| Msa0696620 | Msa0713820 | 0.801967 | 7.013539e-49 | -8.615850e-47 |
| Msa0696620 | Msa0747780 | 0.832014 | 1.203368e-55 | -8.615850e-47 |
| Msa0696620 | Msa0755340 | 0.831533 | 1.581498e-55 | -8.615850e-47 |
| Msa0696620 | Msa0776220 | 0.812368 | 4.392504e-51 | -8.615850e-47 |
| Msa0696620 | Msa0797120 | 0.843383 | 1.449505e-58 | -8.615850e-47 |
| Msa0696620 | Msa0798000 | -0.827404 | 1.594074e-54 | -8.615850e-47 |
| Msa0696620 | Msa0813720 | 0.808356 | 3.223900e-50 | -8.615850e-47 |
| Msa0696620 | Msa0825020 | 0.812183 | 4.818184e-51 | -8.615850e-47 |
| Msa0696620 | Msa0825310 | 0.801225 | 9.954927e-49 | -8.615850e-47 |
| Msa0696620 | Msa0836660 | -0.801678 | 8.038162e-49 | -8.615850e-47 |
| Msa0696620 | Msa0846030 | 0.819282 | 1.260474e-52 | -8.615850e-47 |
| Msa0696620 | Msa0872310 | 0.833876 | 4.145563e-56 | -8.615850e-47 |
| Msa0696620 | Msa0880440 | 0.811116 | 8.224414e-51 | -8.615850e-47 |
| Msa0696620 | Msa0890250 | 0.805426 | 1.342526e-49 | -8.615850e-47 |
| Msa0696620 | Msa0905550 | 0.829170 | 5.979020e-55 | -8.615850e-47 |
| Msa0696620 | Msa0925440 | 0.819145 | 1.354691e-52 | -8.615850e-47 |
| Msa0696620 | Msa0936340 | 0.816105 | 6.564635e-52 | -8.615850e-47 |
| Msa0696620 | Msa0937550 | 0.831837 | 1.330641e-55 | -8.615850e-47 |
| Msa0696620 | Msa0946320 | 0.810506 | 1.114588e-50 | -8.615850e-47 |
| Msa0696620 | Msa1012700 | 0.820030 | 8.506616e-53 | -8.615850e-47 |
| Msa0696620 | Msa1012810 | 0.803347 | 3.641069e-49 | -8.615850e-47 |
| Msa0696620 | Msa1018790 | 0.821869 | 3.209213e-53 | -8.615850e-47 |
| Msa0696620 | Msa1040830 | 0.819673 | 1.026246e-52 | -8.615850e-47 |
| Msa0696620 | Msa1041530 | 0.812363 | 4.402309e-51 | -8.615850e-47 |
| Msa0696620 | Msa1044340 | 0.807427 | 5.082406e-50 | -8.615850e-47 |
| Msa0696620 | Msa1049510 | -0.824022 | 1.010671e-53 | -8.615850e-47 |
| Msa0696620 | Msa1082700 | 0.841130 | 5.727750e-58 | -8.615850e-47 |
| Msa0696620 | Msa1087810 | 0.807351 | 5.272696e-50 | -8.615850e-47 |
| Msa0696620 | Msa1126510 | 0.846644 | 1.908634e-59 | -8.615850e-47 |
| Msa0696620 | Msa1126770 | 0.839351 | 1.669273e-57 | -8.615850e-47 |
| Msa0696620 | Msa1127140 | 0.801972 | 6.997560e-49 | -8.615850e-47 |
| Msa0696620 | Msa1127890 | 0.816121 | 6.510886e-52 | -8.615850e-47 |
| Msa0696620 | Msa1134110 | 0.878809 | 2.079545e-69 | -8.615850e-47 |
| Msa0696620 | Msa1139810 | 0.801751 | 7.766620e-49 | -8.615850e-47 |
| Msa0696620 | Msa1159100 | 0.807203 | 5.670052e-50 | -8.615850e-47 |
| Msa0696620 | Msa1165870 | 0.818876 | 1.558901e-52 | -8.615850e-47 |
| Msa0696620 | Msa1166010 | 0.805801 | 1.120345e-49 | -8.615850e-47 |
| Msa0696620 | Msa1166860 | 0.846967 | 1.556689e-59 | -8.615850e-47 |
| Msa0696620 | Msa1188940 | 0.802558 | 5.300242e-49 | -8.615850e-47 |
| Msa0696620 | Msa1210810 | 0.800677 | 1.288216e-48 | -8.615850e-47 |
| Msa0696620 | Msa1223840 | 0.801130 | 1.040952e-48 | -8.615850e-47 |
| Msa0696620 | Msa1224670 | 0.814921 | 1.204095e-51 | -8.615850e-47 |
| Msa0696620 | Msa1226620 | 0.837930 | 3.886051e-57 | -8.615850e-47 |
| Msa0696620 | Msa1237030 | 0.805451 | 1.326330e-49 | -8.615850e-47 |
| Msa0696620 | Msa1249870 | 0.851969 | 6.277655e-61 | -8.615850e-47 |
| Msa0696620 | Msa1269580 | -0.805605 | 1.231238e-49 | -8.615850e-47 |
| Msa0696620 | Msa1272330 | 0.804529 | 2.068264e-49 | -8.615850e-47 |
| Msa0696620 | Msa1283170 | 0.811388 | 7.179670e-51 | -8.615850e-47 |
| Msa0696620 | Msa1284520 | 0.811019 | 8.631768e-51 | -8.615850e-47 |
| Msa0696620 | Msa1292830 | 0.801236 | 9.902269e-49 | -8.615850e-47 |
| Msa0696620 | Msa1307950 | 0.814775 | 1.297170e-51 | -8.615850e-47 |
| Msa0696620 | Msa1321630 | 0.851848 | 6.790472e-61 | -8.615850e-47 |
| Msa0696620 | Msa1324000 | 0.832020 | 1.199454e-55 | -8.615850e-47 |
| Msa0696620 | Msa1335940 | 0.803500 | 3.385067e-49 | -8.615850e-47 |
| Msa0696620 | Msa1351760 | 0.802739 | 4.862159e-49 | -8.615850e-47 |
| Msa0696620 | Msa1358550 | 0.808488 | 3.021976e-50 | -8.615850e-47 |
| Msa0696620 | Msa1365150 | 0.811365 | 7.260200e-51 | -8.615850e-47 |
| Msa0696620 | Msa1367880 | 0.811165 | 8.023501e-51 | -8.615850e-47 |
| Msa0696620 | Msa1370860 | 0.833650 | 4.722145e-56 | -8.615850e-47 |
| Msa0696620 | Msa1374440 | 0.800131 | 1.664217e-48 | -8.615850e-47 |
| Msa0696620 | Msa1379570 | 0.803476 | 3.423989e-49 | -8.615850e-47 |
| Msa0696620 | Msa1379990 | 0.800999 | 1.107464e-48 | -8.615850e-47 |
| Msa0696620 | Msa1382310 | 0.832271 | 1.039989e-55 | -8.615850e-47 |
| Msa0696620 | Msa1382720 | 0.810189 | 1.304742e-50 | -8.615850e-47 |
| Msa0696620 | Msa1390310 | 0.809947 | 1.471018e-50 | -8.615850e-47 |
| Msa0696620 | Msa1392200 | 0.817684 | 2.903065e-52 | -8.615850e-47 |
| Msa0696620 | Msa1396000 | 0.840150 | 1.034177e-57 | -8.615850e-47 |
