AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0087110


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0087110 MtrunA17_Chr1g0202931 94.921 315 16 0 1 315 1 315 0.0 622
Msa0087110 MtrunA17_Chr1g0202891 89.841 315 32 0 1 315 1 315 0.0 582
Msa0087110 MtrunA17_Chr1g0202871 82.540 315 55 0 1 315 1 315 0.0 541
Msa0087110 MtrunA17_Chr1g0202861 79.048 315 66 0 1 315 42 356 0.0 530
Msa0087110 MtrunA17_Chr8g0386971 70.740 311 91 0 1 311 1 311 1.87e-165 462
Msa0087110 MtrunA17_Chr6g0470321 71.987 307 83 2 10 313 18 324 4.26e-158 444
Msa0087110 MtrunA17_Chr6g0470501 71.010 307 86 2 10 313 37 343 1.01e-157 444
Msa0087110 MtrunA17_Chr1g0182541 59.344 305 124 0 8 312 13 317 2.88e-132 379
Msa0087110 MtrunA17_Chr7g0262941 59.477 306 123 1 8 312 13 318 6.16e-131 375
Msa0087110 MtrunA17_Chr4g0058731 46.278 309 162 2 8 312 24 332 9.96e-89 269
Msa0087110 MtrunA17_Chr8g0388831 45.338 311 166 3 8 314 13 323 2.12e-88 268
Msa0087110 MtrunA17_Chr3g0117241 50.704 142 67 1 8 146 13 154 1.03e-40 139
Msa0087110 MtrunA17_Chr3g0117251 42.515 167 95 1 147 312 1 167 2.96e-40 139
Msa0087110 MtrunA17_Chr6g0481311 36.078 255 147 6 30 275 62 309 4.62e-31 120
Msa0087110 MtrunA17_Chr2g0317921 30.351 313 183 10 31 312 88 396 2.63e-28 112
Msa0087110 MtrunA17_Chr1g0202911 63.514 74 27 0 33 106 4 77 1.30e-26 100
Msa0087110 MtrunA17_Chr6g0466681 28.413 271 174 6 25 291 62 316 5.45e-25 102
Msa0087110 MtrunA17_Chr6g0469251 26.599 297 188 9 37 312 14 301 1.96e-15 75.5
Msa0087110 MtrunA17_Chr3g0079561 27.165 254 155 9 80 312 13 257 3.72e-13 68.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0087110 AT4G11410.1 69.841 315 95 0 1 315 1 315 1.05e-164 461
Msa0087110 AT4G23420.1 69.551 312 94 1 1 311 1 312 1.22e-163 458
Msa0087110 AT4G23420.2 69.551 312 94 1 1 311 1 312 1.22e-163 458
Msa0087110 AT4G23430.2 67.405 316 102 1 1 315 1 316 8.00e-163 456
Msa0087110 AT4G23420.3 68.710 310 96 1 3 311 20 329 3.22e-160 450
Msa0087110 AT4G23430.1 67.089 316 101 2 1 315 1 314 1.02e-159 448
Msa0087110 AT4G23430.4 64.557 316 101 2 1 315 1 306 8.27e-153 431
Msa0087110 AT4G23430.3 64.241 316 100 3 1 315 1 304 1.10e-149 422
Msa0087110 AT4G23420.5 69.847 262 78 1 1 261 1 262 4.81e-135 384
Msa0087110 AT4G23420.4 75.105 237 59 0 1 237 1 237 4.09e-133 379
Msa0087110 AT2G37540.1 56.678 307 133 0 6 312 10 316 3.26e-128 369
Msa0087110 AT4G11410.2 72.245 245 68 0 1 245 1 245 1.18e-127 365
Msa0087110 AT5G02540.1 58.958 307 126 0 6 312 10 316 1.17e-125 362
Msa0087110 AT2G37540.2 59.916 237 95 0 6 242 10 246 7.07e-103 302
Msa0087110 AT4G24050.1 45.484 310 166 2 8 314 13 322 8.92e-90 271
Msa0087110 AT5G50130.1 47.910 311 158 3 8 314 13 323 1.27e-89 271
Msa0087110 AT5G50130.8 47.350 283 148 1 33 314 7 289 1.39e-82 252
Msa0087110 AT5G50130.7 47.535 284 147 2 33 314 7 290 3.23e-82 251
Msa0087110 AT1G64590.1 45.763 295 157 2 17 308 22 316 2.19e-78 242
Msa0087110 AT5G50130.2 47.547 265 135 3 8 268 13 277 7.76e-75 233
Msa0087110 AT5G50130.4 47.744 266 134 4 8 268 13 278 2.77e-74 231
Msa0087110 AT4G24050.2 45.833 264 138 3 8 268 13 274 1.13e-73 228
Msa0087110 AT5G50130.9 49.796 245 120 2 8 249 13 257 1.36e-73 228
Msa0087110 AT5G50130.3 50.000 246 119 3 8 249 13 258 4.42e-73 226
Msa0087110 AT5G50130.6 47.059 238 124 2 33 268 7 244 1.64e-67 213
Msa0087110 AT5G50130.5 47.280 239 123 3 33 268 7 245 5.60e-67 212
Msa0087110 AT5G54190.1 29.582 311 184 10 33 312 96 402 4.26e-31 120
Msa0087110 AT4G27760.1 30.164 305 180 7 30 312 58 351 5.19e-31 120
Msa0087110 AT1G03630.1 33.013 312 175 11 31 312 91 398 5.41e-31 120
Msa0087110 AT1G03630.2 33.013 312 175 11 31 312 89 396 5.70e-31 120
Msa0087110 AT5G53090.1 31.561 301 181 6 30 312 57 350 2.84e-29 115
Msa0087110 AT4G27440.2 29.942 344 202 12 4 312 59 398 1.90e-27 110
Msa0087110 AT4G27440.1 29.942 344 202 12 4 312 59 398 1.90e-27 110
Msa0087110 AT4G09750.1 29.588 267 168 6 29 291 43 293 5.39e-27 108
Msa0087110 AT5G53100.1 30.592 304 183 8 30 312 45 341 6.90e-27 108
Msa0087110 AT5G54190.2 27.622 286 171 10 58 312 1 281 1.31e-23 98.6
Msa0087110 AT5G04070.1 28.477 302 188 8 32 314 61 353 1.51e-22 96.7
Msa0087110 AT5G15940.1 28.197 305 187 11 32 314 62 356 8.26e-22 94.7
Msa0087110 AT5G15940.3 28.197 305 187 11 32 314 63 357 8.43e-22 94.7
Msa0087110 AT5G15940.2 28.197 305 187 11 32 314 63 357 8.43e-22 94.7
Msa0087110 AT5G15940.4 29.075 227 136 7 32 241 63 281 1.18e-16 79.7
Msa0087110 AT3G59710.3 29.710 276 149 11 31 272 20 284 1.41e-12 67.4
Msa0087110 AT3G59710.1 29.496 278 151 11 31 274 30 296 2.09e-12 67.0
Msa0087110 AT3G59710.2 29.710 276 149 11 31 272 49 313 2.28e-12 67.0
Msa0087110 AT5G61830.1 24.490 294 160 9 32 285 39 310 9.61e-12 65.1
Msa0087110 AT5G61830.2 24.490 294 160 9 32 285 39 310 9.61e-12 65.1

Find 136 sgRNAs with CRISPR-Local

Find 313 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCATTCCTTAATTTACTTTC+TGG 0.188746 1_2:-67919970 None:intergenic
TTCAGGAAGAAAGGGATTTC+TGG 0.209019 1_2:+67920446 Msa0087110:CDS
CATTGGAATGCGTTCTTATC+AGG 0.221106 1_2:+67920150 Msa0087110:five_prime_UTR
AGCATAGTGGTTCTTATAAA+AGG 0.221115 1_2:+67919834 Msa0087110:five_prime_UTR
CCTTCCCTGTGATTCTCTTT+TGG 0.235273 1_2:-67924142 None:intergenic
TTTCAGCATGAATTTGATTA+AGG 0.259296 1_2:+67924194 Msa0087110:CDS
