AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0008330


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0008330 MtrunA17_Chr1g0147271 94.545 385 9 1 1 373 1 385 0.0 734
Msa0008330 MtrunA17_Chr1g0146631 65.067 375 79 7 1 373 1 325 5.27e-163 459
Msa0008330 MtrunA17_Chr1g0147331 65.333 375 78 7 1 373 1 325 8.51e-157 443
Msa0008330 MtrunA17_Chr1g0147311 61.680 381 87 7 1 373 27 356 5.42e-152 432
Msa0008330 MtrunA17_Chr1g0147261 61.230 374 70 7 1 373 1 300 4.83e-149 423
Msa0008330 MtrunA17_Chr1g0147241 60.428 374 86 8 1 373 1 313 2.85e-144 411
Msa0008330 MtrunA17_Chr1g0147291 72.222 288 56 3 88 373 2 267 2.09e-142 405
Msa0008330 MtrunA17_Chr1g0147301 72.222 270 70 3 109 373 16 285 1.89e-138 395
Msa0008330 MtrunA17_Chr1g0147321 80.786 229 41 1 144 372 12 237 2.69e-135 386
Msa0008330 MtrunA17_Chr3g0139431 53.476 374 117 6 1 371 1 320 6.45e-134 385
Msa0008330 MtrunA17_Chr1g0147251 70.763 236 62 4 139 373 14 243 6.48e-115 334
Msa0008330 MtrunA17_Chr4g0034821 42.857 224 123 4 154 373 70 292 3.32e-60 196
Msa0008330 MtrunA17_Chr3g0138231 43.750 224 121 3 154 373 45 267 9.82e-60 194
Msa0008330 MtrunA17_Chr3g0144451 43.304 224 122 4 154 373 54 276 2.65e-58 191
Msa0008330 MtrunA17_Chr3g0144421 43.243 222 120 4 154 371 82 301 3.47e-57 189
Msa0008330 MtrunA17_Chr3g0144411 41.284 218 118 5 159 371 325 537 1.53e-47 169
Msa0008330 MtrunA17_Chr3g0144391 39.171 217 124 5 159 371 292 504 7.61e-46 164
Msa0008330 MtrunA17_Chr4g0034451 36.287 237 140 7 141 371 294 525 1.95e-44 160
Msa0008330 MtrunA17_Chr4g0034731 37.443 219 127 6 159 371 217 431 1.01e-43 157
Msa0008330 MtrunA17_Chr4g0034721 37.443 219 127 6 159 371 361 575 1.20e-40 151
Msa0008330 MtrunA17_Chr4g0034691 36.986 219 128 6 159 371 493 707 5.33e-40 150
Msa0008330 MtrunA17_Chr8g0365361 36.073 219 130 5 159 372 181 394 4.86e-39 143
Msa0008330 MtrunA17_Chr8g0365401 35.616 219 131 5 159 372 412 625 2.38e-36 139
Msa0008330 MtrunA17_Chr8g0355861 36.199 221 117 8 152 371 62 259 2.45e-36 133
Msa0008330 MtrunA17_Chr8g0355311 45.139 144 72 4 228 371 53 189 1.03e-35 129
Msa0008330 MtrunA17_Chr5g0413591 33.641 217 136 5 159 371 415 627 1.32e-34 134
Msa0008330 MtrunA17_Chr8g0365381 35.160 219 132 6 159 372 429 642 1.75e-34 134
Msa0008330 MtrunA17_Chr3g0117791 37.173 191 113 4 186 372 439 626 1.25e-33 131
Msa0008330 MtrunA17_Chr8g0355331 41.333 150 81 3 222 371 278 420 6.66e-33 127
Msa0008330 MtrunA17_Chr8g0355871 35.909 220 107 8 158 371 30 221 6.83e-33 123
Msa0008330 MtrunA17_Chr1g0147231 76.829 82 17 2 145 225 50 130 1.31e-32 119
Msa0008330 MtrunA17_Chr8g0355321 42.361 144 76 3 228 371 165 301 1.35e-32 124
Msa0008330 MtrunA17_Chr6g0485051 33.333 195 122 6 186 373 13 206 1.77e-32 121
Msa0008330 MtrunA17_Chr2g0318901 35.981 214 108 7 159 371 73 258 3.14e-32 122
Msa0008330 MtrunA17_Chr8g0355841 45.985 137 67 4 235 371 379 508 6.23e-31 123
Msa0008330 MtrunA17_Chr2g0318871 32.889 225 122 7 148 371 62 258 5.42e-30 116
Msa0008330 MtrunA17_Chr8g0355831 42.466 146 77 3 226 371 212 350 8.08e-30 117
Msa0008330 MtrunA17_Chr2g0318931 32.159 227 104 6 159 371 79 269 2.31e-29 114
Msa0008330 MtrunA17_Chr4g0076231 35.484 155 96 3 219 370 3 156 6.57e-27 104
Msa0008330 MtrunA17_Chr5g0412991 30.942 223 140 6 157 372 195 410 9.54e-26 107
Msa0008330 MtrunA17_Chr5g0412991 30.460 174 114 4 185 354 14 184 2.43e-16 80.1
Msa0008330 MtrunA17_Chr5g0412981 30.942 223 140 6 157 372 195 410 9.93e-26 107
Msa0008330 MtrunA17_Chr5g0412981 31.034 174 113 4 185 354 14 184 1.22e-16 80.9
Msa0008330 MtrunA17_Chr1g0168781 39.456 147 77 4 228 371 121 258 1.19e-25 104
Msa0008330 MtrunA17_Chr5g0412951 30.526 190 125 4 185 370 21 207 1.85e-21 91.7
Msa0008330 MtrunA17_Chr8g0371951 41.772 79 42 2 286 361 10 87 1.17e-17 77.4
Msa0008330 MtrunA17_Chr4g0034051 44.737 76 39 3 299 371 3 78 1.20e-16 74.3
Msa0008330 MtrunA17_Chr5g0413021 32.576 132 83 3 244 372 1 129 2.00e-16 75.1
Msa0008330 MtrunA17_Chr5g0413001 35.211 71 45 1 303 372 2 72 3.39e-11 58.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0008330 AT5G25610.1 50.995 402 156 9 1 372 1 391 4.08e-118 348
Msa0008330 AT1G49320.1 38.528 231 132 5 152 373 51 280 7.46e-50 169
Msa0008330 AT1G60390.1 35.780 218 128 6 159 370 409 620 6.31e-35 135
Msa0008330 AT1G70370.2 35.023 217 133 4 159 371 411 623 2.44e-34 134
Msa0008330 AT1G70370.1 35.023 217 133 4 159 371 411 623 2.44e-34 134
Msa0008330 AT1G23760.1 34.101 217 135 5 159 371 407 619 1.13e-32 129

Find 84 sgRNAs with CRISPR-Local

Find 329 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAGCTTTGTGTAACATCTT+TGG 0.229077 1_1:+12010563 Msa0008330:CDS
AACTATTCCCTTCCTATAAA+TGG 0.229668 1_1:+12006424 Msa0008330:five_prime_UTR
TCAACTTTGCTTGAAGAAAA+AGG 0.265366 1_1:-12010438 None:intergenic
