AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0539320


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0539320 MtrunA17_Chr4g0014501 94.521 73 4 0 1 73 1 73 8.64e-45 141
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 51 sgRNAs with CRISPR-Local

Find 182 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGGAACAATTTAAGTAAATT+AGG 0.197434 4_1:+20144271 Msa0539320:five_prime_UTR
TGCTTTGGCTGCCAAGGATT+TGG 0.205335 4_1:+20145523 Msa0539320:CDS
TATCTTTCTCCTGTTTGCTC+TGG 0.298208 4_1:-20145586 None:intergenic
CAACCCTCCCTTTCCACAGC+TGG 0.299373 4_1:-20145560 None:intergenic
ATCTTTCTCCTGTTTGCTCT+GGG 0.318750 4_1:-20145585 None:intergenic
GCTTTGGCTGCCAAGGATTT+GGG 0.347571 4_1:+20145524 Msa0539320:CDS
AAAAGGATTCTCATTTAATT+CGG 0.355730 4_1:+20144518 Msa0539320:CDS
GCAAAGAAATGGATAATAAG+AGG 0.358111 4_1:-20144320 None:intergenic
AACCCTCCCTTTCCACAGCT+GGG 0.382418 4_1:-20145559 None:intergenic
ATAATTCTTGTCAGTGTGAT+TGG 0.420699 4_1:-20144459 None:intergenic
TTTGATAGGATTATGAAAAT+CGG 0.423246 4_1:+20144251 Msa0539320:five_prime_UTR
CATAATCCTATCAAAGCTAA+AGG 0.438553 4_1:-20144243 None:intergenic
ATCACTACTTCTGCTTCAAA+AGG 0.440521 4_1:+20144501 Msa0539320:CDS
GTGTGTATCTTGCAAAGAAA+TGG 0.451171 4_1:-20144331 None:intergenic
ATCTCTGTTTGTTGCTACAA+TGG 0.457545 4_1:+20144393 Msa0539320:CDS
CATCGAATGTCCAGGATGTA+AGG 0.459912 4_1:+20145060 Msa0539320:CDS
GACACACCTTTAGCTTTGAT+AGG 0.462219 4_1:+20144237 None:intergenic
GGAGCTTTATGAAGAAAAGT+TGG 0.472718 4_1:-20144429 None:intergenic
GTAAAAGTTGCGAAGGCAAA+GGG 0.485475 4_1:+20145035 Msa0539320:CDS
CAACCACTGATCACATTCAC+AGG 0.489081 4_1:+20144355 Msa0539320:five_prime_UTR
GTATGATGGTATAGATGCTT+TGG 0.489880 4_1:+20145508 Msa0539320:intron
AATAATACCACCTTACATCC+TGG 0.499547 4_1:-20145070 None:intergenic
AACTGATCAACCCAAATCCT+TGG 0.501483 4_1:-20145534 None:intergenic
GTCAGTGTGATTGGTTGAAG+TGG 0.502833 4_1:-20144450 None:intergenic
TTTACTAGAGTGAAGAATGC+GGG 0.508425 4_1:+20145637 Msa0539320:exon
AGTTGCCCCAGCTGTGGAAA+GGG 0.528411 4_1:+20145553 Msa0539320:CDS
TGCCCCAGCTGTGGAAAGGG+AGG 0.538968 4_1:+20145556 Msa0539320:CDS
TATAGATGCTTTGGCTGCCA+AGG 0.541351 4_1:+20145517 Msa0539320:intron
CAAAGAAATGGATAATAAGA+GGG 0.541654 4_1:-20144319 None:intergenic
ATAAATGACTTGGATTGCCA+TGG 0.554012 4_1:-20145746 None:intergenic
AAAGGGGCCATCGAATGTCC+AGG 0.555320 4_1:+20145052 Msa0539320:CDS
TAAACTCATAATAAATGACT+TGG 0.558961 4_1:-20145756 None:intergenic