TCAATTTCTTGTTCTTCTTT+TGG 0.274467 1_2:-67919278 None:intergenic
GGCTTACACATTTGCATATT+CGG 0.280798 1_2:+67922379 Msa0087110:CDS
ACAGGAACAAAAGCTCTTAT+TGG 0.282027 1_2:-67919740 None:intergenic
TCAAGCCAGAAAGTAAATTA+AGG 0.283081 1_2:+67919965 Msa0087110:five_prime_UTR
CTGTAGTTCAATGTTGTCTT+TGG 0.287889 1_2:-67921734 None:intergenic
TTACCATCATGTGGCCATTC+AGG 0.289613 1_2:+67920429 Msa0087110:exon
CACTAATTCCCTTCACTTGT+GGG 0.304068 1_2:-67924092 None:intergenic
GCGTGGTGTCCATGTGATTA+TGG 0.305515 1_2:+67920921 Msa0087110:CDS
GTTTATGTATGATTTGTATA+AGG 0.310391 1_2:+67920013 Msa0087110:five_prime_UTR
TGAAATGAAGGACAAATAAA+TGG 0.317212 1_2:-67919094 None:intergenic
AGCACTTGCTGTGGCTAATA+TGG 0.317291 1_2:+67919871 Msa0087110:five_prime_UTR
CTATTGGTTATTACCTTGAT+TGG 0.330943 1_2:-67922430 None:intergenic
CACCAATCTTTCCCGCCATA+TGG 0.337645 1_2:+67923135 Msa0087110:CDS
CTGATTTGGCTAAGAAACTT+TGG 0.344972 1_2:+67924169 Msa0087110:CDS
AGTACAAATCCAAAATCTTC+AGG 0.345941 1_2:-67919446 None:intergenic
GATTATGGCTGTTAGAAATA+TGG 0.346372 1_2:+67920936 Msa0087110:CDS
ACAAATAAATGGTTGGTAAA+GGG 0.348490 1_2:-67919083 None:intergenic
ACAGGGAAGGGACGCTGATT+TGG 0.349751 1_2:+67924155 Msa0087110:CDS
AAAGGGATTTCTGGATTCTC+AGG 0.351168 1_2:+67920455 Msa0087110:CDS
TTCCTGTTCTTTATAATTCA+AGG 0.354426 1_2:+67919756 Msa0087110:five_prime_UTR
GAAATACACAAATTTGTATA+TGG 0.356715 1_2:+67920103 Msa0087110:five_prime_UTR
AGGAATGATTAGGTAGCTAT+AGG 0.364885 1_2:+67919985 Msa0087110:five_prime_UTR
GGAAGAATTGTTAATGTCTC+TGG 0.379542 1_2:+67922353 Msa0087110:CDS
ATGGTTAGCCCTGAAGATTT+TGG 0.385009 1_2:+67919437 Msa0087110:five_prime_UTR
ACCCATATGGCGGGAAAGAT+TGG 0.391956 1_2:-67923137 None:intergenic
TGATTTGGCTAAGAAACTTT+GGG 0.394235 1_2:+67924170 Msa0087110:CDS
CAGCTAAACAATTGAGTTGT+CGG 0.396906 1_2:-67919388 None:intergenic
CTCCTTGAATTATAAAGAAC+AGG 0.405168 1_2:-67919758 None:intergenic
ACAGGAGCAACCAGTGGTAT+TGG 0.407904 1_2:+67920871 Msa0087110:intron
CCACTAATTCCCTTCACTTG+TGG 0.410260 1_2:-67924093 None:intergenic
TACAACAAACAGAGTGCATA+TGG 0.418172 1_2:+67922921 Msa0087110:CDS
TATTTGAATGATGACATCAT+TGG 0.424697 1_2:+67920232 Msa0087110:five_prime_UTR
TGGAATATTTGAAGGTGATA+AGG 0.427078 1_2:+67919628 Msa0087110:five_prime_UTR
ACAGGTATAATACAGGTGAT+TGG 0.428022 1_2:+67923828 Msa0087110:intron
CAGGTATAATACAGGTGATT+GGG 0.437343 1_2:+67923829 Msa0087110:intron
AAGTAAATTAAGGAATGATT+AGG 0.437346 1_2:+67919975 Msa0087110:five_prime_UTR
GACAAATAAATGGTTGGTAA+AGG 0.437627 1_2:-67919084 None:intergenic
TCTGGTGGAGTTGGACCAAC+TGG 0.442420 1_2:+67919239 Msa0087110:five_prime_UTR
ACAAAATTAATGACCAATCA+AGG 0.448930 1_2:+67922417 Msa0087110:CDS
TTACATCTTGATCAGGATGA+TGG 0.449048 1_2:+67923070 Msa0087110:intron
AAAACTCTAGGAAGATAAAC+AGG 0.453140 1_2:-67919929 None:intergenic
GAAATCCCTTTCTTCCTGAA+TGG 0.455018 1_2:-67920443 None:intergenic
GGAATGATTAGGTAGCTATA+GGG 0.457187 1_2:+67919986 Msa0087110:five_prime_UTR
TATCAAAGCAGCAATACTTA+AGG 0.461173 1_2:+67920972 Msa0087110:CDS
CCACATACCTAAGTGGTTTG+TGG 0.461540 1_2:-67921761 None:intergenic
GAGGCGTCTTGCAAGCTCAT+TGG 0.461840 1_2:-67922973 None:intergenic
AAGACCAGAGGAGTTGAATT+CGG 0.463073 1_2:-67921067 None:intergenic
CCATGTAAAATATATGCTAT+AGG 0.465903 1_2:-67919608 None:intergenic
TGGTAAAGGGGTAAGGTTCG+TGG 0.466371 1_2:-67919070 None:intergenic
CAAATAAATGGTTGGTAAAG+GGG 0.476372 1_2:-67919082 None:intergenic
TGATCAAGATATTTGTGAAA+GGG 0.477355 1_2:-67919183 None:intergenic
AGATTGGTGAGAATGATTCC+TGG 0.477751 1_2:-67923121 None:intergenic
CCACAAGTGAAGGGAATTAG+TGG 0.477838 1_2:+67924093 Msa0087110:CDS
ACTCATGGAATTGATGCAAC+TGG 0.480827 1_2:+67920500 Msa0087110:CDS
GCATCCGAATTCAACTCCTC+TGG 0.483856 1_2:+67921063 Msa0087110:CDS
AGATGATGGGATTGAAATGA+AGG 0.487579 1_2:-67919106 None:intergenic
GGAGTTAGATCTCAGTTCAA+TGG 0.492329 1_2:+67921023 Msa0087110:CDS
ATGTGGCCATTCAGGAAGAA+AGG 0.492857 1_2:+67920437 Msa0087110:CDS
TTGTCTTTGGACAGCATGAA+AGG 0.496194 1_2:-67921721 None:intergenic
ACTATGCTCTTCACCAACCT+TGG 0.496587 1_2:-67919819 None:intergenic
GTACAAATCCAAAATCTTCA+GGG 0.500340 1_2:-67919445 None:intergenic
CAGTTTGCCACAAACCACTT+AGG 0.502711 1_2:+67921754 Msa0087110:CDS
AAATGGTTGGTAAAGGGGTA+AGG 0.505905 1_2:-67919077 None:intergenic
TCTTATAAAAGGATTTATGC+TGG 0.505951 1_2:+67919845 Msa0087110:five_prime_UTR
GAGTTCCAAGCCTAGAGATT+CGG 0.506605 1_2:-67918986 None:intergenic
ACCAATCTTTCCCGCCATAT+GGG 0.511754 1_2:+67923136 Msa0087110:CDS
TTCAATTCTTATACAACACT+TGG 0.513169 1_2:-67924230 None:intergenic
GTGATCAAGATATTTGTGAA+AGG 0.517081 1_2:-67919184 None:intergenic
CAGCATGAATTTGATTAAGG+AGG 0.517327 1_2:+67924197 Msa0087110:CDS
TTGTGAAAGGGAACGTTGAG+AGG 0.519329 1_2:-67919171 None:intergenic
CTTCCTGAATGGCCACATGA+TGG 0.519739 1_2:-67920432 None:intergenic
GGCGCAAACCATTGGAGACG+TGG 0.520870 1_2:-67924384 None:intergenic
TGTGGCCAAAAGAGAATCAC+AGG 0.523542 1_2:+67924137 Msa0087110:CDS
GGTCTCACTGCTATTGTCAC+TGG 0.523841 1_2:+67920521 Msa0087110:CDS
TACCGTGGATTACACCCATA+TGG 0.529890 1_2:-67923150 None:intergenic
AATTGAGTTGTCGGAATGAG+AGG 0.532641 1_2:-67919379 None:intergenic
TACACATTTGCATATTCGGA+AGG 0.534970 1_2:+67922383 Msa0087110:CDS
TGACACCGAATCTCTAGGCT+TGG 0.535666 1_2:+67918981 None:intergenic
GGTTAGATTAGATCAGATGA+TGG 0.538184 1_2:-67919120 None:intergenic