CTTGAAAAGCCAAATGTTTA+GGG 0.266054 1_1:-12010875 None:intergenic
ACTTGAAAAGCCAAATGTTT+AGG 0.272436 1_1:-12010876 None:intergenic
GGCAAAAGGTGTGAAGAAAT+TGG 0.273962 1_1:+12010686 Msa0008330:CDS
TTCCACAGGATCATGTTGTT+TGG 0.285326 1_1:+12010940 Msa0008330:CDS
TTGGACTTCCAATACAATTC+AGG 0.287171 1_1:-12006737 None:intergenic
ATTGAATTAGCAACTTCTTT+AGG 0.294671 1_1:-12010414 None:intergenic
TCCACAGGATCATGTTGTTT+GGG 0.305699 1_1:+12010941 Msa0008330:CDS
TTCAATTACTACCATTTAGT+TGG 0.337782 1_1:+12006509 Msa0008330:five_prime_UTR
TGGCCTCACACACCATTTAT+AGG 0.339500 1_1:-12006436 None:intergenic
TAACTAGAGCTCCAACTAAA+TGG 0.348136 1_1:-12006520 None:intergenic
AGGAGATCTGTGATGGCTTT+TGG 0.348386 1_1:-12006779 None:intergenic
GTGCCTTTGGAAGGTGTTGA+TGG 0.355685 1_1:+12010801 Msa0008330:CDS
CATTTGAGTTGTGGAAAGTT+TGG 0.360457 1_1:-12006756 None:intergenic
GGAGGTGTGAATGTTGATTC+AGG 0.361960 1_1:+12010003 Msa0008330:CDS
AAGAAGAAAAGTGCTACATT+TGG 0.370145 1_1:-12010312 None:intergenic
ACAATGGAACCCTAAACATT+TGG 0.377406 1_1:+12010866 Msa0008330:CDS
TAAAGTTTACTCTGTGCCTT+TGG 0.379443 1_1:+12010788 Msa0008330:CDS
CCTTACCACCTGAATTGTAT+TGG 0.385889 1_1:+12006729 Msa0008330:CDS
TGTAACATCTTTGGAATCAA+TGG 0.425700 1_1:+12010572 Msa0008330:CDS
CCTTGATTGAGAACATGTTA+AGG 0.434483 1_1:-12010467 None:intergenic
TAGTTAATCAAATTCCACTA+TGG 0.435473 1_1:+12006537 Msa0008330:exon
GCAAAAGGTGTGAAGAAATT+GGG 0.438714 1_1:+12010687 Msa0008330:CDS
CAAGAATATGTAATGGCAAA+AGG 0.445313 1_1:+12010672 Msa0008330:CDS
TGTGGAAGGAAGTGACAAAC+TGG 0.450964 1_1:-12010924 None:intergenic
ATCACAGATCTCCTTCATCT+TGG 0.452756 1_1:+12006788 Msa0008330:CDS
GATTTCACTACTTCGAAACT+TGG 0.458312 1_1:+12010597 Msa0008330:CDS
ACATTCACTGAGGTTCCTCC+TGG 0.460070 1_1:-12010036 None:intergenic
GTAAATGTTCATGCAGGAAA+AGG 0.467323 1_1:+12010201 Msa0008330:CDS
TTAGAAAAGGATTTACATCA+AGG 0.470233 1_1:+12010333 Msa0008330:CDS
CAAGTGCTCAAAGTTCAACC+TGG 0.472763 1_1:+12010894 Msa0008330:CDS
ACATTCACTGCTGTTCCACC+TGG 0.477807 1_1:-12010099 None:intergenic
AATGGTGTGTGAGGCCACTT+AGG 0.478244 1_1:+12006442 Msa0008330:five_prime_UTR
TTCAGGTGGTAAGGCAGCAT+TGG 0.480612 1_1:-12006720 None:intergenic
TTTCCAACTGAAACATGTAC+TGG 0.492608 1_1:-12010234 None:intergenic
TTAACTGCTGTTCCACCACC+TGG 0.493188 1_1:-12010162 None:intergenic
TACATTGAGTATGATAAAGA+TGG 0.494921 1_1:-12006575 None:intergenic
CCTTAACATGTTCTCAATCA+AGG 0.497540 1_1:+12010467 Msa0008330:CDS
AGTTTGTCACTTCCTTCCAC+AGG 0.501409 1_1:+12010926 Msa0008330:CDS
TGTGAAGAAAACGGCATCAA+AGG 0.507431 1_1:+12010534 Msa0008330:CDS
CCAATACAATTCAGGTGGTA+AGG 0.508538 1_1:-12006729 None:intergenic
GGTGGAGTCCATGTTGATGC+AGG 0.515104 1_1:+12010066 Msa0008330:CDS
GTTTACTCTGTGCCTTTGGA+AGG 0.519063 1_1:+12010792 Msa0008330:CDS
GTTCATGTAAATGCAGGTAA+AGG 0.521792 1_1:+12010135 Msa0008330:CDS
ACCTCAGTGAATGTTGGAAA+AGG 0.535317 1_1:+12010045 Msa0008330:CDS
GGTGGAACAGCAGTGAATGT+TGG 0.538800 1_1:+12010102 Msa0008330:CDS
ATTGAAAATAAAGATGATTG+AGG 0.541321 1_1:-12006492 None:intergenic
TGACAAACTGGAACAGTCCC+AGG 0.541759 1_1:-12010912 None:intergenic
GTTCATGCAGGAAAAGGAAG+AGG 0.544075 1_1:+12010207 Msa0008330:CDS
ACAGCAGTTAATGTTGGAAA+AGG 0.545041 1_1:+12010174 Msa0008330:CDS
TCAGTGAATGTTGGAAAAGG+TGG 0.545979 1_1:+12010048 Msa0008330:CDS
AAACCAGTACATGTTTCAGT+TGG 0.548855 1_1:+12010231 Msa0008330:CDS
ATGGTGTGTGAGGCCACTTA+GGG 0.552741 1_1:+12006443 Msa0008330:five_prime_UTR
GGTGGAGTTCATGTAAATGC+AGG 0.553242 1_1:+12010129 Msa0008330:CDS
CTCACACACCATTTATAGGA+AGG 0.562402 1_1:-12006432 None:intergenic
GCAGTTAATGTTGGAAAAGG+TGG 0.564699 1_1:+12010177 Msa0008330:CDS
ATAAGCGAGTGTGAAGAAAA+CGG 0.567198 1_1:+12010525 Msa0008330:CDS
GGAGGAACCTCAGTGAATGT+TGG 0.568767 1_1:+12010039 Msa0008330:CDS
GGTGGAACAGCAGTTAATGT+TGG 0.569822 1_1:+12010168 Msa0008330:CDS
GGTGGTGTAAATGTTCATGC+AGG 0.572281 1_1:+12010195 Msa0008330:CDS
GCAGTGAATGTTGGAAAAGG+TGG 0.574359 1_1:+12010111 Msa0008330:CDS
TAAATGACGAAATTCCATAG+TGG 0.577590 1_1:-12006551 None:intergenic
ATATGTACTAACCAAGATGA+AGG 0.581463 1_1:-12006799 None:intergenic
GACTTCCAATACAATTCAGG+TGG 0.581844 1_1:-12006734 None:intergenic
TGACTTGCAAGAATATGTAA+TGG 0.583650 1_1:+12010665 Msa0008330:CDS
ACACAGCAACAGCTTTAACT+CGG 0.585180 1_1:-12010827 None:intergenic
ATAGAATGAAGATCCCTAAG+TGG 0.600789 1_1:-12006456 None:intergenic
AACATGTTCTCAATCAAGGA+AGG 0.606590 1_1:+12010471 Msa0008330:CDS
GGTAAAGGAAAACCAGGTGG+TGG 0.607966 1_1:+12010150 Msa0008330:CDS
AAGTGCTCAAAGTTCAACCT+GGG 0.613750 1_1:+12010895 Msa0008330:CDS
ACAGCAGTGAATGTTGGAAA+AGG 0.617678 1_1:+12010108 Msa0008330:CDS
AAGATGAAGGAGATCTGTGA+TGG 0.624460 1_1:-12006786 None:intergenic
CTTCCTATAAATGGTGTGTG+AGG 0.625916 1_1:+12006433 Msa0008330:five_prime_UTR
CTTCCATCAACACCTTCCAA+AGG 0.627468 1_1:-12010804 None:intergenic