| Msa0696620 | Msa1397810 | 0.811177 | 7.975517e-51 | -8.615850e-47 |
| Msa0696620 | Msa1398480 | 0.806202 | 9.222409e-50 | -8.615850e-47 |
| Msa0696620 | Msa1404190 | 0.839094 | 1.945655e-57 | -8.615850e-47 |
| Msa0696620 | Msa1422270 | 0.800388 | 1.475192e-48 | -8.615850e-47 |
| Msa0696620 | Msa1429360 | -0.810631 | 1.047365e-50 | -8.615850e-47 |
| Msa0696620 | Msa1442850 | 0.812681 | 3.752083e-51 | -8.615850e-47 |
| Msa0696620 | Msa1444450 | 0.801918 | 7.178431e-49 | -8.615850e-47 |
| Msa0696620 | Msa1449880 | 0.808698 | 2.725476e-50 | -8.615850e-47 |
| Msa0696620 | Msa1450280 | 0.800255 | 1.570190e-48 | -8.615850e-47 |
| Msa0696620 | Msa1465080 | 0.801040 | 1.086227e-48 | -8.615850e-47 |
| Msa0696620 | Msa1466990 | 0.810020 | 1.418435e-50 | -8.615850e-47 |
| Msa0141830 | Msa0696620 | 0.808947 | 2.411325e-50 | -8.615850e-47 |
| Msa0143080 | Msa0696620 | 0.831831 | 1.335349e-55 | -8.615850e-47 |
| Msa0143430 | Msa0696620 | 0.836647 | 8.277475e-57 | -8.615850e-47 |
| Msa0147560 | Msa0696620 | 0.809590 | 1.755141e-50 | -8.615850e-47 |
| Msa0169570 | Msa0696620 | 0.804187 | 2.436873e-49 | -8.615850e-47 |
| Msa0172960 | Msa0696620 | -0.822170 | 2.734025e-53 | -8.615850e-47 |
| Msa0173740 | Msa0696620 | 0.802415 | 5.671155e-49 | -8.615850e-47 |
| Msa0173820 | Msa0696620 | 0.806666 | 7.364202e-50 | -8.615850e-47 |
| Msa0174770 | Msa0696620 | 0.821119 | 4.782045e-53 | -8.615850e-47 |
| Msa0183830 | Msa0696620 | 0.808949 | 2.408032e-50 | -8.615850e-47 |
| Msa0194970 | Msa0696620 | 0.814836 | 1.257762e-51 | -8.615850e-47 |
| Msa0199690 | Msa0696620 | 0.809034 | 2.309215e-50 | -8.615850e-47 |
| Msa0199880 | Msa0696620 | 0.806715 | 7.188939e-50 | -8.615850e-47 |
| Msa0207000 | Msa0696620 | 0.800870 | 1.176682e-48 | -8.615850e-47 |
| Msa0230550 | Msa0696620 | -0.840628 | 7.753092e-58 | -8.615850e-47 |
| Msa0235980 | Msa0696620 | 0.802913 | 4.475831e-49 | -8.615850e-47 |
| Msa0236980 | Msa0696620 | 0.829409 | 5.230771e-55 | -8.615850e-47 |
| Msa0369050 | Msa0696620 | 0.806518 | 7.910644e-50 | -8.615850e-47 |
| Msa0378340 | Msa0696620 | 0.803221 | 3.865709e-49 | -8.615850e-47 |
| Msa0402330 | Msa0696620 | 0.826428 | 2.727786e-54 | -8.615850e-47 |
| Msa0413720 | Msa0696620 | 0.806342 | 8.617723e-50 | -8.615850e-47 |
| Msa0422830 | Msa0696620 | 0.800930 | 1.143961e-48 | -8.615850e-47 |
| Msa0422910 | Msa0696620 | 0.807456 | 5.011208e-50 | -8.615850e-47 |
| Msa0425940 | Msa0696620 | 0.870069 | 1.926959e-66 | -8.615850e-47 |
| Msa0426020 | Msa0696620 | 0.851531 | 8.350781e-61 | -8.615850e-47 |
| Msa0426160 | Msa0696620 | 0.864810 | 9.301446e-65 | -8.615850e-47 |
| Msa0427690 | Msa0696620 | 0.800188 | 1.620070e-48 | -8.615850e-47 |
| Msa0436280 | Msa0696620 | -0.812898 | 3.363255e-51 | -8.615850e-47 |
| Msa0441130 | Msa0696620 | 0.812030 | 5.204618e-51 | -8.615850e-47 |
| Msa0464630 | Msa0696620 | 0.811583 | 6.511834e-51 | -8.615850e-47 |
| Msa0470610 | Msa0696620 | 0.808673 | 2.759100e-50 | -8.615850e-47 |
| Msa0481480 | Msa0696620 | 0.807416 | 5.108110e-50 | -8.615850e-47 |
| Msa0241780 | Msa0696620 | 0.830011 | 3.733451e-55 | -8.615850e-47 |
| Msa0241800 | Msa0696620 | 0.802490 | 5.474349e-49 | -8.615850e-47 |
| Msa0242230 | Msa0696620 | 0.810890 | 9.206323e-51 | -8.615850e-47 |
| Msa0259560 | Msa0696620 | 0.804235 | 2.381027e-49 | -8.615850e-47 |
| Msa0260240 | Msa0696620 | 0.801704 | 7.943074e-49 | -8.615850e-47 |
| Msa0260280 | Msa0696620 | 0.801346 | 9.403862e-49 | -8.615850e-47 |
| Msa0264570 | Msa0696620 | 0.841215 | 5.438419e-58 | -8.615850e-47 |
| Msa0267220 | Msa0696620 | 0.804108 | 2.530163e-49 | -8.615850e-47 |
| Msa0304260 | Msa0696620 | 0.812294 | 4.557181e-51 | -8.615850e-47 |
| Msa0304300 | Msa0696620 | 0.805876 | 1.080120e-49 | -8.615850e-47 |
| Msa0328210 | Msa0696620 | 0.817064 | 4.002211e-52 | -8.615850e-47 |
| Msa0351500 | Msa0696620 | 0.800296 | 1.540319e-48 | -8.615850e-47 |
| Msa0355270 | Msa0696620 | 0.819002 | 1.459544e-52 | -8.615850e-47 |
| Msa0484690 | Msa0696620 | 0.802691 | 4.974230e-49 | -8.615850e-47 |
| Msa0505370 | Msa0696620 | 0.805691 | 1.181313e-49 | -8.615850e-47 |
| Msa0508590 | Msa0696620 | 0.807734 | 4.374065e-50 | -8.615850e-47 |
| Msa0508630 | Msa0696620 | 0.820680 | 6.036007e-53 | -8.615850e-47 |
| Msa0510440 | Msa0696620 | 0.804194 | 2.428534e-49 | -8.615850e-47 |
| Msa0518520 | Msa0696620 | 0.800138 | 1.658748e-48 | -8.615850e-47 |
| Msa0527550 | Msa0696620 | 0.804701 | 1.903531e-49 | -8.615850e-47 |
| Msa0527590 | Msa0696620 | 0.809010 | 2.337726e-50 | -8.615850e-47 |
| Msa0527600 | Msa0696620 | 0.802835 | 4.646934e-49 | -8.615850e-47 |
| Msa0552810 | Msa0696620 | 0.821827 | 3.282873e-53 | -8.615850e-47 |
| Msa0560470 | Msa0696620 | 0.803537 | 3.324589e-49 | -8.615850e-47 |
| Msa0581070 | Msa0696620 | 0.800745 | 1.247929e-48 | -8.615850e-47 |