CTCAGCTAAAATTGACGTCA+TGG 0.538413 1_2:+67921002 Msa0087110:CDS
TGTGGCCATTCAGGAAGAAA+GGG 0.539455 1_2:+67920438 Msa0087110:CDS
TTCAGGGCTAACCATGCCAC+TGG 0.540431 1_2:-67919429 None:intergenic
ATGAAGGACAAATAAATGGT+TGG 0.540961 1_2:-67919090 None:intergenic
TTATGCAACAGGTATAATAC+AGG 0.545042 1_2:+67923821 Msa0087110:intron
CGCCATATGGGTGTAATCCA+CGG 0.545789 1_2:+67923148 Msa0087110:CDS
AGAGATGAGATTTCCAAGGT+TGG 0.547974 1_2:+67919806 Msa0087110:five_prime_UTR
AAAGTCAATAGTGCAGATCA+TGG 0.548372 1_2:-67920374 None:intergenic
AGCATTGCACCCACAAGTGA+AGG 0.549189 1_2:+67924083 Msa0087110:CDS
ACTGCTGAACAAGTTACTCA+TGG 0.551436 1_2:+67920485 Msa0087110:CDS
TGTCTTTGGACAGCATGAAA+GGG 0.554321 1_2:-67921720 None:intergenic
TAGTGTGACACCGAATCTCT+AGG 0.554617 1_2:+67918976 None:intergenic
GCACACGAAAGTAAGAAAGA+AGG 0.557161 1_2:+67922332 Msa0087110:CDS
GTTAGATTAGATCAGATGAT+GGG 0.558505 1_2:-67919119 None:intergenic
GTAATTGCAAGAAACAATGC+AGG 0.558972 1_2:+67921685 Msa0087110:intron
TACATCTTGATCAGGATGAT+GGG 0.560641 1_2:+67923071 Msa0087110:intron
ACTGTGAATTCTCTTCATCC+AGG 0.561741 1_2:+67923103 Msa0087110:CDS
TGAGCTTGCAAGACGCCTCA+AGG 0.563477 1_2:+67922977 Msa0087110:CDS
CAATGCTACATAGCAGGTTG+TGG 0.563645 1_2:-67924067 None:intergenic
ATATTGCCCACATACCTAAG+TGG 0.571755 1_2:-67921768 None:intergenic
GTGGATTACACCCATATGGC+GGG 0.577534 1_2:-67923146 None:intergenic
CAAAAGAGAATCACAGGGAA+GGG 0.585563 1_2:+67924143 Msa0087110:CDS
AAGGGATTTCTGGATTCTCA+GGG 0.585889 1_2:+67920456 Msa0087110:CDS
AATATGCATACGTTGTACAT+TGG 0.586433 1_2:+67920133 Msa0087110:five_prime_UTR
GTTGAGAGGAGAATTAAGAG+AGG 0.586643 1_2:-67919157 None:intergenic
GTTTAGAGATGAGATTTCCA+AGG 0.593748 1_2:+67919802 Msa0087110:five_prime_UTR
AATAACCAGCAGAAAAGTCA+TGG 0.596108 1_2:-67920043 None:intergenic
TCTTACATCAAGATGTTCAA+CGG 0.596176 1_2:-67921090 None:intergenic
TGGGTGCAATGCTACATAGC+AGG 0.602362 1_2:-67924073 None:intergenic
AGTCTCAACTCCAATACCAC+TGG 0.604354 1_2:-67920881 None:intergenic
GCGCAAACCATTGGAGACGT+GGG 0.606770 1_2:-67924383 None:intergenic
AATTGTTAATGTCTCTGGAG+AGG 0.607553 1_2:+67922358 Msa0087110:CDS
AGGCTAATGTCACAGCCAGT+TGG 0.608232 1_2:-67919254 None:intergenic
ATTGACTTTGTGAATTGTGA+CGG 0.611694 1_2:+67920388 Msa0087110:five_prime_UTR
TGCTGGAAGAGCACTTGCTG+TGG 0.614632 1_2:+67919862 Msa0087110:five_prime_UTR
CCAAAAGAGAATCACAGGGA+AGG 0.615970 1_2:+67924142 Msa0087110:CDS
ATATTTGAAGGTGATAAGGA+AGG 0.616957 1_2:+67919632 Msa0087110:five_prime_UTR
ACGCGTGTTCTTGCTTTGCG+TGG 0.623338 1_2:+67920904 Msa0087110:CDS
GCATTGCACCCACAAGTGAA+GGG 0.624705 1_2:+67924084 Msa0087110:CDS
TCTTGATCAGGATGATGGGG+TGG 0.624894 1_2:+67923075 Msa0087110:intron
TAATTAAATAAATTTGACAG+TGG 0.625022 1_2:+67920081 Msa0087110:five_prime_UTR
CGTGGATTACACCCATATGG+CGG 0.632054 1_2:-67923147 None:intergenic
TTCTAACAGCCATAATCACA+TGG 0.652025 1_2:-67920930 None:intergenic
GATGTTCAACGGAAGACCAG+AGG 0.668187 1_2:-67921079 None:intergenic
AAGGTTGGTGAAGAGCATAG+TGG 0.672560 1_2:+67919821 Msa0087110:five_prime_UTR
CTGTTCTTTATAATTCAAGG+AGG 0.674362 1_2:+67919759 Msa0087110:five_prime_UTR
ACATCTTGATCAGGATGATG+GGG 0.677424 1_2:+67923072 Msa0087110:intron
AACATAGTGACATAATAACA+TGG 0.690821 1_2:+67920199 Msa0087110:five_prime_UTR
ATGGTAACAGGAGCAACCAG+TGG 0.692173 1_2:+67920865 Msa0087110:intron
TATGTTGAAGATGAGATGTG+TGG 0.706621 1_2:-67920182 None:intergenic
GTGGCCAAAAGAGAATCACA+GGG 0.746378 1_2:+67924138 Msa0087110:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAGATATTATAACAATTA+TGG - chr1_2:67921257-67921276 None:intergenic 10.0%
!! TCAAATAAATAGTAAATAAA+AGG - chr1_2:67921533-67921552 None:intergenic 10.0%
!! TAAAAATAATTGTAAAATGA+TGG - chr1_2:67921954-67921973 None:intergenic 10.0%
!!! TTTTGTATTTTGTTTTTAAA+TGG + chr1_2:67922490-67922509 Msa0087110:intron 10.0%
!!! CTATGAAAACATAAATTTTA+AGG - chr1_2:67919565-67919584 None:intergenic 15.0%
!!! CTTAAAATTTATGTTTTCAT+AGG + chr1_2:67919563-67919582 Msa0087110:five_prime_UTR 15.0%
!! TAATTAAATAAATTTGACAG+TGG + chr1_2:67920081-67920100 Msa0087110:five_prime_UTR 15.0%
!!! ATTTTATATATGATTTAGGT+GGG - chr1_2:67920295-67920314 None:intergenic 15.0%
!!! AATTTTATATATGATTTAGG+TGG - chr1_2:67920296-67920315 None:intergenic 15.0%
!! ATAATCTTGAAGTTAAATTA+TGG - chr1_2:67920739-67920758 None:intergenic 15.0%
!! AAATTATTATATGGATATGA+TGG + chr1_2:67920841-67920860 Msa0087110:intron 15.0%
!! AAAACTTTAAATTAAGTTAG+AGG - chr1_2:67921174-67921193 None:intergenic 15.0%
!!! AATGCAATTTACTTTTTAAA+TGG - chr1_2:67921203-67921222 None:intergenic 15.0%
!! GAAACTTTAAATTAAGTTAA+CGG + chr1_2:67921490-67921509 Msa0087110:intron 15.0%
!!! TTTTTAAATTACAGTTACAA+AGG + chr1_2:67921968-67921987 Msa0087110:intron 15.0%
!!! TTTTAAATTACAGTTACAAA+GGG + chr1_2:67921969-67921988 Msa0087110:intron 15.0%
!!! AAACTTCAATTTTATTTTCT+TGG + chr1_2:67922563-67922582 Msa0087110:intron 15.0%
!!! AACTTCAATTTTATTTTCTT+GGG + chr1_2:67922564-67922583 Msa0087110:intron 15.0%
!! TACGAGTAAATAAATAATTA+CGG - chr1_2:67923366-67923385 None:intergenic 15.0%
!!! TTTATCTGATTATTTTGAAT+TGG + chr1_2:67923661-67923680 Msa0087110:intron 15.0%
!!! TTATCTGATTATTTTGAATT+GGG + chr1_2:67923662-67923681 Msa0087110:intron 15.0%
!! TTGTTATAAACGTTTATTAA+GGG + chr1_2:67923942-67923961 Msa0087110:intron 15.0%
!!! ATTTTACATGGAATATTTGA+AGG + chr1_2:67919620-67919639 Msa0087110:five_prime_UTR 20.0%
