AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0143980

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0143980 MtrunA17_Chr1g0160041 96.413 697 14 2 1 687 1 696 0.0 1368
Msa0143980 MtrunA17_Chr3g0124631 71.857 700 180 4 1 686 1 697 0.0 1031
Msa0143980 MtrunA17_Chr3g0120731 61.351 696 252 5 5 686 35 727 0.0 870
Msa0143980 MtrunA17_Chr1g0205711 32.974 649 373 12 57 686 80 685 7.33e-107 340
Msa0143980 MtrunA17_Chr1g0194371 32.457 647 379 15 62 687 46 655 1.84e-95 308
Msa0143980 MtrunA17_Chr5g0396691 32.006 653 385 16 56 687 42 656 2.09e-90 295
Msa0143980 MtrunA17_Chr5g0396711 31.547 653 388 16 56 687 42 656 4.90e-88 289
Msa0143980 MtrunA17_Chr8g0388081 30.492 610 371 12 104 687 13 595 1.89e-86 283
Msa0143980 MtrunA17_Chr4g0034181 30.807 607 367 15 104 685 73 651 2.13e-86 285
Msa0143980 MtrunA17_Chr7g0270221 31.115 646 341 16 57 678 41 606 8.01e-85 280
Msa0143980 MtrunA17_Chr1g0162621 29.787 611 369 16 104 685 74 653 6.19e-78 262
Msa0143980 MtrunA17_Chr3g0121931 24.769 650 379 17 109 685 107 719 2.01e-37 149
Msa0143980 MtrunA17_Chr3g0121951 25.234 642 383 22 109 685 105 714 3.58e-34 139
Msa0143980 MtrunA17_Chr8g0377991 24.266 647 388 19 109 685 109 723 8.42e-30 125
Msa0143980 MtrunA17_Chr4g0039791 35.465 172 100 6 402 570 316 479 7.98e-18 87.4
Msa0143980 MtrunA17_Chr5g0409791 28.182 330 149 18 257 569 227 485 1.34e-15 80.5
Msa0143980 MtrunA17_Chr5g0409771 24.286 490 273 19 109 577 68 480 7.56e-15 78.2
Msa0143980 MtrunA17_Chr5g0395431 33.529 170 87 8 412 569 349 504 2.96e-13 73.2
Msa0143980 MtrunA17_Chr2g0327341 32.335 167 90 9 412 569 304 456 4.28e-13 72.4
Msa0143980 MtrunA17_Chr5g0433231 33.540 161 90 5 434 583 322 476 5.21e-13 72.0
Msa0143980 MtrunA17_Chr1g0180541 30.723 166 96 7 412 569 311 465 9.52e-13 71.2
Msa0143980 MtrunA17_Chr5g0433221 41.905 105 55 3 479 583 378 476 2.55e-12 70.1
Msa0143980 MtrunA17_Chr6g0471921 33.129 163 93 6 411 569 282 432 6.32e-12 68.6
Msa0143980 MtrunA17_Chr5g0433241 35.714 168 83 9 415 568 304 460 1.14e-11 67.8
Msa0143980 MtrunA17_Chr3g0116271 35.570 149 80 7 412 554 323 461 1.24e-11 67.8
Msa0143980 MtrunA17_Chr3g0109731 32.934 167 90 6 415 568 306 463 6.73e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0143980 AT1G77590.1 70.445 697 189 5 1 686 1 691 0.0 1021
Msa0143980 AT1G77590.2 76.782 547 114 2 150 686 2 545 0.0 881
Msa0143980 AT2G04350.2 61.087 681 247 6 20 686 44 720 0.0 851
Msa0143980 AT2G04350.1 61.087 681 247 6 20 686 44 720 0.0 851
Msa0143980 AT5G27600.1 33.539 647 372 14 57 686 83 688 2.51e-113 357
Msa0143980 AT3G05970.1 33.643 645 372 13 57 685 83 687 2.42e-105 336
Msa0143980 AT2G47240.1 31.825 663 378 16 48 685 39 652 5.38e-90 295
Msa0143980 AT2G47240.2 31.825 663 378 16 48 685 39 652 5.38e-90 295
Msa0143980 AT2G47240.3 31.825 663 378 16 48 685 39 652 5.38e-90 295
Msa0143980 AT2G47240.4 32.512 609 360 13 102 685 11 593 5.06e-89 290
Msa0143980 AT4G11030.1 30.149 670 403 16 40 687 31 657 3.15e-88 290
Msa0143980 AT4G23850.1 30.677 665 394 17 46 687 37 657 3.11e-86 285
Msa0143980 AT1G64400.1 29.876 646 392 15 62 685 49 655 1.03e-85 283
Msa0143980 AT1G49430.1 29.366 647 398 13 62 686 49 658 2.85e-84 279
Msa0143980 AT1G49430.2 28.513 491 292 13 62 530 49 502 1.34e-53 193
Msa0143980 AT3G23790.1 25.273 641 385 21 109 685 111 721 1.74e-36 146
Msa0143980 AT4G14070.1 23.839 646 379 19 109 686 127 727 1.36e-33 137
Msa0143980 AT4G19010.1 29.381 388 183 20 251 610 205 529 9.88e-21 97.1
Msa0143980 AT4G05160.1 28.800 250 135 12 412 635 309 541 2.51e-15 80.1
Msa0143980 AT1G20500.1 25.628 398 211 16 257 634 214 546 3.26e-15 79.7
Msa0143980 AT1G75960.1 34.197 193 96 7 408 583 296 474 4.64e-13 72.8
Msa0143980 AT3G48990.1 31.902 163 97 5 411 570 281 432 7.25e-13 72.0
Msa0143980 AT1G21540.1 33.540 161 91 5 434 583 322 477 8.13e-13 72.0
Msa0143980 AT1G20510.2 34.810 158 92 6 415 569 312 461 1.72e-12 70.9
Msa0143980 AT5G16370.1 34.375 192 84 8 415 583 302 474 1.77e-12 70.9
Msa0143980 AT1G77240.1 43.956 91 46 2 493 583 390 475 4.62e-12 69.7
Msa0143980 AT5G16340.1 34.254 181 99 7 415 583 302 474 4.88e-12 69.3
Msa0143980 AT1G65060.1 24.008 479 271 19 110 569 77 481 5.97e-12 69.3
Msa0143980 AT1G20510.3 34.965 143 83 5 415 554 312 447 1.42e-11 67.8
Msa0143980 AT3G21240.1 26.908 249 147 11 412 639 316 550 1.45e-11 68.2
Msa0143980 AT3G21230.1 26.337 243 157 8 412 640 331 565 1.56e-11 67.8
Msa0143980 AT1G21530.2 40.659 91 49 2 493 583 389 474 2.60e-11 67.0
Msa0143980 AT1G21530.1 40.659 91 49 2 493 583 387 472 2.68e-11 67.0
Msa0143980 AT1G65060.2 23.769 467 258 19 110 554 77 467 2.95e-11 67.0

Find 196 sgRNAs with CRISPR-Local

Find 425 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTGGTGGTGCTCCCCTTTC+TGG 0.104706 1_4:+3242161 Msa0143980:CDS
TCATAGGCTAACTAGTTATT+TGG 0.187437 1_4:+3245665 Msa0143980:exon
TCTTCCTTGCTCATTTATTA+AGG 0.207102 1_4:+3243138 Msa0143980:CDS
GGGGCTTGGAGAAGGCTCTC+TGG 0.212062 1_4:+3242078 Msa0143980:CDS
TGAGTGGTTCCTTGCTCTTC+AGG 0.218360 1_4:+3238952 Msa0143980:CDS
TGTTCCCAAACTTGAGAAAA+AGG 0.223387 1_4:+3241180 Msa0143980:CDS
CTGGAACTCCACGGCGTTTA+GGG 0.224728 1_4:-3238586 None:intergenic
TTCTGCTTCAGGGTTGTTTC+AGG 0.236650 1_4:+3240186 Msa0143980:intron
TGTGTTGATGCCAACTTTAT+TGG 0.245256 1_4:+3241481 Msa0143980:CDS
AATCAAGGAATTCCTTATTC+AGG 0.263628 1_4:+3244875 Msa0143980:CDS
TGATCGTCCGCGGAGTTTAC+TGG 0.266065 1_4:-3238605 None:intergenic
AAATTCATGCATCAAATAAC+AGG 0.274932 1_4:+3245753 Msa0143980:three_prime_UTR
ACTGGAACTCCACGGCGTTT+AGG 0.295027 1_4:-3238587 None:intergenic
AGGAGGTTGAAAGCAGTTAA+TGG 0.295468 1_4:+3242038 Msa0143980:CDS
GAAGAAGTTACTCAGAAAAT+TGG 0.300791 1_4:-3238463 None:intergenic
ATGGAAGCTGGTTTGGAGCC+TGG 0.309896 1_4:+3242057 Msa0143980:CDS
AGAAATCATTGATCGTAAAA+AGG 0.325053 1_4:+3244168 Msa0143980:CDS
CTGGTTTGGAGCCTGGGGCT+TGG 0.328472 1_4:+3242064 Msa0143980:CDS
AGACCATATCCTTGACCTAT+TGG 0.336719 1_4:-3243046 None:intergenic
TACTCAGAAAATTGGTGTTT+TGG 0.339274 1_4:-3238455 None:intergenic
TGGAAGCTGGTTTGGAGCCT+GGG 0.345795 1_4:+3242058 Msa0143980:CDS
GCAGTTAATGGAAGCTGGTT+TGG 0.349164 1_4:+3242050 Msa0143980:CDS
TGCTAGTGGTTTGGCTGTGT+TGG 0.354855 1_4:+3238883 Msa0143980:CDS
GGGCTTGGAGAAGGCTCTCT+GGG 0.360923 1_4:+3242079 Msa0143980:CDS
TGGAGCCTGGGGCTTGGAGA+AGG 0.364492 1_4:+3242070 Msa0143980:CDS
TTAGTTAAATATCCACCTTC+AGG 0.376720 1_4:-3243658 None:intergenic
ATGGAAAGGATGAGAGGGTT+GGG 0.386145 1_4:+3238909 Msa0143980:CDS
GTTGGGATACCTATAGGATA+TGG 0.388445 1_4:+3241395 Msa0143980:CDS
CCTCGTGGAGAAATTGTAAT+TGG 0.388867 1_4:+3243694 Msa0143980:CDS
TGTAACGATGTATGCATCAT+TGG 0.392960 1_4:+3240223 Msa0143980:CDS
ATAACTTCAGAAGATCTTCC+TGG 0.394589 1_4:-3245637 None:intergenic
TCTGAAGTTATACGCTTCAT+AGG 0.395208 1_4:+3245649 Msa0143980:CDS
TGCGGCTAGGTTGATGAAAA+AGG 0.395377 1_4:+3244091 Msa0143980:intron