| Msa0591060 | Msa0696620 | 0.801759 | 7.735898e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0696620 | MtrunA17_Chr4g0049341 | 97.468 | 316 | 8 | 0 | 39 | 354 | 1 | 316 | 0.0 | 636 |
| Msa0696620 | MtrunA17_Chr7g0274061 | 28.667 | 300 | 179 | 8 | 44 | 318 | 16 | 305 | 2.90e-23 | 99.0 |
| Msa0696620 | MtrunA17_Chr7g0274041 | 29.889 | 271 | 148 | 9 | 43 | 297 | 11 | 255 | 1.78e-22 | 96.7 |
| Msa0696620 | MtrunA17_Chr1g0169691 | 26.948 | 308 | 187 | 11 | 39 | 318 | 1 | 298 | 5.04e-22 | 95.1 |
| Msa0696620 | MtrunA17_Chr7g0274071 | 27.986 | 293 | 184 | 9 | 44 | 318 | 18 | 301 | 2.48e-21 | 93.6 |
| Msa0696620 | MtrunA17_Chr1g0204651 | 27.969 | 261 | 165 | 8 | 43 | 296 | 9 | 253 | 2.15e-19 | 87.8 |
| Msa0696620 | MtrunA17_Chr7g0221791 | 31.019 | 216 | 134 | 7 | 43 | 253 | 8 | 213 | 1.02e-16 | 80.1 |
| Msa0696620 | MtrunA17_Chr7g0222171 | 30.556 | 216 | 136 | 7 | 43 | 253 | 8 | 214 | 1.02e-16 | 80.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0696620 | AT4G33670.1 | 77.987 | 318 | 70 | 0 | 37 | 354 | 2 | 319 | 0.0 | 523 |
| Msa0696620 | AT1G04690.1 | 25.974 | 308 | 190 | 10 | 39 | 318 | 1 | 298 | 6.17e-21 | 92.4 |
| Msa0696620 | AT1G60750.1 | 28.475 | 295 | 186 | 8 | 34 | 318 | 3 | 282 | 6.67e-20 | 89.7 |
| Msa0696620 | AT1G60730.1 | 32.273 | 220 | 134 | 7 | 43 | 257 | 11 | 220 | 2.76e-18 | 85.1 |
| Msa0696620 | AT1G60680.2 | 31.222 | 221 | 136 | 6 | 43 | 257 | 11 | 221 | 8.67e-18 | 82.0 |
| Msa0696620 | AT5G53580.1 | 27.852 | 298 | 178 | 14 | 49 | 318 | 45 | 333 | 1.08e-17 | 83.6 |
| Msa0696620 | AT1G60680.1 | 31.222 | 221 | 136 | 6 | 43 | 257 | 11 | 221 | 1.26e-17 | 83.2 |
| Msa0696620 | AT1G60690.1 | 27.812 | 320 | 196 | 11 | 43 | 341 | 11 | 316 | 3.37e-17 | 82.0 |
| Msa0696620 | AT1G60710.1 | 30.455 | 220 | 138 | 7 | 43 | 257 | 11 | 220 | 2.19e-16 | 79.7 |
| Msa0696620 | AT1G60730.3 | 29.958 | 237 | 137 | 8 | 43 | 257 | 11 | 240 | 3.52e-15 | 76.3 |
Find 96 sgRNAs with CRISPR-Local
Find 196 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCCTGCTTCCTTCAGTTTC+TGG | 0.033628 | 4_4:-66575292 | None:intergenic |
| CAGTGTCATGATATTGAATT+TGG | 0.090600 | 4_4:+66575099 | Msa0696620:CDS |
| CTCGAAATTTGAAGATATTA+TGG | 0.250466 | 4_4:+66574892 | Msa0696620:intron |
| GCAAGAGAACTTGCAGCTTC+TGG | 0.255338 | 4_4:+66577658 | Msa0696620:CDS |
| TATTTACTTATGTTCTTGAT+AGG | 0.294080 | 4_4:+66575354 | Msa0696620:CDS |
| GCAGTACAGCTTGTTAAATA+AGG | 0.324806 | 4_4:+66576479 | Msa0696620:CDS |
| GACTCGTTTCATTGGGATTA+CGG | 0.334830 | 4_4:+66575316 | Msa0696620:CDS |
| GCTCATCTCCTCCAGCTACT+TGG | 0.339426 | 4_4:+66577800 | Msa0696620:three_prime_UTR |
| TGGGATTACGGGACTTCCTT+TGG | 0.348113 | 4_4:+66575328 | Msa0696620:CDS |
| GGTGAAGCAGGATGCCATTC+AGG | 0.355943 | 4_4:-66575533 | None:intergenic |
| ACTCGTTTCATTGGGATTAC+GGG | 0.365687 | 4_4:+66575317 | Msa0696620:CDS |
| TCTCCTCTCGGCAACGTCTT+CGG | 0.372642 | 4_4:+66574723 | Msa0696620:CDS |
| TCCTGCTTCACCGGAACTTA+AGG | 0.379403 | 4_4:+66575544 | Msa0696620:CDS |
| AAACTAAGCTCCGTCGGGTT+CGG | 0.379564 | 4_4:+66574696 | Msa0696620:CDS |
| GCAGGGAAGACTCGTTTCAT+TGG | 0.381344 | 4_4:+66575308 | Msa0696620:CDS |
| TCCTTCAGTTTCTGGAGTGC+AGG | 0.386056 | 4_4:-66575284 | None:intergenic |
| CAGTGCTTCTCCGTTGGCGA+TGG | 0.387532 | 4_4:+66575487 | Msa0696620:CDS |
| CACAAGTGTAGACGAGAGTT+TGG | 0.388926 | 4_4:+66575044 | Msa0696620:CDS |
| TTACGTGAACTTGGAAGAAC+TGG | 0.400346 | 4_4:+66574669 | Msa0696620:CDS |
| CTTCTACTGCTGTTGTAACT+TGG | 0.401378 | 4_4:+66577926 | Msa0696620:three_prime_UTR |
| CAGGGAAGACTCGTTTCATT+GGG | 0.402120 | 4_4:+66575309 | Msa0696620:CDS |
| GCTACAATGTATTCACTTCT+CGG | 0.402496 | 4_4:-66574967 | None:intergenic |
| CTCTGTCAATGATTCGACTT+TGG | 0.415789 | 4_4:+66575421 | Msa0696620:CDS |
| ATTGACAGAGTGATGGCAAT+AGG | 0.422905 | 4_4:-66575408 | None:intergenic |
| CAGCAAGGGGTCAACTCTGC+TGG | 0.427552 | 4_4:-66577756 | None:intergenic |
| ATTCAAAACATCATAGCAAT+GGG | 0.435122 | 4_4:-66577855 | None:intergenic |
| CTCATCTCCTCCAGCTACTT+GGG | 0.435597 | 4_4:+66577801 | Msa0696620:three_prime_UTR |
| ACCTTAAGTTCCGGTGAAGC+AGG | 0.436418 | 4_4:-66575545 | None:intergenic |
| TACTCTTGCTCCCAAGTAGC+TGG | 0.438654 | 4_4:-66577811 | None:intergenic |
| ATGGGTCTTCTCACTGAGGC+TGG | 0.452747 | 4_4:+66575506 | Msa0696620:CDS |
| GTTTGCTTGTTCTTCTGAAA+CGG | 0.454532 | 4_4:-66574748 | None:intergenic |
| CTGAGGCTGGCCCTCCTGAA+TGG | 0.457972 | 4_4:+66575519 | Msa0696620:CDS |
| AACACCCTTGGACTTCAGAT+AGG | 0.459632 | 4_4:-66575456 | None:intergenic |
| CTCCAGAAACTGAAGGAAGC+AGG | 0.467577 | 4_4:+66575290 | Msa0696620:CDS |
| AAAATGGAGTTACGTGAACT+TGG | 0.470953 | 4_4:+66574660 | Msa0696620:CDS |
| ATAAGATTTGAGATACTGTA+TGG | 0.472110 | 4_4:+66578062 | Msa0696620:three_prime_UTR |
| GACCCCTTGCTGCCTGCACA+TGG | 0.477686 | 4_4:+66577767 | Msa0696620:exon |