!! AAGTAAATTAAGGAATGATT+AGG + chr1_2:67919975-67919994 Msa0087110:five_prime_UTR 20.0%
!!! GTTTATGTATGATTTGTATA+AGG + chr1_2:67920013-67920032 Msa0087110:five_prime_UTR 20.0%
!! GAAATACACAAATTTGTATA+TGG + chr1_2:67920103-67920122 Msa0087110:five_prime_UTR 20.0%
!! TAAAACTACTATTCAACAAA+GGG - chr1_2:67920603-67920622 None:intergenic 20.0%
!! ATAAAACTACTATTCAACAA+AGG - chr1_2:67920604-67920623 None:intergenic 20.0%
!! CTACATATATTCATACATAA+AGG - chr1_2:67920653-67920672 None:intergenic 20.0%
!! GGCTATGAAAAATTATTATA+TGG + chr1_2:67920832-67920851 Msa0087110:intron 20.0%
!! GAATCAAATGAATAAAAACT+CGG - chr1_2:67921817-67921836 None:intergenic 20.0%
!! TCTAATAAAATGAAGAGAAA+AGG + chr1_2:67921877-67921896 Msa0087110:intron 20.0%
!!! ATTTTGTTTTTAAATGGAAG+AGG + chr1_2:67922496-67922515 Msa0087110:intron 20.0%
!!! ATTTTATTTTCTTGGGAAAT+CGG + chr1_2:67922571-67922590 Msa0087110:intron 20.0%
!! ATAGTACTCAATATGTATTT+CGG + chr1_2:67922624-67922643 Msa0087110:intron 20.0%
!! TAAATAATTACGGGTATAAT+AGG - chr1_2:67923356-67923375 None:intergenic 20.0%
!! ACGAGTAAATAAATAATTAC+GGG - chr1_2:67923365-67923384 None:intergenic 20.0%
!!! TAGAAAACAAACACATTTTA+TGG - chr1_2:67923746-67923765 None:intergenic 20.0%
!! GTTGTTATAAACGTTTATTA+AGG + chr1_2:67923941-67923960 Msa0087110:intron 20.0%
! GTCCTAACTAAAAATAACAT+AGG + chr1_2:67919034-67919053 Msa0087110:five_prime_UTR 25.0%
!!! CACCTATGTTATTTTTAGTT+AGG - chr1_2:67919039-67919058 None:intergenic 25.0%
!!! ACAAATAAATGGTTGGTAAA+GGG - chr1_2:67919086-67919105 None:intergenic 25.0%
! TGAAATGAAGGACAAATAAA+TGG - chr1_2:67919097-67919116 None:intergenic 25.0%
! TGATCAAGATATTTGTGAAA+GGG - chr1_2:67919186-67919205 None:intergenic 25.0%
!! TCAATTTCTTGTTCTTCTTT+TGG - chr1_2:67919281-67919300 None:intergenic 25.0%
!! AAATTGGTTGTTCTTTTGAA+GGG - chr1_2:67919523-67919542 None:intergenic 25.0%
!! AAAATTGGTTGTTCTTTTGA+AGG - chr1_2:67919524-67919543 None:intergenic 25.0%
!!! TTGTTTTGTTGAGTGAAAAT+TGG - chr1_2:67919539-67919558 None:intergenic 25.0%
! CCATGTAAAATATATGCTAT+AGG - chr1_2:67919611-67919630 None:intergenic 25.0%
!! CCTATAGCATATATTTTACA+TGG + chr1_2:67919608-67919627 Msa0087110:five_prime_UTR 25.0%
! TTCCTGTTCTTTATAATTCA+AGG + chr1_2:67919756-67919775 Msa0087110:five_prime_UTR 25.0%
! TCTTATAAAAGGATTTATGC+TGG + chr1_2:67919845-67919864 Msa0087110:five_prime_UTR 25.0%
!!! TTTTGGTGCTTTAATTTGTT+TGG + chr1_2:67919896-67919915 Msa0087110:five_prime_UTR 25.0%
!!! TAATACGCTTTAAAAACTCT+AGG - chr1_2:67919944-67919963 None:intergenic 25.0%
! TCATTCCTTAATTTACTTTC+TGG - chr1_2:67919973-67919992 None:intergenic 25.0%
! AACATAGTGACATAATAACA+TGG + chr1_2:67920199-67920218 Msa0087110:five_prime_UTR 25.0%
! TATTTGAATGATGACATCAT+TGG + chr1_2:67920232-67920251 Msa0087110:five_prime_UTR 25.0%
!! TTTTTAACGATCTTTGTAGT+TGG + chr1_2:67920711-67920730 Msa0087110:intron 25.0%
! AGTTAGTTGAGTAAAGATAA+AGG + chr1_2:67921429-67921448 Msa0087110:intron 25.0%
! GTTAGTTGAGTAAAGATAAA+GGG + chr1_2:67921430-67921449 Msa0087110:intron 25.0%
! GTAAAATGATGGTATTTCAT+TGG - chr1_2:67921943-67921962 None:intergenic 25.0%
!!! GAAACATTACGAGTTTTAAT+TGG + chr1_2:67922002-67922021 Msa0087110:intron 25.0%
!!! TACGAGTTTTAATTGGAATT+TGG + chr1_2:67922009-67922028 Msa0087110:intron 25.0%
! GAATTCATCTTAGAGTTTAA+TGG - chr1_2:67922073-67922092 None:intergenic 25.0%
!! GGTCATTAATTTTGTCAAAA+CGG - chr1_2:67922412-67922431 None:intergenic 25.0%
! ACAAAATTAATGACCAATCA+AGG + chr1_2:67922417-67922436 Msa0087110:CDS 25.0%
!! TTGGTATCAAAACTTTTATC+TGG - chr1_2:67922675-67922694 None:intergenic 25.0%
!! ATATCATATTAGCAGGTTTT+TGG - chr1_2:67922694-67922713 None:intergenic 25.0%
! CTAATATGATATTGATCACA+TGG + chr1_2:67922702-67922721 Msa0087110:intron 25.0%
!! TTTGTTGTAACTGTATTACA+AGG - chr1_2:67922910-67922929 None:intergenic 25.0%
!!! TTTGTTTTTGTGTGTAAAAC+TGG + chr1_2:67923014-67923033 Msa0087110:intron 25.0%
! TCATTCATCTACATTACTAT+AGG + chr1_2:67923318-67923337 Msa0087110:intron 25.0%
! ACTACAGCATAAAAAAACAT+AGG - chr1_2:67923495-67923514 None:intergenic 25.0%
! AGTAATAATGTATGAATGAG+TGG - chr1_2:67923632-67923651 None:intergenic 25.0%
!! TTATGTTTGATTTATGCAAC+AGG + chr1_2:67923810-67923829 Msa0087110:intron 25.0%
! ACCTATGATTTATAAATGTG+AGG + chr1_2:67923898-67923917 Msa0087110:intron 25.0%
! CCTATGATTTATAAATGTGA+GGG + chr1_2:67923899-67923918 Msa0087110:intron 25.0%
! TCTAATCTGTGTTTCTTTAT+TGG - chr1_2:67923969-67923988 None:intergenic 25.0%
! TTTCAGCATGAATTTGATTA+AGG + chr1_2:67924194-67924213 Msa0087110:CDS 25.0%
! TTCAATTCTTATACAACACT+TGG - chr1_2:67924233-67924252 None:intergenic 25.0%
!! CAAATAAATGGTTGGTAAAG+GGG - chr1_2:67919085-67919104 None:intergenic 30.0%
!! GACAAATAAATGGTTGGTAA+AGG - chr1_2:67919087-67919106 None:intergenic 30.0%
ATGAAGGACAAATAAATGGT+TGG - chr1_2:67919093-67919112 None:intergenic 30.0%
GTTAGATTAGATCAGATGAT+GGG - chr1_2:67919122-67919141 None:intergenic 30.0%
GTGATCAAGATATTTGTGAA+AGG - chr1_2:67919187-67919206 None:intergenic 30.0%
! TTTCTTGTTCTTCTTTTGGT+AGG - chr1_2:67919277-67919296 None:intergenic 30.0%
GTACAAATCCAAAATCTTCA+GGG - chr1_2:67919448-67919467 None:intergenic 30.0%
AGTACAAATCCAAAATCTTC+AGG - chr1_2:67919449-67919468 None:intergenic 30.0%