GATCCATGGACACCTGAGTC+TGG 0.398942 1_4:+3245563 Msa0143980:CDS
CTCAGTCCACATTGGAAGAA+TGG 0.398978 1_4:+3244846 Msa0143980:CDS
GGAAGCAAAGAAAGCTCGTT+TGG 0.403415 1_4:+3245502 Msa0143980:intron
TAGGGTGGTTAGTGCGGAAC+AGG 0.411432 1_4:-3238568 None:intergenic
TTAAATTGCTTTCTGATCCA+TGG 0.411441 1_4:+3245549 Msa0143980:CDS
CAAGTGCCACACAGTAACTA+TGG 0.413049 1_4:-3244814 None:intergenic
GCATGGAGAGTATGTTTCCT+TGG 0.413823 1_4:+3244207 Msa0143980:CDS
CTGCTGAGTATCACCAGAAA+GGG 0.422987 1_4:-3242174 None:intergenic
GCTAGTGGTTTGGCTGTGTT+GGG 0.423572 1_4:+3238884 Msa0143980:CDS
AAGATAAAGAAAGGAACAAA+GGG 0.428594 1_4:+3241449 Msa0143980:CDS
TCAGTCCACATTGGAAGAAT+GGG 0.429822 1_4:+3244847 Msa0143980:CDS
AGTGGTTGTTTCGAAGGAAA+TGG 0.431521 1_4:+3238760 Msa0143980:CDS
CGCATCCGTTTCATACTGTC+TGG 0.432950 1_4:+3242143 Msa0143980:CDS
TGTGAGATTTGCTAGTGGTT+TGG 0.437204 1_4:+3238874 Msa0143980:CDS
TATTTGGATGTATCTATTGA+GGG 0.440782 1_4:+3245681 Msa0143980:three_prime_UTR
ATGATAACTGCAACATCAGC+TGG 0.443496 1_4:-3240618 None:intergenic
ATACCTCAGCTGCTAGTTCA+AGG 0.446682 1_4:-3241237 None:intergenic
GGCCGTCAGAAAGACTTTCC+AGG 0.457546 1_4:+3245619 Msa0143980:CDS
ATTTGCTTCGCCGGTGGAGA+CGG 0.459944 1_4:+3238655 Msa0143980:CDS
AAAGGAGATCCATATCCTAT+AGG 0.461389 1_4:-3241404 None:intergenic
CATGGAAAGGATGAGAGGGT+TGG 0.461442 1_4:+3238908 Msa0143980:CDS
TTATTTGGATGTATCTATTG+AGG 0.465505 1_4:+3245680 Msa0143980:three_prime_UTR
CATGGAGAGTATGTTTCCTT+GGG 0.466180 1_4:+3244208 Msa0143980:CDS
TGCTTTCAACCTCCTCTCAT+AGG 0.467574 1_4:-3242030 None:intergenic
CCTCATCTGTTGGACACGGC+TGG 0.471706 1_4:+3240526 Msa0143980:CDS
GCAGCAGTTGGGATACCTAT+AGG 0.472722 1_4:+3241389 Msa0143980:CDS
CAGTTCATCAATATCTGTCT+TGG 0.475583 1_4:+3242194 Msa0143980:CDS
AGAGGTAAATCAGCATCAAC+AGG 0.476714 1_4:-3240594 None:intergenic
CCATCTGATGCCTCATCTGT+TGG 0.477457 1_4:+3240516 Msa0143980:CDS
ACAATTTCTCCACGAGGCAT+TGG 0.478544 1_4:-3243688 None:intergenic
AAGTAACCAAGAGTGACATT+TGG 0.478964 1_4:-3243721 None:intergenic
TGAAAGCAGTTAATGGAAGC+TGG 0.480204 1_4:+3242045 Msa0143980:CDS
GAAGAATGGGCTTCAAATCA+AGG 0.482234 1_4:+3244860 Msa0143980:CDS
AACAGGAGAGTTGCGAGGAT+GGG 0.487307 1_4:-3238551 None:intergenic
TAGAATTTGATGGCAGCAGT+TGG 0.491226 1_4:+3241377 Msa0143980:intron
CCAATGTAGGTGAATGCAAC+GGG 0.492645 1_4:+3241978 Msa0143980:intron
TTGAATTGGGTGAGTATGAA+TGG 0.493545 1_4:+3238822 Msa0143980:CDS
AAAACACTTGTAAATATTAG+CGG 0.496596 1_4:+3240447 Msa0143980:CDS
GAACAGGAGAGTTGCGAGGA+TGG 0.496821 1_4:-3238552 None:intergenic
GGTGGTCCAAATGTCACTCT+TGG 0.500524 1_4:+3243715 Msa0143980:CDS
TGGTTCTACACTGGTGACAT+AGG 0.500937 1_4:+3244121 Msa0143980:CDS
CCGGTGGAGACGGCGTGGGA+AGG 0.502155 1_4:+3238665 Msa0143980:CDS
TTTATGTCACTCATTGAATG+AGG 0.503431 1_4:+3240256 Msa0143980:CDS
GTAACGATGTATGCATCATT+GGG 0.503568 1_4:+3240224 Msa0143980:CDS
TTACTGTGTGGCACTTGTTG+TGG 0.503677 1_4:+3244820 Msa0143980:CDS
GAGTATGATGGTGACAATGT+AGG 0.503858 1_4:-3238528 None:intergenic
TTAATAAATGAGCAAGGAAG+AGG 0.507013 1_4:-3243136 None:intergenic
GATGTATCTGTGAGGGTCAA+AGG 0.507460 1_4:-3241422 None:intergenic
GTCATTTCCAGTGCTCCAAT+AGG 0.507815 1_4:+3243031 Msa0143980:intron
ATGGAGAAGAGTGGTGGTGA+TGG 0.510454 1_4:+3238779 Msa0143980:CDS
GCTCCAATAGGTCAAGGATA+TGG 0.512887 1_4:+3243043 Msa0143980:CDS
AGTATGATGGTGACAATGTA+GGG 0.514432 1_4:-3238527 None:intergenic
AGTTCATCAATATCTGTCTT+GGG 0.515096 1_4:+3242195 Msa0143980:CDS
TTTGCAGATGTTAAGCGACT+TGG 0.516699 1_4:+3240561 Msa0143980:CDS
ACAGGAGAGTTGCGAGGATG+GGG 0.517085 1_4:-3238550 None:intergenic
GAGAGCCTTCTCCAAGCCCC+AGG 0.517765 1_4:-3242075 None:intergenic
GGCTGTGTTGGGACATGGAA+AGG 0.517980 1_4:+3238895 Msa0143980:CDS
CAAGATAAAGAAAGGAACAA+AGG 0.518432 1_4:+3241448 Msa0143980:CDS
ATTCTTGACCGTGTTCGCGA+TGG 0.519390 1_4:+3241518 Msa0143980:CDS
AACAAGAGTGGTTGTTTCGA+AGG 0.522687 1_4:+3238754 Msa0143980:CDS
CGAACACGGTCAAGAATTGC+TGG 0.522952 1_4:-3241512 None:intergenic
AGAATTTGATGGCAGCAGTT+GGG 0.524314 1_4:+3241378 Msa0143980:intron
CTTTAATTAATCATCTGTGA+TGG 0.528944 1_4:-3245810 None:intergenic
GAGAAGAGTGGTGGTGATGG+TGG 0.532291 1_4:+3238782 Msa0143980:CDS
AAGCCAGACTCAGGTGTCCA+TGG 0.533358 1_4:-3245566 None:intergenic
ACATCAAGCAAGATAAAGAA+AGG 0.535370 1_4:+3241440 Msa0143980:CDS
GGTTTGGCTGTGTTGGGACA+TGG 0.539640 1_4:+3238890 Msa0143980:CDS
CCAACAGATGAGGCATCAGA+TGG 0.541242 1_4:-3240516 None:intergenic
GGCGTTTAGGGTGGTTAGTG+CGG 0.543038 1_4:-3238574 None:intergenic
GTAAACTCCGCGGACGATCA+AGG 0.545035 1_4:+3238608 Msa0143980:CDS
CGTGGAGAAATTGTAATTGG+TGG 0.547343 1_4:+3243697 Msa0143980:CDS
ATAGGGAGGTTTCATCAAGA+TGG 0.548115 1_4:+3244139 Msa0143980:CDS
CTTCGCCGGTGGAGACGGCG+TGG 0.549519 1_4:+3238660 Msa0143980:CDS
TTGCTGATACTAGGGTTGAG+TGG 0.550542 1_4:+3238936 Msa0143980:CDS
GATACATCTGTTGGCCGTGT+TGG 0.550940 1_4:+3243109 Msa0143980:CDS
AGAGTATGTTTCCTTGGGAA+AGG 0.550970 1_4:+3244213 Msa0143980:CDS
GCATACGGAGAGATTACTGT+TGG 0.551893 1_4:+3238730 Msa0143980:CDS
AATTGTTTGAAGAAGCATGC+AGG 0.551968 1_4:+3238705 Msa0143980:CDS
GGTACAGCAGCCAATAAAGT+TGG 0.552940 1_4:-3241491 None:intergenic
CCACACAGTAACTATGGAAA+GGG 0.553679 1_4:-3244808 None:intergenic
GGTGCATGCATCACTAGTAA+AGG 0.555060 1_4:+3244937 Msa0143980:CDS
AGGTCACGACAGTAATTTGT+GGG 0.556939 1_4:+3240412 Msa0143980:CDS
TGAACACTCCATCGCGAACA+CGG 0.558463 1_4:-3241526 None:intergenic
GGAAGCTGGTTTGGAGCCTG+GGG 0.562959 1_4:+3242059 Msa0143980:CDS
CACCACCAGACAGTATGAAA+CGG 0.564677 1_4:-3242148 None:intergenic
GGTTCTACACTGGTGACATA+GGG 0.565337 1_4:+3244122 Msa0143980:CDS
ACTGCTGAGTATCACCAGAA+AGG 0.570535 1_4:-3242175 None:intergenic
CTTGCTTGATGTATCTGTGA+GGG 0.571405 1_4:-3241429 None:intergenic
CCTTCCCACGCCGTCTCCAC+CGG 0.573161 1_4:-3238665 None:intergenic
TGCGAGGATGGGGAGTATGA+TGG 0.575752 1_4:-3238540 None:intergenic
CAGAAGATTTGCTTCGCCGG+TGG 0.575937 1_4:+3238649 Msa0143980:CDS
TTCCTGGAAAGTCTTTCTGA+CGG 0.577666 1_4:-3245621 None:intergenic
AGTTCAAGGATATGAGCCAT+TGG 0.579034 1_4:-3241223 None:intergenic
GCAGTGACTAAGCCAGACTC+AGG 0.581299 1_4:-3245575 None:intergenic
AGAAGCATGCAGGAAGCATA+CGG 0.584187 1_4:+3238715 Msa0143980:CDS
TAGCTAATCGACTGGCCTGA+AGG 0.584227 1_4:+3243643 Msa0143980:intron
TCCAGTGCTCCAATAGGTCA+AGG 0.584850 1_4:+3243037 Msa0143980:intron
TTTACCTTAATAAATGAGCA+AGG 0.585073 1_4:-3243142 None:intergenic
TGTGGCTTCTCAGTCCACAT+TGG 0.586175 1_4:+3244838 Msa0143980:CDS
GGGACATGGAAAGGATGAGA+GGG 0.587034 1_4:+3238904 Msa0143980:CDS
CAACATTATATTGTCCACAT+AGG 0.588682 1_4:-3244777 None:intergenic
ATTACTGTTGGGAACAAGAG+TGG 0.589151 1_4:+3238742 Msa0143980:CDS
GATGTATGCATCATTGGGAG+AGG 0.590579 1_4:+3240229 Msa0143980:CDS
AATTCATGCATCAAATAACA+GGG 0.591013 1_4:+3245754 Msa0143980:three_prime_UTR
GCCAATGTAGGTGAATGCAA+CGG 0.592102 1_4:+3241977 Msa0143980:intron
GAACAGAAGATTTGCTTCGC+CGG 0.592463 1_4:+3238646 Msa0143980:CDS
GCCACACAGTAACTATGGAA+AGG 0.592809 1_4:-3244809 None:intergenic