| TGAATTTGGATCGTTAGATC+AGG | 0.479668 | 4_4:+66575113 | Msa0696620:CDS |
| TATTCAAAACATCATAGCAA+TGG | 0.481511 | 4_4:-66577856 | None:intergenic |
| TAGGGTTCCGCCTGGAACAT+TGG | 0.482789 | 4_4:+66575373 | Msa0696620:CDS |
| ATTTACTTATGTTCTTGATA+GGG | 0.486238 | 4_4:+66575355 | Msa0696620:CDS |
| TGGCATGAGATCTGTCGAAC+AGG | 0.491310 | 4_4:+66576521 | Msa0696620:CDS |
| TGTCAATGATTCGACTTTGG+AGG | 0.493678 | 4_4:+66575424 | Msa0696620:CDS |
| CATTATCAGTGCTTCTCCGT+TGG | 0.494180 | 4_4:+66575481 | Msa0696620:CDS |
| AGTATCACATCCAATGTTCC+AGG | 0.498225 | 4_4:-66575383 | None:intergenic |
| TGAATGGCATCCTGCTTCAC+CGG | 0.501096 | 4_4:+66575535 | Msa0696620:CDS |
| GAAATCACATCAGTTCTTGT+TGG | 0.502174 | 4_4:+66576501 | Msa0696620:CDS |
| GATTACGGGACTTCCTTTGG+AGG | 0.507961 | 4_4:+66575331 | Msa0696620:CDS |
| ACACCATGTGCAGGCAGCAA+GGG | 0.509430 | 4_4:-66577770 | None:intergenic |
| GGGTTCGGAGCTTCTCCTCT+CGG | 0.519474 | 4_4:+66574711 | Msa0696620:CDS |
| AGTGCTTCTCCGTTGGCGAT+GGG | 0.519640 | 4_4:+66575488 | Msa0696620:CDS |
| TAAGACAAGACCTTAAGTTC+CGG | 0.528236 | 4_4:-66575554 | None:intergenic |
| AACACCATGTGCAGGCAGCA+AGG | 0.531462 | 4_4:-66577771 | None:intergenic |
| GACTTAAACTAAGCTCCGTC+GGG | 0.541712 | 4_4:+66574691 | Msa0696620:CDS |
| ACTGATAATGCCAACACCCT+TGG | 0.547863 | 4_4:-66575468 | None:intergenic |
| TTCTAAATTATACAAACAGA+TGG | 0.550380 | 4_4:-66577900 | None:intergenic |
| GTTCTTGATAGGGTTCCGCC+TGG | 0.552103 | 4_4:+66575365 | Msa0696620:CDS |
| GGACTTAAACTAAGCTCCGT+CGG | 0.552405 | 4_4:+66574690 | Msa0696620:CDS |
| CAAACTCTCGTCTACACTTG+TGG | 0.552478 | 4_4:-66575043 | None:intergenic |
| AAAACATCATAGCAATGGGA+TGG | 0.556593 | 4_4:-66577851 | None:intergenic |
| CAACTCTGCTGGATTCCGCT+AGG | 0.566406 | 4_4:-66577745 | None:intergenic |
| TATCTGAAGTCCAAGGGTGT+TGG | 0.578204 | 4_4:+66575458 | Msa0696620:CDS |
| ACACCCTTGGACTTCAGATA+GGG | 0.582023 | 4_4:-66575455 | None:intergenic |
| AAACATCATAGCAATGGGAT+GGG | 0.593757 | 4_4:-66577850 | None:intergenic |
| TACATTGTAGCAACTAAGTG+TGG | 0.594346 | 4_4:+66574979 | Msa0696620:CDS |
| TCCAGAAACTGAAGGAAGCA+GGG | 0.594834 | 4_4:+66575291 | Msa0696620:CDS |
| GTCTGAGAAAGTGCTCGGAA+AGG | 0.603040 | 4_4:+66574924 | Msa0696620:CDS |
| AGTGCCCTATCTGAAGTCCA+AGG | 0.603565 | 4_4:+66575451 | Msa0696620:CDS |
| GAAGCAGGATGCCATTCAGG+AGG | 0.605422 | 4_4:-66575530 | None:intergenic |
| ACATAAGTAAATACCTCCAA+AGG | 0.605576 | 4_4:-66575344 | None:intergenic |
| AGTGTCGAAGAAGTTGATGC+CGG | 0.606690 | 4_4:-66574796 | None:intergenic |
| AGGAGAAGCTCCGAACCCGA+CGG | 0.607761 | 4_4:-66574706 | None:intergenic |
| AGCAGTACGAAAAGTACGAA+TGG | 0.611089 | 4_4:+66574554 | Msa0696620:CDS |
| ACACTGTCTGAGAAAGTGCT+CGG | 0.611937 | 4_4:+66574919 | Msa0696620:CDS |
| GTGCCCTATCTGAAGTCCAA+GGG | 0.616458 | 4_4:+66575452 | Msa0696620:CDS |
| TTGTAGCAACTAAGTGTGGA+AGG | 0.618298 | 4_4:+66574983 | Msa0696620:CDS |
| TCGAATCATTGACAGAGTGA+TGG | 0.619506 | 4_4:-66575415 | None:intergenic |
| GTGAGAAGACCCATCGCCAA+CGG | 0.621669 | 4_4:-66575497 | None:intergenic |
| ATATAAAAGAAATCTGAGGC+CGG | 0.627728 | 4_4:-66578129 | None:intergenic |
| GAAATTTGAAGATATTATGG+AGG | 0.631142 | 4_4:+66574895 | Msa0696620:intron |
| TCCTGCACTCCAGAAACTGA+AGG | 0.632500 | 4_4:+66575283 | Msa0696620:CDS |
| GAAGCGGCTCTGTCAGAAGT+CGG | 0.634736 | 4_4:+66577688 | Msa0696620:CDS |
| AGAAGCTGCAAGTTCTCTTG+CGG | 0.638741 | 4_4:-66577656 | None:intergenic |
| TAAGATTTGAGATACTGTAT+GGG | 0.640567 | 4_4:+66578063 | Msa0696620:three_prime_UTR |
| CACCATGTGCAGGCAGCAAG+GGG | 0.654902 | 4_4:-66577769 | None:intergenic |
| AAGTGTGGAAGGTACAAAGA+GGG | 0.661768 | 4_4:+66574994 | Msa0696620:CDS |
| TAAGTGTGGAAGGTACAAAG+AGG | 0.663345 | 4_4:+66574993 | Msa0696620:CDS |
| TCTTGCTCCCAAGTAGCTGG+AGG | 0.669791 | 4_4:-66577808 | None:intergenic |
| AAGCAGGATGCCATTCAGGA+GGG | 0.673956 | 4_4:-66575529 | None:intergenic |
| GTGTAGACGAGAGTTTGGAA+AGG | 0.684238 | 4_4:+66575049 | Msa0696620:CDS |
| GATACTGTATGGGACACTGT+AGG | 0.690470 | 4_4:+66578073 | Msa0696620:three_prime_UTR |
| AGCTTCTGGAATCGACGAAG+CGG | 0.691488 | 4_4:+66577672 | Msa0696620:CDS |
| GGCGATGGGTCTTCTCACTG+AGG | 0.694882 | 4_4:+66575502 | Msa0696620:CDS |
| TTGAAAAGCGATACGAACAG+AGG | 0.699253 | 4_4:-66574772 | None:intergenic |
| GAACCGAAGACGTTGCCGAG+AGG | 0.706655 | 4_4:-66574726 | None:intergenic |
| ATCACATCCAATGTTCCAGG+CGG | 0.724421 | 4_4:-66575380 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GAAAATATAAAGTTTTAATT+TGG | + | chr4_4:66576131-66576150 | Msa0696620:intron | 10.0% |
| !!! | TCTTGTCTTATTATTAATTA+CGG | + | chr4_4:66575567-66575586 | Msa0696620:intron | 15.0% |
| !!! | TAATTTGCTACTAAATTTAT+CGG | + | chr4_4:66575833-66575852 | Msa0696620:intron | 15.0% |