TGGAATATTTGAAGGTGATA+AGG + chr1_2:67919628-67919647 Msa0087110:five_prime_UTR 30.0%
ATATTTGAAGGTGATAAGGA+AGG + chr1_2:67919632-67919651 Msa0087110:five_prime_UTR 30.0%
! TACACCACATGTTTTTCTTT+TGG + chr1_2:67919667-67919686 Msa0087110:five_prime_UTR 30.0%
!! TTTGGCTAGTCAAGTTTTTA+TGG + chr1_2:67919685-67919704 Msa0087110:five_prime_UTR 30.0%
CTCCTTGAATTATAAAGAAC+AGG - chr1_2:67919761-67919780 None:intergenic 30.0%
CTGTTCTTTATAATTCAAGG+AGG + chr1_2:67919759-67919778 Msa0087110:five_prime_UTR 30.0%
AGCATAGTGGTTCTTATAAA+AGG + chr1_2:67919834-67919853 Msa0087110:five_prime_UTR 30.0%
! AAAACTCTAGGAAGATAAAC+AGG - chr1_2:67919932-67919951 None:intergenic 30.0%
TCAAGCCAGAAAGTAAATTA+AGG + chr1_2:67919965-67919984 Msa0087110:five_prime_UTR 30.0%
AATATGCATACGTTGTACAT+TGG + chr1_2:67920133-67920152 Msa0087110:five_prime_UTR 30.0%
! ATTGACTTTGTGAATTGTGA+CGG + chr1_2:67920388-67920407 Msa0087110:five_prime_UTR 30.0%
! GATTTTTCATTACCATCATG+TGG + chr1_2:67920420-67920439 Msa0087110:exon 30.0%
!! AGTTTTATGTTGCAGAGTTA+TGG + chr1_2:67920616-67920635 Msa0087110:intron 30.0%
! GTTTTATGTTGCAGAGTTAT+GGG + chr1_2:67920617-67920636 Msa0087110:intron 30.0%
! TTTTATGTTGCAGAGTTATG+GGG + chr1_2:67920618-67920637 Msa0087110:intron 30.0%
! CTTTTCATCATTTAGACTTG+AGG + chr1_2:67920673-67920692 Msa0087110:intron 30.0%
TTACATCAAATTCTTGCAAC+TGG + chr1_2:67920811-67920830 Msa0087110:intron 30.0%
ATTATATGGATATGATGGCA+TGG + chr1_2:67920846-67920865 Msa0087110:intron 30.0%
GATTATGGCTGTTAGAAATA+TGG + chr1_2:67920936-67920955 Msa0087110:CDS 30.0%
TATCAAAGCAGCAATACTTA+AGG + chr1_2:67920972-67920991 Msa0087110:CDS 30.0%
TCTTACATCAAGATGTTCAA+CGG - chr1_2:67921093-67921112 None:intergenic 30.0%
GAACATCTTGATGTAAGAAA+AGG + chr1_2:67921095-67921114 Msa0087110:intron 30.0%
! CAGTTTTGCCTAAATAAAGA+TGG - chr1_2:67921141-67921160 None:intergenic 30.0%
CATGATCAAGAAAGATAAAC+TGG - chr1_2:67921616-67921635 None:intergenic 30.0%
TTCTTGATCATGTTCATTCA+AGG + chr1_2:67921624-67921643 Msa0087110:intron 30.0%
!! GGGCAATATGTTTGATTTTA+CGG + chr1_2:67921782-67921801 Msa0087110:intron 30.0%
! TGAATAAAAACTCGGTTTGT+TGG - chr1_2:67921809-67921828 None:intergenic 30.0%
TAAAACTCGTAATGTTTCCA+TGG - chr1_2:67922000-67922019 None:intergenic 30.0%
! TCTAAGATGAATTCCTATGT+GGG + chr1_2:67922079-67922098 Msa0087110:intron 30.0%
AAACCAATATGTAATTGTGC+AGG + chr1_2:67922263-67922282 Msa0087110:intron 30.0%
! TCTCTTGACAAATCTTTTGT+TGG + chr1_2:67922292-67922311 Msa0087110:CDS 30.0%
! CTATTGGTTATTACCTTGAT+TGG - chr1_2:67922433-67922452 None:intergenic 30.0%
CAATCAAGGTAATAACCAAT+AGG + chr1_2:67922431-67922450 Msa0087110:intron 30.0%
TTTGAACATAGGTTACCTAT+TGG - chr1_2:67922449-67922468 None:intergenic 30.0%
ATACAAAATAACAGCACATC+TGG - chr1_2:67922478-67922497 None:intergenic 30.0%
GTGATCAATATCATATTAGC+AGG - chr1_2:67922701-67922720 None:intergenic 30.0%
!!! AATCGTTTTAACTGCAAACA+TGG - chr1_2:67922830-67922849 None:intergenic 30.0%
AAAAATTAAGAGCGGACATA+TGG + chr1_2:67922869-67922888 Msa0087110:intron 30.0%
! ATTTAGAATGCCATGTCATA+GGG - chr1_2:67923231-67923250 None:intergenic 30.0%
TAGTAAATTACCTTCATCCA+TGG - chr1_2:67923406-67923425 None:intergenic 30.0%
!!! TGTTTTTTTATGCTGTAGTG+TGG + chr1_2:67923496-67923515 Msa0087110:intron 30.0%
GTACAACAAGAAAATCATTC+AGG + chr1_2:67923570-67923589 Msa0087110:intron 30.0%
!!! TCTGATTATTTTGAATTGGG+TGG + chr1_2:67923665-67923684 Msa0087110:intron 30.0%
TTATGCAACAGGTATAATAC+AGG + chr1_2:67923821-67923840 Msa0087110:intron 30.0%
CCCTCACATTTATAAATCAT+AGG - chr1_2:67923902-67923921 None:intergenic 30.0%
ACTTTCTCCTATCTAAATGT+AGG + chr1_2:67924038-67924057 Msa0087110:intron 30.0%
CTTTCTCCTATCTAAATGTA+GGG + chr1_2:67924039-67924058 Msa0087110:intron 30.0%
TTTCTCCTATCTAAATGTAG+GGG + chr1_2:67924040-67924059 Msa0087110:intron 30.0%
!! GTATTTTTCAGACAACAATG+TGG + chr1_2:67924119-67924138 Msa0087110:CDS 30.0%
! TGATTTGGCTAAGAAACTTT+GGG + chr1_2:67924170-67924189 Msa0087110:CDS 30.0%
!!! AGCACTGCTCATTTTTTTTT+GGG - chr1_2:67924291-67924310 None:intergenic 30.0%
!!! TAGCACTGCTCATTTTTTTT+TGG - chr1_2:67924292-67924311 None:intergenic 30.0%
AAAAAATGAGCAGTGCTATA+TGG + chr1_2:67924294-67924313 Msa0087110:three_prime_UTR 30.0%
!! AGATGATGGGATTGAAATGA+AGG - chr1_2:67919109-67919128 None:intergenic 35.0%
GGTTAGATTAGATCAGATGA+TGG - chr1_2:67919123-67919142 None:intergenic 35.0%
AGAGAGGAAGTAGAAAGATA+AGG - chr1_2:67919144-67919163 None:intergenic 35.0%
!!! ACTAGTTTTTCTTTGTGCTG+TGG - chr1_2:67919357-67919376 None:intergenic 35.0%
! CAGCTAAACAATTGAGTTGT+CGG - chr1_2:67919391-67919410 None:intergenic 35.0%
! GTTTTCATAGGAGCAATCAT+TGG + chr1_2:67919575-67919594 Msa0087110:five_prime_UTR 35.0%
CTAGCCAAAAGAAAAACATG+TGG - chr1_2:67919674-67919693 None:intergenic 35.0%
! GCTAGTCAAGTTTTTATGGA+AGG + chr1_2:67919689-67919708 Msa0087110:five_prime_UTR 35.0%
!!! GAAGGTGTTGCATTTTCAAA+TGG + chr1_2:67919707-67919726 Msa0087110:five_prime_UTR 35.0%
ACAGGAACAAAAGCTCTTAT+TGG - chr1_2:67919743-67919762 None:intergenic 35.0%
! AAGGAGGATTTTCACTATTG+TGG + chr1_2:67919775-67919794 Msa0087110:five_prime_UTR 35.0%
! GGATTTTCACTATTGTGGAT+TGG + chr1_2:67919780-67919799 Msa0087110:five_prime_UTR 35.0%
GTTTAGAGATGAGATTTCCA+AGG + chr1_2:67919802-67919821 Msa0087110:five_prime_UTR 35.0%
AGGAATGATTAGGTAGCTAT+AGG + chr1_2:67919985-67920004 Msa0087110:five_prime_UTR 35.0%