TCAGTAGATGTAGGAAAAGG+AGG 0.632977 1_1:+12009985 Msa0008330:intron
TCACACACCATTTATAGGAA+GGG 0.640577 1_1:-12006431 None:intergenic
AAACAACATGATCCTGTGGA+AGG 0.641220 1_1:-12010938 None:intergenic
ACCCAAACAACATGATCCTG+TGG 0.647573 1_1:-12010942 None:intergenic
AATGCAGGTAAAGGAAAACC+AGG 0.656269 1_1:+12010144 Msa0008330:CDS
AGAAAACGGCATCAAAGGAG+AGG 0.662103 1_1:+12010539 Msa0008330:CDS
GTCACACTGATACTTCACAA+TGG 0.703629 1_1:+12010850 Msa0008330:CDS
GCAGGTAAAGGAAAACCAGG+TGG 0.762633 1_1:+12010147 Msa0008330:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAATAGAAACATATATTT+GGG - chr1_1:12007335-12007354 None:intergenic 10.0%
!! TATAAATAGAAACATATATT+TGG - chr1_1:12007336-12007355 None:intergenic 10.0%
!!! TTTTATTAAATAAAATGAAC+GGG + chr1_1:12008452-12008471 Msa0008330:intron 10.0%
!!! AAAATATAATTTTTTTCCTA+TGG - chr1_1:12009167-12009186 None:intergenic 10.0%
!!! GGAAAAAAATTATATTTTTT+TGG + chr1_1:12009169-12009188 Msa0008330:intron 10.0%
!! TAAAAAGGAACTAAAATATT+AGG - chr1_1:12006632-12006651 None:intergenic 15.0%
!! ATAAAAAAAAAAGCTACAAA+TGG + chr1_1:12007421-12007440 Msa0008330:intron 15.0%
!! ATATCATCATATATAAAGAT+TGG + chr1_1:12008517-12008536 Msa0008330:intron 15.0%
!! AGAAAAATAAAATATGTTGA+GGG + chr1_1:12009125-12009144 Msa0008330:intron 15.0%
!!! AAAAACATAATCTTTTTGAA+CGG - chr1_1:12009601-12009620 None:intergenic 15.0%
!! TTTGGAAATCTTAAAAAAAA+TGG + chr1_1:12009773-12009792 Msa0008330:intron 15.0%
!! ATTGAAAATAAAGATGATTG+AGG - chr1_1:12006495-12006514 None:intergenic 20.0%
!! GTAGTATATATAGTTATGAA+AGG + chr1_1:12006829-12006848 Msa0008330:intron 20.0%
!! TCTGGTAAAAAATAGTTATA+TGG + chr1_1:12006903-12006922 Msa0008330:intron 20.0%
!!! CATTTTTTGCAATCAAATTT+AGG - chr1_1:12007001-12007020 None:intergenic 20.0%
!!! AAATAAATTTGTTCACACAA+GGG - chr1_1:12007223-12007242 None:intergenic 20.0%
!!! TAAATAAATTTGTTCACACA+AGG - chr1_1:12007224-12007243 None:intergenic 20.0%
!! TTTATATATTATCTCCTAAG+AGG - chr1_1:12008291-12008310 None:intergenic 20.0%
!!! CATATTTTATTTTTCTCAAG+TGG - chr1_1:12009121-12009140 None:intergenic 20.0%
!! GAGAAAAATAAAATATGTTG+AGG + chr1_1:12009124-12009143 Msa0008330:intron 20.0%
!!! TATTTTTGTAATTTCTCCAT+AGG + chr1_1:12009148-12009167 Msa0008330:intron 20.0%
!!! AAAATTATATTTTTTTGGGG+TGG + chr1_1:12009174-12009193 Msa0008330:intron 20.0%
!!! AAATTATATTTTTTTGGGGT+GGG + chr1_1:12009175-12009194 Msa0008330:intron 20.0%
!!! AACTTCTAAAAGTAACTTTT+TGG - chr1_1:12009301-12009320 None:intergenic 20.0%
!!! TTCTTCTAAAAGTAACTTTT+TGG - chr1_1:12009359-12009378 None:intergenic 20.0%
!!! ATTGGTTTGTAATAAGAAAT+CGG - chr1_1:12009569-12009588 None:intergenic 20.0%
!!! AAAACATAATCTTTTTGAAC+GGG - chr1_1:12009600-12009619 None:intergenic 20.0%
!! CAAACTAATGAAATTTGATT+CGG + chr1_1:12009879-12009898 Msa0008330:intron 20.0%
!! ATATATATGAATGTGTAGAT+TGG + chr1_1:12009944-12009963 Msa0008330:intron 20.0%
! TTCAATTACTACCATTTAGT+TGG + chr1_1:12006509-12006528 Msa0008330:five_prime_UTR 25.0%
! TAGTTAATCAAATTCCACTA+TGG + chr1_1:12006537-12006556 Msa0008330:exon 25.0%
! TACATTGAGTATGATAAAGA+TGG - chr1_1:12006578-12006597 None:intergenic 25.0%
! GGAACCAAAATAACAAAAAT+GGG - chr1_1:12006876-12006895 None:intergenic 25.0%
! AGGAACCAAAATAACAAAAA+TGG - chr1_1:12006877-12006896 None:intergenic 25.0%
!!! TATTTTTTACCAGAGATGTT+AGG - chr1_1:12006897-12006916 None:intergenic 25.0%
! AGTCATTTACTAATCAATCA+AGG - chr1_1:12007194-12007213 None:intergenic 25.0%
! TTGTTTGGTATAAAAGAAAG+TGG - chr1_1:12008024-12008043 None:intergenic 25.0%
! CTAGAGAAAACTAAAGAAAT+TGG + chr1_1:12008156-12008175 Msa0008330:intron 25.0%
! ACTCACGTATTTATGAAATA+AGG - chr1_1:12008203-12008222 None:intergenic 25.0%
! AAAAGCTCAATCTTAAAATG+TGG + chr1_1:12008490-12008509 Msa0008330:intron 25.0%
! TCTAACACTTACTCATTTAT+TGG + chr1_1:12008585-12008604 Msa0008330:intron 25.0%
!! TATATTAGAGCATATTTTGC+TGG - chr1_1:12008776-12008795 None:intergenic 25.0%
! AGAACAAGCAAAATGATTTA+TGG + chr1_1:12009264-12009283 Msa0008330:intron 25.0%
! AGAACAAGCAAAATGATTTA+TGG + chr1_1:12009264-12009283 Msa0008330:intron 25.0%
! TCAAAACAATGAACAAGTAT+AGG + chr1_1:12009422-12009441 Msa0008330:intron 25.0%
! TGGATTACAAAAATATGACT+TGG - chr1_1:12009496-12009515 None:intergenic 25.0%
!!! CATATTTTTGTAATCCATTC+TGG + chr1_1:12009499-12009518 Msa0008330:intron 25.0%
!!! ATTTAACCGTGTACATTTTT+TGG + chr1_1:12009755-12009774 Msa0008330:intron 25.0%
! AGATTTCCAAAAAATGTACA+CGG - chr1_1:12009764-12009783 None:intergenic 25.0%
!! CAAATTTCATTAGTTTGGAT+TGG - chr1_1:12009876-12009895 None:intergenic 25.0%
! CGAATCAAATTTCATTAGTT+TGG - chr1_1:12009881-12009900 None:intergenic 25.0%
! TTAGAAAAGGATTTACATCA+AGG + chr1_1:12010333-12010352 Msa0008330:CDS 25.0%
! ATTGAATTAGCAACTTCTTT+AGG - chr1_1:12010417-12010436 None:intergenic 25.0%