| !! | ACATATATTATCAATTATAG+TGG | - | chr4_4:66577467-66577486 | None:intergenic | 15.0% |
| !!! | TTGATAATATATGTCAATAT+TGG | + | chr4_4:66577473-66577492 | Msa0696620:intron | 15.0% |
| !!! | TATATTTTCTCAATTTAGAA+CGG | - | chr4_4:66577616-66577635 | None:intergenic | 15.0% |
| !!! | ATTAAGTTTTTTATCCAAAG+AGG | + | chr4_4:66575174-66575193 | Msa0696620:intron | 20.0% |
| !! | TATTTACTTATGTTCTTGAT+AGG | + | chr4_4:66575354-66575373 | Msa0696620:CDS | 20.0% |
| !! | ATTTACTTATGTTCTTGATA+GGG | + | chr4_4:66575355-66575374 | Msa0696620:CDS | 20.0% |
| !!! | AATTTGCTACTAAATTTATC+GGG | + | chr4_4:66575834-66575853 | Msa0696620:intron | 20.0% |
| !!! | TGCTATTTTTCTTATACAAA+AGG | + | chr4_4:66575860-66575879 | Msa0696620:intron | 20.0% |
| !! | TTTGTATATGTAAATCAGAA+AGG | + | chr4_4:66575973-66575992 | Msa0696620:intron | 20.0% |
| !! | ATTCGTTCAATATATCATAT+GGG | - | chr4_4:66576219-66576238 | None:intergenic | 20.0% |
| !! | CAATACATGTTACTAAATTA+TGG | - | chr4_4:66577103-66577122 | None:intergenic | 20.0% |
| !!! | GTTCTAAATTGAGAAAATAT+AGG | + | chr4_4:66577615-66577634 | Msa0696620:intron | 20.0% |
| !!! | TTTTGAATAAAAAGTAGTCA+TGG | + | chr4_4:66577870-66577889 | Msa0696620:three_prime_UTR | 20.0% |
| !! | TTTGAATAAAAAGTAGTCAT+GGG | + | chr4_4:66577871-66577890 | Msa0696620:three_prime_UTR | 20.0% |
| !! | TTCTAAATTATACAAACAGA+TGG | - | chr4_4:66577903-66577922 | None:intergenic | 20.0% |
| ! | CTCGAAATTTGAAGATATTA+TGG | + | chr4_4:66574892-66574911 | Msa0696620:intron | 25.0% |
| ! | GAAATTTGAAGATATTATGG+AGG | + | chr4_4:66574895-66574914 | Msa0696620:intron | 25.0% |
| ! | AATTTCAGTTGTAACTTAAC+TGG | + | chr4_4:66575201-66575220 | Msa0696620:intron | 25.0% |
| ! | TGATCATAACATGCAAATTA+AGG | - | chr4_4:66575676-66575695 | None:intergenic | 25.0% |
| !! | TTTTTGTGCAAAAGATGATT+TGG | - | chr4_4:66575802-66575821 | None:intergenic | 25.0% |
| !! | GTTTATGTTGTTGTTGTAAA+AGG | + | chr4_4:66575910-66575929 | Msa0696620:intron | 25.0% |
| ! | TTCGTTCAATATATCATATG+GGG | - | chr4_4:66576218-66576237 | None:intergenic | 25.0% |
| ! | CATTCGTTCAATATATCATA+TGG | - | chr4_4:66576220-66576239 | None:intergenic | 25.0% |
| ! | CATATTTCATCAAAACTAAC+TGG | + | chr4_4:66576363-66576382 | Msa0696620:intron | 25.0% |
| ! | GCAACTTATTGCAAAAAAAA+TGG | + | chr4_4:66576432-66576451 | Msa0696620:CDS | 25.0% |
| ! | AACAAGTACATAATTTACAG+AGG | - | chr4_4:66576730-66576749 | None:intergenic | 25.0% |
| ! | AATTATGTACTTGTTTAGCT+TGG | + | chr4_4:66576735-66576754 | Msa0696620:intron | 25.0% |
| !! | AACAAGTACATATTTTACAG+AGG | - | chr4_4:66576819-66576838 | None:intergenic | 25.0% |
| ! | AAATATGTACTTGTTTAGCT+TGG | + | chr4_4:66576824-66576843 | Msa0696620:intron | 25.0% |
| !! | AACAAGTACATATTTTACAG+AGG | - | chr4_4:66576819-66576838 | None:intergenic | 25.0% |
| ! | AATGCAATATTTAAGCAAGT+GGG | + | chr4_4:66576995-66577014 | Msa0696620:intron | 25.0% |
| ! | AAATGTCAATCTCTTAACAA+AGG | - | chr4_4:66577140-66577159 | None:intergenic | 25.0% |
| ! | TACACTATAATAAGCAAACA+TGG | + | chr4_4:66577290-66577309 | Msa0696620:intron | 25.0% |
| ! | CTAAATTGAGAAAATATAGG+TGG | + | chr4_4:66577618-66577637 | Msa0696620:intron | 25.0% |
| ! | ATTCAAAACATCATAGCAAT+GGG | - | chr4_4:66577858-66577877 | None:intergenic | 25.0% |
| ! | TATTCAAAACATCATAGCAA+TGG | - | chr4_4:66577859-66577878 | None:intergenic | 25.0% |
| !! | ATAAGATTTGAGATACTGTA+TGG | + | chr4_4:66578062-66578081 | Msa0696620:three_prime_UTR | 25.0% |
| !! | TAAGATTTGAGATACTGTAT+GGG | + | chr4_4:66578063-66578082 | Msa0696620:three_prime_UTR | 25.0% |
| !!! | GCATTTTTTATGTTATACAC+CGG | + | chr4_4:66578110-66578129 | Msa0696620:three_prime_UTR | 25.0% |
| TGAAATGAAAAAAGAGAGAG+AGG | - | chr4_4:66574838-66574857 | None:intergenic | 30.0% | |
| CAGTGTCATGATATTGAATT+TGG | + | chr4_4:66575099-66575118 | Msa0696620:CDS | 30.0% | |
| AACTGAAATTAGATCCTCTT+TGG | - | chr4_4:66575191-66575210 | None:intergenic | 30.0% | |
| TAACTGGTAACTGTATTTCA+AGG | + | chr4_4:66575217-66575236 | Msa0696620:intron | 30.0% | |
| AACTGGTAACTGTATTTCAA+GGG | + | chr4_4:66575218-66575237 | Msa0696620:intron | 30.0% | |
| ACATAAGTAAATACCTCCAA+AGG | - | chr4_4:66575347-66575366 | None:intergenic | 30.0% | |
| ! | AAAACTAGCTTACAACACTA+AGG | - | chr4_4:66575701-66575720 | None:intergenic | 30.0% |
| ATACAAAAGGATAACGTTAG+TGG | + | chr4_4:66575873-66575892 | Msa0696620:intron | 30.0% | |
| TACAAAAGGATAACGTTAGT+GGG | + | chr4_4:66575874-66575893 | Msa0696620:intron | 30.0% | |
| TTGTAAAAGGATAACGTTTC+CGG | + | chr4_4:66575923-66575942 | Msa0696620:intron | 30.0% | |
| AGAACTAAGTTCTTATACAC+CGG | - | chr4_4:66575945-66575964 | None:intergenic | 30.0% | |
| ! | CTCAATTTTCTGTATTTCTC+TGG | - | chr4_4:66576011-66576030 | None:intergenic | 30.0% |
| GAAATACAGAAAATTGAGCA+TGG | + | chr4_4:66576013-66576032 | Msa0696620:intron | 30.0% | |