AAAATCCGAGCAATTCTTGG+TGG 0.592932 1_4:+3242119 Msa0143980:CDS
ACTGCAACATCAGCTGGGAG+AGG 0.595197 1_4:-3240612 None:intergenic
TCGAAGGAAATGGAGAAGAG+TGG 0.595299 1_4:+3238770 Msa0143980:CDS
CTAATCGACTGGCCTGAAGG+TGG 0.598093 1_4:+3243646 Msa0143980:CDS
TGGGACATGGAAAGGATGAG+AGG 0.600615 1_4:+3238903 Msa0143980:CDS
TTAGTATCATACCTTTCCCA+AGG 0.600980 1_4:-3244224 None:intergenic
TTTATTTAGCCTATGAGAGG+AGG 0.601307 1_4:+3242021 Msa0143980:CDS
GGTCTTACAGAGACTTGTGC+TGG 0.601412 1_4:+3243064 Msa0143980:CDS
AAGTCGCTTAACATCTGCAA+AGG 0.603112 1_4:-3240559 None:intergenic
CCCTTTCCATAGTTACTGTG+TGG 0.606415 1_4:+3244808 Msa0143980:CDS
TGCGACCACCAAGAATTGCT+CGG 0.608998 1_4:-3242124 None:intergenic
TGCTCTCAAGCTCAAGAGAG+AGG 0.609631 1_4:+3245598 Msa0143980:CDS
GGAAGGAGTGAGTACATTGG+CGG 0.610244 1_4:+3238682 Msa0143980:CDS
TATCCTTGAACTAGCAGCTG+AGG 0.611422 1_4:+3241234 Msa0143980:CDS
ATATCTAGCATACTTGCCAA+TGG 0.611559 1_4:+3241207 Msa0143980:CDS
TTCGCCGGTGGAGACGGCGT+GGG 0.611781 1_4:+3238661 Msa0143980:CDS
GGAATGAGATGGTTCTACAC+TGG 0.616046 1_4:+3244112 Msa0143980:CDS
TCTTATTGTCAGCTCCTATG+TGG 0.616504 1_4:+3244763 Msa0143980:CDS
GACATTGTTAAACTGCAGCA+TGG 0.618080 1_4:+3244190 Msa0143980:CDS
CTCTAAAGAAGAAAGCATCA+AGG 0.618470 1_4:+3244913 Msa0143980:CDS
TCTACACTGGTGACATAGGG+AGG 0.620080 1_4:+3244125 Msa0143980:CDS
ATAAATGAGCAAGGAAGAGG+AGG 0.620903 1_4:-3243133 None:intergenic
GAGGTCACGACAGTAATTTG+TGG 0.621092 1_4:+3240411 Msa0143980:CDS
CTTACAGAGACTTGTGCTGG+TGG 0.623479 1_4:+3243067 Msa0143980:CDS
TGATAACTGCAACATCAGCT+GGG 0.625199 1_4:-3240617 None:intergenic
AAGGAAATGGAGAAGAGTGG+TGG 0.626690 1_4:+3238773 Msa0143980:CDS
ATCCGTTTCATACTGTCTGG+TGG 0.626955 1_4:+3242146 Msa0143980:CDS
CATACGGAGAGATTACTGTT+GGG 0.628004 1_4:+3238731 Msa0143980:CDS
CAACAGATGAGGCATCAGAT+GGG 0.637208 1_4:-3240515 None:intergenic
TCTTGCTTGATGTATCTGTG+AGG 0.638108 1_4:-3241430 None:intergenic
CACACCACCTTGATCGTCCG+CGG 0.642013 1_4:-3238615 None:intergenic
AATGACTCGCCAATGCCTCG+TGG 0.642641 1_4:+3243679 Msa0143980:CDS
TGAAGCCCATTCTTCCAATG+TGG 0.643581 1_4:-3244852 None:intergenic
GAACTCCACGGCGTTTAGGG+TGG 0.647316 1_4:-3238583 None:intergenic
CCAGCCGTGTCCAACAGATG+AGG 0.653025 1_4:-3240526 None:intergenic
GGTGTTGTGAGATTTGCTAG+TGG 0.658642 1_4:+3238869 Msa0143980:CDS
AGTGAAACGTGTGATATGCA+TGG 0.659671 1_4:+3240482 Msa0143980:CDS
GATGCCTCATCTGTTGGACA+CGG 0.661876 1_4:+3240522 Msa0143980:CDS
CGGAGTTTACTGGAACTCCA+CGG 0.663555 1_4:-3238595 None:intergenic
AATTACGAACCTGAAGAGCA+AGG 0.664494 1_4:-3238961 None:intergenic
TCGCGATGGAGTGTTCAAGA+AGG 0.664511 1_4:+3241532 Msa0143980:CDS
ATCAAGGTGGTGTGACAGTG+CGG 0.668330 1_4:+3238624 Msa0143980:CDS
AAAGACAAAAGAATCATACA+AGG 0.668435 1_4:+3243756 Msa0143980:CDS
AAGGAAGAGGAGGTCCAACA+CGG 0.670202 1_4:-3243123 None:intergenic
TGCTGAGTATCACCAGAAAG+GGG 0.679172 1_4:-3242173 None:intergenic
CCAATTACAATTTCTCCACG+AGG 0.687033 1_4:-3243694 None:intergenic
ATTCATGCATCAAATAACAG+GGG 0.687599 1_4:+3245755 Msa0143980:three_prime_UTR
TGCGGAACAGGAGAGTTGCG+AGG 0.692879 1_4:-3238556 None:intergenic
ATGTAGGTGAATGCAACGGG+AGG 0.694846 1_4:+3241981 Msa0143980:intron
GTGGGAAGGAGTGAGTACAT+TGG 0.695328 1_4:+3238679 Msa0143980:CDS
GATAAAGAAAGGAACAAAGG+GGG 0.697638 1_4:+3241451 Msa0143980:CDS
AGATAAAGAAAGGAACAAAG+GGG 0.697836 1_4:+3241450 Msa0143980:CDS
TAAAGAAGAAAGCATCAAGG+AGG 0.735856 1_4:+3244916 Msa0143980:CDS
ACTAACCACCCTAAACGCCG+TGG 0.744248 1_4:+3238578 Msa0143980:CDS
AACTCCGCGGACGATCAAGG+TGG 0.767764 1_4:+3238611 Msa0143980:CDS
TGGAGTTCCAGTAAACTCCG+CGG 0.773211 1_4:+3238598 Msa0143980:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAATATATGTTTAGATTTA+CGG + chr1_4:3243884-3243903 Msa0143980:intron 10.0%
!!! ATATATTGTTATTATTTTCT+TGG + chr1_4:3244068-3244087 Msa0143980:intron 10.0%
!! AAACAATAATACTATAAAAC+AGG + chr1_4:3239816-3239835 Msa0143980:intron 15.0%
!! AAATAATAATCTATCTACAT+TGG + chr1_4:3240081-3240100 Msa0143980:intron 15.0%
!! ACTAAAATTTGTATATTGAT+AGG - chr1_4:3242226-3242245 None:intergenic 15.0%
!!! AAATTTTAGTATTTTTCGAT+TGG + chr1_4:3242236-3242255 Msa0143980:intron 15.0%
!! GATTATTGAAAAAAAAAATG+AGG + chr1_4:3242271-3242290 Msa0143980:intron 15.0%
!!! ATAATATTTTCCTTTACAAA+AGG - chr1_4:3242915-3242934 None:intergenic 15.0%
!!! TTATGTATATTTTTACTTTG+AGG + chr1_4:3243189-3243208 Msa0143980:intron 15.0%
!! ATAAAGAAAGATAATCAATT+AGG - chr1_4:3243585-3243604 None:intergenic 15.0%
!! AATTATCCTATATAAGATAA+TGG - chr1_4:3243615-3243634 None:intergenic 15.0%
!!! TCTCTTAAATTTAAAATCAT+TGG + chr1_4:3244360-3244379 Msa0143980:intron 15.0%
!!! TGATTATTTTTTATAATGGA+TGG - chr1_4:3244396-3244415 None:intergenic 15.0%
!!! AGAGTGATTATTTTTTATAA+TGG - chr1_4:3244400-3244419 None:intergenic 15.0%
!! ACATATAAAAAAATTATCCT+AGG + chr1_4:3245122-3245141 Msa0143980:intron 15.0%
!! TTCTGTTTGGTTAAAAATAA+CGG + chr1_4:3239036-3239055 Msa0143980:intron 20.0%
!! CTTATTAAATTTGTAGTGTT+TGG + chr1_4:3239108-3239127 Msa0143980:intron 20.0%
!!! TTTTTTTGAATTAAGAGTGT+AGG + chr1_4:3239200-3239219 Msa0143980:intron 20.0%
!!! TTTTTTGAATTAAGAGTGTA+GGG + chr1_4:3239201-3239220 Msa0143980:intron 20.0%
!! TGAATTAAATTTGTAGTGTT+TGG + chr1_4:3239491-3239510 Msa0143980:intron 20.0%
!!! TGAAATTTTTTCTTCTCAAT+TGG - chr1_4:3239735-3239754 None:intergenic 20.0%
!!! TTTTATAATATAAGACCAAG+AGG + chr1_4:3239862-3239881 Msa0143980:intron 20.0%
!!! TTAAATCATTTCAAGTAGTA+AGG - chr1_4:3240027-3240046 None:intergenic 20.0%
!! TTATTTATGATAAGTGTAAC+AGG - chr1_4:3240067-3240086 None:intergenic 20.0%
!!! TTATTTGTCTCTTCAATTTT+GGG - chr1_4:3240124-3240143 None:intergenic 20.0%
!!! ATTATTTGTCTCTTCAATTT+TGG - chr1_4:3240125-3240144 None:intergenic 20.0%
!! AAAACACTTGTAAATATTAG+CGG + chr1_4:3240447-3240466 Msa0143980:CDS 20.0%
!! ATCAATTCAATCAATTTAGA+TGG + chr1_4:3240796-3240815 Msa0143980:intron 20.0%
!! TTTCAGTATTAGAAATTGTA+GGG - chr1_4:3241024-3241043 None:intergenic 20.0%
!! ATTTCAGTATTAGAAATTGT+AGG - chr1_4:3241025-3241044 None:intergenic 20.0%
!! TACAATTTCTAATACTGAAA+TGG + chr1_4:3241024-3241043 Msa0143980:intron 20.0%
!!! AAATTTTACCATACAAGAAA+AGG - chr1_4:3241088-3241107 None:intergenic 20.0%
!!! TTTTGTTCTTTGATATTGTA+AGG + chr1_4:3241663-3241682 Msa0143980:intron 20.0%
!! TTTGTTCTTTGATATTGTAA+GGG + chr1_4:3241664-3241683 Msa0143980:intron 20.0%
!!! TTTGTCATTTTGTAGATTTA+TGG + chr1_4:3241892-3241911 Msa0143980:intron 20.0%
!!! TTGTCATTTTGTAGATTTAT+GGG + chr1_4:3241893-3241912 Msa0143980:intron 20.0%
!!! GCTAAATAAAACAACTTTTT+TGG - chr1_4:3242011-3242030 None:intergenic 20.0%
!!! CTTTAATCTTGATTTCTTTT+AGG - chr1_4:3242324-3242343 None:intergenic 20.0%
!!! AGACTAAGAAATATAAGTTT+TGG + chr1_4:3242626-3242645 Msa0143980:intron 20.0%
!! CTAAATAACATTTACAAATG+TGG - chr1_4:3242845-3242864 None:intergenic 20.0%
!!! TTTTCTAAAGAGAAAAGAAA+CGG - chr1_4:3243785-3243804 None:intergenic 20.0%