AACTATTCCCTTCCTATAAA+TGG + chr1_1:12006424-12006443 Msa0008330:five_prime_UTR 30.0%
TAAATGACGAAATTCCATAG+TGG - chr1_1:12006554-12006573 None:intergenic 30.0%
ATATGTACTAACCAAGATGA+AGG - chr1_1:12006802-12006821 None:intergenic 30.0%
!!! CACACCCATTTTTGTTATTT+TGG + chr1_1:12006869-12006888 Msa0008330:intron 30.0%
TATGGAATGACTTATGAGAT+AGG + chr1_1:12006921-12006940 Msa0008330:intron 30.0%
AAAAATGCACGTGATAACTA+AGG + chr1_1:12007014-12007033 Msa0008330:intron 30.0%
AAAATGCACGTGATAACTAA+GGG + chr1_1:12007015-12007034 Msa0008330:intron 30.0%
ATCTTTCCTCTTACTTTCTT+TGG - chr1_1:12007054-12007073 None:intergenic 30.0%
GTAAGAGGAAAGATTGTTAA+AGG + chr1_1:12007075-12007094 Msa0008330:intron 30.0%
! GTTAAAGGAAAGAAAGTATG+AGG + chr1_1:12007090-12007109 Msa0008330:intron 30.0%
!! AGATGATTTGTTAGGTTGTT+TGG + chr1_1:12007130-12007149 Msa0008330:intron 30.0%
TTTGGATCCATAGAAAGATA+AGG + chr1_1:12007685-12007704 Msa0008330:intron 30.0%
TTGGATCCATAGAAAGATAA+GGG + chr1_1:12007686-12007705 Msa0008330:intron 30.0%
TTCTTTCCCTTATCTTTCTA+TGG - chr1_1:12007695-12007714 None:intergenic 30.0%
TAGAAAGATAAGGGAAAGAA+AGG + chr1_1:12007695-12007714 Msa0008330:intron 30.0%
!! AATGACATCAAGGCTATTTT+GGG - chr1_1:12007879-12007898 None:intergenic 30.0%
GTAAAAAGACAATGACATCA+AGG - chr1_1:12007889-12007908 None:intergenic 30.0%
ACTAATACACATCAACTTCA+AGG + chr1_1:12007944-12007963 Msa0008330:intron 30.0%
AAAGTGGAATAGAAAGTGAA+AGG - chr1_1:12008008-12008027 None:intergenic 30.0%
!!! AGATGATTGTTTTGGTTGTT+TGG - chr1_1:12008039-12008058 None:intergenic 30.0%
! AGAAAGTGAGATGATTGTTT+TGG - chr1_1:12008047-12008066 None:intergenic 30.0%
TCTCTAGACCAATTACTTTA+GGG - chr1_1:12008143-12008162 None:intergenic 30.0%
TTCTCTAGACCAATTACTTT+AGG - chr1_1:12008144-12008163 None:intergenic 30.0%
GAAATTGGTCCTATTGATAA+AGG + chr1_1:12008171-12008190 Msa0008330:intron 30.0%
CAATAATTATGCATGAGTTG+GGG - chr1_1:12008674-12008693 None:intergenic 30.0%
GCAATAATTATGCATGAGTT+GGG - chr1_1:12008675-12008694 None:intergenic 30.0%
TGCAATAATTATGCATGAGT+TGG - chr1_1:12008676-12008695 None:intergenic 30.0%
CTCATGCATAATTATTGCAA+TGG + chr1_1:12008677-12008696 Msa0008330:intron 30.0%
! AAGCCATAACCTTTCATTTT+CGG - chr1_1:12008995-12009014 None:intergenic 30.0%
AAATGAAAGGTTATGGCTTA+TGG + chr1_1:12008996-12009015 Msa0008330:intron 30.0%
AATGAAAGGTTATGGCTTAT+GGG + chr1_1:12008997-12009016 Msa0008330:intron 30.0%
! GTTTTGTGTATGTGTAATAG+AGG + chr1_1:12009074-12009093 Msa0008330:intron 30.0%
!! TTTTGTAATCCATTCTGGTT+CGG + chr1_1:12009504-12009523 Msa0008330:intron 30.0%
!! CTAATGAAATTTGATTCGGT+CGG + chr1_1:12009883-12009902 Msa0008330:intron 30.0%
!! TAATGAAATTTGATTCGGTC+GGG + chr1_1:12009884-12009903 Msa0008330:intron 30.0%
CTGTGTCAATTCATAATCAT+AGG - chr1_1:12009921-12009940 None:intergenic 30.0%
GCAGCATAATTGTACAAAAA+TGG - chr1_1:12010267-12010286 None:intergenic 30.0%
!! AAGAAGAAAAGTGCTACATT+TGG - chr1_1:12010315-12010334 None:intergenic 30.0%
! AGCACTTTTCTTCTTAGAAA+AGG + chr1_1:12010320-12010339 Msa0008330:CDS 30.0%
TCAACTTTGCTTGAAGAAAA+AGG - chr1_1:12010441-12010460 None:intergenic 30.0%
! AAAGCTTTGTGTAACATCTT+TGG + chr1_1:12010563-12010582 Msa0008330:CDS 30.0%
!! TGTAACATCTTTGGAATCAA+TGG + chr1_1:12010572-12010591 Msa0008330:CDS 30.0%
! TGACTTGCAAGAATATGTAA+TGG + chr1_1:12010665-12010684 Msa0008330:CDS 30.0%
CAAGAATATGTAATGGCAAA+AGG + chr1_1:12010672-12010691 Msa0008330:CDS 30.0%
CTTGAAAAGCCAAATGTTTA+GGG - chr1_1:12010878-12010897 None:intergenic 30.0%
ACTTGAAAAGCCAAATGTTT+AGG - chr1_1:12010879-12010898 None:intergenic 30.0%
TCACACACCATTTATAGGAA+GGG - chr1_1:12006434-12006453 None:intergenic 35.0%
ATAGAATGAAGATCCCTAAG+TGG - chr1_1:12006459-12006478 None:intergenic 35.0%
TAACTAGAGCTCCAACTAAA+TGG - chr1_1:12006523-12006542 None:intergenic 35.0%
TTGGACTTCCAATACAATTC+AGG - chr1_1:12006740-12006759 None:intergenic 35.0%
!! CATTTGAGTTGTGGAAAGTT+TGG - chr1_1:12006759-12006778 None:intergenic 35.0%
!!! ATTTTGGTTCCTAACATCTC+TGG + chr1_1:12006885-12006904 Msa0008330:intron 35.0%
GTAAGAGGAAAGATTGTAAG+AGG + chr1_1:12007060-12007079 Msa0008330:intron 35.0%
! GAAAGTATGAGGAAAGTGAA+TGG + chr1_1:12007101-12007120 Msa0008330:intron 35.0%
!! GGAAAGTGAGATGATTTGTT+AGG + chr1_1:12007122-12007141 Msa0008330:intron 35.0%
GAAAGTGATAAGAAAGTGAG+TGG + chr1_1:12007160-12007179 Msa0008330:intron 35.0%
ACTTTCTGCTCATTTAAGCA+AGG - chr1_1:12007505-12007524 None:intergenic 35.0%
!! AAAGAAGGCATGGTTTTTGT+GGG - chr1_1:12007543-12007562 None:intergenic 35.0%
ATGGAAAGTTTCTTGGAATC+CGG - chr1_1:12007608-12007627 None:intergenic 35.0%
AAAGAGGATGGAAAGTTTCT+TGG - chr1_1:12007615-12007634 None:intergenic 35.0%
AGATAAGGGAAAGAAAGGAT+AGG + chr1_1:12007700-12007719 Msa0008330:intron 35.0%