| TCGTTCAATATATCATATGG+GGG | - | chr4_4:66576217-66576236 | None:intergenic | 30.0% | |
| ATCACTGCATTCAATATTCT+TGG | + | chr4_4:66576240-66576259 | Msa0696620:intron | 30.0% | |
| !!! | CTGGTTCTATGTATTTTGTT+TGG | + | chr4_4:66576382-66576401 | Msa0696620:intron | 30.0% |
| ! | AATCACAGATTTTCAGAACA+TGG | - | chr4_4:66576594-66576613 | None:intergenic | 30.0% |
| !! | TGTTCTGAAAATCTGTGATT+TGG | + | chr4_4:66576594-66576613 | Msa0696620:intron | 30.0% |
| AATGAAAACAACAAAGAGAG+AGG | - | chr4_4:66576687-66576706 | None:intergenic | 30.0% | |
| AATGAAAACAACAAAGAGAG+AGG | - | chr4_4:66576687-66576706 | None:intergenic | 30.0% | |
| AATGAAAACAACAAAGAGAG+AGG | - | chr4_4:66576687-66576706 | None:intergenic | 30.0% | |
| CACTTGCTTAAATATTGCAT+TGG | - | chr4_4:66576996-66577015 | None:intergenic | 30.0% | |
| CAATGCAATATTTAAGCAAG+TGG | + | chr4_4:66576994-66577013 | Msa0696620:intron | 30.0% | |
| AGAACCTATCACATAATTTG+TGG | + | chr4_4:66577040-66577059 | Msa0696620:intron | 30.0% | |
| AACTCCACAAATTATGTGAT+AGG | - | chr4_4:66577047-66577066 | None:intergenic | 30.0% | |
| GAACTACTTGCAAATCATTT+GGG | - | chr4_4:66577244-66577263 | None:intergenic | 30.0% | |
| AGAACTACTTGCAAATCATT+TGG | - | chr4_4:66577245-66577264 | None:intergenic | 30.0% | |
| TATGTCAATATTGGAGTTCT+TGG | + | chr4_4:66577482-66577501 | Msa0696620:intron | 30.0% | |
| ATGTCAATATTGGAGTTCTT+GGG | + | chr4_4:66577483-66577502 | Msa0696620:intron | 30.0% | |
| AATTGAGAAAATATAGGTGG+AGG | + | chr4_4:66577621-66577640 | Msa0696620:intron | 30.0% | |
| !!! | ATTTTTGACAGGCTTTAGAA+TGG | - | chr4_4:66577716-66577735 | None:intergenic | 30.0% |
| AATAAAAAGTAGTCATGGGT+TGG | + | chr4_4:66577875-66577894 | Msa0696620:three_prime_UTR | 30.0% | |
| GAGAGAAAAAGAGTCGAAAA+TGG | + | chr4_4:66574644-66574663 | Msa0696620:CDS | 35.0% | |
| AAAATGGAGTTACGTGAACT+TGG | + | chr4_4:66574660-66574679 | Msa0696620:CDS | 35.0% | |
| ! | GTTTGCTTGTTCTTCTGAAA+CGG | - | chr4_4:66574751-66574770 | None:intergenic | 35.0% |
| GCTACAATGTATTCACTTCT+CGG | - | chr4_4:66574970-66574989 | None:intergenic | 35.0% | |
| TACATTGTAGCAACTAAGTG+TGG | + | chr4_4:66574979-66574998 | Msa0696620:CDS | 35.0% | |
| TGAATTTGGATCGTTAGATC+AGG | + | chr4_4:66575113-66575132 | Msa0696620:CDS | 35.0% | |
| ACTGGTAACTGTATTTCAAG+GGG | + | chr4_4:66575219-66575238 | Msa0696620:intron | 35.0% | |
| TAAGACAAGACCTTAAGTTC+CGG | - | chr4_4:66575557-66575576 | None:intergenic | 35.0% | |
| ! | AGACCTAATTTGAGTTCACT+TGG | + | chr4_4:66575630-66575649 | Msa0696620:intron | 35.0% |
| CTACCAAGTGAACTCAAATT+AGG | - | chr4_4:66575636-66575655 | None:intergenic | 35.0% | |
| AAACATCATTCAGTACTAGG+AGG | - | chr4_4:66576281-66576300 | None:intergenic | 35.0% | |
| CACAAACATCATTCAGTACT+AGG | - | chr4_4:66576284-66576303 | None:intergenic | 35.0% | |
| ! | CTAGTACTGAATGATGTTTG+TGG | + | chr4_4:66576282-66576301 | Msa0696620:intron | 35.0% |
| ! | GAATCACTGTTTTCTGCTTA+TGG | + | chr4_4:66576328-66576347 | Msa0696620:intron | 35.0% |
| !! | GCAGTACAGCTTGTTAAATA+AGG | + | chr4_4:66576479-66576498 | Msa0696620:CDS | 35.0% |
| GAAATCACATCAGTTCTTGT+TGG | + | chr4_4:66576501-66576520 | Msa0696620:CDS | 35.0% | |
| ! | TTTTGTGCCGTAAAACAAGT+GGG | + | chr4_4:66577065-66577084 | Msa0696620:intron | 35.0% |
| !!! | ATGATAGCCCACTTGTTTTA+CGG | - | chr4_4:66577075-66577094 | None:intergenic | 35.0% |
| ! | ACATGTATTGATCCGTTTGA+AGG | + | chr4_4:66577113-66577132 | Msa0696620:intron | 35.0% |
| CTTAACAAAGGACCTTCAAA+CGG | - | chr4_4:66577128-66577147 | None:intergenic | 35.0% | |
| AGATTGACATTTGCATGCAT+TGG | + | chr4_4:66577148-66577167 | Msa0696620:intron | 35.0% | |
| ! | ACCAACAGGAGTATGAAAAA+TGG | + | chr4_4:66577344-66577363 | Msa0696620:intron | 35.0% |
| !! | TCCATTTTTCATACTCCTGT+TGG | - | chr4_4:66577348-66577367 | None:intergenic | 35.0% |
| GTTCATCTTTATCAAGTGAC+TGG | - | chr4_4:66577594-66577613 | None:intergenic | 35.0% | |
| AAACATCATAGCAATGGGAT+GGG | - | chr4_4:66577853-66577872 | None:intergenic | 35.0% | |
| AAAACATCATAGCAATGGGA+TGG | - | chr4_4:66577854-66577873 | None:intergenic | 35.0% | |
| ! | AGCAGTACGAAAAGTACGAA+TGG | + | chr4_4:66574554-66574573 | Msa0696620:CDS | 40.0% |
| TTACGTGAACTTGGAAGAAC+TGG | + | chr4_4:66574669-66574688 | Msa0696620:CDS | 40.0% | |
| TTGAAAAGCGATACGAACAG+AGG | - | chr4_4:66574775-66574794 | None:intergenic | 40.0% | |
| !! | GTTCGTATCGCTTTTCAATC+CGG | + | chr4_4:66574777-66574796 | Msa0696620:CDS | 40.0% |
| TTGTAGCAACTAAGTGTGGA+AGG | + | chr4_4:66574983-66575002 | Msa0696620:CDS | 40.0% | |
| ! | TAAGTGTGGAAGGTACAAAG+AGG | + | chr4_4:66574993-66575012 | Msa0696620:CDS | 40.0% |
| ! | AAGTGTGGAAGGTACAAAGA+GGG | + | chr4_4:66574994-66575013 | Msa0696620:CDS | 40.0% |
| GACTCGTTTCATTGGGATTA+CGG | + | chr4_4:66575316-66575335 | Msa0696620:CDS | 40.0% | |