GGAATGATTAGGTAGCTATA+GGG + chr1_2:67919986-67920005 Msa0087110:five_prime_UTR 35.0%
AATAACCAGCAGAAAAGTCA+TGG - chr1_2:67920046-67920065 None:intergenic 35.0%
TATGTTGAAGATGAGATGTG+TGG - chr1_2:67920185-67920204 None:intergenic 35.0%
AAAGTCAATAGTGCAGATCA+TGG - chr1_2:67920377-67920396 None:intergenic 35.0%
TTCTAACAGCCATAATCACA+TGG - chr1_2:67920933-67920952 None:intergenic 35.0%
!!! ATGACGTCAATTTTAGCTGA+GGG - chr1_2:67921003-67921022 None:intergenic 35.0%
! TCGCAGTACCATCTTTATTT+AGG + chr1_2:67921130-67921149 Msa0087110:intron 35.0%
! TAAATTAAGTTAACGGACCC+AGG + chr1_2:67921497-67921516 Msa0087110:intron 35.0%
CCAGAAAACATTACTACTAC+TGG - chr1_2:67921654-67921673 None:intergenic 35.0%
! CCAGTAGTAGTAATGTTTTC+TGG + chr1_2:67921651-67921670 Msa0087110:intron 35.0%
GTAATTGCAAGAAACAATGC+AGG + chr1_2:67921685-67921704 Msa0087110:intron 35.0%
CTGTAGTTCAATGTTGTCTT+TGG - chr1_2:67921737-67921756 None:intergenic 35.0%
!! CTCTAAGATGAATTCCTATG+TGG + chr1_2:67922078-67922097 Msa0087110:intron 35.0%
ACACATATCAGGGAAAGAAA+TGG + chr1_2:67922220-67922239 Msa0087110:intron 35.0%
TGACCTGCACAATTACATAT+TGG - chr1_2:67922269-67922288 None:intergenic 35.0%
GGAAGAATTGTTAATGTCTC+TGG + chr1_2:67922353-67922372 Msa0087110:CDS 35.0%
! AATTGTTAATGTCTCTGGAG+AGG + chr1_2:67922358-67922377 Msa0087110:CDS 35.0%
GGCTTACACATTTGCATATT+CGG + chr1_2:67922379-67922398 Msa0087110:CDS 35.0%
TACACATTTGCATATTCGGA+AGG + chr1_2:67922383-67922402 Msa0087110:CDS 35.0%
! TCTGGTGATGATTTGAACAT+AGG - chr1_2:67922460-67922479 None:intergenic 35.0%
TTAAAACGATTGTCTCACCA+TGG + chr1_2:67922839-67922858 Msa0087110:intron 35.0%
! CTTAATTTTTCATGCAGCCA+TGG - chr1_2:67922859-67922878 None:intergenic 35.0%
GCTGCATGAAAAATTAAGAG+CGG + chr1_2:67922861-67922880 Msa0087110:intron 35.0%
TACAACAAACAGAGTGCATA+TGG + chr1_2:67922921-67922940 Msa0087110:CDS 35.0%
! TCACTTGTTACATCTTGATC+AGG + chr1_2:67923063-67923082 Msa0087110:intron 35.0%
TTACATCTTGATCAGGATGA+TGG + chr1_2:67923070-67923089 Msa0087110:intron 35.0%
TACATCTTGATCAGGATGAT+GGG + chr1_2:67923071-67923090 Msa0087110:intron 35.0%
GTACAAGATAATAGTTACCG+TGG - chr1_2:67923168-67923187 None:intergenic 35.0%
ATCATTAAAGCCCTATGACA+TGG + chr1_2:67923218-67923237 Msa0087110:intron 35.0%
! CATTTAGAATGCCATGTCAT+AGG - chr1_2:67923232-67923251 None:intergenic 35.0%
ATAACAACGGTAGATAATGC+AGG - chr1_2:67923262-67923281 None:intergenic 35.0%
CATTGTAAAATCCACGATAG+TGG - chr1_2:67923288-67923307 None:intergenic 35.0%
TAATTCTCTTTCTCAGACCA+TGG + chr1_2:67923386-67923405 Msa0087110:intron 35.0%
CGTGAATTAAGAAACGTAGT+TGG - chr1_2:67923462-67923481 None:intergenic 35.0%
! TTTGAATTGGGTGGTTTTTC+TGG + chr1_2:67923674-67923693 Msa0087110:intron 35.0%
TGGTTTGATTGTTTGCACAT+TGG + chr1_2:67923694-67923713 Msa0087110:intron 35.0%
ACAGGTATAATACAGGTGAT+TGG + chr1_2:67923828-67923847 Msa0087110:intron 35.0%
CAGGTATAATACAGGTGATT+GGG + chr1_2:67923829-67923848 Msa0087110:intron 35.0%
TGTGATGAAAAATGTTCAGC+AGG + chr1_2:67923857-67923876 Msa0087110:CDS 35.0%
GGGTCGTGTCAAATAAATAT+TGG + chr1_2:67923919-67923938 Msa0087110:intron 35.0%
TTCTCCTATCTAAATGTAGG+GGG + chr1_2:67924041-67924060 Msa0087110:intron 35.0%
!! CTGATTTGGCTAAGAAACTT+TGG + chr1_2:67924169-67924188 Msa0087110:CDS 35.0%
CAGCATGAATTTGATTAAGG+AGG + chr1_2:67924197-67924216 Msa0087110:CDS 35.0%
!! AAATGGTTGGTAAAGGGGTA+AGG - chr1_2:67919080-67919099 None:intergenic 40.0%
GTTGAGAGGAGAATTAAGAG+AGG - chr1_2:67919160-67919179 None:intergenic 40.0%
GAGCTACACACAAAAATGTC+TGG + chr1_2:67919221-67919240 Msa0087110:five_prime_UTR 40.0%
CTACACACAAAAATGTCTGG+TGG + chr1_2:67919224-67919243 Msa0087110:five_prime_UTR 40.0%
ACAAAAATGTCTGGTGGAGT+TGG + chr1_2:67919230-67919249 Msa0087110:five_prime_UTR 40.0%
! AATTGAGTTGTCGGAATGAG+AGG - chr1_2:67919382-67919401 None:intergenic 40.0%
!!! GTTGTTGTTTTATCAGCCAG+TGG + chr1_2:67919413-67919432 Msa0087110:five_prime_UTR 40.0%
!! ATGGTTAGCCCTGAAGATTT+TGG + chr1_2:67919437-67919456 Msa0087110:five_prime_UTR 40.0%
!! TGTTCTTTTGAAGGGTGAGA+TGG - chr1_2:67919515-67919534 None:intergenic 40.0%
AGAGATGAGATTTCCAAGGT+TGG + chr1_2:67919806-67919825 Msa0087110:five_prime_UTR 40.0%
! CTGTGGCTAATATGGCTTTT+TGG + chr1_2:67919879-67919898 Msa0087110:five_prime_UTR 40.0%
! TTGAACCATGACTTTTCTGC+TGG + chr1_2:67920038-67920057 Msa0087110:five_prime_UTR 40.0%
CATTGGAATGCGTTCTTATC+AGG + chr1_2:67920150-67920169 Msa0087110:five_prime_UTR 40.0%
GAAATCCCTTTCTTCCTGAA+TGG - chr1_2:67920446-67920465 None:intergenic 40.0%
TTCAGGAAGAAAGGGATTTC+TGG + chr1_2:67920446-67920465 Msa0087110:CDS 40.0%
! AAAGGGATTTCTGGATTCTC+AGG + chr1_2:67920455-67920474 Msa0087110:CDS 40.0%
! AAGGGATTTCTGGATTCTCA+GGG + chr1_2:67920456-67920475 Msa0087110:CDS 40.0%
ACTGCTGAACAAGTTACTCA+TGG + chr1_2:67920485-67920504 Msa0087110:CDS 40.0%
ACTCATGGAATTGATGCAAC+TGG + chr1_2:67920500-67920519 Msa0087110:CDS 40.0%
CTACTATTCAACAAAGGGCA+TGG - chr1_2:67920598-67920617 None:intergenic 40.0%
CTGCTGAAATTTGCATAGTC+AGG + chr1_2:67920761-67920780 Msa0087110:intron 40.0%
!!! CATGACGTCAATTTTAGCTG+AGG - chr1_2:67921004-67921023 None:intergenic 40.0%
CTCAGCTAAAATTGACGTCA+TGG + chr1_2:67921002-67921021 Msa0087110:CDS 40.0%
GGAGTTAGATCTCAGTTCAA+TGG + chr1_2:67921023-67921042 Msa0087110:CDS 40.0%