GATAAGGGAAAGAAAGGATA+GGG + chr1_1:12007701-12007720 Msa0008330:intron 35.0%
! GATAGGGAAAGAAAGTTTTG+AGG + chr1_1:12007777-12007796 Msa0008330:intron 35.0%
ATAGAAATGCACCAACTTCA+TGG + chr1_1:12007846-12007865 Msa0008330:intron 35.0%
! CAATGACATCAAGGCTATTT+TGG - chr1_1:12007880-12007899 None:intergenic 35.0%
GGATGATCAAAGAAAGTGAA+AGG - chr1_1:12008113-12008132 None:intergenic 35.0%
! CAATTACTTTAGGGACTGTT+TGG - chr1_1:12008134-12008153 None:intergenic 35.0%
CAAACAGTCCCTAAAGTAAT+TGG + chr1_1:12008132-12008151 Msa0008330:intron 35.0%
TGGTCCTATTGATAAAGGTT+CGG + chr1_1:12008176-12008195 Msa0008330:intron 35.0%
TGAACCGAACCTTTATCAAT+AGG - chr1_1:12008183-12008202 None:intergenic 35.0%
! TTTGAGTTTCCTTACCATTG+TGG + chr1_1:12008253-12008272 Msa0008330:intron 35.0%
AGTAGCTAGAAATTCACCAT+AGG + chr1_1:12008359-12008378 Msa0008330:intron 35.0%
AGTATACACTCTCCATAAGT+TGG - chr1_1:12008415-12008434 None:intergenic 35.0%
TAAAGATTGGACCAACTTAG+AGG + chr1_1:12008530-12008549 Msa0008330:intron 35.0%
TTGTTAGCATTCCTCTAAGT+TGG - chr1_1:12008544-12008563 None:intergenic 35.0%
AAGAGTAATGCTAGAGAAAG+TGG - chr1_1:12008632-12008651 None:intergenic 35.0%
CTGAATTACGCTCACTAAAA+CGG + chr1_1:12008709-12008728 Msa0008330:intron 35.0%
TGAATTACGCTCACTAAAAC+GGG + chr1_1:12008710-12008729 Msa0008330:intron 35.0%
CGGAGCTAGAAAAAATATCA+GGG + chr1_1:12008745-12008764 Msa0008330:intron 35.0%
GGAGCTAGAAAAAATATCAG+GGG + chr1_1:12008746-12008765 Msa0008330:intron 35.0%
CTAGAAAAAATATCAGGGGT+GGG + chr1_1:12008750-12008769 Msa0008330:intron 35.0%
AATGAGTGACAACTGACAAT+CGG + chr1_1:12008966-12008985 Msa0008330:intron 35.0%
!! ATAGAGGAAGCATTAAAGTC+TGG + chr1_1:12009090-12009109 Msa0008330:intron 35.0%
!! TAGAGGAAGCATTAAAGTCT+GGG + chr1_1:12009091-12009110 Msa0008330:intron 35.0%
ATAACCGATTATGTATCCAG+AGG - chr1_1:12009233-12009252 None:intergenic 35.0%
! AAACCACTTCGAGTTTCATT+GGG - chr1_1:12009535-12009554 None:intergenic 35.0%
TAATCATCGCGATTATGTGT+GGG - chr1_1:12009822-12009841 None:intergenic 35.0%
TTAATCATCGCGATTATGTG+TGG - chr1_1:12009823-12009842 None:intergenic 35.0%
ACACATAATCGCGATGATTA+AGG + chr1_1:12009822-12009841 Msa0008330:intron 35.0%
GATTCAGGAAAAACAAAACC+AGG + chr1_1:12010018-12010037 Msa0008330:CDS 35.0%
!! TTGTTTTTCCTGCATCAACA+TGG - chr1_1:12010077-12010096 None:intergenic 35.0%
GTTCATGTAAATGCAGGTAA+AGG + chr1_1:12010135-12010154 Msa0008330:CDS 35.0%
ACAGCAGTTAATGTTGGAAA+AGG + chr1_1:12010174-12010193 Msa0008330:CDS 35.0%
GTAAATGTTCATGCAGGAAA+AGG + chr1_1:12010201-12010220 Msa0008330:CDS 35.0%
AAACCAGTACATGTTTCAGT+TGG + chr1_1:12010231-12010250 Msa0008330:CDS 35.0%
TTTCCAACTGAAACATGTAC+TGG - chr1_1:12010237-12010256 None:intergenic 35.0%
CCTTGATTGAGAACATGTTA+AGG - chr1_1:12010470-12010489 None:intergenic 35.0%
CCTTAACATGTTCTCAATCA+AGG + chr1_1:12010467-12010486 Msa0008330:CDS 35.0%
AACATGTTCTCAATCAAGGA+AGG + chr1_1:12010471-12010490 Msa0008330:CDS 35.0%
ATAAGCGAGTGTGAAGAAAA+CGG + chr1_1:12010525-12010544 Msa0008330:CDS 35.0%
GATTTCACTACTTCGAAACT+TGG + chr1_1:12010597-12010616 Msa0008330:CDS 35.0%
! GCAAAAGGTGTGAAGAAATT+GGG + chr1_1:12010687-12010706 Msa0008330:CDS 35.0%
GACAGTAAAAAACTGCGTAA+GGG - chr1_1:12010752-12010771 None:intergenic 35.0%
TGACAGTAAAAAACTGCGTA+AGG - chr1_1:12010753-12010772 None:intergenic 35.0%
TAAAGTTTACTCTGTGCCTT+TGG + chr1_1:12010788-12010807 Msa0008330:CDS 35.0%
ACAATGGAACCCTAAACATT+TGG + chr1_1:12010866-12010885 Msa0008330:CDS 35.0%
CTCACACACCATTTATAGGA+AGG - chr1_1:12006435-12006454 None:intergenic 40.0%
CTTCCTATAAATGGTGTGTG+AGG + chr1_1:12006433-12006452 Msa0008330:five_prime_UTR 40.0%
AGGCACATGCTAGAATAGTT+TGG - chr1_1:12006612-12006631 None:intergenic 40.0%
CCAATACAATTCAGGTGGTA+AGG - chr1_1:12006732-12006751 None:intergenic 40.0%
CCTTACCACCTGAATTGTAT+TGG + chr1_1:12006729-12006748 Msa0008330:CDS 40.0%
GACTTCCAATACAATTCAGG+TGG - chr1_1:12006737-12006756 None:intergenic 40.0%
AAGATGAAGGAGATCTGTGA+TGG - chr1_1:12006789-12006808 None:intergenic 40.0%
ATCACAGATCTCCTTCATCT+TGG + chr1_1:12006788-12006807 Msa0008330:CDS 40.0%
! GTTATGAAAGGAACCGCTTT+TGG + chr1_1:12006841-12006860 Msa0008330:intron 40.0%
TGGGTGTGAAAATCCAAAAG+CGG - chr1_1:12006857-12006876 None:intergenic 40.0%
! GTGATAACTAAGGGTGTGTT+TGG + chr1_1:12007024-12007043 Msa0008330:intron 40.0%
GGATCACCAAAGAAAGTAAG+AGG + chr1_1:12007045-12007064 Msa0008330:intron 40.0%
AAATCACAACACCCAAAGCA+TGG + chr1_1:12007446-12007465 Msa0008330:intron 40.0%
AATCACAACACCCAAAGCAT+GGG + chr1_1:12007447-12007466 Msa0008330:intron 40.0%
!! GAAAGAAGGCATGGTTTTTG+TGG - chr1_1:12007544-12007563 None:intergenic 40.0%
AAGATTGTGGAAAGAAGGCA+TGG - chr1_1:12007553-12007572 None:intergenic 40.0%
GTGGAAAGATTGTGGAAAGA+AGG - chr1_1:12007558-12007577 None:intergenic 40.0%