| ACTCGTTTCATTGGGATTAC+GGG | + | chr4_4:66575317-66575336 | Msa0696620:CDS | 40.0% | |
| AGTATCACATCCAATGTTCC+AGG | - | chr4_4:66575386-66575405 | None:intergenic | 40.0% | |
| ATTGACAGAGTGATGGCAAT+AGG | - | chr4_4:66575411-66575430 | None:intergenic | 40.0% | |
| TCGAATCATTGACAGAGTGA+TGG | - | chr4_4:66575418-66575437 | None:intergenic | 40.0% | |
| CTCTGTCAATGATTCGACTT+TGG | + | chr4_4:66575421-66575440 | Msa0696620:CDS | 40.0% | |
| TGTCAATGATTCGACTTTGG+AGG | + | chr4_4:66575424-66575443 | Msa0696620:CDS | 40.0% | |
| !! | TGCAAAAGATGATTTGGTGC+AGG | - | chr4_4:66575796-66575815 | None:intergenic | 40.0% |
| AAGGATAACGTTAGTGGGAT+AGG | + | chr4_4:66575879-66575898 | Msa0696620:intron | 40.0% | |
| AGGATAACGTTAGTGGGATA+GGG | + | chr4_4:66575880-66575899 | Msa0696620:intron | 40.0% | |
| TATGGGGGAAATCAGTAGTT+TGG | - | chr4_4:66576202-66576221 | None:intergenic | 40.0% | |
| ! | ACTGTTTTCTGCTTATGGTC+TGG | + | chr4_4:66576333-66576352 | Msa0696620:intron | 40.0% |
| !! | TAAGCCTTGCTCTAAAGCTT+TGG | + | chr4_4:66576629-66576648 | Msa0696620:intron | 40.0% |
| !! | GATACCAAAGCTTTAGAGCA+AGG | - | chr4_4:66576636-66576655 | None:intergenic | 40.0% |
| CTTTGGTATCACTGTATAGC+TGG | + | chr4_4:66576646-66576665 | Msa0696620:intron | 40.0% | |
| AGAGAGAGGTAACAATCTGA+TGG | - | chr4_4:66576673-66576692 | None:intergenic | 40.0% | |
| ATGTGATAGGTTCTTCGTCT+AGG | - | chr4_4:66577034-66577053 | None:intergenic | 40.0% | |
| ! | GTTTTGTGCCGTAAAACAAG+TGG | + | chr4_4:66577064-66577083 | Msa0696620:intron | 40.0% |
| AGCCTGTCAAAAATCAGTCA+TGG | + | chr4_4:66577722-66577741 | Msa0696620:CDS | 40.0% | |
| AAAAATCAGTCATGGCCTAG+CGG | + | chr4_4:66577730-66577749 | Msa0696620:CDS | 40.0% | |
| CTTCTACTGCTGTTGTAACT+TGG | + | chr4_4:66577926-66577945 | Msa0696620:three_prime_UTR | 40.0% | |
| GGACTTAAACTAAGCTCCGT+CGG | + | chr4_4:66574690-66574709 | Msa0696620:CDS | 45.0% | |
| GACTTAAACTAAGCTCCGTC+GGG | + | chr4_4:66574691-66574710 | Msa0696620:CDS | 45.0% | |
| !! | AGTGTCGAAGAAGTTGATGC+CGG | - | chr4_4:66574799-66574818 | None:intergenic | 45.0% |
| GAGAGAGAGGAAATAGCGTA+CGG | - | chr4_4:66574825-66574844 | None:intergenic | 45.0% | |
| !! | ACACTGTCTGAGAAAGTGCT+CGG | + | chr4_4:66574919-66574938 | Msa0696620:CDS | 45.0% |
| CAAACTCTCGTCTACACTTG+TGG | - | chr4_4:66575046-66575065 | None:intergenic | 45.0% | |
| CACAAGTGTAGACGAGAGTT+TGG | + | chr4_4:66575044-66575063 | Msa0696620:CDS | 45.0% | |
| GTGTAGACGAGAGTTTGGAA+AGG | + | chr4_4:66575049-66575068 | Msa0696620:CDS | 45.0% | |
| TCCAGAAACTGAAGGAAGCA+GGG | + | chr4_4:66575291-66575310 | Msa0696620:CDS | 45.0% | |
| CAGGGAAGACTCGTTTCATT+GGG | + | chr4_4:66575309-66575328 | Msa0696620:CDS | 45.0% | |
| ATCACATCCAATGTTCCAGG+CGG | - | chr4_4:66575383-66575402 | None:intergenic | 45.0% | |
| ACACCCTTGGACTTCAGATA+GGG | - | chr4_4:66575458-66575477 | None:intergenic | 45.0% | |
| AACACCCTTGGACTTCAGAT+AGG | - | chr4_4:66575459-66575478 | None:intergenic | 45.0% | |
| ! | TATCTGAAGTCCAAGGGTGT+TGG | + | chr4_4:66575458-66575477 | Msa0696620:CDS | 45.0% |
| ! | ACTGATAATGCCAACACCCT+TGG | - | chr4_4:66575471-66575490 | None:intergenic | 45.0% |
| CATTATCAGTGCTTCTCCGT+TGG | + | chr4_4:66575481-66575500 | Msa0696620:CDS | 45.0% | |
| !! | TAAGCAAGTGGGCTATCATC+AGG | + | chr4_4:66577006-66577025 | Msa0696620:intron | 45.0% |
| ! | GTTGGTAGAGAGTATGAGGA+AGG | - | chr4_4:66577330-66577349 | None:intergenic | 45.0% |
| TCCTCATACTCTCTACCAAC+AGG | + | chr4_4:66577330-66577349 | Msa0696620:intron | 45.0% | |
| ! | TCCTGTTGGTAGAGAGTATG+AGG | - | chr4_4:66577334-66577353 | None:intergenic | 45.0% |
| AGAAGCTGCAAGTTCTCTTG+CGG | - | chr4_4:66577659-66577678 | None:intergenic | 45.0% | |
| !! | GGCCATGACTGATTTTTGAC+AGG | - | chr4_4:66577727-66577746 | None:intergenic | 45.0% |
| GCACAAAAAACACCATGTGC+AGG | - | chr4_4:66577782-66577801 | None:intergenic | 45.0% | |
| GATACTGTATGGGACACTGT+AGG | + | chr4_4:66578073-66578092 | Msa0696620:three_prime_UTR | 45.0% | |
| AAACTAAGCTCCGTCGGGTT+CGG | + | chr4_4:66574696-66574715 | Msa0696620:CDS | 50.0% | |
| !! | GTCTGAGAAAGTGCTCGGAA+AGG | + | chr4_4:66574924-66574943 | Msa0696620:CDS | 50.0% |
| TCCTGCACTCCAGAAACTGA+AGG | + | chr4_4:66575283-66575302 | Msa0696620:CDS | 50.0% | |
| !! | TCCTTCAGTTTCTGGAGTGC+AGG | - | chr4_4:66575287-66575306 | None:intergenic | 50.0% |
| CTCCAGAAACTGAAGGAAGC+AGG | + | chr4_4:66575290-66575309 | Msa0696620:CDS | 50.0% | |
| TCCCTGCTTCCTTCAGTTTC+TGG | - | chr4_4:66575295-66575314 | None:intergenic | 50.0% | |
| GCAGGGAAGACTCGTTTCAT+TGG | + | chr4_4:66575308-66575327 | Msa0696620:CDS | 50.0% | |
| TGGGATTACGGGACTTCCTT+TGG | + | chr4_4:66575328-66575347 | Msa0696620:CDS | 50.0% | |
| GATTACGGGACTTCCTTTGG+AGG | + | chr4_4:66575331-66575350 | Msa0696620:CDS | 50.0% | |