CAGTTGCCCCAGCTGTGGAA+AGG 0.560915 4_1:+20145552 Msa0539320:CDS
AAAAGTTGTAAAAGTTGCGA+AGG 0.564737 4_1:+20145028 Msa0539320:CDS
TAGAGTGAAGAATGCGGGGA+TGG 0.575222 4_1:+20145642 Msa0539320:exon
GCTTTATGAAGAAAAGTTGG+TGG 0.576508 4_1:-20144426 None:intergenic
TCTTTCTCCTGTTTGCTCTG+GGG 0.576960 4_1:-20145584 None:intergenic
GGGTTGACCCCAGAGCAAAC+AGG 0.577880 4_1:+20145577 Msa0539320:CDS
CTTACATCCTGGACATTCGA+TGG 0.580457 4_1:-20145059 None:intergenic
TGTAAAAGTTGCGAAGGCAA+AGG 0.583122 4_1:+20145034 Msa0539320:CDS
TTCCCTGTGAATGTGATCAG+TGG 0.583301 4_1:-20144358 None:intergenic
ACCCTCCCTTTCCACAGCTG+GGG 0.589769 4_1:-20145558 None:intergenic
ATAAGAGGGTTTGTCACGTG+TGG 0.607980 4_1:-20144305 None:intergenic
GCCCCAGCTGTGGAAAGGGA+GGG 0.610418 4_1:+20145557 Msa0539320:CDS
TTGATCAGTTGCCCCAGCTG+TGG 0.611692 4_1:+20145547 Msa0539320:CDS
ATTGTAGCAACAAACAGAGA+TGG 0.617721 4_1:-20144391 None:intergenic
TTGTTGCTACAATGGTGCTG+TGG 0.639295 4_1:+20144401 Msa0539320:CDS
TTACTAGAGTGAAGAATGCG+GGG 0.661098 4_1:+20145638 Msa0539320:exon
GTAGCAACAAACAGAGATGG+AGG 0.667885 4_1:-20144388 None:intergenic
AACCACTGATCACATTCACA+GGG 0.683803 4_1:+20144356 Msa0539320:five_prime_UTR
TAAAAGTTGCGAAGGCAAAG+GGG 0.722942 4_1:+20145036 Msa0539320:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TACTAATGTATAAATTGTTT+AGG - chr4_1:20145122-20145141 None:intergenic 15.0%
!!! TTATGTTTTGATAATTTACA+AGG + chr4_1:20145705-20145724 Msa0539320:three_prime_UTR 15.0%
!! TACTAATGTATAAATTGTTT+AGG - chr4_1:20145122-20145141 None:intergenic 15.0%
!!! TTATGTTTTGATAATTTACA+AGG + chr4_1:20145705-20145724 Msa0539320:three_prime_UTR 15.0%
!! TTTGATAGGATTATGAAAAT+CGG + chr4_1:20144251-20144270 Msa0539320:five_prime_UTR 20.0%
!! AAAAGGATTCTCATTTAATT+CGG + chr4_1:20144518-20144537 Msa0539320:CDS 20.0%
!! TATACCTTATACAAACTATA+TGG + chr4_1:20144548-20144567 Msa0539320:intron 20.0%
!!! AAAACCATATAGTTTGTATA+AGG - chr4_1:20144555-20144574 None:intergenic 20.0%
!!! TCAGATGAAACAATTTTAAT+CGG + chr4_1:20144931-20144950 Msa0539320:intron 20.0%
!!! ATTGTTTAGGATTTAATTTG+TGG - chr4_1:20145109-20145128 None:intergenic 20.0%
!!! AGCTATGTTTTTAATTTGAA+TGG + chr4_1:20145177-20145196 Msa0539320:intron 20.0%
!! ATTTGAATGGTTGTTTAATT+TGG + chr4_1:20145190-20145209 Msa0539320:intron 20.0%
!! ATCATACTATTGTATTAGAA+AGG - chr4_1:20145495-20145514 None:intergenic 20.0%
!! TTTCTAATACAATAGTATGA+TGG + chr4_1:20145494-20145513 Msa0539320:intron 20.0%