AAGACCAGAGGAGTTGAATT+CGG - chr1_2:67921070-67921089 None:intergenic 40.0%
TGTAAGAAAAGGAACCGACA+TGG + chr1_2:67921106-67921125 Msa0087110:intron 40.0%
GATAAAGGGCTAACTTGACA+CGG + chr1_2:67921444-67921463 Msa0087110:intron 40.0%
AACTGGAACACAGATACTCA+TGG - chr1_2:67921599-67921618 None:intergenic 40.0%
TGTCTTTGGACAGCATGAAA+GGG - chr1_2:67921723-67921742 None:intergenic 40.0%
TTGTCTTTGGACAGCATGAA+AGG - chr1_2:67921724-67921743 None:intergenic 40.0%
CACAAACCACTTAGGTATGT+GGG + chr1_2:67921762-67921781 Msa0087110:intron 40.0%
ATATTGCCCACATACCTAAG+TGG - chr1_2:67921771-67921790 None:intergenic 40.0%
ACACACACACACACATATCA+GGG + chr1_2:67922210-67922229 Msa0087110:intron 40.0%
GCACACGAAAGTAAGAAAGA+AGG + chr1_2:67922332-67922351 Msa0087110:CDS 40.0%
! TGGGAAATCGGCTTTACTAT+TGG + chr1_2:67922583-67922602 Msa0087110:intron 40.0%
! CATCGTTATCAGCAGGTTTT+TGG - chr1_2:67922754-67922773 None:intergenic 40.0%
! CAAAAACCTGCTGATAACGA+TGG + chr1_2:67922752-67922771 Msa0087110:intron 40.0%
CTCATTTCAACGAGTACTAC+AGG - chr1_2:67922788-67922807 None:intergenic 40.0%
CTGTAGTACTCGTTGAAATG+AGG + chr1_2:67922786-67922805 Msa0087110:intron 40.0%
ACATCTTGATCAGGATGATG+GGG + chr1_2:67923072-67923091 Msa0087110:intron 40.0%
ACTGTGAATTCTCTTCATCC+AGG + chr1_2:67923103-67923122 Msa0087110:CDS 40.0%
AGATTGGTGAGAATGATTCC+TGG - chr1_2:67923124-67923143 None:intergenic 40.0%
! ACGATAGTGGCACATAACAA+CGG - chr1_2:67923275-67923294 None:intergenic 40.0%
GAATGAGTGGTGAAAGTTAG+TGG - chr1_2:67923619-67923638 None:intergenic 40.0%
CACTAATTCCCTTCACTTGT+GGG - chr1_2:67924095-67924114 None:intergenic 40.0%
CAAAAGAGAATCACAGGGAA+GGG + chr1_2:67924143-67924162 Msa0087110:CDS 40.0%
TTGTGAAAGGGAACGTTGAG+AGG - chr1_2:67919174-67919193 None:intergenic 45.0%
! TGTTTTATCAGCCAGTGGCA+TGG + chr1_2:67919418-67919437 Msa0087110:five_prime_UTR 45.0%
ACTATGCTCTTCACCAACCT+TGG - chr1_2:67919822-67919841 None:intergenic 45.0%
!! AAGGTTGGTGAAGAGCATAG+TGG + chr1_2:67919821-67919840 Msa0087110:five_prime_UTR 45.0%
!! AGCACTTGCTGTGGCTAATA+TGG + chr1_2:67919871-67919890 Msa0087110:five_prime_UTR 45.0%
TTACCATCATGTGGCCATTC+AGG + chr1_2:67920429-67920448 Msa0087110:exon 45.0%
ATGTGGCCATTCAGGAAGAA+AGG + chr1_2:67920437-67920456 Msa0087110:CDS 45.0%
TGTGGCCATTCAGGAAGAAA+GGG + chr1_2:67920438-67920457 Msa0087110:CDS 45.0%
GGATATGATGGCATGGTAAC+AGG + chr1_2:67920853-67920872 Msa0087110:intron 45.0%
AGTCTCAACTCCAATACCAC+TGG - chr1_2:67920884-67920903 None:intergenic 45.0%
! TGTGACCTCATTGTTGTTCG+AGG + chr1_2:67921318-67921337 Msa0087110:intron 45.0%
! GTGACCTCATTGTTGTTCGA+GGG + chr1_2:67921319-67921338 Msa0087110:intron 45.0%
TAGACCCTCGAACAACAATG+AGG - chr1_2:67921326-67921345 None:intergenic 45.0%
CAGTTTGCCACAAACCACTT+AGG + chr1_2:67921754-67921773 Msa0087110:CDS 45.0%
CCACATACCTAAGTGGTTTG+TGG - chr1_2:67921764-67921783 None:intergenic 45.0%
CCACAAACCACTTAGGTATG+TGG + chr1_2:67921761-67921780 Msa0087110:intron 45.0%
AGAGAAAAGGAGACATGCAC+TGG + chr1_2:67921890-67921909 Msa0087110:intron 45.0%
!! AGTTACAAAGGGTGCTTCCA+TGG + chr1_2:67921980-67921999 Msa0087110:intron 45.0%
GTGTGTGTGTGTAGTGAAGT+AGG - chr1_2:67922200-67922219 None:intergenic 45.0%
CACACACACACACACATATC+AGG + chr1_2:67922209-67922228 Msa0087110:intron 45.0%
AAAGAGACTAGCACACCTTG+AGG - chr1_2:67922995-67923014 None:intergenic 45.0%
ACCAATCTTTCCCGCCATAT+GGG + chr1_2:67923136-67923155 Msa0087110:CDS 45.0%
! TACCGTGGATTACACCCATA+TGG - chr1_2:67923153-67923172 None:intergenic 45.0%
! GTTGTTATGTGCCACTATCG+TGG + chr1_2:67923274-67923293 Msa0087110:intron 45.0%
CTTTCTCAGACCATGGATGA+AGG + chr1_2:67923393-67923412 Msa0087110:intron 45.0%
! GTGAAAGTTAGTGGACAGAC+TGG - chr1_2:67923610-67923629 None:intergenic 45.0%
CAATGCTACATAGCAGGTTG+TGG - chr1_2:67924070-67924089 None:intergenic 45.0%
CCACTAATTCCCTTCACTTG+TGG - chr1_2:67924096-67924115 None:intergenic 45.0%
CCACAAGTGAAGGGAATTAG+TGG + chr1_2:67924093-67924112 Msa0087110:CDS 45.0%
TGTGGCCAAAAGAGAATCAC+AGG + chr1_2:67924137-67924156 Msa0087110:CDS 45.0%
GTGGCCAAAAGAGAATCACA+GGG + chr1_2:67924138-67924157 Msa0087110:CDS 45.0%
! CCTTCCCTGTGATTCTCTTT+TGG - chr1_2:67924145-67924164 None:intergenic 45.0%
CCAAAAGAGAATCACAGGGA+AGG + chr1_2:67924142-67924161 Msa0087110:CDS 45.0%
!! GTTTTAACCCACGTCTCCAA+TGG + chr1_2:67924376-67924395 Msa0087110:three_prime_UTR 45.0%
!!! AATAATTTTATATATGATTT+AGG - chr1_2:67920299-67920318 None:intergenic 5.0%
!! AAATGAAAAAAATAAAAAAA+TGG - chr1_2:67920570-67920589 None:intergenic 5.0%
TGGTAAAGGGGTAAGGTTCG+TGG - chr1_2:67919073-67919092 None:intergenic 50.0%
AGGCTAATGTCACAGCCAGT+TGG - chr1_2:67919257-67919276 None:intergenic 50.0%
CTTCCTGAATGGCCACATGA+TGG - chr1_2:67920435-67920454 None:intergenic 50.0%
GGTCTCACTGCTATTGTCAC+TGG + chr1_2:67920521-67920540 Msa0087110:CDS 50.0%
ATGGTAACAGGAGCAACCAG+TGG + chr1_2:67920865-67920884 Msa0087110:intron 50.0%
ACAGGAGCAACCAGTGGTAT+TGG + chr1_2:67920871-67920890 Msa0087110:intron 50.0%
GCGTGGTGTCCATGTGATTA+TGG + chr1_2:67920921-67920940 Msa0087110:CDS 50.0%
GCATCCGAATTCAACTCCTC+TGG + chr1_2:67921063-67921082 Msa0087110:CDS 50.0%
GATGTTCAACGGAAGACCAG+AGG - chr1_2:67921082-67921101 None:intergenic 50.0%
GATGGTACTGCGATCCATGT+CGG - chr1_2:67921123-67921142 None:intergenic 50.0%
! TAAGTTAACGGACCCAGGTG+CGG + chr1_2:67921502-67921521 Msa0087110:intron 50.0%