ATGTCAGAGTGGAAAGATTG+TGG - chr1_1:12007566-12007585 None:intergenic 40.0%
ACAATCTTTCCACTCTGACA+TGG + chr1_1:12007565-12007584 Msa0008330:intron 40.0%
TGGAAAGTTTCTTGGAATCC+GGG - chr1_1:12007607-12007626 None:intergenic 40.0%
TGTTTCCAGGGAAAGAAAGA+GGG - chr1_1:12007646-12007665 None:intergenic 40.0%
TTGTTTCCAGGGAAAGAAAG+AGG - chr1_1:12007647-12007666 None:intergenic 40.0%
TTAGGGTCTGTTTGTTTCCA+GGG - chr1_1:12007658-12007677 None:intergenic 40.0%
TGGAAACAAACAGACCCTAA+GGG + chr1_1:12007658-12007677 Msa0008330:intron 40.0%
TGGATCCAAACATACCCTTA+GGG - chr1_1:12007675-12007694 None:intergenic 40.0%
ATGGATCCAAACATACCCTT+AGG - chr1_1:12007676-12007695 None:intergenic 40.0%
! ATAGTTTTCCACCGTTTGAC+AGG + chr1_1:12007744-12007763 Msa0008330:intron 40.0%
CCTTTCTTTGTCCTGTCAAA+CGG - chr1_1:12007758-12007777 None:intergenic 40.0%
TGACAGGACAAAGAAAGGAT+AGG + chr1_1:12007760-12007779 Msa0008330:intron 40.0%
GACAGGACAAAGAAAGGATA+GGG + chr1_1:12007761-12007780 Msa0008330:intron 40.0%
!!! AGGGAAAGAAAGTTTTGAGG+TGG + chr1_1:12007780-12007799 Msa0008330:intron 40.0%
!!! GGGAAAGAAAGTTTTGAGGT+GGG + chr1_1:12007781-12007800 Msa0008330:intron 40.0%
! CGCAGAAAGTTTTTGAACGT+GGG - chr1_1:12007808-12007827 None:intergenic 40.0%
CCACGTTCAAAAACTTTCTG+CGG + chr1_1:12007806-12007825 Msa0008330:intron 40.0%
CACGTTCAAAAACTTTCTGC+GGG + chr1_1:12007807-12007826 Msa0008330:intron 40.0%
! TGGGCATTTTACCATGAAGT+TGG - chr1_1:12007860-12007879 None:intergenic 40.0%
GACTGAGGAAAGATTATACG+AGG - chr1_1:12008083-12008102 None:intergenic 40.0%
GTGAAAGGAAAGAAAGACTG+AGG - chr1_1:12008098-12008117 None:intergenic 40.0%
AGAAGTTCTCCACAATGGTA+AGG - chr1_1:12008265-12008284 None:intergenic 40.0%
ATTCCTCGCTTATTCACCTA+TGG - chr1_1:12008378-12008397 None:intergenic 40.0%
GAGGTTTGAACTCCAACTTA+TGG + chr1_1:12008400-12008419 Msa0008330:intron 40.0%
GCGGAGCTAGAAAAAATATC+AGG + chr1_1:12008744-12008763 Msa0008330:intron 40.0%
GCTAGAAAAAATATCAGGGG+TGG + chr1_1:12008749-12008768 Msa0008330:intron 40.0%
GATCCAACTAAGAGAGAGAA+GGG + chr1_1:12008892-12008911 Msa0008330:intron 40.0%
! TCACCTCCATTTTCATTGCT+CGG - chr1_1:12008937-12008956 None:intergenic 40.0%
TTGTCAGTTGTCACTCATTC+CGG - chr1_1:12008965-12008984 None:intergenic 40.0%
! CCATAACCTTTCATTTTCGG+CGG - chr1_1:12008992-12009011 None:intergenic 40.0%
GTTATGGCTTATGGGTTTGT+AGG + chr1_1:12009005-12009024 Msa0008330:intron 40.0%
AGAGGAAGAGGAAATAAGTG+AGG + chr1_1:12009037-12009056 Msa0008330:intron 40.0%
! CAAACCACTTCGAGTTTCAT+TGG - chr1_1:12009536-12009555 None:intergenic 40.0%
!! AAACTCGAAGTGGTTTGCTT+TGG + chr1_1:12009539-12009558 Msa0008330:intron 40.0%
GTAGATTGGACAGAAGAGAA+AGG + chr1_1:12009958-12009977 Msa0008330:intron 40.0%
ACGTCAGTAGATGTAGGAAA+AGG + chr1_1:12009982-12010001 Msa0008330:intron 40.0%
TCAGTAGATGTAGGAAAAGG+AGG + chr1_1:12009985-12010004 Msa0008330:intron 40.0%
TCAGGAAAAACAAAACCAGG+AGG + chr1_1:12010021-12010040 Msa0008330:CDS 40.0%
ACCTCAGTGAATGTTGGAAA+AGG + chr1_1:12010045-12010064 Msa0008330:CDS 40.0%
! ACCTTTTCCAACATTCACTG+AGG - chr1_1:12010049-12010068 None:intergenic 40.0%
TCAGTGAATGTTGGAAAAGG+TGG + chr1_1:12010048-12010067 Msa0008330:CDS 40.0%
ACAGCAGTGAATGTTGGAAA+AGG + chr1_1:12010108-12010127 Msa0008330:CDS 40.0%
AATGCAGGTAAAGGAAAACC+AGG + chr1_1:12010144-12010163 Msa0008330:CDS 40.0%
GCAGTTAATGTTGGAAAAGG+TGG + chr1_1:12010177-12010196 Msa0008330:CDS 40.0%
TGTGAAGAAAACGGCATCAA+AGG + chr1_1:12010534-12010553 Msa0008330:CDS 40.0%
! GGCAAAAGGTGTGAAGAAAT+TGG + chr1_1:12010686-12010705 Msa0008330:CDS 40.0%
! ACACAGCAACAGCTTTAACT+CGG - chr1_1:12010830-12010849 None:intergenic 40.0%
GTCACACTGATACTTCACAA+TGG + chr1_1:12010850-12010869 Msa0008330:CDS 40.0%
AAGTGCTCAAAGTTCAACCT+GGG + chr1_1:12010895-12010914 Msa0008330:CDS 40.0%
AAACAACATGATCCTGTGGA+AGG - chr1_1:12010941-12010960 None:intergenic 40.0%
TTCCACAGGATCATGTTGTT+TGG + chr1_1:12010940-12010959 Msa0008330:CDS 40.0%
! TCCACAGGATCATGTTGTTT+GGG + chr1_1:12010941-12010960 Msa0008330:CDS 40.0%
TGGCCTCACACACCATTTAT+AGG - chr1_1:12006439-12006458 None:intergenic 45.0%
!!! GGCTTTTGGCATTTGAGTTG+TGG - chr1_1:12006768-12006787 None:intergenic 45.0%
! AGGAGATCTGTGATGGCTTT+TGG - chr1_1:12006782-12006801 None:intergenic 45.0%
! AGCAGAAAGTTTTCTGTCCG+TGG + chr1_1:12007515-12007534 Msa0008330:intron 45.0%
! GCAGAAAGTTTTCTGTCCGT+GGG + chr1_1:12007516-12007535 Msa0008330:intron 45.0%
TCTGACATGGAACCAAACGA+TGG + chr1_1:12007578-12007597 Msa0008330:intron 45.0%
AAAGAGGGTGGAAGGTAAAG+AGG - chr1_1:12007631-12007650 None:intergenic 45.0%
CTTAGGGTCTGTTTGTTTCC+AGG - chr1_1:12007659-12007678 None:intergenic 45.0%
CTGGAAACAAACAGACCCTA+AGG + chr1_1:12007657-12007676 Msa0008330:intron 45.0%
! ACAGACCCTAAGGGTATGTT+TGG + chr1_1:12007667-12007686 Msa0008330:intron 45.0%