!! AAAAAGAAAAATAGAAACCA+TGG + chr4_1:20145729-20145748 Msa0539320:three_prime_UTR 20.0%
!! TAAACTCATAATAAATGACT+TGG - chr4_1:20145759-20145778 None:intergenic 20.0%
!! TTTGATAGGATTATGAAAAT+CGG + chr4_1:20144251-20144270 Msa0539320:five_prime_UTR 20.0%
!! AAAAGGATTCTCATTTAATT+CGG + chr4_1:20144518-20144537 Msa0539320:CDS 20.0%
!! TATACCTTATACAAACTATA+TGG + chr4_1:20144548-20144567 Msa0539320:intron 20.0%
!!! AAAACCATATAGTTTGTATA+AGG - chr4_1:20144555-20144574 None:intergenic 20.0%
!!! TCAGATGAAACAATTTTAAT+CGG + chr4_1:20144931-20144950 Msa0539320:intron 20.0%
!!! ATTGTTTAGGATTTAATTTG+TGG - chr4_1:20145109-20145128 None:intergenic 20.0%
!!! AGCTATGTTTTTAATTTGAA+TGG + chr4_1:20145177-20145196 Msa0539320:intron 20.0%
!! ATTTGAATGGTTGTTTAATT+TGG + chr4_1:20145190-20145209 Msa0539320:intron 20.0%
!! ATCATACTATTGTATTAGAA+AGG - chr4_1:20145495-20145514 None:intergenic 20.0%
!! TTTCTAATACAATAGTATGA+TGG + chr4_1:20145494-20145513 Msa0539320:intron 20.0%
!! AAAAAGAAAAATAGAAACCA+TGG + chr4_1:20145729-20145748 Msa0539320:three_prime_UTR 20.0%
!! TAAACTCATAATAAATGACT+TGG - chr4_1:20145759-20145778 None:intergenic 20.0%
! CGGAACAATTTAAGTAAATT+AGG + chr4_1:20144271-20144290 Msa0539320:five_prime_UTR 25.0%
! CAAAGAAATGGATAATAAGA+GGG - chr4_1:20144322-20144341 None:intergenic 25.0%
!!! GTTTTTTTTGTTACATTAGC+AGG - chr4_1:20144666-20144685 None:intergenic 25.0%
! AGTATTAATCACAACACTAA+CGG + chr4_1:20144707-20144726 Msa0539320:intron 25.0%
!!! CTTTTAAAAAATATCTGCAC+AGG - chr4_1:20145013-20145032 None:intergenic 25.0%
! TCAGGAAAGAATAAAAAGAA+TGG + chr4_1:20145226-20145245 Msa0539320:intron 25.0%
! AGAATGGAAATATGTTTGAA+CGG + chr4_1:20145242-20145261 Msa0539320:intron 25.0%
! GAGTAAATATGTCAAAATCA+TGG - chr4_1:20145371-20145390 None:intergenic 25.0%
! CACTCTAGTAAAAAAAAAGT+TGG - chr4_1:20145629-20145648 None:intergenic 25.0%
! CGGAACAATTTAAGTAAATT+AGG + chr4_1:20144271-20144290 Msa0539320:five_prime_UTR 25.0%
! CAAAGAAATGGATAATAAGA+GGG - chr4_1:20144322-20144341 None:intergenic 25.0%
!!! GTTTTTTTTGTTACATTAGC+AGG - chr4_1:20144666-20144685 None:intergenic 25.0%
! AGTATTAATCACAACACTAA+CGG + chr4_1:20144707-20144726 Msa0539320:intron 25.0%
!!! CTTTTAAAAAATATCTGCAC+AGG - chr4_1:20145013-20145032 None:intergenic 25.0%
! TCAGGAAAGAATAAAAAGAA+TGG + chr4_1:20145226-20145245 Msa0539320:intron 25.0%
! AGAATGGAAATATGTTTGAA+CGG + chr4_1:20145242-20145261 Msa0539320:intron 25.0%