| ! | AGTGCCCTATCTGAAGTCCA+AGG | + | chr4_4:66575451-66575470 | Msa0696620:CDS | 50.0% |
| ! | GTGCCCTATCTGAAGTCCAA+GGG | + | chr4_4:66575452-66575471 | Msa0696620:CDS | 50.0% |
| AAGCAGGATGCCATTCAGGA+GGG | - | chr4_4:66575532-66575551 | None:intergenic | 50.0% | |
| TGAATGGCATCCTGCTTCAC+CGG | + | chr4_4:66575535-66575554 | Msa0696620:CDS | 50.0% | |
| TCCTGCTTCACCGGAACTTA+AGG | + | chr4_4:66575544-66575563 | Msa0696620:CDS | 50.0% | |
| ACCTTAAGTTCCGGTGAAGC+AGG | - | chr4_4:66575548-66575567 | None:intergenic | 50.0% | |
| TGGCATGAGATCTGTCGAAC+AGG | + | chr4_4:66576521-66576540 | Msa0696620:CDS | 50.0% | |
| TTGGAGTTCTTGGGTGCACT+AGG | + | chr4_4:66577492-66577511 | Msa0696620:intron | 50.0% | |
| GCAAGAGAACTTGCAGCTTC+TGG | + | chr4_4:66577658-66577677 | Msa0696620:CDS | 50.0% | |
| !! | AGCTTCTGGAATCGACGAAG+CGG | + | chr4_4:66577672-66577691 | Msa0696620:CDS | 50.0% |
| CTCATCTCCTCCAGCTACTT+GGG | + | chr4_4:66577801-66577820 | Msa0696620:three_prime_UTR | 50.0% | |
| TACTCTTGCTCCCAAGTAGC+TGG | - | chr4_4:66577814-66577833 | None:intergenic | 50.0% | |
| TCTCCTCTCGGCAACGTCTT+CGG | + | chr4_4:66574723-66574742 | Msa0696620:CDS | 55.0% | |
| GTTCTTGATAGGGTTCCGCC+TGG | + | chr4_4:66575365-66575384 | Msa0696620:CDS | 55.0% | |
| TAGGGTTCCGCCTGGAACAT+TGG | + | chr4_4:66575373-66575392 | Msa0696620:CDS | 55.0% | |
| AGTGCTTCTCCGTTGGCGAT+GGG | + | chr4_4:66575488-66575507 | Msa0696620:CDS | 55.0% | |
| GTGAGAAGACCCATCGCCAA+CGG | - | chr4_4:66575500-66575519 | None:intergenic | 55.0% | |
| ATGGGTCTTCTCACTGAGGC+TGG | + | chr4_4:66575506-66575525 | Msa0696620:CDS | 55.0% | |
| GAAGCAGGATGCCATTCAGG+AGG | - | chr4_4:66575533-66575552 | None:intergenic | 55.0% | |
| GGTGAAGCAGGATGCCATTC+AGG | - | chr4_4:66575536-66575555 | None:intergenic | 55.0% | |
| GAAGCGGCTCTGTCAGAAGT+CGG | + | chr4_4:66577688-66577707 | Msa0696620:CDS | 55.0% | |
| CAACTCTGCTGGATTCCGCT+AGG | - | chr4_4:66577748-66577767 | None:intergenic | 55.0% | |
| ACACCATGTGCAGGCAGCAA+GGG | - | chr4_4:66577773-66577792 | None:intergenic | 55.0% | |
| AACACCATGTGCAGGCAGCA+AGG | - | chr4_4:66577774-66577793 | None:intergenic | 55.0% | |
| GCTCATCTCCTCCAGCTACT+TGG | + | chr4_4:66577800-66577819 | Msa0696620:three_prime_UTR | 55.0% | |
| TCTTGCTCCCAAGTAGCTGG+AGG | - | chr4_4:66577811-66577830 | None:intergenic | 55.0% | |
| AGGAGAAGCTCCGAACCCGA+CGG | - | chr4_4:66574709-66574728 | None:intergenic | 60.0% | |
| GGGTTCGGAGCTTCTCCTCT+CGG | + | chr4_4:66574711-66574730 | Msa0696620:CDS | 60.0% | |
| GAACCGAAGACGTTGCCGAG+AGG | - | chr4_4:66574729-66574748 | None:intergenic | 60.0% | |
| CAGTGCTTCTCCGTTGGCGA+TGG | + | chr4_4:66575487-66575506 | Msa0696620:CDS | 60.0% | |
| GGCGATGGGTCTTCTCACTG+AGG | + | chr4_4:66575502-66575521 | Msa0696620:CDS | 60.0% | |
| CAGCAAGGGGTCAACTCTGC+TGG | - | chr4_4:66577759-66577778 | None:intergenic | 60.0% | |
| CACCATGTGCAGGCAGCAAG+GGG | - | chr4_4:66577772-66577791 | None:intergenic | 60.0% | |
| ! | CTGAGGCTGGCCCTCCTGAA+TGG | + | chr4_4:66575519-66575538 | Msa0696620:CDS | 65.0% |
| GACCCCTTGCTGCCTGCACA+TGG | + | chr4_4:66577767-66577786 | Msa0696620:exon | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 66574544 | 66578139 | 66574544 | ID=Msa0696620;Name=Msa0696620 |
| chr4_4 | mRNA | 66574544 | 66578139 | 66574544 | ID=Msa0696620-mRNA-1;Parent=Msa0696620;Name=Msa0696620-mRNA-1;_AED=0.04;_eAED=0.04;_QI=5|1|1|1|1|1|5|371|354 |
| chr4_4 | exon | 66574544 | 66574823 | 66574544 | ID=Msa0696620-mRNA-1:exon:19329;Parent=Msa0696620-mRNA-1 |
| chr4_4 | exon | 66574906 | 66575134 | 66574906 | ID=Msa0696620-mRNA-1:exon:19330;Parent=Msa0696620-mRNA-1 |
| chr4_4 | exon | 66575266 | 66575565 | 66575266 | ID=Msa0696620-mRNA-1:exon:19331;Parent=Msa0696620-mRNA-1 |
| chr4_4 | exon | 66576414 | 66576542 | 66576414 | ID=Msa0696620-mRNA-1:exon:19332;Parent=Msa0696620-mRNA-1 |
| chr4_4 | exon | 66577637 | 66578139 | 66577637 | ID=Msa0696620-mRNA-1:exon:19333;Parent=Msa0696620-mRNA-1 |
| chr4_4 | five_prime_UTR | 66574544 | 66574548 | 66574544 | ID=Msa0696620-mRNA-1:five_prime_utr;Parent=Msa0696620-mRNA-1 |
| chr4_4 | CDS | 66574549 | 66574823 | 66574549 | ID=Msa0696620-mRNA-1:cds;Parent=Msa0696620-mRNA-1 |
| chr4_4 | CDS | 66574906 | 66575134 | 66574906 | ID=Msa0696620-mRNA-1:cds;Parent=Msa0696620-mRNA-1 |
| chr4_4 | CDS | 66575266 | 66575565 | 66575266 | ID=Msa0696620-mRNA-1:cds;Parent=Msa0696620-mRNA-1 |
| chr4_4 | CDS | 66576414 | 66576542 | 66576414 | ID=Msa0696620-mRNA-1:cds;Parent=Msa0696620-mRNA-1 |
| chr4_4 | CDS | 66577637 | 66577768 | 66577637 | ID=Msa0696620-mRNA-1:cds;Parent=Msa0696620-mRNA-1 |
| chr4_4 | three_prime_UTR | 66577769 | 66578139 | 66577769 | ID=Msa0696620-mRNA-1:three_prime_utr;Parent=Msa0696620-mRNA-1 |
| Gene Sequence |
| Protein sequence |