GGATAGGGAAAGAAAGTGAG+TGG + chr1_1:12007716-12007735 Msa0008330:intron 45.0%
TTCTTTGTCCTGTCAAACGG+TGG - chr1_1:12007755-12007774 None:intergenic 45.0%
CCGTTTGACAGGACAAAGAA+AGG + chr1_1:12007755-12007774 Msa0008330:intron 45.0%
! CCGCAGAAAGTTTTTGAACG+TGG - chr1_1:12007809-12007828 None:intergenic 45.0%
AAAAACTTTCTGCGGGTGCA+AGG + chr1_1:12007814-12007833 Msa0008330:intron 45.0%
GGCTAAGAAGTTCTCCACAA+TGG - chr1_1:12008270-12008289 None:intergenic 45.0%
GGAGAACTTCTTAGCCTCTT+AGG + chr1_1:12008274-12008293 Msa0008330:intron 45.0%
TCACCATAGGTGAATAAGCG+AGG + chr1_1:12008372-12008391 Msa0008330:intron 45.0%
GTGAATAAGCGAGGAATACG+AGG + chr1_1:12008381-12008400 Msa0008330:intron 45.0%
! ATTATGCATGAGTTGGGGCT+AGG - chr1_1:12008669-12008688 None:intergenic 45.0%
ACTAAAACGGGTGCATACAG+TGG + chr1_1:12008722-12008741 Msa0008330:intron 45.0%
CGATCCAACTAAGAGAGAGA+AGG + chr1_1:12008891-12008910 Msa0008330:intron 45.0%
ACTCCCTTCTCTCTCTTAGT+TGG - chr1_1:12008898-12008917 None:intergenic 45.0%
CAATGAAAATGGAGGTGACG+CGG + chr1_1:12008939-12008958 Msa0008330:intron 45.0%
CCGCCGAAAATGAAAGGTTA+TGG + chr1_1:12008989-12009008 Msa0008330:intron 45.0%
!! AGGAAGCATTAAAGTCTGGG+TGG + chr1_1:12009094-12009113 Msa0008330:intron 45.0%
TCCGCCTCTGGATACATAAT+CGG + chr1_1:12009226-12009245 Msa0008330:intron 45.0%
ACCGATTATGTATCCAGAGG+CGG - chr1_1:12009230-12009249 None:intergenic 45.0%
!! GTATAGGAGTGTTCTCGAGT+CGG + chr1_1:12009438-12009457 Msa0008330:intron 45.0%
! CACTTCGAGTTTCATTGGGA+TGG - chr1_1:12009531-12009550 None:intergenic 45.0%
CATCCCAATGAAACTCGAAG+TGG + chr1_1:12009529-12009548 Msa0008330:intron 45.0%
TTTGAACGGGTCGAGTTCAT+TGG - chr1_1:12009587-12009606 None:intergenic 45.0%
!! CGATTATGTGTGGGTTGGTT+TGG - chr1_1:12009813-12009832 None:intergenic 45.0%
! AAAGGCACGTCAGTAGATGT+AGG + chr1_1:12009976-12009995 Msa0008330:intron 45.0%
!! GGAGGTGTGAATGTTGATTC+AGG + chr1_1:12010003-12010022 Msa0008330:CDS 45.0%
GATGCAGGAAAAACAAAGCC+AGG + chr1_1:12010081-12010100 Msa0008330:CDS 45.0%
GCAGTGAATGTTGGAAAAGG+TGG + chr1_1:12010111-12010130 Msa0008330:CDS 45.0%
GGTGGAGTTCATGTAAATGC+AGG + chr1_1:12010129-12010148 Msa0008330:CDS 45.0%
GGTGGAACAGCAGTTAATGT+TGG + chr1_1:12010168-12010187 Msa0008330:CDS 45.0%
GGTGGTGTAAATGTTCATGC+AGG + chr1_1:12010195-12010214 Msa0008330:CDS 45.0%
GTTCATGCAGGAAAAGGAAG+AGG + chr1_1:12010207-12010226 Msa0008330:CDS 45.0%
AGAAAACGGCATCAAAGGAG+AGG + chr1_1:12010539-12010558 Msa0008330:CDS 45.0%
GTTTACTCTGTGCCTTTGGA+AGG + chr1_1:12010792-12010811 Msa0008330:CDS 45.0%
CTTCCATCAACACCTTCCAA+AGG - chr1_1:12010807-12010826 None:intergenic 45.0%
CAAGTGCTCAAAGTTCAACC+TGG + chr1_1:12010894-12010913 Msa0008330:CDS 45.0%
TGTGGAAGGAAGTGACAAAC+TGG - chr1_1:12010927-12010946 None:intergenic 45.0%
! AGTTTGTCACTTCCTTCCAC+AGG + chr1_1:12010926-12010945 Msa0008330:CDS 45.0%
ACCCAAACAACATGATCCTG+TGG - chr1_1:12010945-12010964 None:intergenic 45.0%
!! TTTATTTATGAATATTAAAA+AGG - chr1_1:12006647-12006666 None:intergenic 5.0%
!! AAAATAAAAAATAAAATCTT+AGG - chr1_1:12006964-12006983 None:intergenic 5.0%
!!! ATTTTATTAAATAAAATGAA+CGG + chr1_1:12008451-12008470 Msa0008330:intron 5.0%
!!! GAAAAAAATTATATTTTTTT+GGG + chr1_1:12009170-12009189 Msa0008330:intron 5.0%
!!! AAAAAAATTATATTTTTTTG+GGG + chr1_1:12009171-12009190 Msa0008330:intron 5.0%
AATGGTGTGTGAGGCCACTT+AGG + chr1_1:12006442-12006461 Msa0008330:five_prime_UTR 50.0%
ATGGTGTGTGAGGCCACTTA+GGG + chr1_1:12006443-12006462 Msa0008330:five_prime_UTR 50.0%
TTCAGGTGGTAAGGCAGCAT+TGG - chr1_1:12006723-12006742 None:intergenic 50.0%
ACCCAAAGCATGGGTGCTTT+AGG + chr1_1:12007456-12007475 Msa0008330:intron 50.0%
! GCCTAAAGCACCCATGCTTT+GGG - chr1_1:12007460-12007479 None:intergenic 50.0%
! TGCCTAAAGCACCCATGCTT+TGG - chr1_1:12007461-12007480 None:intergenic 50.0%
! CATGGTTTTTGTGGGACCCA+CGG - chr1_1:12007535-12007554 None:intergenic 50.0%
! CGTTTGGTTCCATGTCAGAG+TGG - chr1_1:12007577-12007596 None:intergenic 50.0%
AGGGTGGAAGGTAAAGAGGA+TGG - chr1_1:12007627-12007646 None:intergenic 50.0%
AGGGAAAGAAAGAGGGTGGA+AGG - chr1_1:12007639-12007658 None:intergenic 50.0%
TTCCACCCTCTTTCTTTCCC+TGG + chr1_1:12007638-12007657 Msa0008330:intron 50.0%
TTCCAGGGAAAGAAAGAGGG+TGG - chr1_1:12007643-12007662 None:intergenic 50.0%
AAAACGGGTGCATACAGTGG+CGG + chr1_1:12008725-12008744 Msa0008330:intron 50.0%
! TAAGAGAGAGAAGGGAGTGC+CGG + chr1_1:12008900-12008919 Msa0008330:intron 50.0%
TCGACGCCGAGCAATGAAAA+TGG + chr1_1:12008928-12008947 Msa0008330:intron 50.0%
ACGCCGAGCAATGAAAATGG+AGG + chr1_1:12008931-12008950 Msa0008330:intron 50.0%
AATCGGCCGCCGAAAATGAA+AGG + chr1_1:12008983-12009002 Msa0008330:intron 50.0%
GTTTGTAGGTCGCGTAACAG+AGG + chr1_1:12009019-12009038 Msa0008330:intron 50.0%
!!! TATTTTTTTGGGGTGGGCCG+TGG + chr1_1:12009181-12009200 Msa0008330:intron 50.0%