! GAGTAAATATGTCAAAATCA+TGG - chr4_1:20145371-20145390 None:intergenic 25.0%
! CACTCTAGTAAAAAAAAAGT+TGG - chr4_1:20145629-20145648 None:intergenic 25.0%
CATAATCCTATCAAAGCTAA+AGG - chr4_1:20144246-20144265 None:intergenic 30.0%
GCAAAGAAATGGATAATAAG+AGG - chr4_1:20144323-20144342 None:intergenic 30.0%
ATAATTCTTGTCAGTGTGAT+TGG - chr4_1:20144462-20144481 None:intergenic 30.0%
GATTCTCATTTAATTCGGTT+TGG + chr4_1:20144523-20144542 Msa0539320:intron 30.0%
AAAAGTTGTAAAAGTTGCGA+AGG + chr4_1:20145028-20145047 Msa0539320:CDS 30.0%
!! TGTTTAATTTGGACTTTGAC+AGG + chr4_1:20145201-20145220 Msa0539320:intron 30.0%
!! GTTTAATTTGGACTTTGACA+GGG + chr4_1:20145202-20145221 Msa0539320:intron 30.0%
TGATACCAAAGATAATGCAA+GGG - chr4_1:20145285-20145304 None:intergenic 30.0%
ATGATACCAAAGATAATGCA+AGG - chr4_1:20145286-20145305 None:intergenic 30.0%
! TTTTGCAAAAGCTATAAGTG+CGG + chr4_1:20145321-20145340 Msa0539320:intron 30.0%
! TTTTACTAGAGTGAAGAATG+CGG + chr4_1:20145636-20145655 Msa0539320:exon 30.0%
CATAATCCTATCAAAGCTAA+AGG - chr4_1:20144246-20144265 None:intergenic 30.0%
GCAAAGAAATGGATAATAAG+AGG - chr4_1:20144323-20144342 None:intergenic 30.0%
ATAATTCTTGTCAGTGTGAT+TGG - chr4_1:20144462-20144481 None:intergenic 30.0%
GATTCTCATTTAATTCGGTT+TGG + chr4_1:20144523-20144542 Msa0539320:intron 30.0%
AAAAGTTGTAAAAGTTGCGA+AGG + chr4_1:20145028-20145047 Msa0539320:CDS 30.0%
!! TGTTTAATTTGGACTTTGAC+AGG + chr4_1:20145201-20145220 Msa0539320:intron 30.0%
!! GTTTAATTTGGACTTTGACA+GGG + chr4_1:20145202-20145221 Msa0539320:intron 30.0%
TGATACCAAAGATAATGCAA+GGG - chr4_1:20145285-20145304 None:intergenic 30.0%
ATGATACCAAAGATAATGCA+AGG - chr4_1:20145286-20145305 None:intergenic 30.0%
! TTTTGCAAAAGCTATAAGTG+CGG + chr4_1:20145321-20145340 Msa0539320:intron 30.0%
! TTTTACTAGAGTGAAGAATG+CGG + chr4_1:20145636-20145655 Msa0539320:exon 30.0%
GTGTGTATCTTGCAAAGAAA+TGG - chr4_1:20144334-20144353 None:intergenic 35.0%
ATTGTAGCAACAAACAGAGA+TGG - chr4_1:20144394-20144413 None:intergenic 35.0%
! ATCTCTGTTTGTTGCTACAA+TGG + chr4_1:20144393-20144412 Msa0539320:CDS 35.0%
GCTTTATGAAGAAAAGTTGG+TGG - chr4_1:20144429-20144448 None:intergenic 35.0%
! GGAGCTTTATGAAGAAAAGT+TGG - chr4_1:20144432-20144451 None:intergenic 35.0%
ATCACTACTTCTGCTTCAAA+AGG + chr4_1:20144501-20144520 Msa0539320:CDS 35.0%
! ATGCTACAAGAACATTTTCG+TGG - chr4_1:20144585-20144604 None:intergenic 35.0%