!!! TTCTCTTTAGAAAAAAAGAT+AGG + chr1_4:3243791-3243810 Msa0143980:intron 20.0%
!!! ATTCTGTCATTTCATAAATT+TGG - chr1_4:3244338-3244357 None:intergenic 20.0%
!! GAAGAATTCAAATCAATAAA+TGG + chr1_4:3244437-3244456 Msa0143980:intron 20.0%
!! CAAAAAACAAGTGAATTATT+TGG - chr1_4:3245238-3245257 None:intergenic 20.0%
!!! CAAATAATTCACTTGTTTTT+TGG + chr1_4:3245236-3245255 Msa0143980:intron 20.0%
!! TTCATCATTGCAATAATTAA+GGG - chr1_4:3245452-3245471 None:intergenic 20.0%
!! ATTCATCATTGCAATAATTA+AGG - chr1_4:3245453-3245472 None:intergenic 20.0%
!!! GAAAGCAATTTAATTTTTGT+TGG - chr1_4:3245542-3245561 None:intergenic 20.0%
!!! AGTTTTTGAGAAAGTTGAAT+TGG + chr1_4:3238808-3238827 Msa0143980:CDS 25.0%
!!! GTTTTTGAGAAAGTTGAATT+GGG + chr1_4:3238809-3238828 Msa0143980:CDS 25.0%
!!! TGGTTAAAAATAACGGATAA+TGG + chr1_4:3239043-3239062 Msa0143980:intron 25.0%
!!! TTTTTGAATTAAGAGTGTAG+GGG + chr1_4:3239202-3239221 Msa0143980:intron 25.0%
!! CTTATCTGTTGACTAATATA+AGG - chr1_4:3239449-3239468 None:intergenic 25.0%
! AGCTTAATGCATAAACATTT+CGG - chr1_4:3240305-3240324 None:intergenic 25.0%
!! TCCAAAAATAGTTTTTGTAC+TGG + chr1_4:3240700-3240719 Msa0143980:intron 25.0%
!! TCCAGTACAAAAACTATTTT+TGG - chr1_4:3240704-3240723 None:intergenic 25.0%
! CAGTCCTCAAATTTATAAAA+CGG - chr1_4:3240990-3241009 None:intergenic 25.0%
!! TGGTGATTACTTCTATATTT+TGG + chr1_4:3241044-3241063 Msa0143980:intron 25.0%
! GAAAAGGATAAATAGAAGAA+CGG - chr1_4:3241072-3241091 None:intergenic 25.0%
!! CTATTTATCCTTTTCTTGTA+TGG + chr1_4:3241077-3241096 Msa0143980:intron 25.0%
!! AAAATTTCTTTCTTTTGCAC+AGG + chr1_4:3241101-3241120 Msa0143980:intron 25.0%
!! AAATTTCTTTCTTTTGCACA+GGG + chr1_4:3241102-3241121 Msa0143980:intron 25.0%
!!! GAATGCATTTTAGAATTTGA+TGG + chr1_4:3241367-3241386 Msa0143980:intron 25.0%
! AAGATAAAGAAAGGAACAAA+GGG + chr1_4:3241449-3241468 Msa0143980:CDS 25.0%
! TAGTGATTTACTTGTTTGAA+GGG - chr1_4:3241643-3241662 None:intergenic 25.0%
! ATAGTGATTTACTTGTTTGA+AGG - chr1_4:3241644-3241663 None:intergenic 25.0%
!! GAGTTGATTGAATTAATTGA+CGG - chr1_4:3241708-3241727 None:intergenic 25.0%
!! AGTTTCTGGAAATTTGTTTA+GGG - chr1_4:3241768-3241787 None:intergenic 25.0%
!! AAGTTTCTGGAAATTTGTTT+AGG - chr1_4:3241769-3241788 None:intergenic 25.0%
! GCAACATTTAGAAGATTAAA+TGG + chr1_4:3241936-3241955 Msa0143980:intron 25.0%
!! TAATCTTGATTTCTTTTAGG+AGG - chr1_4:3242321-3242340 None:intergenic 25.0%
!!! GTTTTTTTTATCAGTACCTA+TGG - chr1_4:3242440-3242459 None:intergenic 25.0%
!! TTACTTAGGAGTACAATTAT+TGG + chr1_4:3242498-3242517 Msa0143980:intron 25.0%
! TTTACCTTAATAAATGAGCA+AGG - chr1_4:3243145-3243164 None:intergenic 25.0%
!! AACTGAAGTGTTATAATAGT+TGG + chr1_4:3243273-3243292 Msa0143980:intron 25.0%
! GAATTGAAAGTTATAAGAGT+TGG + chr1_4:3243302-3243321 Msa0143980:intron 25.0%
!! AATATTTAAGCATTTGCTAG+AGG - chr1_4:3243409-3243428 None:intergenic 25.0%
! TCTTATGATGTAGATAATTG+TGG - chr1_4:3243433-3243452 None:intergenic 25.0%
! TTGATTGCAGTATATTGAAT+TGG + chr1_4:3243544-3243563 Msa0143980:intron 25.0%
! AGAAAGATAATCAATTAGGA+AGG - chr1_4:3243581-3243600 None:intergenic 25.0%
! AAAGACAAAAGAATCATACA+AGG + chr1_4:3243756-3243775 Msa0143980:CDS 25.0%
!! TCTTTAGAAAAAAAGATAGG+CGG + chr1_4:3243794-3243813 Msa0143980:intron 25.0%
!! TATCAGTAATGCTACTATTT+TGG + chr1_4:3243823-3243842 Msa0143980:intron 25.0%
! ACACAACTTTCAAATTTACA+TGG - chr1_4:3244029-3244048 None:intergenic 25.0%
!!! TTGTTATTATTTTCTTGGTG+CGG + chr1_4:3244073-3244092 Msa0143980:intron 25.0%
!! TTTTACGATCAATGATTTCT+AGG - chr1_4:3244168-3244187 None:intergenic 25.0%
! AGAAATCATTGATCGTAAAA+AGG + chr1_4:3244168-3244187 Msa0143980:CDS 25.0%
! ACTTGAAAAACAATTGTGAA+TGG - chr1_4:3244265-3244284 None:intergenic 25.0%
! CTTAAAAGTCATACAAATGA+TGG + chr1_4:3244592-3244611 Msa0143980:intron 25.0%
!!! ATATTTTGCTGTTGATTTAG+CGG - chr1_4:3245046-3245065 None:intergenic 25.0%
!!! GAATGCATATTTTGAACTTA+CGG + chr1_4:3245363-3245382 Msa0143980:intron 25.0%
! GTAGTTTATGAAATATTTGC+AGG + chr1_4:3245481-3245500 Msa0143980:intron 25.0%
! TTATTTGGATGTATCTATTG+AGG + chr1_4:3245680-3245699 Msa0143980:three_prime_UTR 25.0%
! TATTTGGATGTATCTATTGA+GGG + chr1_4:3245681-3245700 Msa0143980:three_prime_UTR 25.0%
! AAATTCATGCATCAAATAAC+AGG + chr1_4:3245753-3245772 Msa0143980:three_prime_UTR 25.0%
! AATTCATGCATCAAATAACA+GGG + chr1_4:3245754-3245773 Msa0143980:three_prime_UTR 25.0%
! CTTTAATTAATCATCTGTGA+TGG - chr1_4:3245813-3245832 None:intergenic 25.0%
!! TACTCAGAAAATTGGTGTTT+TGG - chr1_4:3238458-3238477 None:intergenic 30.0%
GAAGAAGTTACTCAGAAAAT+TGG - chr1_4:3238466-3238485 None:intergenic 30.0%
GAATAAACTTAGCTTCTGTT+TGG + chr1_4:3239023-3239042 Msa0143980:intron 30.0%
GTAGTGTTTGGTTAGATTAA+CGG + chr1_4:3239503-3239522 Msa0143980:intron 30.0%
CACGTAGATATGAAAATGAT+AGG + chr1_4:3239950-3239969 Msa0143980:intron 30.0%
! TTAGTTGGTATGCAATGTTA+GGG - chr1_4:3240002-3240021 None:intergenic 30.0%
! TTTAGTTGGTATGCAATGTT+AGG - chr1_4:3240003-3240022 None:intergenic 30.0%
TCAAGTAGTAAGGATTTAGT+TGG - chr1_4:3240017-3240036 None:intergenic 30.0%
! ATACTTAAGTTTTCTGCTTC+AGG + chr1_4:3240175-3240194 Msa0143980:intron 30.0%
! TACTTAAGTTTTCTGCTTCA+GGG + chr1_4:3240176-3240195 Msa0143980:intron 30.0%
TTTATGTCACTCATTGAATG+AGG + chr1_4:3240256-3240275 Msa0143980:CDS 30.0%
GTTTATGCATTAAGCTGTTA+TGG + chr1_4:3240309-3240328 Msa0143980:intron 30.0%
ATTGACGATCTTCAATTTCA+AGG - chr1_4:3240757-3240776 None:intergenic 30.0%
!!! CATGCCGTTTTATAAATTTG+AGG + chr1_4:3240983-3241002 Msa0143980:intron 30.0%
! AATTTCTTTCTTTTGCACAG+GGG + chr1_4:3241103-3241122 Msa0143980:intron 30.0%
! ACATCCTTTTTCTCAAGTTT+GGG - chr1_4:3241187-3241206 None:intergenic 30.0%
! TACATCCTTTTTCTCAAGTT+TGG - chr1_4:3241188-3241207 None:intergenic 30.0%
AAACACAAGAAAATGGAAAC+AGG - chr1_4:3241329-3241348 None:intergenic 30.0%
CACACAAAAACACAAGAAAA+TGG - chr1_4:3241336-3241355 None:intergenic 30.0%
!! ATTCTAAAATGCATTCGAGT+TGG - chr1_4:3241363-3241382 None:intergenic 30.0%
ACATCAAGCAAGATAAAGAA+AGG + chr1_4:3241440-3241459 Msa0143980:CDS 30.0%
CAAGATAAAGAAAGGAACAA+AGG + chr1_4:3241448-3241467 Msa0143980:CDS 30.0%
AGATAAAGAAAGGAACAAAG+GGG + chr1_4:3241450-3241469 Msa0143980:CDS 30.0%
!!! TGTTTTATTTAGCCTATGAG+AGG + chr1_4:3242018-3242037 Msa0143980:CDS 30.0%
AAAAAAATCCGAGCAATTCT+TGG + chr1_4:3242116-3242135 Msa0143980:CDS 30.0%
AGTTCATCAATATCTGTCTT+GGG + chr1_4:3242195-3242214 Msa0143980:CDS 30.0%
TTAAAAACACAAGCTAGACT+AGG + chr1_4:3242345-3242364 Msa0143980:intron 30.0%
! TTTTTATCAGTACCTATGGT+TGG - chr1_4:3242436-3242455 None:intergenic 30.0%
! TAATAGCCTGTCATTTACTT+AGG + chr1_4:3242484-3242503 Msa0143980:intron 30.0%
TCGGCATAACAGAATAAAAT+AGG - chr1_4:3242573-3242592 None:intergenic 30.0%
AAATCTGTTGAGTGCTAAAT+GGG + chr1_4:3242655-3242674 Msa0143980:intron 30.0%