! AGGCTTATATGGGCTGAGGT+GGG - chr1_1:12009207-12009226 None:intergenic 50.0%
GATTATGTATCCAGAGGCGG+AGG - chr1_1:12009227-12009246 None:intergenic 50.0%
CATCGCGATTATGTGTGGGT+TGG - chr1_1:12009818-12009837 None:intergenic 50.0%
! GATTCGGTCGGGTAAGAGTT+TGG + chr1_1:12009895-12009914 Msa0008330:intron 50.0%
ACATTCACTGAGGTTCCTCC+TGG - chr1_1:12010039-12010058 None:intergenic 50.0%
GGAGGAACCTCAGTGAATGT+TGG + chr1_1:12010039-12010058 Msa0008330:CDS 50.0%
GCAGGAAAAACAAAGCCAGG+TGG + chr1_1:12010084-12010103 Msa0008330:CDS 50.0%
ACATTCACTGCTGTTCCACC+TGG - chr1_1:12010102-12010121 None:intergenic 50.0%
GGTGGAACAGCAGTGAATGT+TGG + chr1_1:12010102-12010121 Msa0008330:CDS 50.0%
GCAGGTAAAGGAAAACCAGG+TGG + chr1_1:12010147-12010166 Msa0008330:CDS 50.0%
GGTAAAGGAAAACCAGGTGG+TGG + chr1_1:12010150-12010169 Msa0008330:CDS 50.0%
TTAACTGCTGTTCCACCACC+TGG - chr1_1:12010165-12010184 None:intergenic 50.0%
!! GTGCCTTTGGAAGGTGTTGA+TGG + chr1_1:12010801-12010820 Msa0008330:CDS 50.0%
TGACAAACTGGAACAGTCCC+AGG - chr1_1:12010915-12010934 None:intergenic 50.0%
GGAACCAAACGATGGAAGCC+CGG + chr1_1:12007586-12007605 Msa0008330:intron 55.0%
GAATCCGGGCTTCCATCGTT+TGG - chr1_1:12007593-12007612 None:intergenic 55.0%
AGGTCGCGTAACAGAGGAAG+AGG + chr1_1:12009025-12009044 Msa0008330:intron 55.0%
! GAGGCTTATATGGGCTGAGG+TGG - chr1_1:12009208-12009227 None:intergenic 55.0%
CCAGAGGCGGAGGCTTATAT+GGG - chr1_1:12009217-12009236 None:intergenic 55.0%
TCCAGAGGCGGAGGCTTATA+TGG - chr1_1:12009218-12009237 None:intergenic 55.0%
!! TAGGAGTGTTCTCGAGTCGG+AGG + chr1_1:12009441-12009460 Msa0008330:intron 55.0%
TGGGATGGACCGAACCAGAA+TGG - chr1_1:12009516-12009535 None:intergenic 55.0%
GGTGGAGTCCATGTTGATGC+AGG + chr1_1:12010066-12010085 Msa0008330:CDS 55.0%
GAAAATGGAGGTGACGCGGC+CGG + chr1_1:12008943-12008962 Msa0008330:intron 60.0%
! ATATGGGCTGAGGTGGGCCA+CGG - chr1_1:12009201-12009220 None:intergenic 60.0%
! GCGGAGGCTTATATGGGCTG+AGG - chr1_1:12009211-12009230 None:intergenic 60.0%
CCCATATAAGCCTCCGCCTC+TGG + chr1_1:12009214-12009233 Msa0008330:intron 60.0%
!! GAGAGAAGGGAGTGCCGGAG+TGG + chr1_1:12008905-12008924 Msa0008330:intron 65.0%
!! TTGCTCGGCGTCGACCACTC+CGG - chr1_1:12008922-12008941 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 12006412 12010974 12006412 ID=Msa0008330;Name=Msa0008330
chr1_1 mRNA 12006412 12010974 12006412 ID=Msa0008330-mRNA-1;Parent=Msa0008330;Name=Msa0008330-mRNA-1;_AED=0.39;_eAED=0.39;_QI=144|0.5|0.66|1|0.5|1|3|0|373
chr1_1 exon 12006412 12006594 12006412 ID=Msa0008330-mRNA-1:exon:4546;Parent=Msa0008330-mRNA-1
chr1_1 exon 12006704 12006809 12006704 ID=Msa0008330-mRNA-1:exon:4547;Parent=Msa0008330-mRNA-1
chr1_1 exon 12009998 12010974 12009998 ID=Msa0008330-mRNA-1:exon:4548;Parent=Msa0008330-mRNA-1
chr1_1 five_prime_UTR 12006412 12006555 12006412 ID=Msa0008330-mRNA-1:five_prime_utr;Parent=Msa0008330-mRNA-1
chr1_1 CDS 12006556 12006594 12006556 ID=Msa0008330-mRNA-1:cds;Parent=Msa0008330-mRNA-1
chr1_1 CDS 12006704 12006809 12006704 ID=Msa0008330-mRNA-1:cds;Parent=Msa0008330-mRNA-1
chr1_1 CDS 12009998 12010974 12009998 ID=Msa0008330-mRNA-1:cds;Parent=Msa0008330-mRNA-1
Gene Sequence

>Msa0008330

ATGGAATTTCGTCATTTATCCATCTTTATCATACTCAATCTTGCACTTGTAGCAACCAATGCTGCCTTACCACCTGAATTGTATTGGAAGTCCAAACTTTCCACAACTCAAATGCCAAAAGCCATCACAGATCTCCTTCATCTTGGAAAAGGAGGTGTGAATGTTGATTCAGGAAAAACAAAACCAGGAGGAACCTCAGTGAATGTTGGAAAAGGTGGAGTCCATGTTGATGCAGGAAAAACAAAGCCAGGTGGAACAGCAGTGAATGTTGGAAAAGGTGGAGTTCATGTAAATGCAGGTAAAGGAAAACCAGGTGGTGGAACAGCAGTTAATGTTGGAAAAGGTGGTGTAAATGTTCATGCAGGAAAAGGAAGAGGAAAACCAGTACATGTTTCAGTTGGAAACAAATCTCCATTTTTGTACAATTATGCTGCTAGTGAAACACAGTTACATGATAAACCAAATGTAGCACTTTTCTTCTTAGAAAAGGATTTACATCAAGGAACAAAGTTGAACTTGCAATTCGCAAAAACAAACTCAAATGATGATGCAAAATTCTTGCCTAAAGAAGTTGCTAATTCAATACCTTTTTCTTCAAGCAAAGTTGAAAACATCCTTAACATGTTCTCAATCAAGGAAGGAACAGAAGAATCTGAAATTGTGAAGAACACAATAAGCGAGTGTGAAGAAAACGGCATCAAAGGAGAGGAAAAGCTTTGTGTAACATCTTTGGAATCAATGGTTGATTTCACTACTTCGAAACTTGGAAACAATGTTGAAGCTGTTTCAACAGAAGTGAAAAAAGAAAGCAGTGACTTGCAAGAATATGTAATGGCAAAAGGTGTGAAGAAATTGGGAGAGAAGAATAAAGCTGTAGTGTGTCACAAAGAGAATTACCCTTACGCAGTTTTTTACTGTCACAAAACAGATTCAACTAAAGTTTACTCTGTGCCTTTGGAAGGTGTTGATGGAAGCCGAGTTAAAGCTGTTGCTGTGTGTCACACTGATACTTCACAATGGAACCCTAAACATTTGGCTTTTCAAGTGCTCAAAGTTCAACCTGGGACTGTTCCAGTTTGTCACTTCCTTCCACAGGATCATGTTGTTTGGGTTTCCAAGTAA

Protein sequence

>Msa0008330

MEFRHLSIFIILNLALVATNAALPPELYWKSKLSTTQMPKAITDLLHLGKGGVNVDSGKTKPGGTSVNVGKGGVHVDAGKTKPGGTAVNVGKGGVHVNAGKGKPGGGTAVNVGKGGVNVHAGKGRGKPVHVSVGNKSPFLYNYAASETQLHDKPNVALFFLEKDLHQGTKLNLQFAKTNSNDDAKFLPKEVANSIPFSSSKVENILNMFSIKEGTEESEIVKNTISECEENGIKGEEKLCVTSLESMVDFTTSKLGNNVEAVSTEVKKESSDLQEYVMAKGVKKLGEKNKAVVCHKENYPYAVFYCHKTDSTKVYSVPLEGVDGSRVKAVAVCHTDTSQWNPKHLAFQVLKVQPGTVPVCHFLPQDHVVWVSK*