TAATACTGACGATACTTAGC+AGG - chr4_1:20144694-20144713 None:intergenic 35.0%
ACTAGAGTTTCCAAACCATA+TGG + chr4_1:20144794-20144813 Msa0539320:intron 35.0%
TTCCAAACCATATGGTTGAA+AGG + chr4_1:20144802-20144821 Msa0539320:intron 35.0%
TCCAAACCATATGGTTGAAA+GGG + chr4_1:20144803-20144822 Msa0539320:intron 35.0%
AATAATACCACCTTACATCC+TGG - chr4_1:20145073-20145092 None:intergenic 35.0%
ATGGAAATATGTTTGAACGG+TGG + chr4_1:20145245-20145264 Msa0539320:intron 35.0%
! TAGCTTTTGCAAAATCACGA+TGG - chr4_1:20145315-20145334 None:intergenic 35.0%
! AAAGCTATAAGTGCGGTTTT+TGG + chr4_1:20145328-20145347 Msa0539320:intron 35.0%
GTATGATGGTATAGATGCTT+TGG + chr4_1:20145508-20145527 Msa0539320:intron 35.0%
TTTACTAGAGTGAAGAATGC+GGG + chr4_1:20145637-20145656 Msa0539320:exon 35.0%
! ATAAATGACTTGGATTGCCA+TGG - chr4_1:20145749-20145768 None:intergenic 35.0%
GTGTGTATCTTGCAAAGAAA+TGG - chr4_1:20144334-20144353 None:intergenic 35.0%
ATTGTAGCAACAAACAGAGA+TGG - chr4_1:20144394-20144413 None:intergenic 35.0%
! ATCTCTGTTTGTTGCTACAA+TGG + chr4_1:20144393-20144412 Msa0539320:CDS 35.0%
GCTTTATGAAGAAAAGTTGG+TGG - chr4_1:20144429-20144448 None:intergenic 35.0%
! GGAGCTTTATGAAGAAAAGT+TGG - chr4_1:20144432-20144451 None:intergenic 35.0%
ATCACTACTTCTGCTTCAAA+AGG + chr4_1:20144501-20144520 Msa0539320:CDS 35.0%
! ATGCTACAAGAACATTTTCG+TGG - chr4_1:20144585-20144604 None:intergenic 35.0%
TAATACTGACGATACTTAGC+AGG - chr4_1:20144694-20144713 None:intergenic 35.0%
ACTAGAGTTTCCAAACCATA+TGG + chr4_1:20144794-20144813 Msa0539320:intron 35.0%
TTCCAAACCATATGGTTGAA+AGG + chr4_1:20144802-20144821 Msa0539320:intron 35.0%
TCCAAACCATATGGTTGAAA+GGG + chr4_1:20144803-20144822 Msa0539320:intron 35.0%
AATAATACCACCTTACATCC+TGG - chr4_1:20145073-20145092 None:intergenic 35.0%
ATGGAAATATGTTTGAACGG+TGG + chr4_1:20145245-20145264 Msa0539320:intron 35.0%
! TAGCTTTTGCAAAATCACGA+TGG - chr4_1:20145315-20145334 None:intergenic 35.0%
! AAAGCTATAAGTGCGGTTTT+TGG + chr4_1:20145328-20145347 Msa0539320:intron 35.0%
GTATGATGGTATAGATGCTT+TGG + chr4_1:20145508-20145527 Msa0539320:intron 35.0%
TTTACTAGAGTGAAGAATGC+GGG + chr4_1:20145637-20145656 Msa0539320:exon 35.0%
! ATAAATGACTTGGATTGCCA+TGG - chr4_1:20145749-20145768 None:intergenic 35.0%
AACCACTGATCACATTCACA+GGG + chr4_1:20144356-20144375 Msa0539320:five_prime_UTR 40.0%
TGTCTGTGATCTTGCTAAAG+CGG - chr4_1:20144742-20144761 None:intergenic 40.0%
ACCCTTTCAACCATATGGTT+TGG - chr4_1:20144807-20144826 None:intergenic 40.0%