!! TTAGCTGTATAAAAGTGTTC+TGG - chr1_4:3242722-3242741 None:intergenic 30.0%
!! GCTATTGAAGTTTGTTAGTT+TGG - chr1_4:3242774-3242793 None:intergenic 30.0%
GTTATTTAGCGTAAATGACA+AGG + chr1_4:3242856-3242875 Msa0143980:intron 30.0%
ACAACTTTATCATTGCACTA+TGG + chr1_4:3242881-3242900 Msa0143980:intron 30.0%
!! GATTTTGATGATACATCTGT+TGG + chr1_4:3243100-3243119 Msa0143980:CDS 30.0%
TTAATAAATGAGCAAGGAAG+AGG - chr1_4:3243139-3243158 None:intergenic 30.0%
TCTTCCTTGCTCATTTATTA+AGG + chr1_4:3243138-3243157 Msa0143980:CDS 30.0%
! TGAAGTGTTATAATAGTTGG+TGG + chr1_4:3243276-3243295 Msa0143980:intron 30.0%
!! AAAAAGGTTCCTCTAAAATG+AGG - chr1_4:3243365-3243384 None:intergenic 30.0%
TCTACATCATAAGATGTGAT+AGG + chr1_4:3243439-3243458 Msa0143980:intron 30.0%
! ATCCTATATAAGATAATGGC+AGG - chr1_4:3243611-3243630 None:intergenic 30.0%
TTAGTTAAATATCCACCTTC+AGG - chr1_4:3243661-3243680 None:intergenic 30.0%
! CTTTAGAAAAAAAGATAGGC+GGG + chr1_4:3243795-3243814 Msa0143980:intron 30.0%
!! AGTAATGCTACTATTTTGGA+TGG + chr1_4:3243827-3243846 Msa0143980:intron 30.0%
AACATATATTAAACCTGTCG+TGG - chr1_4:3243876-3243895 None:intergenic 30.0%
TGAGTTTGACAAAATCATTG+TGG - chr1_4:3243987-3244006 None:intergenic 30.0%
TTGATGAAAAAGGAATGAGA+TGG + chr1_4:3244101-3244120 Msa0143980:CDS 30.0%
GTAAGAATCTGATCATTTAG+TGG + chr1_4:3244311-3244330 Msa0143980:intron 30.0%
TTCTTCTACTGATGATAGTT+TGG - chr1_4:3244423-3244442 None:intergenic 30.0%
ACAAATGATGGTTTATGAAC+TGG + chr1_4:3244604-3244623 Msa0143980:intron 30.0%
! TTGTATTTTTCATCTGCAAC+TGG + chr1_4:3244715-3244734 Msa0143980:intron 30.0%
! GCAACTGGTTTATTAAATAC+AGG + chr1_4:3244730-3244749 Msa0143980:intron 30.0%
GGTTTATTAAATACAGGTTG+AGG + chr1_4:3244736-3244755 Msa0143980:intron 30.0%
CAACATTATATTGTCCACAT+AGG - chr1_4:3244780-3244799 None:intergenic 30.0%
AATCAAGGAATTCCTTATTC+AGG + chr1_4:3244875-3244894 Msa0143980:CDS 30.0%
!! AGTTCTGAAAAACCTGAATA+AGG - chr1_4:3244890-3244909 None:intergenic 30.0%
GCTAAATCAACAGCAAAATA+TGG + chr1_4:3245045-3245064 Msa0143980:intron 30.0%
!!! GAGCAAATTTTTTACGCTTT+GGG + chr1_4:3245067-3245086 Msa0143980:intron 30.0%
ATGGTATAAACCGTTATAGA+TGG + chr1_4:3245200-3245219 Msa0143980:intron 30.0%
TCAACTTAAGCCATCTATAA+CGG - chr1_4:3245213-3245232 None:intergenic 30.0%
GTACAATGTATGTTAGTAGT+AGG - chr1_4:3245297-3245316 None:intergenic 30.0%
TTAAATTGCTTTCTGATCCA+TGG + chr1_4:3245549-3245568 Msa0143980:CDS 30.0%
TCATAGGCTAACTAGTTATT+TGG + chr1_4:3245665-3245684 Msa0143980:exon 30.0%
AAATGAAGAGAAAAACACTC+AGG + chr1_4:3245722-3245741 Msa0143980:three_prime_UTR 30.0%
ATTCATGCATCAAATAACAG+GGG + chr1_4:3245755-3245774 Msa0143980:three_prime_UTR 30.0%
! AGTATGATGGTGACAATGTA+GGG - chr1_4:3238530-3238549 None:intergenic 35.0%
! AATTGTTTGAAGAAGCATGC+AGG + chr1_4:3238705-3238724 Msa0143980:CDS 35.0%
TTGAATTGGGTGAGTATGAA+TGG + chr1_4:3238822-3238841 Msa0143980:CDS 35.0%
! TCGTATGATGAAGCTTTTGA+TGG + chr1_4:3238848-3238867 Msa0143980:CDS 35.0%
! TTGGGATTTTTGCTGATACT+AGG + chr1_4:3238927-3238946 Msa0143980:CDS 35.0%
! TGGGATTTTTGCTGATACTA+GGG + chr1_4:3238928-3238947 Msa0143980:CDS 35.0%
ATCAGAAATTCGCTAAGAAG+TGG - chr1_4:3238988-3239007 None:intergenic 35.0%
GTTACCAATAATACTGCACA+CGG + chr1_4:3239688-3239707 Msa0143980:intron 35.0%
! TAAGACCAAGAGGATACTTT+TGG + chr1_4:3239872-3239891 Msa0143980:intron 35.0%
TACGTGTGAAATTTGATTGC+AGG - chr1_4:3239936-3239955 None:intergenic 35.0%
TGTAACGATGTATGCATCAT+TGG + chr1_4:3240223-3240242 Msa0143980:CDS 35.0%
GTAACGATGTATGCATCATT+GGG + chr1_4:3240224-3240243 Msa0143980:CDS 35.0%
TAAACATTTCGGTGAGACAA+AGG - chr1_4:3240294-3240313 None:intergenic 35.0%
GCAGTTATCATGTATACAAG+TGG + chr1_4:3240630-3240649 Msa0143980:intron 35.0%
! ATGTATACAAGTGGAAGTAC+TGG + chr1_4:3240639-3240658 Msa0143980:intron 35.0%
TGATTGAATTGATCGACAGA+TGG - chr1_4:3240789-3240808 None:intergenic 35.0%
TGTTCCCAAACTTGAGAAAA+AGG + chr1_4:3241180-3241199 Msa0143980:CDS 35.0%
ATATCTAGCATACTTGCCAA+TGG + chr1_4:3241207-3241226 Msa0143980:CDS 35.0%
AAAGGAGATCCATATCCTAT+AGG - chr1_4:3241407-3241426 None:intergenic 35.0%
GATAAAGAAAGGAACAAAGG+GGG + chr1_4:3241451-3241470 Msa0143980:CDS 35.0%
! TGTGTTGATGCCAACTTTAT+TGG + chr1_4:3241481-3241500 Msa0143980:CDS 35.0%
ACACATGAAGCATATGAGAT+AGG - chr1_4:3241591-3241610 None:intergenic 35.0%
TACTTGTTTGAAGGGAAGTT+TGG - chr1_4:3241635-3241654 None:intergenic 35.0%
TCAATCAACTCTGATGAATC+TGG + chr1_4:3241717-3241736 Msa0143980:intron 35.0%
TTTATTTAGCCTATGAGAGG+AGG + chr1_4:3242021-3242040 Msa0143980:CDS 35.0%
CAGTTCATCAATATCTGTCT+TGG + chr1_4:3242194-3242213 Msa0143980:CDS 35.0%
TGTACTCCTAAGTAAATGAC+AGG - chr1_4:3242493-3242512 None:intergenic 35.0%
AGTCTGATTCATTCTTAAGC+TGG - chr1_4:3242611-3242630 None:intergenic 35.0%
GAAATCTGTTGAGTGCTAAA+TGG + chr1_4:3242654-3242673 Msa0143980:intron 35.0%
CAAATGTGGAATTGCAATGT+GGG - chr1_4:3242831-3242850 None:intergenic 35.0%
ACAAATGTGGAATTGCAATG+TGG - chr1_4:3242832-3242851 None:intergenic 35.0%
!! GGCTTTTTCTCCTTTTGTAA+AGG + chr1_4:3242902-3242921 Msa0143980:intron 35.0%
!!! ATCTAGCTCTTTTAAAGCAG+AGG + chr1_4:3243233-3243252 Msa0143980:intron 35.0%
! TTCACAACTCCTCATTTTAG+AGG + chr1_4:3243353-3243372 Msa0143980:intron 35.0%
AGCCTGCCATTATCTTATAT+AGG + chr1_4:3243606-3243625 Msa0143980:intron 35.0%
!! TGTTTTGTTAGCTAATCGAC+TGG + chr1_4:3243635-3243654 Msa0143980:intron 35.0%
AAGTAACCAAGAGTGACATT+TGG - chr1_4:3243724-3243743 None:intergenic 35.0%
TAGATTTACGGTGAGTTTAG+TGG + chr1_4:3243896-3243915 Msa0143980:intron 35.0%
AGATTTACGGTGAGTTTAGT+GGG + chr1_4:3243897-3243916 Msa0143980:intron 35.0%
TTAGTATCATACCTTTCCCA+AGG - chr1_4:3244227-3244246 None:intergenic 35.0%
!! CTCTAAAGAAGAAAGCATCA+AGG + chr1_4:3244913-3244932 Msa0143980:CDS 35.0%
!! TAAAGAAGAAAGCATCAAGG+AGG + chr1_4:3244916-3244935 Msa0143980:CDS 35.0%
GTTAGAGGATTGTGATATGA+AGG - chr1_4:3244967-3244986 None:intergenic 35.0%
ACAATCCTCTAACTACATAG+TGG + chr1_4:3244974-3244993 Msa0143980:intron 35.0%
CATTACCACTATGTAGTTAG+AGG - chr1_4:3244982-3245001 None:intergenic 35.0%
!!! GGAGCAAATTTTTTACGCTT+TGG + chr1_4:3245066-3245085 Msa0143980:intron 35.0%
TGCTCTTATTCAAACAACCT+AGG - chr1_4:3245142-3245161 None:intergenic 35.0%
CTTCAAAGTTCAAGCTAAGA+TGG + chr1_4:3245181-3245200 Msa0143980:intron 35.0%
GATCCATCATGGATTCTTAA+GGG - chr1_4:3245275-3245294 None:intergenic 35.0%
GACTCTCTAAATACTGTCTT+TGG + chr1_4:3245385-3245404 Msa0143980:intron 35.0%
ATAACTTCAGAAGATCTTCC+TGG - chr1_4:3245640-3245659 None:intergenic 35.0%
! TCTGAAGTTATACGCTTCAT+AGG + chr1_4:3245649-3245668 Msa0143980:CDS 35.0%
! GAGTATGATGGTGACAATGT+AGG - chr1_4:3238531-3238550 None:intergenic 40.0%
CATACGGAGAGATTACTGTT+GGG + chr1_4:3238731-3238750 Msa0143980:CDS 40.0%
ATTACTGTTGGGAACAAGAG+TGG + chr1_4:3238742-3238761 Msa0143980:CDS 40.0%
! AACAAGAGTGGTTGTTTCGA+AGG + chr1_4:3238754-3238773 Msa0143980:CDS 40.0%