TAAAAGGCGAATCCGCACCT+GGG - chr1_2:67921517-67921536 None:intergenic 50.0%
ATAAAAGGCGAATCCGCACC+TGG - chr1_2:67921518-67921537 None:intergenic 50.0%
CATCACAGTTGCTCCCACAT+AGG - chr1_2:67922095-67922114 None:intergenic 50.0%
!! TTTCGGTGTTCTGCGAGTCT+TGG + chr1_2:67922641-67922660 Msa0087110:intron 50.0%
ACGACTCCATCGTTATCAGC+AGG - chr1_2:67922761-67922780 None:intergenic 50.0%
!! TCTTGATCAGGATGATGGGG+TGG + chr1_2:67923075-67923094 Msa0087110:intron 50.0%
CACCAATCTTTCCCGCCATA+TGG + chr1_2:67923135-67923154 Msa0087110:CDS 50.0%
! ACCCATATGGCGGGAAAGAT+TGG - chr1_2:67923140-67923159 None:intergenic 50.0%
! GTGGATTACACCCATATGGC+GGG - chr1_2:67923149-67923168 None:intergenic 50.0%
! CGTGGATTACACCCATATGG+CGG - chr1_2:67923150-67923169 None:intergenic 50.0%
CGCCATATGGGTGTAATCCA+CGG + chr1_2:67923148-67923167 Msa0087110:CDS 50.0%
GCTGCCCCCTACATTTAGAT+AGG - chr1_2:67924048-67924067 None:intergenic 50.0%
TGGGTGCAATGCTACATAGC+AGG - chr1_2:67924076-67924095 None:intergenic 50.0%
AGCATTGCACCCACAAGTGA+AGG + chr1_2:67924083-67924102 Msa0087110:CDS 50.0%
GCATTGCACCCACAAGTGAA+GGG + chr1_2:67924084-67924103 Msa0087110:CDS 50.0%
TCTGGTGGAGTTGGACCAAC+TGG + chr1_2:67919239-67919258 Msa0087110:five_prime_UTR 55.0%
TTCAGGGCTAACCATGCCAC+TGG - chr1_2:67919432-67919451 None:intergenic 55.0%
!! TGCTGGAAGAGCACTTGCTG+TGG + chr1_2:67919862-67919881 Msa0087110:five_prime_UTR 55.0%
ACGCGTGTTCTTGCTTTGCG+TGG + chr1_2:67920904-67920923 Msa0087110:CDS 55.0%
! GAGGCGTCTTGCAAGCTCAT+TGG - chr1_2:67922976-67922995 None:intergenic 55.0%
TGAGCTTGCAAGACGCCTCA+AGG + chr1_2:67922977-67922996 Msa0087110:CDS 55.0%
! ACAGGGAAGGGACGCTGATT+TGG + chr1_2:67924155-67924174 Msa0087110:CDS 55.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 67918987 67924404 67918987 ID=Msa0087110;Name=Msa0087110
chr1_2 mRNA 67918987 67924404 67918987 ID=Msa0087110-mRNA-1;Parent=Msa0087110;Name=Msa0087110-mRNA-1;_AED=0.34;_eAED=0.34;_QI=1430|1|1|1|0.87|0.77|9|180|315
chr1_2 exon 67918987 67919136 67918987 ID=Msa0087110-mRNA-1:exon:23113;Parent=Msa0087110-mRNA-1
chr1_2 exon 67919157 67920542 67919157 ID=Msa0087110-mRNA-1:exon:23114;Parent=Msa0087110-mRNA-1
chr1_2 exon 67920875 67921106 67920875 ID=Msa0087110-mRNA-1:exon:23115;Parent=Msa0087110-mRNA-1
chr1_2 exon 67921696 67921775 67921696 ID=Msa0087110-mRNA-1:exon:23116;Parent=Msa0087110-mRNA-1
chr1_2 exon 67922285 67922438 67922285 ID=Msa0087110-mRNA-1:exon:23117;Parent=Msa0087110-mRNA-1
chr1_2 exon 67922920 67922998 67922920 ID=Msa0087110-mRNA-1:exon:23118;Parent=Msa0087110-mRNA-1
chr1_2 exon 67923085 67923169 67923085 ID=Msa0087110-mRNA-1:exon:23119;Parent=Msa0087110-mRNA-1
chr1_2 exon 67923832 67923878 67923832 ID=Msa0087110-mRNA-1:exon:23120;Parent=Msa0087110-mRNA-1
chr1_2 exon 67924060 67924404 67924060 ID=Msa0087110-mRNA-1:exon:23121;Parent=Msa0087110-mRNA-1
chr1_2 five_prime_UTR 67918987 67919136 67918987 ID=Msa0087110-mRNA-1:five_prime_utr;Parent=Msa0087110-mRNA-1
chr1_2 five_prime_UTR 67919157 67920436 67919157 ID=Msa0087110-mRNA-1:five_prime_utr;Parent=Msa0087110-mRNA-1
chr1_2 CDS 67920437 67920542 67920437 ID=Msa0087110-mRNA-1:cds;Parent=Msa0087110-mRNA-1
chr1_2 CDS 67920875 67921106 67920875 ID=Msa0087110-mRNA-1:cds;Parent=Msa0087110-mRNA-1
chr1_2 CDS 67921696 67921775 67921696 ID=Msa0087110-mRNA-1:cds;Parent=Msa0087110-mRNA-1
chr1_2 CDS 67922285 67922438 67922285 ID=Msa0087110-mRNA-1:cds;Parent=Msa0087110-mRNA-1
chr1_2 CDS 67922920 67922998 67922920 ID=Msa0087110-mRNA-1:cds;Parent=Msa0087110-mRNA-1
chr1_2 CDS 67923085 67923169 67923085 ID=Msa0087110-mRNA-1:cds;Parent=Msa0087110-mRNA-1
chr1_2 CDS 67923832 67923878 67923832 ID=Msa0087110-mRNA-1:cds;Parent=Msa0087110-mRNA-1
chr1_2 CDS 67924060 67924224 67924060 ID=Msa0087110-mRNA-1:cds;Parent=Msa0087110-mRNA-1
chr1_2 three_prime_UTR 67924225 67924404 67924225 ID=Msa0087110-mRNA-1:three_prime_utr;Parent=Msa0087110-mRNA-1
Gene Sequence

>Msa0087110

ATGTGGCCATTCAGGAAGAAAGGGATTTCTGGATTCTCAGGGAGTTCAACTGCTGAACAAGTTACTCATGGAATTGATGCAACTGGTCTCACTGCTATTGTCACTGGAGCAACCAGTGGTATTGGAGTTGAGACTACGCGTGTTCTTGCTTTGCGTGGTGTCCATGTGATTATGGCTGTTAGAAATATGGTTGCTGCTAATGATATCAAAGCAGCAATACTTAAGGAGATTCCCTCAGCTAAAATTGACGTCATGGAGTTAGATCTCAGTTCAATGGAATCTGTCAAGAAATTTGCATCCGAATTCAACTCCTCTGGTCTTCCGTTGAACATCTTGATAAACAATGCAGGAATCATGTCATGCCCTTTCATGCTGTCCAAAGACAACATTGAACTACAGTTTGCCACAAACCACTTAGGTCATTTTCTCTTGACAAATCTTTTGTTGGACACAATGACGAAAACAGCACACGAAAGTAAGAAAGAAGGAAGAATTGTTAATGTCTCTGGAGAGGCTTACACATTTGCATATTCGGAAGGAATCCGTTTTGACAAAATTAATGACCAATCAAGTTACAACAAACAGAGTGCATATGGACAGTCAAAGCTTGCTAACATTTTACATGCCAATGAGCTTGCAAGACGCCTCAAGGATGATGGGGTGGATATCACTGTGAATTCTCTTCATCCAGGAATCATTCTCACCAATCTTTCCCGCCATATGGGTGTAATCCACGGTATAATACAGGTGATTGGGAAACTTGTGATGAAAAATGTTCAGCAGGGGGCAGCCACAACCTGCTATGTAGCATTGCACCCACAAGTGAAGGGAATTAGTGGTGAGTATTTTTCAGACAACAATGTGGCCAAAAGAGAATCACAGGGAAGGGACGCTGATTTGGCTAAGAAACTTTGGGATTTCAGCATGAATTTGATTAAGGAGGAATAG

Protein sequence

>Msa0087110

MWPFRKKGISGFSGSSTAEQVTHGIDATGLTAIVTGATSGIGVETTRVLALRGVHVIMAVRNMVAANDIKAAILKEIPSAKIDVMELDLSSMESVKKFASEFNSSGLPLNILINNAGIMSCPFMLSKDNIELQFATNHLGHFLLTNLLLDTMTKTAHESKKEGRIVNVSGEAYTFAYSEGIRFDKINDQSSYNKQSAYGQSKLANILHANELARRLKDDGVDITVNSLHPGIILTNLSRHMGVIHGIIQVIGKLVMKNVQQGAATTCYVALHPQVKGISGEYFSDNNVAKRESQGRDADLAKKLWDFSMNLIKEE*