TTGAAAGGGTCGATGTTGTT+TGG + chr4_1:20144817-20144836 Msa0539320:intron 40.0%
CAATAAGCTGATGTAGCTCA+TGG - chr4_1:20144968-20144987 None:intergenic 40.0%
TGTAAAAGTTGCGAAGGCAA+AGG + chr4_1:20145034-20145053 Msa0539320:CDS 40.0%
GTAAAAGTTGCGAAGGCAAA+GGG + chr4_1:20145035-20145054 Msa0539320:CDS 40.0%
TAAAAGTTGCGAAGGCAAAG+GGG + chr4_1:20145036-20145055 Msa0539320:CDS 40.0%
CTTCTCCCTTGCATTATCTT+TGG + chr4_1:20145277-20145296 Msa0539320:intron 40.0%
AACTGATCAACCCAAATCCT+TGG - chr4_1:20145537-20145556 None:intergenic 40.0%
ATCTTTCTCCTGTTTGCTCT+GGG - chr4_1:20145588-20145607 None:intergenic 40.0%
TATCTTTCTCCTGTTTGCTC+TGG - chr4_1:20145589-20145608 None:intergenic 40.0%
TTACTAGAGTGAAGAATGCG+GGG + chr4_1:20145638-20145657 Msa0539320:exon 40.0%
AACCACTGATCACATTCACA+GGG + chr4_1:20144356-20144375 Msa0539320:five_prime_UTR 40.0%
TGTCTGTGATCTTGCTAAAG+CGG - chr4_1:20144742-20144761 None:intergenic 40.0%
ACCCTTTCAACCATATGGTT+TGG - chr4_1:20144807-20144826 None:intergenic 40.0%
TTGAAAGGGTCGATGTTGTT+TGG + chr4_1:20144817-20144836 Msa0539320:intron 40.0%
CAATAAGCTGATGTAGCTCA+TGG - chr4_1:20144968-20144987 None:intergenic 40.0%
TGTAAAAGTTGCGAAGGCAA+AGG + chr4_1:20145034-20145053 Msa0539320:CDS 40.0%
GTAAAAGTTGCGAAGGCAAA+GGG + chr4_1:20145035-20145054 Msa0539320:CDS 40.0%
TAAAAGTTGCGAAGGCAAAG+GGG + chr4_1:20145036-20145055 Msa0539320:CDS 40.0%
CTTCTCCCTTGCATTATCTT+TGG + chr4_1:20145277-20145296 Msa0539320:intron 40.0%
AACTGATCAACCCAAATCCT+TGG - chr4_1:20145537-20145556 None:intergenic 40.0%
ATCTTTCTCCTGTTTGCTCT+GGG - chr4_1:20145588-20145607 None:intergenic 40.0%
TATCTTTCTCCTGTTTGCTC+TGG - chr4_1:20145589-20145608 None:intergenic 40.0%
TTACTAGAGTGAAGAATGCG+GGG + chr4_1:20145638-20145657 Msa0539320:exon 40.0%
ATAAGAGGGTTTGTCACGTG+TGG - chr4_1:20144308-20144327 None:intergenic 45.0%
CAACCACTGATCACATTCAC+AGG + chr4_1:20144355-20144374 Msa0539320:five_prime_UTR 45.0%
TTCCCTGTGAATGTGATCAG+TGG - chr4_1:20144361-20144380 None:intergenic 45.0%
GTAGCAACAAACAGAGATGG+AGG - chr4_1:20144391-20144410 None:intergenic 45.0%
! TTGTTGCTACAATGGTGCTG+TGG + chr4_1:20144401-20144420 Msa0539320:CDS 45.0%
! GTCAGTGTGATTGGTTGAAG+TGG - chr4_1:20144453-20144472 None:intergenic 45.0%
CATCGACCCTTTCAACCATA+TGG - chr4_1:20144812-20144831 None:intergenic 45.0%
CTTACATCCTGGACATTCGA+TGG - chr4_1:20145062-20145081 None:intergenic 45.0%
CATCGAATGTCCAGGATGTA+AGG + chr4_1:20145060-20145079 Msa0539320:CDS 45.0%