! AGTGGTTGTTTCGAAGGAAA+TGG + chr1_4:3238760-3238779 Msa0143980:CDS 40.0%
!! TGTGAGATTTGCTAGTGGTT+TGG + chr1_4:3238874-3238893 Msa0143980:CDS 40.0%
AATTACGAACCTGAAGAGCA+AGG - chr1_4:3238964-3238983 None:intergenic 40.0%
TTGTCCGTGTGCAGTATTAT+TGG - chr1_4:3239695-3239714 None:intergenic 40.0%
!! GCATACCAAAAGTATCCTCT+TGG - chr1_4:3239880-3239899 None:intergenic 40.0%
! TGTCTCTTCAATTTTGGGCT+GGG - chr1_4:3240119-3240138 None:intergenic 40.0%
! TTGTCTCTTCAATTTTGGGC+TGG - chr1_4:3240120-3240139 None:intergenic 40.0%
TCGGTGAGACAAAGGAAAAA+TGG - chr1_4:3240286-3240305 None:intergenic 40.0%
AATTCTGTTGTTGCAGACAG+AGG + chr1_4:3240392-3240411 Msa0143980:intron 40.0%
! AGGTCACGACAGTAATTTGT+GGG + chr1_4:3240412-3240431 Msa0143980:CDS 40.0%
AGTGAAACGTGTGATATGCA+TGG + chr1_4:3240482-3240501 Msa0143980:CDS 40.0%
AAGTCGCTTAACATCTGCAA+AGG - chr1_4:3240562-3240581 None:intergenic 40.0%
TTTGCAGATGTTAAGCGACT+TGG + chr1_4:3240561-3240580 Msa0143980:CDS 40.0%
AGAGGTAAATCAGCATCAAC+AGG - chr1_4:3240597-3240616 None:intergenic 40.0%
TGATAACTGCAACATCAGCT+GGG - chr1_4:3240620-3240639 None:intergenic 40.0%
ATGATAACTGCAACATCAGC+TGG - chr1_4:3240621-3240640 None:intergenic 40.0%
!! TGGAAGTACTGGATTACCTA+AGG + chr1_4:3240650-3240669 Msa0143980:intron 40.0%
! AGTACTGGATTACCTAAGGT+TGG + chr1_4:3240654-3240673 Msa0143980:intron 40.0%
GTGAAAGGAAATCCAACCTT+AGG - chr1_4:3240669-3240688 None:intergenic 40.0%
TGGACTGTCAATCTAGTGAA+AGG - chr1_4:3240684-3240703 None:intergenic 40.0%
AGTTCAAGGATATGAGCCAT+TGG - chr1_4:3241226-3241245 None:intergenic 40.0%
! TAGAATTTGATGGCAGCAGT+TGG + chr1_4:3241377-3241396 Msa0143980:intron 40.0%
! AGAATTTGATGGCAGCAGTT+GGG + chr1_4:3241378-3241397 Msa0143980:intron 40.0%
GTTGGGATACCTATAGGATA+TGG + chr1_4:3241395-3241414 Msa0143980:CDS 40.0%
CTTGCTTGATGTATCTGTGA+GGG - chr1_4:3241432-3241451 None:intergenic 40.0%
TCTTGCTTGATGTATCTGTG+AGG - chr1_4:3241433-3241452 None:intergenic 40.0%
CATGAAGCATATGAGATAGG+TGG - chr1_4:3241588-3241607 None:intergenic 40.0%
CATATGCTTCATGTGTGTGT+TGG + chr1_4:3241595-3241614 Msa0143980:intron 40.0%
! GCTCATTTGAAGCAAGTTTC+TGG - chr1_4:3241782-3241801 None:intergenic 40.0%
ACTTGCTTCATTGCCAATGT+AGG + chr1_4:3241965-3241984 Msa0143980:intron 40.0%
AGGAGGTTGAAAGCAGTTAA+TGG + chr1_4:3242038-3242057 Msa0143980:CDS 40.0%
TGAAAGCAGTTAATGGAAGC+TGG + chr1_4:3242045-3242064 Msa0143980:CDS 40.0%
AAAATCCGAGCAATTCTTGG+TGG + chr1_4:3242119-3242138 Msa0143980:CDS 40.0%
! TTATGCCGATTGAGCATTAG+AGG + chr1_4:3242584-3242603 Msa0143980:intron 40.0%
! TGTTGAGTGCTAAATGGGTT+TGG + chr1_4:3242660-3242679 Msa0143980:intron 40.0%
!!! CATCCTTTGAGCTAGCTTTT+GGG - chr1_4:3242693-3242712 None:intergenic 40.0%
!!! TCATCCTTTGAGCTAGCTTT+TGG - chr1_4:3242694-3242713 None:intergenic 40.0%
AAAAGCTAGCTCAAAGGATG+AGG + chr1_4:3242693-3242712 Msa0143980:intron 40.0%
! CTTTTATACAGCTAACAGCC+CGG + chr1_4:3242727-3242746 Msa0143980:intron 40.0%
! TTTTATACAGCTAACAGCCC+GGG + chr1_4:3242728-3242747 Msa0143980:intron 40.0%
AGACCATATCCTTGACCTAT+TGG - chr1_4:3243049-3243068 None:intergenic 40.0%
ATAAATGAGCAAGGAAGAGG+AGG - chr1_4:3243136-3243155 None:intergenic 40.0%
CCAATTACAATTTCTCCACG+AGG - chr1_4:3243697-3243716 None:intergenic 40.0%
CCTCGTGGAGAAATTGTAAT+TGG + chr1_4:3243694-3243713 Msa0143980:CDS 40.0%
CGTGGAGAAATTGTAATTGG+TGG + chr1_4:3243697-3243716 Msa0143980:CDS 40.0%
!! ATTATTTTCTTGGTGCGGCT+AGG + chr1_4:3244078-3244097 Msa0143980:intron 40.0%
ATAGGGAGGTTTCATCAAGA+TGG + chr1_4:3244139-3244158 Msa0143980:CDS 40.0%
GACATTGTTAAACTGCAGCA+TGG + chr1_4:3244190-3244209 Msa0143980:CDS 40.0%
! CATGGAGAGTATGTTTCCTT+GGG + chr1_4:3244208-3244227 Msa0143980:CDS 40.0%
AGAGTATGTTTCCTTGGGAA+AGG + chr1_4:3244213-3244232 Msa0143980:CDS 40.0%
TCTTATTGTCAGCTCCTATG+TGG + chr1_4:3244763-3244782 Msa0143980:CDS 40.0%
CCACACAGTAACTATGGAAA+GGG - chr1_4:3244811-3244830 None:intergenic 40.0%
TCAGTCCACATTGGAAGAAT+GGG + chr1_4:3244847-3244866 Msa0143980:CDS 40.0%
! GAAGAATGGGCTTCAAATCA+AGG + chr1_4:3244860-3244879 Msa0143980:CDS 40.0%
CATCATGGATTCTTAAGGGT+AGG - chr1_4:3245271-3245290 None:intergenic 40.0%
CTACCCTTAAGAATCCATGA+TGG + chr1_4:3245269-3245288 Msa0143980:intron 40.0%
GGATCCATCATGGATTCTTA+AGG - chr1_4:3245276-3245295 None:intergenic 40.0%
GTTAGTAGTAGGATCCATCA+TGG - chr1_4:3245286-3245305 None:intergenic 40.0%
TAAGGGAACAAACAGATTGC+AGG - chr1_4:3245435-3245454 None:intergenic 40.0%
TTCCTGGAAAGTCTTTCTGA+CGG - chr1_4:3245624-3245643 None:intergenic 40.0%
! GAACAGAAGATTTGCTTCGC+CGG + chr1_4:3238646-3238665 Msa0143980:CDS 45.0%
! AGAAGCATGCAGGAAGCATA+CGG + chr1_4:3238715-3238734 Msa0143980:CDS 45.0%
GCATACGGAGAGATTACTGT+TGG + chr1_4:3238730-3238749 Msa0143980:CDS 45.0%
TCGAAGGAAATGGAGAAGAG+TGG + chr1_4:3238770-3238789 Msa0143980:CDS 45.0%
AAGGAAATGGAGAAGAGTGG+TGG + chr1_4:3238773-3238792 Msa0143980:CDS 45.0%
!! GGTGTTGTGAGATTTGCTAG+TGG + chr1_4:3238869-3238888 Msa0143980:CDS 45.0%
ATGGAAAGGATGAGAGGGTT+GGG + chr1_4:3238909-3238928 Msa0143980:CDS 45.0%
TTGCTGATACTAGGGTTGAG+TGG + chr1_4:3238936-3238955 Msa0143980:CDS 45.0%
! TTCTGCTTCAGGGTTGTTTC+AGG + chr1_4:3240186-3240205 Msa0143980:intron 45.0%
GATGTATGCATCATTGGGAG+AGG + chr1_4:3240229-3240248 Msa0143980:CDS 45.0%
GAGGTCACGACAGTAATTTG+TGG + chr1_4:3240411-3240430 Msa0143980:CDS 45.0%
! CAACAGATGAGGCATCAGAT+GGG - chr1_4:3240518-3240537 None:intergenic 45.0%
TATCCTTGAACTAGCAGCTG+AGG + chr1_4:3241234-3241253 Msa0143980:CDS 45.0%
ATACCTCAGCTGCTAGTTCA+AGG - chr1_4:3241240-3241259 None:intergenic 45.0%
ACTAGCAGCTGAGGTATGTA+AGG + chr1_4:3241243-3241262 Msa0143980:intron 45.0%
CTAGCAGCTGAGGTATGTAA+GGG + chr1_4:3241244-3241263 Msa0143980:intron 45.0%
TAGCAGCTGAGGTATGTAAG+GGG + chr1_4:3241245-3241264 Msa0143980:intron 45.0%
GATGTATCTGTGAGGGTCAA+AGG - chr1_4:3241425-3241444 None:intergenic 45.0%
GGTACAGCAGCCAATAAAGT+TGG - chr1_4:3241494-3241513 None:intergenic 45.0%
GAAGCATATGAGATAGGTGG+AGG - chr1_4:3241585-3241604 None:intergenic 45.0%
AAGGGAAGTTTGGATGCAAC+TGG - chr1_4:3241625-3241644 None:intergenic 45.0%
GCCAATGTAGGTGAATGCAA+CGG + chr1_4:3241977-3241996 Msa0143980:intron 45.0%
CCAATGTAGGTGAATGCAAC+GGG + chr1_4:3241978-3241997 Msa0143980:intron 45.0%
TGCTTTCAACCTCCTCTCAT+AGG - chr1_4:3242033-3242052 None:intergenic 45.0%
GCAGTTAATGGAAGCTGGTT+TGG + chr1_4:3242050-3242069 Msa0143980:CDS 45.0%
ATCCGTTTCATACTGTCTGG+TGG + chr1_4:3242146-3242165 Msa0143980:CDS 45.0%
CACCACCAGACAGTATGAAA+CGG - chr1_4:3242151-3242170 None:intergenic 45.0%
TGCTGAGTATCACCAGAAAG+GGG - chr1_4:3242176-3242195 None:intergenic 45.0%
CTGCTGAGTATCACCAGAAA+GGG - chr1_4:3242177-3242196 None:intergenic 45.0%
ACTGCTGAGTATCACCAGAA+AGG - chr1_4:3242178-3242197 None:intergenic 45.0%
CGTGATTTCTCTCCAACCAT+AGG + chr1_4:3242421-3242440 Msa0143980:intron 45.0%
CTGGTCCTCTAATGCTCAAT+CGG - chr1_4:3242592-3242611 None:intergenic 45.0%