TTTGGACTTTGACAGGGATC+AGG + chr4_1:20145208-20145227 Msa0539320:intron 45.0%
TATAGATGCTTTGGCTGCCA+AGG + chr4_1:20145517-20145536 Msa0539320:intron 45.0%
TCTTTCTCCTGTTTGCTCTG+GGG - chr4_1:20145587-20145606 None:intergenic 45.0%
ATAAGAGGGTTTGTCACGTG+TGG - chr4_1:20144308-20144327 None:intergenic 45.0%
CAACCACTGATCACATTCAC+AGG + chr4_1:20144355-20144374 Msa0539320:five_prime_UTR 45.0%
TTCCCTGTGAATGTGATCAG+TGG - chr4_1:20144361-20144380 None:intergenic 45.0%
GTAGCAACAAACAGAGATGG+AGG - chr4_1:20144391-20144410 None:intergenic 45.0%
! TTGTTGCTACAATGGTGCTG+TGG + chr4_1:20144401-20144420 Msa0539320:CDS 45.0%
! GTCAGTGTGATTGGTTGAAG+TGG - chr4_1:20144453-20144472 None:intergenic 45.0%
CATCGACCCTTTCAACCATA+TGG - chr4_1:20144812-20144831 None:intergenic 45.0%
CTTACATCCTGGACATTCGA+TGG - chr4_1:20145062-20145081 None:intergenic 45.0%
CATCGAATGTCCAGGATGTA+AGG + chr4_1:20145060-20145079 Msa0539320:CDS 45.0%
TTTGGACTTTGACAGGGATC+AGG + chr4_1:20145208-20145227 Msa0539320:intron 45.0%
TATAGATGCTTTGGCTGCCA+AGG + chr4_1:20145517-20145536 Msa0539320:intron 45.0%
TCTTTCTCCTGTTTGCTCTG+GGG - chr4_1:20145587-20145606 None:intergenic 45.0%
CGAATGTCCAGGATGTAAGG+TGG + chr4_1:20145063-20145082 Msa0539320:intron 50.0%
TGCTTTGGCTGCCAAGGATT+TGG + chr4_1:20145523-20145542 Msa0539320:CDS 50.0%
GCTTTGGCTGCCAAGGATTT+GGG + chr4_1:20145524-20145543 Msa0539320:CDS 50.0%
TAGAGTGAAGAATGCGGGGA+TGG + chr4_1:20145642-20145661 Msa0539320:exon 50.0%
CGAATGTCCAGGATGTAAGG+TGG + chr4_1:20145063-20145082 Msa0539320:intron 50.0%
TGCTTTGGCTGCCAAGGATT+TGG + chr4_1:20145523-20145542 Msa0539320:CDS 50.0%
GCTTTGGCTGCCAAGGATTT+GGG + chr4_1:20145524-20145543 Msa0539320:CDS 50.0%
TAGAGTGAAGAATGCGGGGA+TGG + chr4_1:20145642-20145661 Msa0539320:exon 50.0%
AAAGGGGCCATCGAATGTCC+AGG + chr4_1:20145052-20145071 Msa0539320:CDS 55.0%
TTGATCAGTTGCCCCAGCTG+TGG + chr4_1:20145547-20145566 Msa0539320:CDS 55.0%
AGTTGCCCCAGCTGTGGAAA+GGG + chr4_1:20145553-20145572 Msa0539320:CDS 55.0%
AACCCTCCCTTTCCACAGCT+GGG - chr4_1:20145562-20145581 None:intergenic 55.0%
AAAGGGGCCATCGAATGTCC+AGG + chr4_1:20145052-20145071 Msa0539320:CDS 55.0%
TTGATCAGTTGCCCCAGCTG+TGG + chr4_1:20145547-20145566 Msa0539320:CDS 55.0%
AGTTGCCCCAGCTGTGGAAA+GGG + chr4_1:20145553-20145572 Msa0539320:CDS 55.0%
AACCCTCCCTTTCCACAGCT+GGG - chr4_1:20145562-20145581 None:intergenic 55.0%
CAGTTGCCCCAGCTGTGGAA+AGG + chr4_1:20145552-20145571 Msa0539320:CDS 60.0%
ACCCTCCCTTTCCACAGCTG+GGG - chr4_1:20145561-20145580 None:intergenic 60.0%
CAACCCTCCCTTTCCACAGC+TGG - chr4_1:20145563-20145582 None:intergenic 60.0%
GGGTTGACCCCAGAGCAAAC+AGG + chr4_1:20145577-20145596 Msa0539320:CDS 60.0%
CAGTTGCCCCAGCTGTGGAA+AGG + chr4_1:20145552-20145571 Msa0539320:CDS 60.0%
ACCCTCCCTTTCCACAGCTG+GGG - chr4_1:20145561-20145580 None:intergenic 60.0%
CAACCCTCCCTTTCCACAGC+TGG - chr4_1:20145563-20145582 None:intergenic 60.0%
GGGTTGACCCCAGAGCAAAC+AGG + chr4_1:20145577-20145596 Msa0539320:CDS 60.0%
TGCCCCAGCTGTGGAAAGGG+AGG + chr4_1:20145556-20145575 Msa0539320:CDS 65.0%
GCCCCAGCTGTGGAAAGGGA+GGG + chr4_1:20145557-20145576 Msa0539320:CDS 65.0%
TGCCCCAGCTGTGGAAAGGG+AGG + chr4_1:20145556-20145575 Msa0539320:CDS 65.0%
GCCCCAGCTGTGGAAAGGGA+GGG + chr4_1:20145557-20145576 Msa0539320:CDS 65.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 20144241 20145794 20144241 ID=Msa0539320;Name=Msa0539320
chr4_1 mRNA 20144241 20145794 20144241 ID=Msa0539320-mRNA-1;Parent=Msa0539320;Name=Msa0539320-mRNA-1;_AED=0.10;_eAED=0.10;_QI=143|0.5|1|1|0|0.33|3|150|113
chr4_1 exon 20144241 20144539 20144241 ID=Msa0539320-mRNA-1:exon:5771;Parent=Msa0539320-mRNA-1
chr4_1 exon 20145019 20145081 20145019 ID=Msa0539320-mRNA-1:exon:5772;Parent=Msa0539320-mRNA-1
chr4_1 exon 20145522 20145794 20145522 ID=Msa0539320-mRNA-1:exon:5773;Parent=Msa0539320-mRNA-1
chr4_1 five_prime_UTR 20144241 20144383 20144241 ID=Msa0539320-mRNA-1:five_prime_utr;Parent=Msa0539320-mRNA-1
chr4_1 CDS 20144384 20144539 20144384 ID=Msa0539320-mRNA-1:cds;Parent=Msa0539320-mRNA-1
chr4_1 CDS 20145019 20145081 20145019 ID=Msa0539320-mRNA-1:cds;Parent=Msa0539320-mRNA-1
chr4_1 CDS 20145522 20145644 20145522 ID=Msa0539320-mRNA-1:cds;Parent=Msa0539320-mRNA-1
chr4_1 three_prime_UTR 20145645 20145794 20145645 ID=Msa0539320-mRNA-1:three_prime_utr;Parent=Msa0539320-mRNA-1
Gene Sequence

>Msa0539320

ATGTCCTCCATCTCTGTTTGTTGCTACAATGGTGCTGTGGCTCCACCAACTTTTCTTCATAAAGCTCCACTTCAACCAATCACACTGACAAGAATTATACAACGAAGACAGAGCACAATCACTACTTCTGCTTCAAAAGGATTCTCATTTAATTCGATATTTTTTAAAAGTTGTAAAAGTTGCGAAGGCAAAGGGGCCATCGAATGTCCAGGATGTAAGATGCTTTGGCTGCCAAGGATTTGGGTTGATCAGTTGCCCCAGCTGTGGAAAGGGAGGGTTGACCCCAGAGCAAACAGGAGAAAGATAAAGAAGCTTCAAAACAACCAACTTTTTTTTTACTAG

Protein sequence

>Msa0539320

MSSISVCCYNGAVAPPTFLHKAPLQPITLTRIIQRRQSTITTSASKGFSFNSIFFKSCKSCEGKGAIECPGCKMLWLPRIWVDQLPQLWKGRVDPRANRRKIKKLQNNQLFFY*