CATCCCAAAAGCTAGCTCAA+AGG + chr1_4:3242687-3242706 Msa0143980:intron 45.0%
! TTTGGAGTCCCACATTGCTA+AGG - chr1_4:3242756-3242775 None:intergenic 45.0%
GCAATGTGGGAATTGAACTC+AGG - chr1_4:3242818-3242837 None:intergenic 45.0%
GTCATTTCCAGTGCTCCAAT+AGG + chr1_4:3243031-3243050 Msa0143980:intron 45.0%
GCTCCAATAGGTCAAGGATA+TGG + chr1_4:3243043-3243062 Msa0143980:CDS 45.0%
ACAATTTCTCCACGAGGCAT+TGG - chr1_4:3243691-3243710 None:intergenic 45.0%
GAACTATATCTGTCCACGAC+AGG + chr1_4:3243860-3243879 Msa0143980:intron 45.0%
!! TGCGGCTAGGTTGATGAAAA+AGG + chr1_4:3244091-3244110 Msa0143980:intron 45.0%
! GGAATGAGATGGTTCTACAC+TGG + chr1_4:3244112-3244131 Msa0143980:CDS 45.0%
! TGGTTCTACACTGGTGACAT+AGG + chr1_4:3244121-3244140 Msa0143980:CDS 45.0%
GGTTCTACACTGGTGACATA+GGG + chr1_4:3244122-3244141 Msa0143980:CDS 45.0%
! GCATGGAGAGTATGTTTCCT+TGG + chr1_4:3244207-3244226 Msa0143980:CDS 45.0%
CCCTTTCCATAGTTACTGTG+TGG + chr1_4:3244808-3244827 Msa0143980:CDS 45.0%
GCCACACAGTAACTATGGAA+AGG - chr1_4:3244812-3244831 None:intergenic 45.0%
CAAGTGCCACACAGTAACTA+TGG - chr1_4:3244817-3244836 None:intergenic 45.0%
! TTACTGTGTGGCACTTGTTG+TGG + chr1_4:3244820-3244839 Msa0143980:CDS 45.0%
CTCAGTCCACATTGGAAGAA+TGG + chr1_4:3244846-3244865 Msa0143980:CDS 45.0%
TGAAGCCCATTCTTCCAATG+TGG - chr1_4:3244855-3244874 None:intergenic 45.0%
GGTGCATGCATCACTAGTAA+AGG + chr1_4:3244937-3244956 Msa0143980:CDS 45.0%
GGAAGCAAAGAAAGCTCGTT+TGG + chr1_4:3245502-3245521 Msa0143980:intron 45.0%
AACAGGAGAGTTGCGAGGAT+GGG - chr1_4:3238554-3238573 None:intergenic 50.0%
CGGAGTTTACTGGAACTCCA+CGG - chr1_4:3238598-3238617 None:intergenic 50.0%
TGGAGTTCCAGTAAACTCCG+CGG + chr1_4:3238598-3238617 Msa0143980:CDS 50.0%
ATCAAGGTGGTGTGACAGTG+CGG + chr1_4:3238624-3238643 Msa0143980:CDS 50.0%
GTGGGAAGGAGTGAGTACAT+TGG + chr1_4:3238679-3238698 Msa0143980:CDS 50.0%
GGAAGGAGTGAGTACATTGG+CGG + chr1_4:3238682-3238701 Msa0143980:CDS 50.0%
! ATGGAGAAGAGTGGTGGTGA+TGG + chr1_4:3238779-3238798 Msa0143980:CDS 50.0%
! TGCTAGTGGTTTGGCTGTGT+TGG + chr1_4:3238883-3238902 Msa0143980:CDS 50.0%
! GCTAGTGGTTTGGCTGTGTT+GGG + chr1_4:3238884-3238903 Msa0143980:CDS 50.0%
TGGGACATGGAAAGGATGAG+AGG + chr1_4:3238903-3238922 Msa0143980:CDS 50.0%
GGGACATGGAAAGGATGAGA+GGG + chr1_4:3238904-3238923 Msa0143980:CDS 50.0%
CATGGAAAGGATGAGAGGGT+TGG + chr1_4:3238908-3238927 Msa0143980:CDS 50.0%
TGAGTGGTTCCTTGCTCTTC+AGG + chr1_4:3238952-3238971 Msa0143980:CDS 50.0%
! CCAACAGATGAGGCATCAGA+TGG - chr1_4:3240519-3240538 None:intergenic 50.0%
CCATCTGATGCCTCATCTGT+TGG + chr1_4:3240516-3240535 Msa0143980:CDS 50.0%
GATGCCTCATCTGTTGGACA+CGG + chr1_4:3240522-3240541 Msa0143980:CDS 50.0%
GCAGCAGTTGGGATACCTAT+AGG + chr1_4:3241389-3241408 Msa0143980:CDS 50.0%
CGAACACGGTCAAGAATTGC+TGG - chr1_4:3241515-3241534 None:intergenic 50.0%
ATTCTTGACCGTGTTCGCGA+TGG + chr1_4:3241518-3241537 Msa0143980:CDS 50.0%
TGAACACTCCATCGCGAACA+CGG - chr1_4:3241529-3241548 None:intergenic 50.0%
! TCGCGATGGAGTGTTCAAGA+AGG + chr1_4:3241532-3241551 Msa0143980:CDS 50.0%
CCCGTTGCATTCACCTACAT+TGG - chr1_4:3241981-3242000 None:intergenic 50.0%
ATGTAGGTGAATGCAACGGG+AGG + chr1_4:3241981-3242000 Msa0143980:intron 50.0%
TGCGACCACCAAGAATTGCT+CGG - chr1_4:3242127-3242146 None:intergenic 50.0%
CGCATCCGTTTCATACTGTC+TGG + chr1_4:3242143-3242162 Msa0143980:CDS 50.0%
ACTGTACGCGCAGATATGTC+AGG + chr1_4:3242458-3242477 Msa0143980:intron 50.0%
TCCCACATTGCTAAGGTTCC+CGG - chr1_4:3242749-3242768 None:intergenic 50.0%
TCCAGTGCTCCAATAGGTCA+AGG + chr1_4:3243037-3243056 Msa0143980:intron 50.0%
TCCTTGACCTATTGGAGCAC+TGG - chr1_4:3243041-3243060 None:intergenic 50.0%
GGTCTTACAGAGACTTGTGC+TGG + chr1_4:3243064-3243083 Msa0143980:CDS 50.0%
CTTACAGAGACTTGTGCTGG+TGG + chr1_4:3243067-3243086 Msa0143980:CDS 50.0%
GATACATCTGTTGGCCGTGT+TGG + chr1_4:3243109-3243128 Msa0143980:CDS 50.0%
AAGGAAGAGGAGGTCCAACA+CGG - chr1_4:3243126-3243145 None:intergenic 50.0%
!! TAGCTAATCGACTGGCCTGA+AGG + chr1_4:3243643-3243662 Msa0143980:intron 50.0%
GGTGGTCCAAATGTCACTCT+TGG + chr1_4:3243715-3243734 Msa0143980:CDS 50.0%
TCTACACTGGTGACATAGGG+AGG + chr1_4:3244125-3244144 Msa0143980:CDS 50.0%
TGTGGCTTCTCAGTCCACAT+TGG + chr1_4:3244838-3244857 Msa0143980:CDS 50.0%
TCGCCCACGTCAATCTTCAA+CGG + chr1_4:3245327-3245346 Msa0143980:intron 50.0%
CCACCGTTGAAGATTGACGT+GGG - chr1_4:3245333-3245352 None:intergenic 50.0%
TCCACCGTTGAAGATTGACG+TGG - chr1_4:3245334-3245353 None:intergenic 50.0%
TGCTCTCAAGCTCAAGAGAG+AGG + chr1_4:3245598-3245617 Msa0143980:CDS 50.0%
! TGCGAGGATGGGGAGTATGA+TGG - chr1_4:3238543-3238562 None:intergenic 55.0%
ACAGGAGAGTTGCGAGGATG+GGG - chr1_4:3238553-3238572 None:intergenic 55.0%
GAACAGGAGAGTTGCGAGGA+TGG - chr1_4:3238555-3238574 None:intergenic 55.0%
TAGGGTGGTTAGTGCGGAAC+AGG - chr1_4:3238571-3238590 None:intergenic 55.0%
! GGCGTTTAGGGTGGTTAGTG+CGG - chr1_4:3238577-3238596 None:intergenic 55.0%
ACTAACCACCCTAAACGCCG+TGG + chr1_4:3238578-3238597 Msa0143980:CDS 55.0%
CTGGAACTCCACGGCGTTTA+GGG - chr1_4:3238589-3238608 None:intergenic 55.0%
ACTGGAACTCCACGGCGTTT+AGG - chr1_4:3238590-3238609 None:intergenic 55.0%
TGATCGTCCGCGGAGTTTAC+TGG - chr1_4:3238608-3238627 None:intergenic 55.0%
GTAAACTCCGCGGACGATCA+AGG + chr1_4:3238608-3238627 Msa0143980:CDS 55.0%
! CAGAAGATTTGCTTCGCCGG+TGG + chr1_4:3238649-3238668 Msa0143980:CDS 55.0%
ATTTGCTTCGCCGGTGGAGA+CGG + chr1_4:3238655-3238674 Msa0143980:CDS 55.0%
!! GAGAAGAGTGGTGGTGATGG+TGG + chr1_4:3238782-3238801 Msa0143980:CDS 55.0%
GGTTTGGCTGTGTTGGGACA+TGG + chr1_4:3238890-3238909 Msa0143980:CDS 55.0%
GGCTGTGTTGGGACATGGAA+AGG + chr1_4:3238895-3238914 Msa0143980:CDS 55.0%
ACTGCAACATCAGCTGGGAG+AGG - chr1_4:3240615-3240634 None:intergenic 55.0%
!! ATGGAAGCTGGTTTGGAGCC+TGG + chr1_4:3242057-3242076 Msa0143980:CDS 55.0%
!! TGGAAGCTGGTTTGGAGCCT+GGG + chr1_4:3242058-3242077 Msa0143980:CDS 55.0%
CCCACATTGCTAAGGTTCCC+GGG - chr1_4:3242748-3242767 None:intergenic 55.0%
CCCGGGAACCTTAGCAATGT+GGG + chr1_4:3242745-3242764 Msa0143980:intron 55.0%
TCAATAGCCACCCTCACACC+TGG + chr1_4:3242786-3242805 Msa0143980:intron 55.0%
!! CTAATCGACTGGCCTGAAGG+TGG + chr1_4:3243646-3243665 Msa0143980:CDS 55.0%
AATGACTCGCCAATGCCTCG+TGG + chr1_4:3243679-3243698 Msa0143980:CDS 55.0%
CCCACGTCAATCTTCAACGG+TGG + chr1_4:3245330-3245349 Msa0143980:intron 55.0%
GATCCATGGACACCTGAGTC+TGG + chr1_4:3245563-3245582 Msa0143980:CDS 55.0%
AAGCCAGACTCAGGTGTCCA+TGG - chr1_4:3245569-3245588 None:intergenic 55.0%
GCAGTGACTAAGCCAGACTC+AGG - chr1_4:3245578-3245597 None:intergenic 55.0%
GGCCGTCAGAAAGACTTTCC+AGG + chr1_4:3245619-3245638 Msa0143980:CDS 55.0%
TGCGGAACAGGAGAGTTGCG+AGG - chr1_4:3238559-3238578 None:intergenic 60.0%
GAACTCCACGGCGTTTAGGG+TGG - chr1_4:3238586-3238605 None:intergenic 60.0%
AACTCCGCGGACGATCAAGG+TGG + chr1_4:3238611-3238630 Msa0143980:CDS 60.0%
CACACCACCTTGATCGTCCG+CGG - chr1_4:3238618-3238637 None:intergenic 60.0%
CCAGCCGTGTCCAACAGATG+AGG - chr1_4:3240529-3240548 None:intergenic 60.0%
CCTCATCTGTTGGACACGGC+TGG + chr1_4:3240526-3240545 Msa0143980:CDS 60.0%
!! GGAAGCTGGTTTGGAGCCTG+GGG + chr1_4:3242059-3242078 Msa0143980:CDS 60.0%
GGGCTTGGAGAAGGCTCTCT+GGG + chr1_4:3242079-3242098 Msa0143980:CDS 60.0%
! TCTGGTGGTGCTCCCCTTTC+TGG + chr1_4:3242161-3242180 Msa0143980:CDS 60.0%
GCCCGGGAACCTTAGCAATG+TGG + chr1_4:3242744-3242763 Msa0143980:intron 60.0%
ATTGAACTCAGGCCCACGCC+AGG - chr1_4:3242807-3242826 None:intergenic 60.0%
!! CTGGTTTGGAGCCTGGGGCT+TGG + chr1_4:3242064-3242083 Msa0143980:CDS 65.0%
TGGAGCCTGGGGCTTGGAGA+AGG + chr1_4:3242070-3242089 Msa0143980:CDS 65.0%
GAGAGCCTTCTCCAAGCCCC+AGG - chr1_4:3242078-3242097 None:intergenic 65.0%
GGGGCTTGGAGAAGGCTCTC+TGG + chr1_4:3242078-3242097 Msa0143980:CDS 65.0%
TTCGCCGGTGGAGACGGCGT+GGG + chr1_4:3238661-3238680 Msa0143980:CDS 70.0%
CCTTCCCACGCCGTCTCCAC+CGG - chr1_4:3238668-3238687 None:intergenic 70.0%
AGCCACCCTCACACCTGGCG+TGG + chr1_4:3242791-3242810 Msa0143980:intron 70.0%
GCCACCCTCACACCTGGCGT+GGG + chr1_4:3242792-3242811 Msa0143980:intron 70.0%
CAGGCCCACGCCAGGTGTGA+GGG - chr1_4:3242799-3242818 None:intergenic 70.0%
TCAGGCCCACGCCAGGTGTG+AGG - chr1_4:3242800-3242819 None:intergenic 70.0%
CTTCGCCGGTGGAGACGGCG+TGG + chr1_4:3238660-3238679 Msa0143980:CDS 75.0%
CCGGTGGAGACGGCGTGGGA+AGG + chr1_4:3238665-3238684 Msa0143980:CDS 75.0%
GCCCACGCCAGGTGTGAGGG+TGG - chr1_4:3242796-3242815 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 3238389 3245863 3238389 ID=Msa0143980;Name=Msa0143980
chr1_4 mRNA 3238389 3245863 3238389 ID=Msa0143980-mRNA-1;Parent=Msa0143980;Name=Msa0143980-mRNA-1;_AED=0.04;_eAED=0.04;_QI=132|0.9|0.90|1|1|1|11|193|687
chr1_4 exon 3238389 3238973 3238389 ID=Msa0143980-mRNA-1:exon:1355;Parent=Msa0143980-mRNA-1
chr1_4 exon 3240197 3240277 3240197 ID=Msa0143980-mRNA-1:exon:1356;Parent=Msa0143980-mRNA-1
chr1_4 exon 3240408 3240640 3240408 ID=Msa0143980-mRNA-1:exon:1357;Parent=Msa0143980-mRNA-1
chr1_4 exon 3241123 3241255 3241123 ID=Msa0143980-mRNA-1:exon:1358;Parent=Msa0143980-mRNA-1
chr1_4 exon 3241380 3241553 3241380 ID=Msa0143980-mRNA-1:exon:1359;Parent=Msa0143980-mRNA-1
chr1_4 exon 3241987 3242216 3241987 ID=Msa0143980-mRNA-1:exon:1360;Parent=Msa0143980-mRNA-1
chr1_4 exon 3243042 3243159 3243042 ID=Msa0143980-mRNA-1:exon:1361;Parent=Msa0143980-mRNA-1
chr1_4 exon 3243646 3243777 3243646 ID=Msa0143980-mRNA-1:exon:1362;Parent=Msa0143980-mRNA-1
chr1_4 exon 3244100 3244234 3244100 ID=Msa0143980-mRNA-1:exon:1363;Parent=Msa0143980-mRNA-1
chr1_4 exon 3244752 3244958 3244752 ID=Msa0143980-mRNA-1:exon:1364;Parent=Msa0143980-mRNA-1
chr1_4 exon 3245503 3245863 3245503 ID=Msa0143980-mRNA-1:exon:1365;Parent=Msa0143980-mRNA-1
chr1_4 five_prime_UTR 3238389 3238520 3238389 ID=Msa0143980-mRNA-1:five_prime_utr;Parent=Msa0143980-mRNA-1
chr1_4 CDS 3238521 3238973 3238521 ID=Msa0143980-mRNA-1:cds;Parent=Msa0143980-mRNA-1
chr1_4 CDS 3240197 3240277 3240197 ID=Msa0143980-mRNA-1:cds;Parent=Msa0143980-mRNA-1
chr1_4 CDS 3240408 3240640 3240408 ID=Msa0143980-mRNA-1:cds;Parent=Msa0143980-mRNA-1
chr1_4 CDS 3241123 3241255 3241123 ID=Msa0143980-mRNA-1:cds;Parent=Msa0143980-mRNA-1
chr1_4 CDS 3241380 3241553 3241380 ID=Msa0143980-mRNA-1:cds;Parent=Msa0143980-mRNA-1
chr1_4 CDS 3241987 3242216 3241987 ID=Msa0143980-mRNA-1:cds;Parent=Msa0143980-mRNA-1
chr1_4 CDS 3243042 3243159 3243042 ID=Msa0143980-mRNA-1:cds;Parent=Msa0143980-mRNA-1
chr1_4 CDS 3243646 3243777 3243646 ID=Msa0143980-mRNA-1:cds;Parent=Msa0143980-mRNA-1
chr1_4 CDS 3244100 3244234 3244100 ID=Msa0143980-mRNA-1:cds;Parent=Msa0143980-mRNA-1
chr1_4 CDS 3244752 3244958 3244752 ID=Msa0143980-mRNA-1:cds;Parent=Msa0143980-mRNA-1
chr1_4 CDS 3245503 3245670 3245503 ID=Msa0143980-mRNA-1:cds;Parent=Msa0143980-mRNA-1
chr1_4 three_prime_UTR 3245671 3245863 3245671 ID=Msa0143980-mRNA-1:three_prime_utr;Parent=Msa0143980-mRNA-1
Gene Sequence

>Msa0143980

ATGAATCCCTACATTGTCACCATCATACTCCCCATCCTCGCAACTCTCCTGTTCCGCACTAACCACCCTAAACGCCGTGGAGTTCCAGTAAACTCCGCGGACGATCAAGGTGGTGTGACAGTGCGGAACAGAAGATTTGCTTCGCCGGTGGAGACGGCGTGGGAAGGAGTGAGTACATTGGCGGAATTGTTTGAAGAAGCATGCAGGAAGCATACGGAGAGATTACTGTTGGGAACAAGAGTGGTTGTTTCGAAGGAAATGGAGAAGAGTGGTGGTGATGGTGGAAAAGTTTTTGAGAAAGTTGAATTGGGTGAGTATGAATGGTTATCGTATGATGAAGCTTTTGATGGTGTTGTGAGATTTGCTAGTGGTTTGGCTGTGTTGGGACATGGAAAGGATGAGAGGGTTGGGATTTTTGCTGATACTAGGGTTGAGTGGTTCCTTGCTCTTCAGGGTTGTTTCAGGCGAAATGTGACAGTTGTAACGATGTATGCATCATTGGGAGAGGAAGCTTTATGTCACTCATTGAATGAGACAGAGGTCACGACAGTAATTTGTGGGCAGAAAGAATTGAAAACACTTGTAAATATTAGCGGACAACTTGACTCAGTGAAACGTGTGATATGCATGGATGATGATATCCCATCTGATGCCTCATCTGTTGGACACGGCTGGACAATCATATCCTTTGCAGATGTTAAGCGACTTGGTAAAGAAAAGCCTGTTGATGCTGATTTACCTCTCCCAGCTGATGTTGCAGTTATCATGGGTGTGATGATGACACATGCTAATGTTTTAGCTACGCTCTCTGCTGTGAAGATGATTGTTCCCAAACTTGAGAAAAAGGATGTATATCTAGCATACTTGCCAATGGCTCATATCCTTGAACTAGCAGCTGAGAATTTGATGGCAGCAGTTGGGATACCTATAGGATATGGATCTCCTTTGACCCTCACAGATACATCAAGCAAGATAAAGAAAGGAACAAAGGGGGATGCTACTGTGTTGATGCCAACTTTATTGGCTGCTGTACCAGCAATTCTTGACCGTGTTCGCGATGGAGTGTTCAAGAAGGTGAATGCAACGGGAGGATTACCAAAAAAGTTGTTTTATTTAGCCTATGAGAGGAGGTTGAAAGCAGTTAATGGAAGCTGGTTTGGAGCCTGGGGCTTGGAGAAGGCTCTCTGGGATTTTCTTGTGTTTAAAAAAATCCGAGCAATTCTTGGTGGTCGCATCCGTTTCATACTGTCTGGTGGTGCTCCCCTTTCTGGTGATACTCAGCAGTTCATCAATATCTGTCTTGGTGCTCCAATAGGTCAAGGATATGGTCTTACAGAGACTTGTGCTGGTGGAACATTCTCTGATTTTGATGATACATCTGTTGGCCGTGTTGGACCTCCTCTTCCTTGCTCATTTATTAAGCTAATCGACTGGCCTGAAGGTGGATATTTAACTAATGACTCGCCAATGCCTCGTGGAGAAATTGTAATTGGTGGTCCAAATGTCACTCTTGGTTACTTCAAGAATGAAGAAAAGACAAAAGAATCATACAAGGTTGATGAAAAAGGAATGAGATGGTTCTACACTGGTGACATAGGGAGGTTTCATCAAGATGGTTGCCTAGAAATCATTGATCGTAAAAAGGACATTGTTAAACTGCAGCATGGAGAGTATGTTTCCTTGGGAAAGGTTGAGGCAGCTCTTATTGTCAGCTCCTATGTGGACAATATAATGTTGCATGCTGACCCTTTCCATAGTTACTGTGTGGCACTTGTTGTGGCTTCTCAGTCCACATTGGAAGAATGGGCTTCAAATCAAGGAATTCCTTATTCAGGTTTTTCAGAACTTTGCTCTAAAGAAGAAAGCATCAAGGAGGTGCATGCATCACTAGTAAAGGAAGCAAAGAAAGCTCGTTTGGAGAAATTTGAGATTCCAACAAAAATTAAATTGCTTTCTGATCCATGGACACCTGAGTCTGGCTTAGTCACTGCTGCTCTCAAGCTCAAGAGAGAGGCCGTCAGAAAGACTTTCCAGGAAGATCTTCTGAAGTTATACGCTTCATAG
Protein sequence

>Msa0143980

MNPYIVTIILPILATLLFRTNHPKRRGVPVNSADDQGGVTVRNRRFASPVETAWEGVSTLAELFEEACRKHTERLLLGTRVVVSKEMEKSGGDGGKVFEKVELGEYEWLSYDEAFDGVVRFASGLAVLGHGKDERVGIFADTRVEWFLALQGCFRRNVTVVTMYASLGEEALCHSLNETEVTTVICGQKELKTLVNISGQLDSVKRVICMDDDIPSDASSVGHGWTIISFADVKRLGKEKPVDADLPLPADVAVIMGVMMTHANVLATLSAVKMIVPKLEKKDVYLAYLPMAHILELAAENLMAAVGIPIGYGSPLTLTDTSSKIKKGTKGDATVLMPTLLAAVPAILDRVRDGVFKKVNATGGLPKKLFYLAYERRLKAVNGSWFGAWGLEKALWDFLVFKKIRAILGGRIRFILSGGAPLSGDTQQFINICLGAPIGQGYGLTETCAGGTFSDFDDTSVGRVGPPLPCSFIKLIDWPEGGYLTNDSPMPRGEIVIGGPNVTLGYFKNEEKTKESYKVDEKGMRWFYTGDIGRFHQDGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSSYVDNIMLHADPFHSYCVALVVASQSTLEEWASNQGIPYSGFSELCSKEESIKEVHASLVKEAKKARLEKFEIPTKIKLLSDPWTPESGLVTAALKLKREAVRKTFQEDLLKLYAS*